Start: 2020-02-12 20:36:36 GMT [testing] Package: lambda-align Version: 1.0.3-5 Installed-Size: 4421 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:3.4), libgomp1 (>= 4.9), libstdc++6 (>= 7), zlib1g (>= 1:1.1.4) Suggests: cwl-runner Description: Local Aligner for Massive Biological DatA Homepage: https://seqan.github.io/lambda Description-md5: 824d9e146ca55261f5f66d6d34b3901a Section: science Priority: optional Filename: pool/main/l/lambda-align/lambda-align_1.0.3-5_amd64.deb Size: 1058320 MD5sum: 0e20e98b7ece7469c3b253e998ca1e77 SHA256: 74eacce5e32af5c10addf6eca11287de383c3b18be779c34a6c947882ac0606d [sid] Package: lambda-align Version: 1.0.3-6 Installed-Size: 4913 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.29), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Suggests: cwl-runner Description: Local Aligner for Massive Biological DatA Homepage: https://seqan.github.io/lambda Description-md5: 824d9e146ca55261f5f66d6d34b3901a Section: science Priority: optional Filename: pool/main/l/lambda-align/lambda-align_1.0.3-6_amd64.deb Size: 1248628 MD5sum: 4e8a16bd68284a0111e840907ffdf387 SHA256: b9d25bca3f4020d11c78d61ad1dda1608eef88ea42254547f8970209280ddb92 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt lambda-align=1.0.3-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.1 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt lambda-align=1.0.3-6 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-8-amd64 #1 SMP Debian 4.19.98-1 (2020-01-26) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpxmdtiz9l 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpxmdtiz9l 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ bullseye main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpxmdtiz9l/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', 'update'] 0m2.9s DUMP: Hit:1 http://mirror-ubc.debian.org/debian bullseye InRelease Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s DUMP: a4d9b90b7e204ff617f7392eb0c57ea5 - 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s INFO: Running scripts post_setup 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.4 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-5 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.5-2 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-25 install ok installed gpgv gpgv 2.2.19-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.9-3+b1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-5 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2+b1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.29-10 install ok installed libc6:amd64 libc6 2.29-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.10-10 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.251 install ok installed libext2fs2:amd64 libext2fs2 1.45.5-2 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi7:amd64 libffi7 3.3-3 install ok installed libgcc1:amd64 libgcc1 1:9.2.1-25 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.11.1-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20191019-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.20-1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.2-2 install ok installed libselinux1:amd64 libselinux1 3.0-1 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.5-2 install ok installed libstdc++6:amd64 libstdc++6 9.2.1-25 install ok installed libsystemd0:amd64 libsystemd0 244.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.15.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20191019-1 install ok installed libudev1:amd64 libudev1 244.1-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-1 install ok installed login login 1:4.8-1 install ok installed logsave logsave 1.45.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-1 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20191019-1 install ok installed ncurses-bin ncurses-bin 6.1+20191019-1 install ok installed passwd passwd 1:4.8-1 install ok installed perl-base perl-base 5.30.0-9 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-2.1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1.2 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m4.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m4.6s INFO: Running scripts is_testable 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s INFO: Running scripts pre_test 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_test_root_password'] 0m4.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_test_root_password'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'show', '--no-all-versions', 'lambda-align'] 0m4.8s DUMP: Package: lambda-align Version: 1.0.3-5 Installed-Size: 4421 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:3.4), libgomp1 (>= 4.9), libstdc++6 (>= 7), zlib1g (>= 1:1.1.4) Suggests: cwl-runner Description-en: Local Aligner for Massive Biological DatA Lambda is a local biosequence aligner optimized for many query sequences and searches in protein space. It is compatible to the de facto standard tool BLAST, but often outperforms the best currently available alternatives at reproducing BLAST??s results and is the fastest compared with the current state of the art at comparable levels of sensitivity. Description-md5: 824d9e146ca55261f5f66d6d34b3901a Homepage: https://seqan.github.io/lambda Section: science Priority: optional Filename: pool/main/l/lambda-align/lambda-align_1.0.3-5_amd64.deb Size: 1058320 MD5sum: 0e20e98b7ece7469c3b253e998ca1e77 SHA256: 74eacce5e32af5c10addf6eca11287de383c3b18be779c34a6c947882ac0606d 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'show', '--no-all-versions', 'lambda-align'] 0m4.8s INFO: apt-cache knows about the following packages: lambda-align 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy'] 0m4.