Start: 2020-01-14 13:20:51 GMT [testing] Package: libbio-db-gff-perl Version: 1.7.3-2 Installed-Size: 855 Maintainer: Michael R. Crusoe Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl, libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl Breaks: libbio-perl-perl (<< 1.7.3) Description: Storage and retrieval of sequence annotation data Homepage: https://metacpan.org/release/Bio-DB-GFF Description-md5: 1ce05f595fa0ba15a3a25414321787aa Section: perl Priority: optional Filename: pool/main/libb/libbio-db-gff-perl/libbio-db-gff-perl_1.7.3-2_all.deb Size: 273260 MD5sum: 23b0de00e7beb9c79359204d35cdcdb3 SHA256: cbae82d49613ea3fb39296660fffb6c2f46be764268b4ff168aadc6683f9db1d [sid] Package: libbio-db-gff-perl Version: 1.7.4-1 Installed-Size: 855 Maintainer: Michael R. Crusoe Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl Breaks: libbio-perl-perl (<< 1.7.3) Description: Storage and retrieval of sequence annotation data Homepage: https://metacpan.org/release/Bio-DB-GFF Description-md5: 1ce05f595fa0ba15a3a25414321787aa Section: perl Priority: optional Filename: pool/main/libb/libbio-db-gff-perl/libbio-db-gff-perl_1.7.4-1_all.deb Size: 273140 MD5sum: ea80685596373001e5b95b025f315cf4 SHA256: efc74853637a91502af68e6c5df4ba32c98e60c7938e388387276a84057c5d26 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libbio-db-gff-perl=1.7.4-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.0 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libbio-db-gff-perl=1.7.4-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpuqdncxf4 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpuqdncxf4 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ bullseye main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpuqdncxf4/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', 'update'] 0m4.9s DUMP: Get:1 http://mirror-ubc.debian.org/debian bullseye InRelease [113 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages [7602 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main Translation-en [5790 kB] Fetched 13.5 MB in 2s (5537 kB/s) Reading package lists... 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', 'update'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', '-yf', 'dist-upgrade'] 0m6.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: e2fsprogs gpgv libcom-err2 libext2fs2 libss2 logsave 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1663 kB of archives. After this operation, 21.5 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 logsave amd64 1.45.5-2 [72.1 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 libext2fs2 amd64 1.45.5-2 [247 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 e2fsprogs amd64 1.45.5-2 [593 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 gpgv amd64 2.2.19-1 [604 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 libcom-err2 amd64 1.45.5-2 [71.4 kB] Get:6 http://mirror-ubc.debian.org/debian bullseye/main amd64 libss2 amd64 1.45.5-2 [75.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1663 kB in 0s (70.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6533 files and directories currently installed.) Preparing to unpack .../logsave_1.45.5-2_amd64.deb ... Unpacking logsave (1.45.5-2) over (1.45.4-1) ... Preparing to unpack .../libext2fs2_1.45.5-2_amd64.deb ... Unpacking libext2fs2:amd64 (1.45.5-2) over (1.45.4-1) ... Setting up libext2fs2:amd64 (1.45.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6533 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.45.5-2_amd64.deb ... Unpacking e2fsprogs (1.45.5-2) over (1.45.4-1) ... Preparing to unpack .../gpgv_2.2.19-1_amd64.deb ... Unpacking gpgv (2.2.19-1) over (2.2.17-3) ... Setting up gpgv (2.2.19-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6533 files and directories currently installed.) Preparing to unpack .../libcom-err2_1.45.5-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.45.5-2) over (1.45.4-1) ... Preparing to unpack .../libss2_1.45.5-2_amd64.deb ... Unpacking libss2:amd64 (1.45.5-2) over (1.45.4-1) ... Setting up libcom-err2:amd64 (1.45.5-2) ... Setting up libss2:amd64 (1.45.5-2) ... Setting up logsave (1.45.5-2) ... Setting up e2fsprogs (1.45.5-2) ... Processing triggers for libc-bin (2.29-7) ... 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', '-yf', 'dist-upgrade'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s DUMP: c970b77615f33a8af0c60461d3e4f744 - 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s INFO: Running scripts post_setup 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_dummy_users'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_dummy_users'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_minimize'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_minimize'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_zz_backports'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_setup_zz_backports'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.4 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-5 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.5-2 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-22 install ok installed gpgv gpgv 2.2.19-1 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+b1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-5 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2+b1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.29-7 install ok installed libc6:amd64 libc6 2.29-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.10-10 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.250 install ok installed libext2fs2:amd64 libext2fs2 1.45.5-2 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:9.2.1-22 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.11.1-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20191019-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.18.