Start: 2022-01-21 21:06:58 GMT [testing] Package: iqtree Version: 1.6.12+dfsg-1 Installed-Size: 18804 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc1 (>= 1:4.0), libgomp1 (>= 6), libopenmpi3 (>= 4.0.2), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Description: efficient phylogenetic software by maximum likelihood Homepage: http://www.cibiv.at/software/iqtree/ Description-md5: 74d9431c410fc0f02ede82d14c6a3692 Section: science Priority: optional Filename: pool/main/i/iqtree/iqtree_1.6.12+dfsg-1_amd64.deb Size: 2815008 MD5sum: c991d8c26a38f46666f1dab03ba86ec0 SHA256: 03078cc06a248b1deddb058732b1799e634046019602c0535ee8b4885b239151 [sid] Package: iqtree Version: 2.0.7+dfsg-1 Installed-Size: 23912 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.33), libgcc-s1 (>= 4.0), libgomp1 (>= 6), libopenmpi3 (>= 4.1.2), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) Description: efficient phylogenetic software by maximum likelihood Homepage: http://www.cibiv.at/software/iqtree/ Description-md5: 74d9431c410fc0f02ede82d14c6a3692 Section: science Priority: optional Filename: pool/main/i/iqtree/iqtree_2.0.7+dfsg-1_amd64.deb Size: 3458220 MD5sum: 7703510fcab8bc249e691508e7d4ff56 SHA256: 0898846d540d537cb9cdeaf488ae52d405f8d4ab4fecb3f53555607a17ebd44c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt iqtree=2.0.7+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt iqtree=2.0.7+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-18-amd64 #1 SMP Debian 4.19.208-1 (2021-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp9b_uw_8m 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp9b_uw_8m 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/proc'] 0m2.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/proc'] 0m2.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/pts'] 0m2.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/pts'] 0m2.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/ptmx'] 0m2.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/ptmx'] 0m2.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/console'] 0m2.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/console'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/shm'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/shm'] 0m2.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.5s DEBUG: Created policy-rc.d and chmodded it. 0m2.5s DEBUG: Created resolv.conf. 0m2.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp9b_uw_8m/tmp/scripts/ 0m2.5s INFO: Running scripts post_chroot_unpack 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', 'update'] 0m5.9s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [129 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8240 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5664 kB] Fetched 14.0 MB in 2s (5885 kB/s) Reading package lists... 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', 'update'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', '-yf', 'dist-upgrade'] 0m7.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-10-base gcc-11-base libgcc-s1 libstdc++6 libsystemd0 libudev1 libxxhash0 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1641 kB of archives. After this operation, 9216 B disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 250.3-1 [404 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 gcc-11-base amd64 11.2.0-14 [207 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libstdc++6 amd64 11.2.0-14 [577 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libgcc-s1 amd64 11.2.0-14 [42.0 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 250.3-1 [178 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libxxhash0 amd64 0.8.1-1 [27.6 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 gcc-10-base amd64 10.3.0-14 [206 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1641 kB in 0s (23.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../libsystemd0_250.3-1_amd64.deb ... Unpacking libsystemd0:amd64 (250.3-1) over (250.2-3) ... Setting up libsystemd0:amd64 (250.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../gcc-11-base_11.2.0-14_amd64.deb ... Unpacking gcc-11-base:amd64 (11.2.0-14) over (11.2.0-13) ... Setting up gcc-11-base:amd64 (11.2.0-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../libstdc++6_11.2.0-14_amd64.deb ... Unpacking libstdc++6:amd64 (11.2.0-14) over (11.2.0-13) ... Setting up libstdc++6:amd64 (11.2.0-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11.2.0-14_amd64.deb ... Unpacking libgcc-s1:amd64 (11.2.0-14) over (11.2.0-13) ... Setting up libgcc-s1:amd64 (11.2.0-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../libudev1_250.3-1_amd64.deb ... Unpacking libudev1:amd64 (250.3-1) over (250.2-3) ... Setting up libudev1:amd64 (250.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.1-1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.1-1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10.3.0-14_amd64.deb ... Unpacking gcc-10-base:amd64 (10.3.0-14) over (10.3.0-13) ... Setting up gcc-10-base:amd64 (10.3.0-14) ... Processing triggers for libc-bin (2.33-2) ... 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', '-yf', 'dist-upgrade'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.8s DUMP: 2c453ce148ef822dd03a47127605b592 - 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.8s INFO: Running scripts post_setup 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_dummy_users'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_dummy_users'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_forbid_home'] 0m8.