Start: 2024-12-17 21:49:37 GMT

[testing]
Package: infernal
Version: 1.1.5-2
Installed-Size: 51445
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libc6 (>= 2.34)
Description: inference of RNA secondary structural alignments
Homepage: http://eddylab.org/infernal/
Description-md5: 0fa26f15adcc8d61cdb1b817c872c7ec
Tag: field::biology, field::biology:bioinformatics, implemented-in::c,
 interface::commandline, role::program, use::analysing
Section: science
Priority: optional
Filename: pool/main/i/infernal/infernal_1.1.5-2_amd64.deb
Size: 5913900
MD5sum: 95121c01dec22b1111ce08098d7a6aa7
SHA256: 9b4ca4eef7afaf99adfd84e9f8199be98be4e1da852fc110b84224d2bb4103d4

[sid]
Package: infernal
Version: 1.1.5-3
Installed-Size: 52049
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libc6 (>= 2.34)
Description: inference of RNA secondary structural alignments
Homepage: http://eddylab.org/infernal/
Description-md5: 0fa26f15adcc8d61cdb1b817c872c7ec
Tag: field::biology, field::biology:bioinformatics, implemented-in::c,
 interface::commandline, role::program, use::analysing
Section: science
Priority: optional
Filename: pool/main/i/infernal/infernal_1.1.5-3_amd64.deb
Size: 5936008
MD5sum: aafd88a4463186aa940b38a1c5ad23f8
SHA256: b2209c38d4b0b5158751a8575beca71463fee563dc5e77d8380a2063aeb94d5e

Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt infernal=1.1.5-3
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up.
0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt infernal=1.1.5-3
0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpk_277a6i
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpk_277a6i
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz']
0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz']
0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/proc']
0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/proc']
0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/pts']
0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/pts']
0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/ptmx']
0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/ptmx']
0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/console']
0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/console']
0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/shm']
0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/shm']
0m0.3s DEBUG: sources.list:
  deb http://deb.debian.org/debian/ trixie main
0m0.4s DEBUG: Created policy-rc.d and chmodded it.
0m0.4s DEBUG: Created resolv.conf.
0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpk_277a6i/tmp/scripts/
0m0.4s INFO: Running scripts post_chroot_unpack
0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', 'update']
0m2.9s DUMP: 
  Get:1 http://deb.debian.org/debian trixie InRelease [172 kB]
  Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9367 kB]
  Get:3 http://deb.debian.org/debian trixie/main Translation-en [6285 kB]
  Fetched 15.8 MB in 2s (8741 kB/s)
  Reading package lists...
0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', 'update']
0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', '-yf', 'dist-upgrade']
0m4.5s DUMP: 
  Reading package lists...
  Building dependency tree...
  Calculating upgrade...
  The following packages will be upgraded:
    apt libapt-pkg6.0t64 libsystemd0 libudev1
  4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
  Need to get 3077 kB of archives.
  After this operation, 67.6 kB disk space will be freed.
  Get:1 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257-2 [448 kB]
  Get:2 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257-2 [147 kB]
  Get:3 http://deb.debian.org/debian trixie/main amd64 libapt-pkg6.0t64 amd64 2.9.17 [1113 kB]
  Get:4 http://deb.debian.org/debian trixie/main amd64 apt amd64 2.9.17 [1368 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 3077 kB in 0s (40.0 MB/s)
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5137 files and directories currently installed.)
  Preparing to unpack .../libsystemd0_257-2_amd64.deb ...
  Unpacking libsystemd0:amd64 (257-2) over (257~rc3-1) ...
  Setting up libsystemd0:amd64 (257-2) ...
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5137 files and directories currently installed.)
  Preparing to unpack .../libudev1_257-2_amd64.deb ...
  Unpacking libudev1:amd64 (257-2) over (257~rc3-1) ...
  Setting up libudev1:amd64 (257-2) ...
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5137 files and directories currently installed.)