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.2-2 install ok installed libselinux1:amd64 libselinux1 3.0-1 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.5-2 install ok installed libstdc++6:amd64 libstdc++6 9.2.1-22 install ok installed libsystemd0:amd64 libsystemd0 244-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.15.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20191019-1 install ok installed libudev1:amd64 libudev1 244-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-1 install ok installed login login 1:4.8-1 install ok installed logsave logsave 1.45.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20191019-1 install ok installed ncurses-bin ncurses-bin 6.1+20191019-1 install ok installed passwd passwd 1:4.8-1 install ok installed perl-base perl-base 5.30.0-9 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m7.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m7.6s INFO: Running scripts is_testable 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/is_testable_uninstallable'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/is_testable_uninstallable'] 0m7.6s INFO: Running scripts pre_test 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_test_exceptions'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_test_exceptions'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_test_root_password'] 0m7.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_test_root_password'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'show', '--no-all-versions', 'libbio-db-gff-perl'] 0m7.8s DUMP: Package: libbio-db-gff-perl Version: 1.7.3-2 Installed-Size: 855 Maintainer: Michael R. Crusoe Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl, libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl Breaks: libbio-perl-perl (<< 1.7.3) Description-en: Storage and retrieval of sequence annotation data Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. . The following operations are supported by this module: . - retrieving a segment of sequence based on the ID of a landmark . - retrieving the DNA from that segment . - finding all annotations that overlap with the segment . - finding all annotations that are completely contained within the segment . - retrieving all annotations of a particular type, either within a segment, or globally . - conversion from absolute to relative coordinates and back again, using any arbitrary landmark for the relative coordinates . - using a sequence segment to create new segments based on relative offsets Description-md5: 1ce05f595fa0ba15a3a25414321787aa Homepage: https://metacpan.org/release/Bio-DB-GFF Section: perl Priority: optional Filename: pool/main/libb/libbio-db-gff-perl/libbio-db-gff-perl_1.7.3-2_all.deb Size: 273260 MD5sum: 23b0de00e7beb9c79359204d35cdcdb3 SHA256: cbae82d49613ea3fb39296660fffb6c2f46be764268b4ff168aadc6683f9db1d 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'show', '--no-all-versions', 'libbio-db-gff-perl'] 0m7.8s INFO: apt-cache knows about the following packages: libbio-db-gff-perl 0m7.8s INFO: Running scripts pre_install 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_database-server'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_database-server'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_exceptions'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_exceptions'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_extras'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_extras'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy'] 0m7.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy', 'libbio-db-gff-perl'] 0m7.9s DUMP: libbio-db-gff-perl: Installed: (none) Candidate: 1.7.3-2 Version table: 1.7.3-2 500 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy', 'libbio-db-gff-perl'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', '-y', 'install', 'libbio-db-gff-perl'] 0m16.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: apache2-bin ca-certificates libapache-dbi-perl libapache2-mod-perl2 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libbio-db-biofetch-perl libbio-perl-perl libbrotli1 libcgi-pm-perl libcurl4 libdata-stag-perl libdbi-perl libdevel-symdump-perl libencode-locale-perl libexpat1 libfile-listing-perl libgdbm-compat4 libgdbm6 libgssapi-krb5-2 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu63 libio-html-perl libio-socket-ssl-perl libio-string-perl libjansson4 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libnghttp2-14 libperl5.30 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.1 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml2 netbase openssl perl perl-modules-5.30 perl-openssl-defaults Suggested packages: apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser bioperl libxml-sax-expatxs-perl libclone-perl libmldbm-perl libnet-daemon-perl libsql-statement-perl gdbm-l10n krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl sensible-utils libauthen-ntlm-perl perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libb-debug-perl liblocale-codes-perl Recommended packages: libbsd-resource-perl libapache2-reload-perl bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libcgi-fast-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libhtml-format-perl krb5-locales publicsuffix libsasl2-modules libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: apache2-bin ca-certificates libapache-dbi-perl libapache2-mod-perl2 