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_forbid_home'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_minimize'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_minimize'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_zz_backports'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_setup_zz_backports'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.9s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.14 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.2-6 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-14 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-14 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.61 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.14 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-2 install ok installed libc6:amd64 libc6 2.33-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-6 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-6 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 250.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.3-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-6 install ok installed ncurses-base ncurses-base 6.3-1 install ok installed ncurses-bin ncurses-bin 6.3-1 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl-base perl-base 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m9.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m9.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m9.3s INFO: Running scripts is_testable 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s INFO: Running scripts pre_test 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_test_root_password'] 0m9.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_test_root_password'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'show', '--no-all-versions', 'iqtree'] 0m9.6s DUMP: Package: iqtree Version: 1.6.12+dfsg-1 Installed-Size: 18804 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc1 (>= 1:4.0), libgomp1 (>= 6), libopenmpi3 (>= 4.0.2), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Description-en: efficient phylogenetic software by maximum likelihood IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others: . * A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms of likelihood while requiring similar amount of computing time (see Nguyen et al., 2015) * An ultrafast bootstrap approximation to assess branch supports (see Minh et al., 2013). * A wide range of substitution models for binary, DNA, protein, codon, and morphological alignments. * Ultrafast model selection for all data types, 10 to 100 times faster than jModelTest and ProtTest. * Finding best partition scheme like PartitionFinder. * Partitioned models with mixed data types for phylogenomic (multi- gene) alignments, allowing for separate, proportional, or joint branch lengths among genes. * Supporting the phylogenetic likelihod library (PLL) (see Flouri et al., 2014) Description-md5: 74d9431c410fc0f02ede82d14c6a3692 Homepage: http://www.cibiv.at/software/iqtree/ Section: science Priority: optional Filename: pool/main/i/iqtree/iqtree_1.6.12+dfsg-1_amd64.deb Size: 2815008 MD5sum: c991d8c26a38f46666f1dab03ba86ec0 SHA256: 03078cc06a248b1deddb058732b1799e634046019602c0535ee8b4885b239151 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'show', '--no-all-versions', 'iqtree'] 0m9.6s INFO: apt-cache knows about the following packages: iqtree 0m9.6s INFO: Running scripts pre_install 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_database-server'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_database-server'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_exceptions'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_exceptions'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_extras'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_extras'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy'] 0m9.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy', 'iqtree'] 0m9.7s DUMP: iqtree: Installed: (none) Candidate: 1.6.12+dfsg-1 Version table: 1.6.12+dfsg-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy', 'iqtree'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', '-y', 'install', 'iqtree'] 0m14.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ibverbs-providers libbrotli1 libbsd0 libcurl3-gnutls libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libgomp1 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libldap-2.4-2 libmd0 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsl5 libpsm-infinipath1 libpsm2-2 librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 Suggested packages: libhwloc-contrib-plugins pciutils opencl-icd Recommended packages: ca-certificates libldap-common publicsuffix libsasl2-modules The following NEW packages will be installed: ibverbs-providers iqtree libbrotli1 libbsd0 libcurl3-gnutls libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libgomp1 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libldap-2.4-2 libmd0 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsl5 libpsm-infinipath1 libpsm2-2 librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 21.0 MB of archives. After this operation, 83.6 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 38.0-1 [61.4 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 38.0-1 [314 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 11.2.0-14 [106 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [169 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.14-3 [24.4 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 38.0-1 [69.3 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.11.0-3 [521 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.7.0-1 [155 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b3 [276 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg2-3 [74.1 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.27+dfsg2-3 [111 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libldap-2.4-2 amd64 2.4.59+dfsg-1 [232 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-2 [178 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.81.0-1 [353 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.16-3 [53.7 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-1 [29.6 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.7.2-2 [311 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.7.2-2+b1 [772 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.12+dfsg-5+b1 [701 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 