  Preparing to unpack .../libapt-pkg6.0t64_2.9.17_amd64.deb ...
  Unpacking libapt-pkg6.0t64:amd64 (2.9.17) over (2.9.16) ...
  Setting up libapt-pkg6.0t64:amd64 (2.9.17) ...
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5137 files and directories currently installed.)
  Preparing to unpack .../archives/apt_2.9.17_amd64.deb ...
  Unpacking apt (2.9.17) over (2.9.16) ...
  Setting up apt (2.9.17) ...
  Processing triggers for libc-bin (2.40-4) ...
0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', '-yf', 'dist-upgrade']
0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m6.3s DUMP: 
  294ccbb113b6d5f001566979328db168  -
0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m6.3s INFO: Running scripts post_setup
0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_dummy_users']
0m7.3s DUMP: 
  useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999
  useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999
  useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999
  useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999
  useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999
  useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999
  useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999
  useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999
  useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999
  useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999
  useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999
0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_dummy_users']
0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_forbid_home']
0m7.3s DUMP: 
  Disabling /home
  Adding 'local diversion of /home to /home.distrib'
0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_forbid_home']
0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_force-unsafe-io']
0m7.3s DUMP: 
  Enabling dpkg --force-unsafe-io.
  Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib'
  Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged'
  '/bin/sync' -> 'true'
0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_force-unsafe-io']
0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_minimize']
0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_minimize']
0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_squeeze-backports']
0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_squeeze-backports']
0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_zz_backports']
0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_setup_zz_backports']
0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m7.4s DUMP: 
  install ok installed	apt	apt	2.9.17
  install ok installed	base-files	base-files	13.6
  install ok installed	base-passwd	base-passwd	3.6.5
  install ok installed	bash	bash	5.2.37-1
  install ok installed	bsdutils	bsdutils	1:2.40.2-12
  install ok installed	coreutils	coreutils	9.5-1+b1
  install ok installed	dash	dash	0.5.12-9
  install ok installed	debconf	debconf	1.5.87
  install ok installed	debian-archive-keyring	debian-archive-keyring	2023.4
  install ok installed	debianutils	debianutils	5.21
  install ok installed	diffutils	diffutils	1:3.10-1
  install ok installed	dpkg	dpkg	1.22.11
  install ok installed	e2fsprogs	e2fsprogs	1.47.2~rc1-2
  install ok installed	findutils	findutils	4.10.0-3
  install ok installed	gcc-14-base:amd64	gcc-14-base	14.2.0-8
  install ok installed	gpgv	gpgv	2.2.45-2
  install ok installed	grep	grep	3.11-4
  install ok installed	gzip	gzip	1.12-1.2
  install ok installed	hostname	hostname	3.25
  install ok installed	init-system-helpers	init-system-helpers	1.67
  install ok installed	libacl1:amd64	libacl1	2.3.2-2+b1
  install ok installed	libapt-pkg6.0t64:amd64	libapt-pkg6.0t64	2.9.17
  install ok installed	libattr1:amd64	libattr1	1:2.5.2-2
  install ok installed	libaudit-common	libaudit-common	1:4.0.2-2
  install ok installed	libaudit1:amd64	libaudit1	1:4.0.2-2
  install ok installed	libblkid1:amd64	libblkid1	2.40.2-12
  install ok installed	libbsd0:amd64	libbsd0	0.12.2-2