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libbio-db-biofetch-perl libbio-db-gff-perl libbio-perl-perl libbrotli1 libcgi-pm-perl libcurl4 libdata-stag-perl libdbi-perl libdevel-symdump-perl libencode-locale-perl libexpat1 libfile-listing-perl libgdbm-compat4 libgdbm6 libgssapi-krb5-2 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu63 libio-html-perl libio-socket-ssl-perl libio-string-perl libjansson4 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libnghttp2-14 libperl5.30 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.1 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml2 netbase openssl perl perl-modules-5.30 perl-openssl-defaults 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 30.1 MB of archives. After this operation, 121 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 perl-modules-5.30 all 5.30.0-9 [2803 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.18.1-5 [64.5 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.18.1-5 [44.2 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 libperl5.30 amd64 5.30.0-9 [4008 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 perl amd64 5.30.0-9 [290 kB] Get:6 http://mirror-ubc.debian.org/debian bullseye/main amd64 netbase all 6.0 [19.9 kB] Get:7 http://mirror-ubc.debian.org/debian bullseye/main amd64 libapr1 amd64 1.6.5-1+b1 [102 kB] Get:8 http://mirror-ubc.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:9 http://mirror-ubc.debian.org/debian bullseye/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:10 http://mirror-ubc.debian.org/debian bullseye/main amd64 libaprutil1 amd64 1.6.1-4+b1 [92.1 kB] Get:11 http://mirror-ubc.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.30.1+fossil191229-1 [655 kB] Get:12 http://mirror-ubc.debian.org/debian bullseye/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.1-4+b1 [19.0 kB] Get:13 http://mirror-ubc.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB] Get:14 http://mirror-ubc.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB] Get:15 http://mirror-ubc.debian.org/debian bullseye/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:16 http://mirror-ubc.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1+b2 [225 kB] Get:17 http://mirror-ubc.debian.org/debian bullseye/main amd64 libaprutil1-ldap amd64 1.6.1-4+b1 [17.1 kB] Get:18 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.7-6 [266 kB] Get:19 http://mirror-ubc.debian.org/debian bullseye/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:20 http://mirror-ubc.debian.org/debian bullseye/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:21 http://mirror-ubc.debian.org/debian bullseye/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:22 http://mirror-ubc.debian.org/debian bullseye/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:23 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:24 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.40.0-1 [85.0 kB] Get:25 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:26 http://mirror-ubc.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b1 [60.8 kB] Get:27 http://mirror-ubc.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:28 http://mirror-ubc.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.67.0-2 [321 kB] Get:29 http://mirror-ubc.debian.org/debian bullseye/main amd64 libjansson4 amd64 2.12-1 [38.0 kB] Get:30 http://mirror-ubc.debian.org/debian bullseye/main amd64 liblua5.2-0 amd64 5.2.4-1.1+b3 [108 kB] Get:31 http://mirror-ubc.debian.org/debian bullseye/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:32 http://mirror-ubc.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:33 http://mirror-ubc.debian.org/debian bullseye/main amd64 apache2-bin amd64 2.4.41-1 [1332 kB] Get:34 http://mirror-ubc.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1d-2 [840 kB] Get:35 http://mirror-ubc.debian.org/debian bullseye/main amd64 ca-certificates all 20190110 [157 kB] Get:36 http://mirror-ubc.debian.org/debian bullseye/main amd64 libdevel-symdump-perl all 2.18-3 [17.3 kB] Get:37 http://mirror-ubc.debian.org/debian bullseye/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:38 http://mirror-ubc.debian.org/debian bullseye/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:39 http://mirror-ubc.debian.org/debian bullseye/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:40 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:41 http://mirror-ubc.debian.org/debian bullseye/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:42 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:43 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhtml-parser-perl amd64 3.72-3+b4 [105 kB] Get:44 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:45 http://mirror-ubc.debian.org/debian bullseye/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:46 http://mirror-ubc.debian.org/debian bullseye/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:47 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get:48 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhttp-cookies-perl all 6.08-1 [19.3 kB] Get:49 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:50 http://mirror-ubc.debian.org/debian bullseye/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:51 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnet-ssleay-perl amd64 1.88-2 [321 kB] Get:52 http://mirror-ubc.debian.org/debian bullseye/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:53 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnet-http-perl all 6.19-1 [24.8 kB] Get:54 http://mirror-ubc.debian.org/debian bullseye/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get:55 