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy', 'lambda-align'] 0m4.9s DUMP: lambda-align: Installed: (none) Candidate: 1.0.3-5 Version table: 1.0.3-5 500 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy', 'lambda-align'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', '-y', 'install', 'lambda-align'] 0m5.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libgomp1 Suggested packages: cwl-runner The following NEW packages will be installed: lambda-align libgomp1 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 1146 kB of archives. After this operation, 4779 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgomp1 amd64 9.2.1-25 [88.1 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 lambda-align amd64 1.0.3-5 [1058 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1146 kB in 0s (28.6 MB/s) Selecting previously unselected package libgomp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6533 files and directories currently installed.) Preparing to unpack .../libgomp1_9.2.1-25_amd64.deb ... Unpacking libgomp1:amd64 (9.2.1-25) ... Selecting previously unselected package lambda-align. Preparing to unpack .../lambda-align_1.0.3-5_amd64.deb ... Unpacking lambda-align (1.0.3-5) ... Setting up libgomp1:amd64 (9.2.1-25) ... Setting up lambda-align (1.0.3-5) ... Processing triggers for libc-bin (2.29-10) ... 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', '-y', 'install', 'lambda-align'] 0m5.7s INFO: Running scripts post_install 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_install_exceptions'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_install_exceptions'] 0m5.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m6.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m6.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpxmdtiz9l to sid 0m6.0s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m6.0s INFO: Running scripts pre_distupgrade 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', 'update'] 0m9.7s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [142 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8308 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6198 kB] Fetched 14.6 MB in 3s (5340 kB/s) Reading package lists... 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', 'update'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', '-yf', 'dist-upgrade'] 0m11.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-10-base libgcc-s1 The following packages will be upgraded: gcc-9-base lambda-align libgcc1 libgmp10 libgomp1 libstdc++6 libsystemd0 libudev1 login passwd 10 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 4721 kB of archives. After this operation, 878 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 login amd64 1:4.8.1-1 [655 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 libsystemd0 amd64 244.2-1 [348 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 gcc-10-base amd64 10-20200211-1 [195 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 passwd amd64 1:4.8.1-1 [990 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libgcc-s1 amd64 10-20200211-1 [41.5 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 libgcc1 amd64 1:10-20200211-1 [41.5 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.2.0+dfsg-3 [253 kB] Get:8 http://mirror-ubc.debian.org/debian sid/main amd64 libstdc++6 amd64 10-20200211-1 [491 kB] Get:9 http://mirror-ubc.debian.org/debian sid/main amd64 libudev1 amd64 244.2-1 [163 kB] Get:10 http://mirror-ubc.debian.org/debian sid/main amd64 libgomp1 amd64 10-20200211-1 [99.1 kB] Get:11 http://mirror-ubc.debian.org/debian sid/main amd64 gcc-9-base amd64 9.2.1-28 [195 kB] Get:12 http://mirror-ubc.debian.org/debian sid/main amd64 lambda-align amd64 1.0.3-6 [1249 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4721 kB in 0s (70.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6546 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-1_amd64.deb ... Unpacking login (1:4.8.1-1) over (1:4.8-1) ... Setting up login (1:4.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6546 files and directories currently installed.) Preparing to unpack .../libsystemd0_244.2-1_amd64.deb ... Unpacking libsystemd0:amd64 (244.2-1) over (244.1-1) ... Setting up libsystemd0:amd64 (244.2-1) ... Selecting previously unselected package gcc-10-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6546 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10-20200211-1_amd64.deb ... Unpacking gcc-10-base:amd64 (10-20200211-1) ... Setting up gcc-10-base:amd64 (10-20200211-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6552 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.8.1-1_amd64.deb ... Unpacking passwd (1:4.8.1-1) over (1:4.8-1) ... Setting up passwd (1:4.8.1-1) ... Installing new version of config file /etc/default/useradd ... Selecting previously unselected package libgcc-s1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6552 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200211-1_amd64.deb ... Unpacking libgcc-s1:amd64 (10-20200211-1) ... Replacing files in old package libgcc1:amd64 (1:9.2.1-25) ... Setting up libgcc-s1:amd64 (10-20200211-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6554 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a10-20200211-1_amd64.deb ... Unpacking libgcc1 (1:10-20200211-1) over (1:9.2.1-25) ... Setting up libgcc1 (1:10-20200211-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6555 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-3_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.0+dfsg-3) over (2:6.1.2+dfsg-4) ... Setting up libgmp10:amd64 (2:6.2.0+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6555 files and directories currently installed.) Preparing to unpack .../libstdc++6_10-20200211-1_amd64.deb ... Unpacking libstdc++6:amd64 (10-20200211-1) over (9.2.1-25) ... Setting up libstdc++6:amd64 (10-20200211-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6555 files and directories currently installed.) Preparing to unpack .../libudev1_244.2-1_amd64.deb ... Unpacking libudev1:amd64 (244.2-1) over (244.1-1) ... Setting up libudev1:amd64 (244.