  install ok installed	libbz2-1.0:amd64	libbz2-1.0	1.0.8-6
  install ok installed	libc-bin	libc-bin	2.40-4
  install ok installed	libc6:amd64	libc6	2.40-4
  install ok installed	libcap-ng0:amd64	libcap-ng0	0.8.5-4
  install ok installed	libcap2:amd64	libcap2	1:2.66-5+b1
  install ok installed	libcom-err2:amd64	libcom-err2	1.47.2~rc1-2
  install ok installed	libcrypt1:amd64	libcrypt1	1:4.4.36-5
  install ok installed	libdb5.3t64:amd64	libdb5.3t64	5.3.28+dfsg2-9
  install ok installed	libdebconfclient0:amd64	libdebconfclient0	0.274
  install ok installed	libext2fs2t64:amd64	libext2fs2t64	1.47.2~rc1-2
  install ok installed	libffi8:amd64	libffi8	3.4.6-1
  install ok installed	libgcc-s1:amd64	libgcc-s1	14.2.0-8
  install ok installed	libgcrypt20:amd64	libgcrypt20	1.11.0-6
  install ok installed	libgmp10:amd64	libgmp10	2:6.3.0+dfsg-3
  install ok installed	libgnutls30t64:amd64	libgnutls30t64	3.8.8-2
  install ok installed	libgpg-error0:amd64	libgpg-error0	1.51-2
  install ok installed	libhogweed6t64:amd64	libhogweed6t64	3.10-1+b1
  install ok installed	libidn2-0:amd64	libidn2-0	2.3.7-2+b1
  install ok installed	liblz4-1:amd64	liblz4-1	1.9.4-3+b1
  install ok installed	liblzma5:amd64	liblzma5	5.6.3-1+b1
  install ok installed	libmd0:amd64	libmd0	1.1.0-2+b1
  install ok installed	libmount1:amd64	libmount1	2.40.2-12
  install ok installed	libnettle8t64:amd64	libnettle8t64	3.10-1+b1
  install ok installed	libp11-kit0:amd64	libp11-kit0	0.25.5-2+b1
  install ok installed	libpam-modules:amd64	libpam-modules	1.5.3-7+b1
  install ok installed	libpam-modules-bin	libpam-modules-bin	1.5.3-7+b1
  install ok installed	libpam-runtime	libpam-runtime	1.5.3-7
  install ok installed	libpam0g:amd64	libpam0g	1.5.3-7+b1
  install ok installed	libpcre2-8-0:amd64	libpcre2-8-0	10.44-5
  install ok installed	libseccomp2:amd64	libseccomp2	2.5.5-2
  install ok installed	libselinux1:amd64	libselinux1	3.7-3+b1
  install ok installed	libsemanage-common	libsemanage-common	3.7-2
  install ok installed	libsemanage2:amd64	libsemanage2	3.7-2+b1
  install ok installed	libsepol2:amd64	libsepol2	3.7-1
  install ok installed	libsmartcols1:amd64	libsmartcols1	2.40.2-12
  install ok installed	libss2:amd64	libss2	1.47.2~rc1-2
  install ok installed	libssl3t64:amd64	libssl3t64	3.3.2-2
  install ok installed	libstdc++6:amd64	libstdc++6	14.2.0-8
  install ok installed	libsystemd0:amd64	libsystemd0	257-2
  install ok installed	libtasn1-6:amd64	libtasn1-6	4.19.0-3+b3
  install ok installed	libtinfo6:amd64	libtinfo6	6.5-2+b1
  install ok installed	libudev1:amd64	libudev1	257-2
  install ok installed	libunistring5:amd64	libunistring5	1.3-1
  install ok installed	libuuid1:amd64	libuuid1	2.40.2-12
  install ok installed	libxxhash0:amd64	libxxhash0	0.8.2-2+b2
  install ok installed	libzstd1:amd64	libzstd1	1.5.6+dfsg-1+b1
  install ok installed	login	login	1:4.16.0-2+really2.40.2-12
  install ok installed	login.defs	login.defs	1:4.16.0-7
  install ok installed	logsave	logsave	1.47.2~rc1-2
  install ok installed	mawk	mawk	1.3.4.20240905-1
  install ok installed	mount	mount	2.40.2-12
  install ok installed	ncurses-base	ncurses-base	6.5-2
  install ok installed	ncurses-bin	ncurses-bin	6.5-2+b1
  install ok installed	openssl-provider-legacy	openssl-provider-legacy	3.3.2-2
  install ok installed	passwd	passwd	1:4.16.0-7
  install ok installed	perl-base	perl-base	5.40.0-8
  install ok installed	sed	sed	4.9-2
  install ok installed	sysvinit-utils	sysvinit-utils	3.11-1
  install ok installed	tar	tar	1.35+dfsg-3
  install ok installed	tzdata	tzdata	2024b-4
  install ok installed	usr-is-merged	usr-is-merged	39
  install ok installed	util-linux	util-linux	2.40.2-12
  install ok installed	zlib1g:amd64	zlib1g	1:1.3.dfsg+really1.3.1-1+b1
0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m7.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat
0m7.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m7.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m7.9s INFO: Running scripts is_testable