470.94-1 [27.2 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.2.14-3 [42.6 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.7.0-1 [21.7 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.1.1~rc6-1 [575 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.12.0-1 [827 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.2-1 [2419 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 iqtree amd64 1.6.12+dfsg-1 [2815 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.0 MB in 0s (66.6 MB/s) Selecting previously unselected package libnl-3-200:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6676 files and directories currently installed.) Preparing to unpack .../00-libnl-3-200_3.4.0-1+b1_amd64.deb ... Unpacking libnl-3-200:amd64 (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../01-libnl-route-3-200_3.4.0-1+b1_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.4.0-1+b1) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../02-libibverbs1_38.0-1_amd64.deb ... Unpacking libibverbs1:amd64 (38.0-1) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../03-ibverbs-providers_38.0-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (38.0-1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../04-libgomp1_11.2.0-14_amd64.deb ... Unpacking libgomp1:amd64 (11.2.0-14) ... Selecting previously unselected package libevent-core-2.1-7:amd64. Preparing to unpack .../05-libevent-core-2.1-7_2.1.12-stable-1_amd64.deb ... Unpacking libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Selecting previously unselected package libevent-pthreads-2.1-7:amd64. Preparing to unpack .../06-libevent-pthreads-2.1-7_2.1.12-stable-1_amd64.deb ... Unpacking libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../07-libpsm-infinipath1_3.3+20.604758e7-6.1_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.1) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../08-libnuma1_2.0.14-3_amd64.deb ... Unpacking libnuma1:amd64 (2.0.14-3) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../09-libpsm2-2_11.2.185-1_amd64.deb ... Unpacking libpsm2-2 (11.2.185-1) ... Selecting previously unselected package librdmacm1:amd64. Preparing to unpack .../10-librdmacm1_38.0-1_amd64.deb ... Unpacking librdmacm1:amd64 (38.0-1) ... Selecting previously unselected package libfabric1:amd64. Preparing to unpack .../11-libfabric1_1.11.0-3_amd64.deb ... Unpacking libfabric1:amd64 (1.11.0-3) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../12-libhwloc15_2.7.0-1_amd64.deb ... Unpacking libhwloc15:amd64 (2.7.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../13-libbrotli1_1.0.9-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../14-libsasl2-modules-db_2.1.27+dfsg2-3_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg2-3) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../15-libsasl2-2_2.1.27+dfsg2-3_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg2-3) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../16-libldap-2.4-2_2.4.59+dfsg-1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.59+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../17-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../18-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. 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Selecting previously unselected package libucx0:amd64. Preparing to unpack .../37-libucx0_1.12.0-1_amd64.deb ... Unpacking libucx0:amd64 (1.12.0-1) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../38-libopenmpi3_4.1.2-1_amd64.deb ... Unpacking libopenmpi3:amd64 (4.1.2-1) ... Selecting previously unselected package iqtree. Preparing to unpack .../39-iqtree_1.6.12+dfsg-1_amd64.deb ... Unpacking iqtree (1.6.12+dfsg-1) ... Setting up libpciaccess0:amd64 (0.16-3) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libbrotli1:amd64 (1.0.9-2+b3) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libgomp1:amd64 (11.2.0-14) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg2-3) ... Setting up libx11-data (2:1.7.2-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libhwloc15:amd64 (2.7.0-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg2-3) ... Setting up libnuma1:amd64 (2.0.14-3) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-3) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up libssh2-1:amd64 (1.10.0-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5+b1) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libldap-2.4-2:amd64 (2.4.59+dfsg-1) ... Setting up libcurl3-gnutls:amd64 (7.81.0-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libx11-6:amd64 (2:1.7.2-2+b1) ... Setting up libibverbs1:amd64 (38.0-1) ... Setting up ibverbs-providers:amd64 (38.0-1) ... Setting up libxext6:amd64 (2:1.3.4-1) ... Setting up libxnvctrl0:amd64 (470.94-1) ... Setting up librdmacm1:amd64 (38.0-1) ... Setting up libucx0:amd64 (1.12.0-1) ... Setting up libhwloc-plugins:amd64 (2.7.0-1) ... Setting up libfabric1:amd64 (1.11.0-3) ... Setting up libpmix2:amd64 (4.1.1~rc6-1) ... Setting up libopenmpi3:amd64 (4.1.2-1) ... Setting up iqtree (1.6.12+dfsg-1) ... Processing triggers for libc-bin (2.33-2) ... 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', '-y', 'install', 'iqtree'] 0m14.2s INFO: Running scripts post_install 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_install_exceptions'] 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_install_exceptions'] 0m14.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m14.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m14.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp9b_uw_8m to sid 0m14.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m14.6s INFO: Running scripts pre_distupgrade 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', 'update'] 0m18.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8887 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6667 kB] Fetched 15.7 MB in 3s (5013 kB/s) Reading package lists... 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', 'update'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', '-yf', 'dist-upgrade'] 0m22.