Start: 2022-08-08 09:33:53 GMT [testing] Package: igblast Source: ncbi-igblast Version: 1.19.0-1 Installed-Size: 226951 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 11) Description: Immunoglobulin and T cell receptor variable domain sequence analysis Homepage: https://ncbi.github.io/igblast/ Description-md5: 2962314d8994f10816be6f57d21f8ffc Section: science Priority: optional Filename: pool/main/n/ncbi-igblast/igblast_1.19.0-1_amd64.deb Size: 38242708 MD5sum: 4af00d33cceb8e3a991e0ae00d01091c SHA256: 7636bcce1dedde8bc3f5ba64a9aaf8a1013df61f70733188e5b2a285558b767a [sid] Package: igblast Source: ncbi-igblast (1.19.0-1) Version: 1.19.0-1+b1 Installed-Size: 226928 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11) Description: Immunoglobulin and T cell receptor variable domain sequence analysis Homepage: https://ncbi.github.io/igblast/ Description-md5: 2962314d8994f10816be6f57d21f8ffc Section: science Priority: optional Filename: pool/main/n/ncbi-igblast/igblast_1.19.0-1+b1_amd64.deb Size: 38239560 MD5sum: 3d0a8526b1ae4438539a817e773cfa70 SHA256: 5c4557e8b6be5f30dbb2adaddc70f91559fc77cfed2686284c0c6ebe39524c37 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt igblast=1.19.0-1+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt igblast=1.19.0-1+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-21-amd64 #1 SMP Debian 4.19.249-2 (2022-06-30) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp57y050e1 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp57y050e1 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp57y050e1', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp57y050e1', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp57y050e1/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp57y050e1/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp57y050e1/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', 'update'] 0m4.8s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [157 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8522 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5799 kB] Fetched 14.5 MB in 2s (7300 kB/s) Reading package lists... 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', 'update'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 mount sysvinit-utils util-linux util-linux-extra 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2448 kB of archives. After this operation, 10.2 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-1 [152 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-1 [164 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-1 [168 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-1 [1231 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 sysvinit-utils amd64 3.04-1 [26.9 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-1 [192 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-1 [205 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-1 [223 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.38.1-1 [86.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2448 kB in 0s (36.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-1_amd64.deb ... Unpacking bsdutils (1:2.38.1-1) over (1:2.38-6) ... Setting up bsdutils (1:2.38.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38.1-1) over (2.38-6) ... Setting up libsmartcols1:amd64 (2.38.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-1_amd64.deb ... Unpacking util-linux-extra (2.38.1-1) over (2.38-6) ... Setting up util-linux-extra (2.38.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-1_amd64.deb ... Unpacking util-linux (2.38.1-1) over (2.38-6) ... Setting up util-linux (2.38.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6619 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.04-1_amd64.deb ... Unpacking sysvinit-utils (3.04-1) over (3.03-1) ... Setting up sysvinit-utils (3.04-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6619 files and directories currently installed.) Preparing to unpack .../mount_2.38.1-1_amd64.deb ... Unpacking mount (2.38.1-1) over (2.38-6) ... Preparing to unpack .../libblkid1_2.38.1-1_amd64.deb ... Unpacking libblkid1:amd64 (2.38.1-1) over (2.38-6) ... Setting up libblkid1:amd64 (2.38.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6619 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-1_amd64.deb ... Unpacking libmount1:amd64 (2.38.1-1) over (2.38-6) ... Setting up libmount1:amd64 (2.38.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6619 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38.1-1_amd64.deb ... Unpacking libuuid1:amd64 (2.38.1-1) over (2.38-6) ... Setting up libuuid1:amd64 (2.38.1-1) ... Setting up mount (2.38.1-1) ... Processing triggers for libc-bin (2.33-8) ... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.4s DUMP: 393898afec5e34ef6d017a31b2f1b0fa - 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.4s INFO: Running scripts post_setup 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_dummy_users'] 0m7.3s DUMP: useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_dummy_users'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_forbid_home'] 0m7.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_forbid_home'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DUMP: install ok installed adduser adduser 3.123 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6.1 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.1.0-7 install ok installed gpgv gpgv 2.2.35-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.64 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-8 install ok installed libc6:amd64 libc6 2.33-8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.263 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.1.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-13 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-13 install ok installed libpam-runtime libpam-runtime 1.4.0-13 install ok installed libpam0g:amd64 libpam0g 1.4.0-13 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.1.0-7 install ok installed libsystemd0:amd64 libsystemd0 251.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.3-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sgml-base sgml-base 1.30 install ok installed sysvinit-utils sysvinit-utils 3.04-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022a-1 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m7.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m7.6s INFO: Running scripts is_testable 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/is_testable_uninstallable'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/is_testable_uninstallable'] 0m7.6s INFO: Running scripts pre_test 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_test_exceptions'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_test_exceptions'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_test_root_password'] 0m7.