0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/is_testable_uninstallable']
0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/is_testable_uninstallable']
0m7.9s INFO: Running scripts pre_test
0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_test_exceptions']
0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_test_exceptions']
0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_test_root_password']
0m8.0s DUMP: 
  New password: Retype new password: passwd: password updated successfully
0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_test_root_password']
0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'show', '--no-all-versions', 'infernal']
0m8.3s DUMP: 
  Package: infernal
  Version: 1.1.5-2
  Installed-Size: 51445
  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libc6 (>= 2.34)
  Description-en: inference of RNA secondary structural alignments
   Infernal ("INFERence of RNA ALignment") searches DNA sequence
   databases for RNA structure and sequence similarities. It provides an
   implementation of a special variant of profile stochastic context-free
   grammars called covariance models (CMs). A CM is like a sequence
   profile, but it scores a combination of sequence consensus and RNA
   secondary structure consensus, so in many cases, it is more capable of
   identifying RNA homologs that conserve their secondary structure more
   than their primary sequence.
   .
   The tool is an integral component of the Rfam database.
  Description-md5: 0fa26f15adcc8d61cdb1b817c872c7ec
  Homepage: http://eddylab.org/infernal/
  Tag: field::biology, field::biology:bioinformatics, implemented-in::c,
   interface::commandline, role::program, use::analysing
  Section: science
  Priority: optional
  Filename: pool/main/i/infernal/infernal_1.1.5-2_amd64.deb
  Size: 5913900
  MD5sum: 95121c01dec22b1111ce08098d7a6aa7
  SHA256: 9b4ca4eef7afaf99adfd84e9f8199be98be4e1da852fc110b84224d2bb4103d4
0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'show', '--no-all-versions', 'infernal']
0m8.3s INFO: apt-cache knows about the following packages: infernal
0m8.3s INFO: Running scripts pre_install
0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_database-server']
0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_database-server']
0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_exceptions']
0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_exceptions']
0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_extras']
0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_extras']
0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture']
0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture']
0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy']
0m8.6s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian trixie/main amd64 Packages
       release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy']
0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy', 'infernal']
0m8.7s DUMP: 
  infernal:
    Installed: (none)
    Candidate: 1.1.5-2
    Version table:
       1.1.5-2 500
          500 http://deb.debian.org/debian trixie/main amd64 Packages
0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy', 'infernal']
0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', '-y', 'install', 'infernal']
0m10.2s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  The following NEW packages will be installed:
    infernal
  0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
  Need to get 5914 kB of archives.
  After this operation, 52.7 MB of additional disk space will be used.
  Get:1 http://deb.debian.org/debian trixie/main amd64 infernal amd64 1.1.5-2 [5914 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 5914 kB in 0s (57.8 MB/s)
  Selecting previously unselected package infernal.
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5135 files and directories currently installed.)
  Preparing to unpack .../infernal_1.1.5-2_amd64.deb ...
  Unpacking infernal (1.1.5-2) ...
  Setting up infernal (1.1.5-2) ...