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files debianutils iqtree libc-bin libc6 libcrypt1 libffi8 libgnutls30 libgpg-error0 libtinfo6 ncurses-base ncurses-bin 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 9921 kB of archives. After this operation, 5265 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 12.2 [70.1 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.5-1 [93.7 kB] Get:3 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.3-2 [439 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.33-3 [2831 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.33-3 [829 kB] Get:6 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.3-2 [278 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.27-1.1 [89.0 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.2-4 [24.7 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.7.3-2 [1376 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.43-3 [82.2 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.3-2 [349 kB] Get:12 http://deb.debian.org/debian sid/main amd64 iqtree amd64 2.0.7+dfsg-1 [3458 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9921 kB in 1s (7932 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7500 files and directories currently installed.) Preparing to unpack .../base-files_12.2_amd64.deb ... Unpacking base-files (12.2) over (12) ... Setting up base-files (12.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7500 files and directories currently installed.) Preparing to unpack .../debianutils_5.5-1_amd64.deb ... Unpacking debianutils (5.5-1) over (4.11.2) ... Setting up debianutils (5.5-1) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7496 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.3-2_amd64.deb ... Unpacking ncurses-bin (6.3-2) over (6.3-1) ... Setting up ncurses-bin (6.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7496 files and directories currently installed.) Preparing to unpack .../libc6_2.33-3_amd64.deb ... Unpacking libc6:amd64 (2.33-3) over (2.33-2) ... Setting up libc6:amd64 (2.33-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7496 files and directories currently installed.) Preparing to unpack .../libc-bin_2.33-3_amd64.deb ... Unpacking libc-bin (2.33-3) over (2.33-2) ... Setting up libc-bin (2.33-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7496 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.3-2_all.deb ... Unpacking ncurses-base (6.3-2) over (6.3-1) ... Setting up ncurses-base (6.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7497 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.27-1.1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.27-1.1) over (1:4.4.27-1) ... Setting up libcrypt1:amd64 (1:4.4.27-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7497 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.2-4_amd64.deb ... Unpacking libffi8:amd64 (3.4.2-4) over (3.4.2-3) ... Setting up libffi8:amd64 (3.4.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7497 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.3-2_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.3-2) over (3.7.2-5) ... Setting up libgnutls30:amd64 (3.7.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7497 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.43-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.43-3) over (1.43-1) ... Setting up libgpg-error0:amd64 (1.43-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7497 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.3-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.3-2) over (6.3-1) ... Setting up libtinfo6:amd64 (6.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7496 files and directories currently installed.) Preparing to unpack .../iqtree_2.0.7+dfsg-1_amd64.deb ... Unpacking iqtree (2.0.7+dfsg-1) over (1.6.12+dfsg-1) ... Setting up iqtree (2.0.7+dfsg-1) ... Processing triggers for libc-bin (2.33-3) ... 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', '-yf', 'dist-upgrade'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.1s DUMP: cb76f007f06080c1a1627f711fceb6dc - 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'show', '--no-all-versions', 'iqtree'] 0m23.3s DUMP: Package: iqtree Version: 2.0.7+dfsg-1 Installed-Size: 23912 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.33), libgcc-s1 (>= 4.0), libgomp1 (>= 6), libopenmpi3 (>= 4.1.2), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) Description-en: efficient phylogenetic software by maximum likelihood IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others: . * A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms of likelihood while requiring similar amount of computing time (see Nguyen et al., 2015) * An ultrafast bootstrap approximation to assess branch supports (see Minh et al., 2013). * A wide range of substitution models for binary, DNA, protein, codon, and morphological alignments. * Ultrafast model selection for all data types, 10 to 100 times faster than jModelTest and ProtTest. * Finding best partition scheme like PartitionFinder. * Partitioned models with mixed data types for phylogenomic (multi- gene) alignments, allowing for separate, proportional, or joint branch lengths among genes. * Supporting the phylogenetic likelihod library (PLL) (see Flouri et al., 2014) Description-md5: 74d9431c410fc0f02ede82d14c6a3692 Homepage: http://www.cibiv.at/software/iqtree/ Section: science Priority: optional Filename: pool/main/i/iqtree/iqtree_2.0.7+dfsg-1_amd64.deb Size: 3458220 MD5sum: 7703510fcab8bc249e691508e7d4ff56 SHA256: 0898846d540d537cb9cdeaf488ae52d405f8d4ab4fecb3f53555607a17ebd44c 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'show', '--no-all-versions', 'iqtree'] 0m23.3s INFO: apt-cache knows about the following packages: iqtree 0m23.3s INFO: Running scripts pre_install 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_database-server'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_database-server'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_exceptions'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_exceptions'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_extras'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_extras'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy'] 0m23.