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_test_root_password'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'show', '--no-all-versions', 'igblast'] 0m7.8s DUMP: Package: igblast Source: ncbi-igblast Version: 1.19.0-1 Installed-Size: 226951 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 11) Description-en: Immunoglobulin and T cell receptor variable domain sequence analysis IgBLAST allows users to view the matches to the germline V, D, and J genes, details at rearrangement junctions, the delineation of IG V domain framework regions, and complementarity determining regions. IgBLAST has the capability to analyse nucleotide and protein sequences, and can process sequences in batches. Furthermore, IgBLAST allows searches against the germline gene databases and other sequence databases simultaneously to minimize the chance of missing possibly the best matching germline V gene. Description-md5: 2962314d8994f10816be6f57d21f8ffc Homepage: https://ncbi.github.io/igblast/ Section: science Priority: optional Filename: pool/main/n/ncbi-igblast/igblast_1.19.0-1_amd64.deb Size: 38242708 MD5sum: 4af00d33cceb8e3a991e0ae00d01091c SHA256: 7636bcce1dedde8bc3f5ba64a9aaf8a1013df61f70733188e5b2a285558b767a 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'show', '--no-all-versions', 'igblast'] 0m7.8s INFO: apt-cache knows about the following packages: igblast 0m7.8s INFO: Running scripts pre_install 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_database-server'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_database-server'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_exceptions'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_exceptions'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_extras'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_extras'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy'] 0m7.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy', 'igblast'] 0m7.9s DUMP: igblast: Installed: (none) Candidate: 1.19.0-1 Version table: 1.19.0-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy', 'igblast'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', '-y', 'install', 'igblast'] 0m13.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: igblast 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 38.2 MB of archives. After this operation, 232 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 igblast amd64 1.19.0-1 [38.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.2 MB in 1s (29.6 MB/s) Selecting previously unselected package igblast. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6621 files and directories currently installed.) Preparing to unpack .../igblast_1.19.0-1_amd64.deb ... Unpacking igblast (1.19.0-1) ... Setting up igblast (1.19.0-1) ... 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', '-y', 'install', 'igblast'] 0m13.7s INFO: Running scripts post_install 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_install_exceptions'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_install_exceptions'] 0m13.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m14.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m14.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp57y050e1 to sid 0m14.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m14.1s INFO: Running scripts pre_distupgrade 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', 'update'] 0m17.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [192 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9305 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6878 kB] Fetched 16.4 MB in 3s (5900 kB/s) Reading package lists... 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', 'update'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', '-yf', 'dist-upgrade'] 0m26.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debianutils igblast libc-bin libc6 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 42.0 MB of archives. After this operation, 372 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.7-0.3 [102 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.34-1 [2762 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.34-1 [895 kB] Get:4 http://deb.debian.org/debian sid/main amd64 igblast amd64 1.19.0-1+b1 [38.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.0 MB in 2s (18.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7502 files and directories currently installed.) Preparing to unpack .../debianutils_5.7-0.3_amd64.deb ... Unpacking debianutils (5.7-0.3) over (5.7-0.2) ... Setting up debianutils (5.7-0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7502 files and directories currently installed.) Preparing to unpack .../libc6_2.34-1_amd64.deb ... Unpacking libc6:amd64 (2.34-1) over (2.33-8) ... Setting up libc6:amd64 (2.34-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7488 files and directories currently installed.) Preparing to unpack .../libc-bin_2.34-1_amd64.deb ... Unpacking libc-bin (2.34-1) over (2.33-8) ... Setting up libc-bin (2.34-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7488 files and directories currently installed.) Preparing to unpack .../igblast_1.19.0-1+b1_amd64.deb ... Unpacking igblast (1.19.0-1+b1) over (1.19.0-1) ... Setting up igblast (1.19.0-1+b1) ... 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', '-yf', 'dist-upgrade'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.6s DUMP: 69adc3bbfa4a9fe6a08508befbcf7e6f - 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'show', '--no-all-versions', 'igblast'] 0m26.8s DUMP: Package: igblast Source: ncbi-igblast (1.19.0-1) Version: 1.19.0-1+b1 Installed-Size: 226928 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11) Description-en: Immunoglobulin and T cell receptor variable domain sequence analysis IgBLAST allows users to view the matches to the germline V, D, and J genes, details at rearrangement junctions, the delineation of IG V domain framework regions, and complementarity determining regions. IgBLAST has the capability to analyse nucleotide and protein sequences, and can process sequences in batches. Furthermore, IgBLAST allows searches against the germline gene databases and other sequence databases simultaneously to minimize the chance of missing possibly the best matching germline V gene. Description-md5: 2962314d8994f10816be6f57d21f8ffc Homepage: https://ncbi.github.io/igblast/ Section: science Priority: optional Filename: pool/main/n/ncbi-igblast/igblast_1.19.0-1+b1_amd64.deb Size: 38239560 MD5sum: 3d0a8526b1ae4438539a817e773cfa70 SHA256: 5c4557e8b6be5f30dbb2adaddc70f91559fc77cfed2686284c0c6ebe39524c37 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'show', '--no-all-versions', 'igblast'] 0m26.8s INFO: apt-cache knows about the following packages: igblast 0m26.8s INFO: Running scripts pre_install 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_database-server'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_database-server'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_exceptions'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_exceptions'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_extras'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_extras'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy'] 0m26.