0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', '-y', 'install', 'infernal']
0m10.2s INFO: Running scripts post_install
0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_install_exceptions']
0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_install_exceptions']
0m10.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m10.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m10.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpk_277a6i to sid
0m10.6s DEBUG: sources.list:
  deb http://deb.debian.org/debian/ sid main
0m10.6s INFO: Running scripts pre_distupgrade
0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_distupgrade_exceptions']
0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_distupgrade_exceptions']
0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', 'update']
0m14.9s DUMP: 
  Get:1 http://deb.debian.org/debian sid InRelease [202 kB]
  Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB]
  Get:3 http://deb.debian.org/debian sid/main Translation-en [7352 kB]
  Fetched 17.6 MB in 3s (5133 kB/s)
  Reading package lists...
0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', 'update']
0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', '-yf', 'dist-upgrade']
0m17.0s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  Calculating upgrade...
  The following packages will be upgraded:
    gcc-14-base infernal libgcc-s1 libstdc++6
  4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
  Need to get 6770 kB of archives.
  After this operation, 620 kB of additional disk space will be used.
  Get:1 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-11 [48.0 kB]
  Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-11 [713 kB]
  Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-11 [72.7 kB]
  Get:4 http://deb.debian.org/debian sid/main amd64 infernal amd64 1.1.5-3 [5936 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 6770 kB in 0s (81.5 MB/s)
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5344 files and directories currently installed.)
  Preparing to unpack .../gcc-14-base_14.2.0-11_amd64.deb ...
  Unpacking gcc-14-base:amd64 (14.2.0-11) over (14.2.0-8) ...
  Setting up gcc-14-base:amd64 (14.2.0-11) ...
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5344 files and directories currently installed.)
  Preparing to unpack .../libstdc++6_14.2.0-11_amd64.deb ...
  Unpacking libstdc++6:amd64 (14.2.0-11) over (14.2.0-8) ...
  Setting up libstdc++6:amd64 (14.2.0-11) ...
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5344 files and directories currently installed.)
  Preparing to unpack .../libgcc-s1_14.2.0-11_amd64.deb ...
  Unpacking libgcc-s1:amd64 (14.2.0-11) over (14.2.0-8) ...
  Setting up libgcc-s1:amd64 (14.2.0-11) ...
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5344 files and directories currently installed.)
  Preparing to unpack .../infernal_1.1.5-3_amd64.deb ...
  Unpacking infernal (1.1.5-3) over (1.1.5-2) ...
  Setting up infernal (1.1.5-3) ...
  Processing triggers for libc-bin (2.40-4) ...
0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', '-yf', 'dist-upgrade']
0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m17.6s DUMP: 
  e9a31564090703924d419b4a65a5864e  -
0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'show', '--no-all-versions', 'infernal']
0m17.9s DUMP: 
  Package: infernal
  Version: 1.1.5-3
  Installed-Size: 52049
  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libc6 (>= 2.34)
  Description-en: inference of RNA secondary structural alignments
   Infernal ("INFERence of RNA ALignment") searches DNA sequence
   databases for RNA structure and sequence similarities. It provides an
   implementation of a special variant of profile stochastic context-free
   grammars called covariance models (CMs). A CM is like a sequence
   profile, but it scores a combination of sequence consensus and RNA
   secondary structure consensus, so in many cases, it is more capable of
   identifying RNA homologs that conserve their secondary structure more
   than their primary sequence.
   .
   The tool is an integral component of the Rfam database.