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy', 'iqtree'] 0m23.4s DUMP: iqtree: Installed: 2.0.7+dfsg-1 Candidate: 2.0.7+dfsg-1 Version table: *** 2.0.7+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy', 'iqtree'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', '-y', 'install', 'iqtree'] 0m23.9s DUMP: Reading package lists... Building dependency tree... Reading state information... iqtree is already the newest version (2.0.7+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', '-y', 'install', 'iqtree'] 0m23.9s INFO: Running scripts post_install 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_install_exceptions'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_install_exceptions'] 0m23.9s INFO: Running scripts post_distupgrade 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_distupgrade_zz_backports'] 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_distupgrade_zz_backports'] 0m24.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m24.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m24.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m24.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m24.8s INFO: Running scripts pre_install 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_database-server'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_database-server'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_exceptions'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_exceptions'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_extras'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_extras'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy'] 0m24.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy', 'iqtree'] 0m24.9s DUMP: iqtree: Installed: 2.0.7+dfsg-1 Candidate: 2.0.7+dfsg-1 Version table: *** 2.0.7+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-cache', 'policy', 'iqtree'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', '-y', 'install', 'iqtree=2.0.7+dfsg-1'] 0m25.2s DUMP: Reading package lists... Building dependency tree... Reading state information... iqtree is already the newest version (2.0.7+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', '-y', 'install', 'iqtree=2.0.7+dfsg-1'] 0m25.2s INFO: Running scripts post_install 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_install_exceptions'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_install_exceptions'] 0m25.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m25.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m26.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', '-ac', '--ignore-obsolete'] 0m27.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', '-ac', '--ignore-obsolete'] 0m27.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.0s DUMP: 0.15.2 0m27.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.0s INFO: Running adequate version 0.15.2 now. 0m27.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'iqtree'] 0m27.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'iqtree'] 0m27.1s INFO: Running scripts pre_remove 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_exceptions'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/pre_remove_exceptions'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.7s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.14 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.2-6 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.5-1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-14 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-14 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed ibverbs-providers:amd64 ibverbs-providers 38.0-1 install ok installed init-system-helpers init-system-helpers 1.61 install ok installed iqtree iqtree 2.0.7+dfsg-1 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.14 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.2-6 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b3 install ok installed libbsd0:amd64 libbsd0 0.11.3-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-3 install ok installed libc6:amd64 libc6 2.33-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.81.0-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-1 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libfabric1:amd64 libfabric1 1.11.0-3 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.3-2 install ok installed libgomp1:amd64 libgomp1 11.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.7.0-1 install ok installed libhwloc15:amd64 libhwloc15 2.7.0-1 install ok installed libibverbs1:amd64 libibverbs1 38.0-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.59+dfsg-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmd0:amd64 libmd0 1.0.4-1 install ok installed libmount1:amd64 libmount1 2.37.2-6 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnuma1:amd64 libnuma1 2.0.14-3 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.2-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpmix2:amd64 libpmix2 4.1.1~rc6-1 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.1 install ok installed libpsm2-2 libpsm2-2 11.2.185-1 install ok installed librdmacm1:amd64 librdmacm1 38.0-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg2-3 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg2-3 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-6 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 250.