http://mirror-ubc.debian.org/debian bullseye/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:56 http://mirror-ubc.debian.org/debian bullseye/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:57 http://mirror-ubc.debian.org/debian bullseye/main amd64 libwww-perl all 6.43-1 [191 kB] Get:58 http://mirror-ubc.debian.org/debian bullseye/main amd64 libapache2-mod-perl2 amd64 2.0.11-1 [888 kB] Get:59 http://mirror-ubc.debian.org/debian bullseye/main amd64 libdbi-perl amd64 1.642-1+b2 [775 kB] Get:60 http://mirror-ubc.debian.org/debian bullseye/main amd64 libapache-dbi-perl all 1.12-2 [50.7 kB] Get:61 http://mirror-ubc.debian.org/debian bullseye/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:62 http://mirror-ubc.debian.org/debian bullseye/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:63 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbio-perl-perl all 1.7.7-1 [2603 kB] Get:64 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbio-db-biofetch-perl all 1.7.3-2 [17.1 kB] Get:65 http://mirror-ubc.debian.org/debian bullseye/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:66 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbio-db-gff-perl all 1.7.3-2 [273 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.1 MB in 1s (58.2 MB/s) Selecting previously unselected package perl-modules-5.30. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6535 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.30_5.30.0-9_all.deb ... Unpacking perl-modules-5.30 (5.30.0-9) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.18.1-5_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-5) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../02-libgdbm-compat4_1.18.1-5_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.18.1-5) ... Selecting previously unselected package libperl5.30:amd64. Preparing to unpack .../03-libperl5.30_5.30.0-9_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.0-9) ... Selecting previously unselected package perl. Preparing to unpack .../04-perl_5.30.0-9_amd64.deb ... Unpacking perl (5.30.0-9) ... Selecting previously unselected package netbase. Preparing to unpack .../05-netbase_6.0_all.deb ... Unpacking netbase (6.0) ... Selecting previously unselected package libapr1:amd64. Preparing to unpack .../06-libapr1_1.6.5-1+b1_amd64.deb ... Unpacking libapr1:amd64 (1.6.5-1+b1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../07-libexpat1_2.2.9-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.9-1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../08-libssl1.1_1.1.1d-2_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-2) ... Selecting previously unselected package libaprutil1:amd64. Preparing to unpack .../09-libaprutil1_1.6.1-4+b1_amd64.deb ... Unpacking libaprutil1:amd64 (1.6.1-4+b1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../10-libsqlite3-0_3.30.1+fossil191229-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.30.1+fossil191229-1) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:amd64. Preparing to unpack .../11-libaprutil1-dbd-sqlite3_1.6.1-4+b1_amd64.deb ... Unpacking libaprutil1-dbd-sqlite3:amd64 (1.6.1-4+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../12-libsasl2-modules-db_2.1.27+dfsg-2_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../13-libsasl2-2_2.1.27+dfsg-2_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2) ... Selecting previously unselected package libldap-common. Preparing to unpack .../14-libldap-common_2.4.48+dfsg-1_all.deb ... Unpacking libldap-common (2.4.48+dfsg-1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../15-libldap-2.4-2_2.4.48+dfsg-1+b2_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.48+dfsg-1+b2) ... Selecting previously unselected package libaprutil1-ldap:amd64. Preparing to unpack .../16-libaprutil1-ldap_1.6.1-4+b1_amd64.deb ... Unpacking libaprutil1-ldap:amd64 (1.6.1-4+b1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../17-libbrotli1_1.0.7-6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.7-6) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../18-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../19-libkrb5support0_1.17-6_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-6) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../20-libk5crypto3_1.17-6_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../21-libkrb5-3_1.17-6_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-6) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../22-libgssapi-krb5-2_1.17-6_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-6) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../23-libnghttp2-14_1.40.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.40.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../24-libpsl5_0.20.2-2_amd64.deb ... Unpacking libpsl5:amd64 (0.20.2-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../25-librtmp1_2.4+20151223.gitfa8646d.1-2+b1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../26-libssh2-1_1.8.0-2.1_amd64.deb ... Unpacking libssh2-1:amd64 (1.8.0-2.1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../27-libcurl4_7.67.0-2_amd64.deb ... Unpacking libcurl4:amd64 (7.67.0-2) ... Selecting previously unselected package libjansson4:amd64. Preparing to unpack .../28-libjansson4_2.12-1_amd64.deb ... Unpacking libjansson4:amd64 (2.12-1) ... Selecting previously unselected package liblua5.2-0:amd64. Preparing to unpack .../29-liblua5.2-0_5.2.4-1.1+b3_amd64.deb ... Unpacking liblua5.2-0:amd64 (5.2.4-1.1+b3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../30-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../31-libxml2_2.9.4+dfsg1-8_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-8) ... Selecting