  Description-md5: 0fa26f15adcc8d61cdb1b817c872c7ec
  Homepage: http://eddylab.org/infernal/
  Tag: field::biology, field::biology:bioinformatics, implemented-in::c,
   interface::commandline, role::program, use::analysing
  Section: science
  Priority: optional
  Filename: pool/main/i/infernal/infernal_1.1.5-3_amd64.deb
  Size: 5936008
  MD5sum: aafd88a4463186aa940b38a1c5ad23f8
  SHA256: b2209c38d4b0b5158751a8575beca71463fee563dc5e77d8380a2063aeb94d5e
0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'show', '--no-all-versions', 'infernal']
0m17.9s INFO: apt-cache knows about the following packages: infernal
0m17.9s INFO: Running scripts pre_install
0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_database-server']
0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_database-server']
0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_exceptions']
0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_exceptions']
0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_extras']
0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_extras']
0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture']
0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture']
0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy']
0m18.0s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian sid/main amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy']
0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy', 'infernal']
0m18.1s DUMP: 
  infernal:
    Installed: 1.1.5-3
    Candidate: 1.1.5-3
    Version table:
   *** 1.1.5-3 500
          500 http://deb.debian.org/debian sid/main amd64 Packages
          100 /var/lib/dpkg/status
0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy', 'infernal']
0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', '-y', 'install', 'infernal']
0m18.7s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  infernal is already the newest version (1.1.5-3).
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', '-y', 'install', 'infernal']
0m18.7s INFO: Running scripts post_install
0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_install_exceptions']
0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_install_exceptions']
0m18.7s INFO: Running scripts post_distupgrade
0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_distupgrade_base_cleanup']
0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_distupgrade_base_cleanup']
0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_distupgrade_exceptions']
0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_distupgrade_exceptions']
0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_distupgrade_zz_backports']
0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_distupgrade_zz_backports']
0m18.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m19.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m19.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m19.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m19.5s INFO: Running scripts pre_install
0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_database-server']
0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_database-server']
0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_exceptions']
0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_exceptions']
0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_extras']
0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_extras']
0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture']
0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture']
0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy']
0m19.6s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian sid/main amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy']
0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy', 'infernal']
0m19.7s DUMP: 
  infernal:
    Installed: 1.1.5-3
    Candidate: 1.1.5-3
    Version table:
   *** 1.1.5-3 500
          500 http://deb.debian.org/debian sid/main amd64 Packages
          100 /var/lib/dpkg/status
0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-cache', 'policy', 'infernal']
0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', '-y', 'install', 'infernal=1.1.5-3']
0m20.2s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  infernal is already the newest version (1.1.5-3).
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', '-y', 'install', 'infernal=1.1.5-3']
0m20.2s INFO: Running scripts post_install
0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_install_exceptions']
0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_install_exceptions']
0m20.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m20.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m21.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', '-ac', '--ignore-obsolete']