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6555 files and directories currently installed.) Preparing to unpack .../libgomp1_10-20200211-1_amd64.deb ... Unpacking libgomp1:amd64 (10-20200211-1) over (9.2.1-25) ... Preparing to unpack .../gcc-9-base_9.2.1-28_amd64.deb ... Unpacking gcc-9-base:amd64 (9.2.1-28) over (9.2.1-25) ... Preparing to unpack .../lambda-align_1.0.3-6_amd64.deb ... Unpacking lambda-align (1.0.3-6) over (1.0.3-5) ... Setting up libgomp1:amd64 (10-20200211-1) ... Setting up lambda-align (1.0.3-6) ... Setting up gcc-9-base:amd64 (9.2.1-28) ... Processing triggers for libc-bin (2.29-10) ... 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', '-yf', 'dist-upgrade'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m11.5s DUMP: a5c26ac6ccf31c8e2479d1056998abf4 - 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'show', '--no-all-versions', 'lambda-align'] 0m11.7s DUMP: Package: lambda-align Version: 1.0.3-6 Installed-Size: 4913 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.29), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Suggests: cwl-runner Description-en: Local Aligner for Massive Biological DatA Lambda is a local biosequence aligner optimized for many query sequences and searches in protein space. It is compatible to the de facto standard tool BLAST, but often outperforms the best currently available alternatives at reproducing BLAST??s results and is the fastest compared with the current state of the art at comparable levels of sensitivity. Description-md5: 824d9e146ca55261f5f66d6d34b3901a Homepage: https://seqan.github.io/lambda Section: science Priority: optional Filename: pool/main/l/lambda-align/lambda-align_1.0.3-6_amd64.deb Size: 1248628 MD5sum: 4e8a16bd68284a0111e840907ffdf387 SHA256: b9d25bca3f4020d11c78d61ad1dda1608eef88ea42254547f8970209280ddb92 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'show', '--no-all-versions', 'lambda-align'] 0m11.7s INFO: apt-cache knows about the following packages: lambda-align 0m11.7s INFO: Running scripts pre_install 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_database-server'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_database-server'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_exceptions'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_exceptions'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_extras'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_extras'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy'] 0m11.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy', 'lambda-align'] 0m11.8s DUMP: lambda-align: Installed: 1.0.3-6 Candidate: 1.0.3-6 Version table: *** 1.0.3-6 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy', 'lambda-align'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', '-y', 'install', 'lambda-align'] 0m12.2s DUMP: Reading package lists... Building dependency tree... Reading state information... lambda-align is already the newest version (1.0.3-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', '-y', 'install', 'lambda-align'] 0m12.2s INFO: Running scripts post_install 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_install_exceptions'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_install_exceptions'] 0m12.2s INFO: Running scripts post_distupgrade 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_distupgrade_exceptions'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_distupgrade_exceptions'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_distupgrade_zz_backports'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_distupgrade_zz_backports'] 0m12.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m12.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m12.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m12.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m12.9s INFO: Running scripts pre_install 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_database-server'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_database-server'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_exceptions'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_exceptions'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_extras'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_extras'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy'] 0m13.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy', 'lambda-align'] 0m13.0s DUMP: lambda-align: Installed: 1.0.3-6 Candidate: 1.0.3-6 Version table: *** 1.0.3-6 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-cache', 'policy', 'lambda-align'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', '-y', 'install', 'lambda-align=1.0.3-6'] 0m13.4s DUMP: Reading package lists... Building dependency tree... Reading state information... lambda-align is already the newest version (1.0.3-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', '-y', 'install', 'lambda-align=1.0.3-6'] 0m13.4s INFO: Running scripts post_install 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_install_exceptions'] 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_install_exceptions'] 0m13.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m13.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m14.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', '-ac', '--ignore-obsolete'] 0m14.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', '-ac', '--ignore-obsolete'] 0m14.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.5s DUMP: 0.15.2 0m14.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.5s INFO: Running adequate version 0.15.2 now. 0m14.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'lambda-align'] 0m14.