previously unselected package apache2-bin. Preparing to unpack .../32-apache2-bin_2.4.41-1_amd64.deb ... Unpacking apache2-bin (2.4.41-1) ... Selecting previously unselected package openssl. Preparing to unpack .../33-openssl_1.1.1d-2_amd64.deb ... Unpacking openssl (1.1.1d-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../34-ca-certificates_20190110_all.deb ... Unpacking ca-certificates (20190110) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../35-libdevel-symdump-perl_2.18-3_all.deb ... Unpacking libdevel-symdump-perl (2.18-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../36-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../37-libencode-locale-perl_1.05-1_all.deb ... Unpacking libencode-locale-perl (1.05-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../38-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../39-libhttp-date-perl_6.05-1_all.deb ... Unpacking libhttp-date-perl (6.05-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../40-libfile-listing-perl_6.04-1_all.deb ... Unpacking libfile-listing-perl (6.04-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../41-libhtml-tagset-perl_3.20-4_all.deb ... Unpacking libhtml-tagset-perl (3.20-4) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../42-libhtml-parser-perl_3.72-3+b4_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b4) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../43-libhtml-tree-perl_5.07-2_all.deb ... Unpacking libhtml-tree-perl (5.07-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../44-libio-html-perl_1.001-1_all.deb ... Unpacking libio-html-perl (1.001-1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../45-liblwp-mediatypes-perl_6.04-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../46-libhttp-message-perl_6.18-1_all.deb ... Unpacking libhttp-message-perl (6.18-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../47-libhttp-cookies-perl_6.08-1_all.deb ... Unpacking libhttp-cookies-perl (6.08-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../48-libhttp-negotiate-perl_6.01-1_all.deb ... Unpacking libhttp-negotiate-perl (6.01-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../49-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../50-libnet-ssleay-perl_1.88-2_amd64.deb ... Unpacking libnet-ssleay-perl (1.88-2) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../51-libio-socket-ssl-perl_2.066-1_all.deb ... Unpacking libio-socket-ssl-perl (2.066-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../52-libnet-http-perl_6.19-1_all.deb ... Unpacking libnet-http-perl (6.19-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../53-liblwp-protocol-https-perl_6.07-2_all.deb ... Unpacking liblwp-protocol-https-perl (6.07-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../54-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../55-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../56-libwww-perl_6.43-1_all.deb ... Unpacking libwww-perl (6.43-1) ... Selecting previously unselected package libapache2-mod-perl2. Preparing to unpack .../57-libapache2-mod-perl2_2.0.11-1_amd64.deb ... Unpacking libapache2-mod-perl2 (2.0.11-1) ... Selecting previously unselected package libdbi-perl:amd64. Preparing to unpack .../58-libdbi-perl_1.642-1+b2_amd64.deb ... Unpacking libdbi-perl:amd64 (1.642-1+b2) ... Selecting previously unselected package libapache-dbi-perl. Preparing to unpack .../59-libapache-dbi-perl_1.12-2_all.deb ... Unpacking libapache-dbi-perl (1.12-2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../60-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../61-libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../62-libbio-perl-perl_1.7.7-1_all.deb ... Unpacking libbio-perl-perl (1.7.7-1) ... Selecting previously unselected package libbio-db-biofetch-perl. Preparing to unpack .../63-libbio-db-biofetch-perl_1.7.3-2_all.deb ... Unpacking libbio-db-biofetch-perl (1.7.3-2) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../64-libcgi-pm-perl_4.44-1_all.deb ... Unpacking libcgi-pm-perl (4.44-1) ... Selecting previously unselected package libbio-db-gff-perl. Preparing to unpack .../65-libbio-db-gff-perl_1.7.3-2_all.deb ... Unpacking libbio-db-gff-perl (1.7.3-2) ... Setting up libexpat1:amd64 (2.2.9-1) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up perl-modules-5.30 (5.30.0-9) ... Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up libbrotli1:amd64 (1.0.7-6) ... Setting up libsqlite3-0:amd64 (3.30.1+fossil191229-1) ... Setting up libnghttp2-14:amd64 (1.40.0-1) ... Setting up libapr1:amd64 (1.6.5-1+b1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libjansson4:amd64 (2.12-1) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up liblua5.2-0:amd64 (5.2.4-1.1+b3) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up netbase (6.0) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up openssl (1.1.1d-2) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8) ... Setting up libgdbm6:amd64 (1.18.1-5) ... Setting up libaprutil1:amd64 (1.6.1-4+b1) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1+b2) ... Setting up libaprutil1-ldap:amd64 (1.6.1-4+b1) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.1-4+b1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libgdbm-compat4:amd64 (1.18.1-5) ... Setting up libperl5.30:amd64 (5.30.0-9) ... Setting up libcurl4:amd64 (7.67.0-2) ... Setting up perl (5.30.0-9) ... Setting up libio-html-perl (1.001-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libdevel-symdump-perl (2.18-3) ... Setting up liburi-perl (1.76-1) ... Setting up libdbi-perl:amd64 (1.642-1+b2) ... Setting up libnet-ssleay-perl (1.88-2) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libnet-http-perl (6.19-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up apache2-bin (2.4.41-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libhtml-parser-perl (3.72-3+b4) ... Setting up libbio-perl-perl (1.7.7-1) ... Setting up libio-socket-ssl-perl (2.066-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libhttp-cookies-perl (6.08-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libcgi-pm-perl (4.44-1) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libwww-perl (6.43-1) ... Setting up libapache2-mod-perl2 (2.0.11-1) ... Setting up libbio-db-biofetch-perl (1.7.3-2) ... Setting up libapache-dbi-perl (1.12-2) ... Setting up libbio-db-gff-perl (1.7.3-2) ... Processing triggers for libc-bin (2.29-7) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', '-y', 'install', 'libbio-db-gff-perl'] 0m16.9s INFO: Running scripts post_install 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_install_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_install_exceptions'] 0m16.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m17.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m17.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpuqdncxf4 to sid 0m17.5s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m17.5s INFO: Running scripts pre_distupgrade 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', 'update'] 0m21.0s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [142 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8240 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6185 kB] Fetched 14.6 MB in 3s (5524 kB/s) Reading package lists... 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', 'update'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', '-yf', 'dist-upgrade'] 0m22.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apache2-bin gcc-9-base libbio-db-biofetch-perl libbio-db-gff-perl libc-bin libc6 libgcc1 libstdc++6 libtimedate-perl mawk 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6089 kB of archives. After this operation, 63.5 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 gcc-9-base amd64 9.2.1-23 [195 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 libgcc1 amd64 1:9.2.1-23 [40.5 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 libstdc++6 amd64 9.2.1-23 [502 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 libc6 amd64 2.29-9 [2809 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libc-bin amd64 2.29-9 [794 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 mawk amd64 1.3.3-19 [84.8 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 apache2-bin amd64 2.4.41-2 [1336 kB] Get:8 http://mirror-ubc.debian.org/debian sid/main amd64 libbio-db-biofetch-perl all 1.7.3-3 [17.2 kB] Get:9 http://mirror-ubc.debian.org/debian sid/main amd64 libbio-db-gff-perl all 1.7.4-1 [273 kB] Get:10 http://mirror-ubc.debian.org/debian sid/main amd64 libtimedate-perl all 2.3000-3 [38.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6089 kB in 0s (54.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11540 files and directories currently installed.) Preparing to unpack .../gcc-9-base_9.2.1-23_amd64.deb ... Unpacking gcc-9-base:amd64 (9.2.1-23) over (9.2.1-22) ... Setting up gcc-9-base:amd64 (9.2.1-23) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11540 files and directories currently installed.) Preparing to unpack .../libstdc++6_9.2.1-23_amd64.deb ... Unpacking libstdc++6:amd64 (9.2.1-23) over (9.2.1-22) ... Setting up libstdc++6:amd64 (9.2.1-23) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11540 files and directories currently installed.) Preparing to unpack .../libc6_2.29-9_amd64.deb ... Unpacking libc6:amd64 (2.29-9) over (2.29-7) ... Setting up libc6:amd64 (2.29-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11540 files and directories currently installed.) Preparing to unpack .../libc-bin_2.29-9_amd64.deb ... Unpacking libc-bin (2.29-9) over (2.29-7) ... Setting up libc-bin (2.29-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11540 files and directories currently installed.) Preparing to unpack .../mawk_1.3.3-19_amd64.deb ... Unpacking mawk (1.3.3-19) over (1.3.3-17+b3) ... Preparing to unpack .../apache2-bin_2.4.41-2_amd64.deb ... Unpacking apache2-bin (2.4.41-2) over (2.4.41-1) ... Preparing to unpack .../libbio-db-biofetch-perl_1.7.3-3_all.deb ... Unpacking libbio-db-biofetch-perl (1.7.3-3) over (1.7.3-2) ... Preparing to unpack .../libbio-db-gff-perl_1.7.4-1_all.deb ... Unpacking libbio-db-gff-perl (1.7.4-1) over (1.7.3-2) ... Preparing to unpack .../libtimedate-perl_2.3000-3_all.deb ... Unpacking libtimedate-perl (2.3000-3) over (2.3000-2) ... Setting up apache2-bin (2.4.41-2) ... Setting up libbio-db-biofetch-perl (1.7.3-3) ... Setting up libtimedate-perl (2.3000-3) ... Setting up mawk (1.3.3-19) ... Setting up libbio-db-gff-perl (1.7.4-1) ... 