0m22.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', '-ac', '--ignore-obsolete']
0m22.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m22.2s DUMP: 
  0.15.6
0m22.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m22.2s INFO: Running adequate version 0.15.6 now.
0m22.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'infernal']
0m22.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'infernal']
0m22.3s INFO: Running scripts pre_remove
0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_exceptions']
0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/pre_remove_exceptions']
0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m23.0s DUMP: 
  install ok installed	apt	apt	2.9.17
  install ok installed	base-files	base-files	13.6
  install ok installed	base-passwd	base-passwd	3.6.5
  install ok installed	bash	bash	5.2.37-1
  install ok installed	bsdutils	bsdutils	1:2.40.2-12
  install ok installed	coreutils	coreutils	9.5-1+b1
  install ok installed	dash	dash	0.5.12-9
  install ok installed	debconf	debconf	1.5.87
  install ok installed	debian-archive-keyring	debian-archive-keyring	2023.4
  install ok installed	debianutils	debianutils	5.21
  install ok installed	diffutils	diffutils	1:3.10-1
  install ok installed	dpkg	dpkg	1.22.11
  install ok installed	e2fsprogs	e2fsprogs	1.47.2~rc1-2
  install ok installed	findutils	findutils	4.10.0-3
  install ok installed	gcc-14-base:amd64	gcc-14-base	14.2.0-11
  install ok installed	gpgv	gpgv	2.2.45-2
  install ok installed	grep	grep	3.11-4
  install ok installed	gzip	gzip	1.12-1.2
  install ok installed	hostname	hostname	3.25
  install ok installed	infernal	infernal	1.1.5-3
  install ok installed	init-system-helpers	init-system-helpers	1.67
  install ok installed	libacl1:amd64	libacl1	2.3.2-2+b1
  install ok installed	libapt-pkg6.0t64:amd64	libapt-pkg6.0t64	2.9.17
  install ok installed	libattr1:amd64	libattr1	1:2.5.2-2
  install ok installed	libaudit-common	libaudit-common	1:4.0.2-2
  install ok installed	libaudit1:amd64	libaudit1	1:4.0.2-2
  install ok installed	libblkid1:amd64	libblkid1	2.40.2-12
  install ok installed	libbsd0:amd64	libbsd0	0.12.2-2
  install ok installed	libbz2-1.0:amd64	libbz2-1.0	1.0.8-6
  install ok installed	libc-bin	libc-bin	2.40-4
  install ok installed	libc6:amd64	libc6	2.40-4
  install ok installed	libcap-ng0:amd64	libcap-ng0	0.8.5-4
  install ok installed	libcap2:amd64	libcap2	1:2.66-5+b1
  install ok installed	libcom-err2:amd64	libcom-err2	1.47.2~rc1-2
  install ok installed	libcrypt1:amd64	libcrypt1	1:4.4.36-5
  install ok installed	libdb5.3t64:amd64	libdb5.3t64	5.3.28+dfsg2-9
  install ok installed	libdebconfclient0:amd64	libdebconfclient0	0.274
  install ok installed	libext2fs2t64:amd64	libext2fs2t64	1.47.2~rc1-2
  install ok installed	libffi8:amd64	libffi8	3.4.6-1
  install ok installed	libgcc-s1:amd64	libgcc-s1	14.2.0-11
  install ok installed	libgcrypt20:amd64	libgcrypt20	1.11.0-6
  install ok installed	libgmp10:amd64	libgmp10	2:6.3.0+dfsg-3
  install ok installed	libgnutls30t64:amd64	libgnutls30t64	3.8.8-2
  install ok installed	libgpg-error0:amd64	libgpg-error0	1.51-2
  install ok installed	libhogweed6t64:amd64	libhogweed6t64	3.10-1+b1
  install ok installed	libidn2-0:amd64	libidn2-0	2.3.7-2+b1
  install ok installed	liblz4-1:amd64	liblz4-1	1.9.4-3+b1
  install ok installed	liblzma5:amd64	liblzma5	5.6.3-1+b1
  install ok installed	libmd0:amd64	libmd0	1.1.0-2+b1
  install ok installed	libmount1:amd64	libmount1	2.40.2-12
  install ok installed	libnettle8t64:amd64	libnettle8t64	3.10-1+b1
  install ok installed	libp11-kit0:amd64	libp11-kit0	0.25.5-2+b1
  install ok installed	libpam-modules:amd64	libpam-modules	1.5.3-7+b1
  install ok installed	libpam-modules-bin	libpam-modules-bin	1.5.3-7+b1
  install ok installed	libpam-runtime	libpam-runtime	1.5.3-7
  install ok installed	libpam0g:amd64	libpam0g	1.5.3-7+b1
  install ok installed	libpcre2-8-0:amd64	libpcre2-8-0	10.44-5
  install ok installed	libseccomp2:amd64	libseccomp2	2.5.5-2
  install ok installed	libselinux1:amd64	libselinux1	3.7-3+b1
  install ok installed	libsemanage-common	libsemanage-common	3.7-2
  install ok installed	libsemanage2:amd64	libsemanage2	3.7-2+b1
  install ok installed	libsepol2:amd64	libsepol2	3.7-1
  install ok installed	libsmartcols1:amd64	libsmartcols1	2.40.2-12
  install ok installed	libss2:amd64	libss2	1.47.2~rc1-2
  install ok installed	libssl3t64:amd64	libssl3t64	3.3.2-2
  install ok installed	libstdc++6:amd64	libstdc++6	14.2.0-11
  install ok installed	libsystemd0:amd64	libsystemd0	257-2
  install ok installed	libtasn1-6:amd64	libtasn1-6	4.19.0-3+b3
  install ok installed	libtinfo6:amd64	libtinfo6	6.5-2+b1
  install ok installed	libudev1:amd64	libudev1	257-2
  install ok installed	libunistring5:amd64	libunistring5	1.3-1
  install ok installed	libuuid1:amd64	libuuid1	2.40.2-12