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libucx0:amd64 libucx0 1.12.0-1 install ok installed libudev1:amd64 libudev1 250.3-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-6 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-2+b1 install ok installed libx11-data libx11-data 2:1.7.2-2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1 install ok installed libxml2:amd64 libxml2 2.9.12+dfsg-5+b1 install ok installed libxnvctrl0:amd64 libxnvctrl0 470.94-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-6 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.14-3 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl-base perl-base 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', 'remove', 'ibverbs-providers:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libgomp1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libldap-2.4-2:amd64', 'libmd0:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'iqtree'] 0m29.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ibverbs-providers iqtree libbrotli1 libbsd0 libcurl3-gnutls libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libgomp1 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libldap-2.4-2 libmd0 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsl5 libpsm-infinipath1 libpsm2-2 librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 0 upgraded, 0 newly installed, 40 to remove and 0 not upgraded. After this operation, 88.8 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7496 files and directories currently installed.) Removing iqtree (2.0.7+dfsg-1) ... Removing libopenmpi3:amd64 (4.1.2-1) ... Removing libucx0:amd64 (1.12.0-1) ... Removing libfabric1:amd64 (1.11.0-3) ... Removing ibverbs-providers:amd64 (38.0-1) ... Removing libpmix2:amd64 (4.1.1~rc6-1) ... Removing libcurl3-gnutls:amd64 (7.81.0-1) ... Removing libbrotli1:amd64 (1.0.9-2+b3) ... Removing libhwloc-plugins:amd64 (2.7.0-1) ... Removing libxnvctrl0:amd64 (470.94-1) ... Removing libxext6:amd64 (2:1.3.4-1) ... Removing libx11-6:amd64 (2:1.7.2-2+b1) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Removing libgomp1:amd64 (11.2.0-14) ... Removing libhwloc15:amd64 (2.7.0-1) ... Removing librdmacm1:amd64 (38.0-1) ... Removing libibverbs1:amd64 (38.0-1) ... Removing libxml2:amd64 (2.9.12+dfsg-5+b1) ... Removing libicu67:amd64 (67.1-7) ... Removing libldap-2.4-2:amd64 (2.4.59+dfsg-1) ... Removing libmd0:amd64 (1.0.4-1) ... Removing libnghttp2-14:amd64 (1.43.0-1) ... Removing libnl-route-3-200:amd64 (3.4.0-1+b1) ... Removing libnl-3-200:amd64 (3.4.0-1+b1) ... Removing libpsm2-2 (11.2.185-1) ... Removing libnuma1:amd64 (2.0.14-3) ... Removing libpciaccess0:amd64 (0.16-3) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg2-3) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg2-3) ... Removing libssh2-1:amd64 (1.10.0-2) ... Removing libx11-data (2:1.7.2-2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing ocl-icd-libopencl1:amd64 (2.2.14-3) ... Processing triggers for libc-bin (2.33-3) ... 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', 'remove', 'ibverbs-providers:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libgomp1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libldap-2.4-2:amd64', 'libmd0:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'iqtree'] 0m29.7s INFO: Running scripts post_remove 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_remove_exceptions'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_remove_exceptions'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libgomp1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libldap-2.4-2:amd64', 'libmd0:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64'] 0m29.8s DUMP: (Reading database ... 6691 files and directories currently installed.) Purging configuration files for ibverbs-providers:amd64 (38.0-1) ... dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.4.0-1+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.1) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libgomp1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libldap-2.4-2:amd64', 'libmd0:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg', '--purge', 'iqtree'] 0m29.8s DUMP: dpkg: warning: ignoring request to remove iqtree which isn't installed 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg', '--purge', 'iqtree'] 0m29.8s INFO: Running scripts post_purge 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_purge_exceptions'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_purge_exceptions'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg', '--purge', '--pending'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg', '--purge', '--pending'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg', '--remove', '--pending'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg', '--remove', '--pending'] 0m29.8s INFO: Running scripts post_test 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_test_exceptions'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'tmp/scripts/post_test_exceptions'] 0m29.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m30.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg-divert', '--list'] 0m30.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'dpkg-divert', '--list'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', 'clean'] 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m', 'apt-get', 'clean'] 0m30.2s DEBUG: Recording chroot state 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/shm'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/shm'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/console'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/console'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/ptmx'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/ptmx'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/pts'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/dev/pts'] 0m31.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/proc'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m/proc'] 0m31.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m31.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9b_uw_8m'] 0m31.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp9b_uw_8m 0m31.1s INFO: PASS: Upgrading between Debian distributions. 0m31.1s INFO: PASS: All tests. 0m31.1s INFO: piuparts run ends. ret=0 End: 2022-01-21 21:07:29 GMT