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', '-yf', 'dist-upgrade'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.2s DUMP: d2d1481f99ae7326cc0cc3e9d0d0e0ed - 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'show', '--no-all-versions', 'libbio-db-gff-perl'] 0m23.4s DUMP: Package: libbio-db-gff-perl Version: 1.7.4-1 Installed-Size: 855 Maintainer: Michael R. Crusoe Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl Breaks: libbio-perl-perl (<< 1.7.3) Description-en: Storage and retrieval of sequence annotation data Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. . The following operations are supported by this module: . - retrieving a segment of sequence based on the ID of a landmark . - retrieving the DNA from that segment . - finding all annotations that overlap with the segment . - finding all annotations that are completely contained within the segment . - retrieving all annotations of a particular type, either within a segment, or globally . - conversion from absolute to relative coordinates and back again, using any arbitrary landmark for the relative coordinates . - using a sequence segment to create new segments based on relative offsets Description-md5: 1ce05f595fa0ba15a3a25414321787aa Homepage: https://metacpan.org/release/Bio-DB-GFF Section: perl Priority: optional Filename: pool/main/libb/libbio-db-gff-perl/libbio-db-gff-perl_1.7.4-1_all.deb Size: 273140 MD5sum: ea80685596373001e5b95b025f315cf4 SHA256: efc74853637a91502af68e6c5df4ba32c98e60c7938e388387276a84057c5d26 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'show', '--no-all-versions', 'libbio-db-gff-perl'] 0m23.4s INFO: apt-cache knows about the following packages: libbio-db-gff-perl 0m23.4s INFO: Running scripts pre_install 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_database-server'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_database-server'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_exceptions'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_exceptions'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_extras'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_extras'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy'] 0m23.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy', 'libbio-db-gff-perl'] 0m23.5s DUMP: libbio-db-gff-perl: Installed: 1.7.4-1 Candidate: 1.7.4-1 Version table: *** 1.7.4-1 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy', 'libbio-db-gff-perl'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', '-y', 'install', 'libbio-db-gff-perl'] 0m23.8s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-db-gff-perl is already the newest version (1.7.4-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', '-y', 'install', 'libbio-db-gff-perl'] 0m23.8s INFO: Running scripts post_install 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_install_exceptions'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_install_exceptions'] 0m23.9s INFO: Running scripts post_distupgrade 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m24.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m24.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m24.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m24.9s INFO: Running scripts pre_install 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_database-server'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_database-server'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_exceptions'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_exceptions'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_extras'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_extras'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy'] 0m24.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy', 'libbio-db-gff-perl'] 0m24.9s DUMP: libbio-db-gff-perl: Installed: 1.7.4-1 Candidate: 1.7.4-1 Version table: *** 1.7.4-1 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-cache', 'policy', 'libbio-db-gff-perl'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', '-y', 'install', 'libbio-db-gff-perl=1.7.4-1'] 0m25.3s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-db-gff-perl is already the newest version (1.7.4-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', '-y', 'install', 'libbio-db-gff-perl=1.7.4-1'] 0m25.3s INFO: Running scripts post_install 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_install_exceptions'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_install_exceptions'] 0m25.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m25.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m26.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', '-ac', '--ignore-obsolete'] 0m27.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', '-ac', '--ignore-obsolete'] 0m27.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.4s DUMP: 0.15.2 0m27.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.4s INFO: Running adequate version 0.15.2 now. 0m27.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'libbio-db-gff-perl'] 0m27.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'libbio-db-gff-perl'] 0m27.5s INFO: Running scripts pre_remove 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_exceptions'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/pre_remove_exceptions'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apache2-bin apache2-bin 2.4.41-2 install ok installed apt apt 1.8.4 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-5 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed ca-certificates ca-certificates 20190110 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.5-2 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-23 install ok installed gpgv gpgv 2.2.19-1 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+b1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-5 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-2 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.11-1 install ok installed libapr1:amd64 libapr1 1.6.5-1+b1 install ok installed libaprutil1:amd64 libaprutil1 1.6.1-4+b1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.6.1-4+b1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.6.1-4+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2+b1 install ok installed libbio-db-biofetch-perl libbio-db-biofetch-perl 1.7.3-3 install ok installed libbio-db-gff-perl libbio-db-gff-perl 1.7.4-1 install ok installed libbio-perl-perl libbio-perl-perl 1.7.7-1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbrotli1:amd64 libbrotli1 1.0.7-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.29-9 install ok installed libc6:amd64 libc6 2.29-9 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.45.