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'lambda-align'] 0m14.6s INFO: Running scripts pre_remove 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_exceptions'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/pre_remove_exceptions'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m15.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.4 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-5 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.5-2 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10-20200211-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-28 install ok installed gpgv gpgv 2.2.19-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.9-3+b1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed lambda-align lambda-align 1.0.3-6 install ok installed libacl1:amd64 libacl1 2.2.53-5 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2+b1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.29-10 install ok installed libc6:amd64 libc6 2.29-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.10-10 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.251 install ok installed libext2fs2:amd64 libext2fs2 1.45.5-2 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi7:amd64 libffi7 3.3-3 install ok installed libgcc-s1:amd64 libgcc-s1 10-20200211-1 install ok installed libgcc1 libgcc1 1:10-20200211-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.6.11.1-2 install ok installed libgomp1:amd64 libgomp1 10-20200211-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20191019-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.20-1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.2-2 install ok installed libselinux1:amd64 libselinux1 3.0-1 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.5-2 install ok installed libstdc++6:amd64 libstdc++6 10-20200211-1 install ok installed libsystemd0:amd64 libsystemd0 244.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.15.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20191019-1 install ok installed libudev1:amd64 libudev1 244.2-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-1 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20191019-1 install ok installed ncurses-bin ncurses-bin 6.1+20191019-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.0-9 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-2.1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1.2 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', 'remove', 'libgomp1:amd64', 'lambda-align'] 0m15.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: lambda-align libgomp1 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. After this operation, 5316 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6555 files and directories currently installed.) Removing lambda-align (1.0.3-6) ... Removing libgomp1:amd64 (10-20200211-1) ... Processing triggers for libc-bin (2.29-10) ... 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', 'remove', 'libgomp1:amd64', 'lambda-align'] 0m15.9s INFO: Running scripts post_remove 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_remove_exceptions'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_remove_exceptions'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg', '--purge', 'libgomp1:amd64'] 0m15.9s DUMP: dpkg: warning: ignoring request to remove libgomp1 which isn't installed 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg', '--purge', 'libgomp1:amd64'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg', '--purge', 'lambda-align'] 0m16.0s DUMP: dpkg: warning: ignoring request to remove lambda-align which isn't installed 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg', '--purge', 'lambda-align'] 0m16.0s INFO: Running scripts post_purge 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_purge_exceptions'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_purge_exceptions'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg', '--purge', '--pending'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg', '--purge', '--pending'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg', '--remove', '--pending'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg', '--remove', '--pending'] 0m16.0s INFO: Running scripts post_test 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_test_exceptions'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'tmp/scripts/post_test_exceptions'] 0m16.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m16.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg-divert', '--list'] 0m16.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'dpkg-divert', '--list'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', 'clean'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l', 'apt-get', 'clean'] 0m16.4s DEBUG: Recording chroot state 0m17.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/shm'] 0m17.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/shm'] 0m17.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/console'] 0m17.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/console'] 0m17.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/ptmx'] 0m17.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/ptmx'] 0m17.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/pts'] 0m17.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/dev/pts'] 0m17.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/proc'] 0m17.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l/proc'] 0m17.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m17.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxmdtiz9l'] 0m17.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpxmdtiz9l 0m17.2s INFO: PASS: Upgrading between Debian distributions. 0m17.2s INFO: PASS: All tests. 0m17.2s INFO: piuparts run ends. ret=0 End: 2020-02-12 20:36:53 GMT