  install ok installed	libxxhash0:amd64	libxxhash0	0.8.2-2+b2
  install ok installed	libzstd1:amd64	libzstd1	1.5.6+dfsg-1+b1
  install ok installed	login	login	1:4.16.0-2+really2.40.2-12
  install ok installed	login.defs	login.defs	1:4.16.0-7
  install ok installed	logsave	logsave	1.47.2~rc1-2
  install ok installed	mawk	mawk	1.3.4.20240905-1
  install ok installed	mount	mount	2.40.2-12
  install ok installed	ncurses-base	ncurses-base	6.5-2
  install ok installed	ncurses-bin	ncurses-bin	6.5-2+b1
  install ok installed	openssl-provider-legacy	openssl-provider-legacy	3.3.2-2
  install ok installed	passwd	passwd	1:4.16.0-7
  install ok installed	perl-base	perl-base	5.40.0-8
  install ok installed	sed	sed	4.9-2
  install ok installed	sysvinit-utils	sysvinit-utils	3.11-1
  install ok installed	tar	tar	1.35+dfsg-3
  install ok installed	tzdata	tzdata	2024b-4
  install ok installed	usr-is-merged	usr-is-merged	39
  install ok installed	util-linux	util-linux	2.40.2-12
  install ok installed	zlib1g:amd64	zlib1g	1:1.3.dfsg+really1.3.1-1+b1
0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', 'remove', 'infernal']
0m23.9s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  The following packages will be REMOVED:
    infernal
  0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
  After this operation, 53.3 MB disk space will be freed.
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5344 files and directories currently installed.)
  Removing infernal (1.1.5-3) ...
0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', 'remove', 'infernal']
0m23.9s INFO: Running scripts post_remove
0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_remove_exceptions']
0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_remove_exceptions']
0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg', '--purge', 'infernal']
0m23.9s DUMP: 
  dpkg: warning: ignoring request to remove infernal which isn't installed
0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg', '--purge', 'infernal']
0m23.9s INFO: Running scripts post_purge
0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_purge_exceptions']
0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_purge_exceptions']
0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg', '--purge', '--pending']
0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg', '--purge', '--pending']
0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg', '--remove', '--pending']
0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg', '--remove', '--pending']
0m23.9s INFO: Running scripts post_test
0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_test_exceptions']
0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'tmp/scripts/post_test_exceptions']
0m23.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m24.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg-divert', '--list']
0m24.3s DUMP: 
  diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64
  local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
  diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64
  local diversion of /home to /home.distrib
  diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
  diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64
  diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64
  diversion of /libx32 to /.libx32.usr-is-merged by base-files
  local diversion of /usr/bin/sync to /usr/bin/sync.distrib
  diversion of /lib32 to /.lib32.usr-is-merged by base-files
  diversion of /libo32 to /.libo32.usr-is-merged by base-files
0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'dpkg-divert', '--list']
0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', 'clean']
0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk_277a6i', 'apt-get', 'clean']
0m24.3s DEBUG: Recording chroot state
0m25.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/shm']
0m25.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/shm']
0m25.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/console']
0m25.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/console']
0m25.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/ptmx']
0m25.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/ptmx']
0m25.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/pts']
0m25.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/dev/pts']
0m25.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/proc']
0m25.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk_277a6i/proc']
0m25.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m25.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpk_277a6i']
0m25.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpk_277a6i
0m25.3s INFO: PASS: Upgrading between Debian distributions.
0m25.3s INFO: PASS: All tests.
0m25.3s INFO: piuparts run ends.

ret=0
End: 2024-12-17 21:50:02 GMT