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy', 'igblast'] 0m27.0s DUMP: igblast: Installed: 1.19.0-1+b1 Candidate: 1.19.0-1+b1 Version table: *** 1.19.0-1+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy', 'igblast'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', '-y', 'install', 'igblast'] 0m27.5s DUMP: Reading package lists... Building dependency tree... Reading state information... igblast is already the newest version (1.19.0-1+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', '-y', 'install', 'igblast'] 0m27.5s INFO: Running scripts post_install 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_install_exceptions'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_install_exceptions'] 0m27.5s INFO: Running scripts post_distupgrade 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m27.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m27.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m28.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m28.2s INFO: Running scripts pre_install 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_database-server'] 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_database-server'] 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_exceptions'] 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_exceptions'] 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_extras'] 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_extras'] 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy'] 0m28.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy', 'igblast'] 0m28.3s DUMP: igblast: Installed: 1.19.0-1+b1 Candidate: 1.19.0-1+b1 Version table: *** 1.19.0-1+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-cache', 'policy', 'igblast'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', '-y', 'install', 'igblast=1.19.0-1+b1'] 0m28.9s DUMP: Reading package lists... Building dependency tree... Reading state information... igblast is already the newest version (1.19.0-1+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', '-y', 'install', 'igblast=1.19.0-1+b1'] 0m28.9s INFO: Running scripts post_install 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_install_exceptions'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_install_exceptions'] 0m28.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m29.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m29.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp57y050e1', '-ac', '--ignore-obsolete'] 0m30.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp57y050e1', '-ac', '--ignore-obsolete'] 0m30.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.0s DUMP: 0.15.2 0m31.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.0s INFO: Running adequate version 0.15.2 now. 0m31.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'igblast'] 0m31.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'igblast'] 0m31.0s INFO: Running scripts pre_remove 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_exceptions'] 0m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/pre_remove_exceptions'] 0m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m31.9s DUMP: install ok installed adduser adduser 3.123 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6.1 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.1.0-7 install ok installed gpgv gpgv 2.2.35-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed igblast igblast 1.19.0-1+b1 install ok installed init-system-helpers init-system-helpers 1.64 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.34-1 install ok installed libc6:amd64 libc6 2.34-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.263 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.1.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-13 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-13 install ok installed libpam-runtime libpam-runtime 1.4.0-13 install ok installed libpam0g:amd64 libpam0g 1.4.0-13 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.1.0-7 install ok installed libsystemd0:amd64 libsystemd0 251.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.3-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sgml-base sgml-base 1.30 install ok installed sysvinit-utils sysvinit-utils 3.04-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022a-1 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4 0m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', 'remove', 'igblast'] 0m32.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: igblast 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 232 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7489 files and directories currently installed.) Removing igblast (1.19.0-1+b1) ... 0m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', 'remove', 'igblast'] 0m32.6s INFO: Running scripts post_remove 0m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_remove_exceptions'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_remove_exceptions'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg', '--purge', 'igblast'] 0m32.7s DUMP: dpkg: warning: ignoring request to remove igblast which isn't installed 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg', '--purge', 'igblast'] 0m32.7s INFO: Running scripts post_purge 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_purge_exceptions'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_purge_exceptions'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg', '--purge', '--pending'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg', '--purge', '--pending'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg', '--remove', '--pending'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg', '--remove', '--pending'] 0m32.7s INFO: Running scripts post_test 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_test_exceptions'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'tmp/scripts/post_test_exceptions'] 0m32.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m33.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg-divert', '--list'] 0m33.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'dpkg-divert', '--list'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', 'clean'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp57y050e1', 'apt-get', 'clean'] 0m33.1s DEBUG: Recording chroot state 0m33.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/shm'] 0m33.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/shm'] 0m33.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/console'] 0m33.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/console'] 0m33.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/ptmx'] 0m33.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/ptmx'] 0m33.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/pts'] 0m34.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp57y050e1/dev/pts'] 0m34.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp57y050e1/proc'] 0m34.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp57y050e1/proc'] 0m34.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m34.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp57y050e1'] 0m34.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp57y050e1 0m34.1s INFO: PASS: Upgrading between Debian distributions. 0m34.1s INFO: PASS: All tests. 0m34.1s INFO: piuparts run ends. ret=0 End: 2022-08-08 09:34:27 GMT