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.10-10 install ok installed libcurl4:amd64 libcurl4 7.67.0-2 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdbi-perl:amd64 libdbi-perl 1.642-1+b2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.250 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-3 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libexpat1:amd64 libexpat1 2.2.9-1 install ok installed libext2fs2:amd64 libext2fs2 1.45.5-2 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libgcc1:amd64 libgcc1 1:9.2.1-23 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-5 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-5 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.11.1-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-6 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3+b4 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-4 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.08-1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-1 install ok installed libhttp-message-perl libhttp-message-perl 6.18-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libicu63:amd64 libicu63 63.2-2 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-2 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.066-1 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libjansson4:amd64 libjansson4 2.12-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-6 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-6 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-6 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.48+dfsg-1+b2 install ok installed libldap-common libldap-common 2.4.48+dfsg-1 install ok installed liblua5.2-0:amd64 liblua5.2-0 5.2.4-1.1+b3 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.07-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20191019-1 install ok installed libnet-http-perl libnet-http-perl 6.19-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.88-2 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.40.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.18.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libperl5.30:amd64 libperl5.30 5.30.0-9 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2 install ok installed libseccomp2:amd64 libseccomp2 2.4.2-2 install ok installed libselinux1:amd64 libselinux1 3.0-1 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.30.1+fossil191229-1 install ok installed libss2:amd64 libss2 1.45.5-2 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1d-2 install ok installed libstdc++6:amd64 libstdc++6 9.2.1-23 install ok installed libsystemd0:amd64 libsystemd0 244-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.15.0-2 install ok installed libtimedate-perl libtimedate-perl 2.3000-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20191019-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libudev1:amd64 libudev1 244-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed liburi-perl liburi-perl 1.76-1 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libwww-perl libwww-perl 6.43-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-8 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-1 install ok installed login login 1:4.8-1 install ok installed logsave logsave 1.45.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.3-19 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20191019-1 install ok installed ncurses-bin ncurses-bin 6.1+20191019-1 install ok installed netbase netbase 6.0 install ok installed openssl openssl 1.1.1d-2 install ok installed passwd passwd 1:4.8-1 install ok installed perl perl 5.30.0-9 install ok installed perl-base perl-base 5.30.0-9 install ok installed perl-modules-5.30 perl-modules-5.30 5.30.0-9 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', 'remove', 'apache2-bin', 'ca-certificates', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-db-biofetch-perl', 'libbio-perl-perl', 'libbrotli1:amd64', 'libcgi-pm-perl', 'libcurl4:amd64', 'libdata-stag-perl', 'libdbi-perl:amd64', 'libdevel-symdump-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgssapi-krb5-2:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu63:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjansson4:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libperl5.30:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml2:amd64', 'netbase', 'openssl', 'perl', 'perl-modules-5.30', 'perl-openssl-defaults:amd64', 'libbio-db-gff-perl'] 0m29.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: apache2-bin ca-certificates libapache-dbi-perl libapache2-mod-perl2 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libbio-db-biofetch-perl libbio-db-gff-perl libbio-perl-perl libbrotli1 libcgi-pm-perl libcurl4 libdata-stag-perl libdbi-perl libdevel-symdump-perl libencode-locale-perl libexpat1 libfile-listing-perl libgdbm-compat4 libgdbm6 libgssapi-krb5-2 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu63 libio-html-perl libio-socket-ssl-perl libio-string-perl libjansson4 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libnghttp2-14 libperl5.30 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.1 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml2 netbase openssl perl perl-modules-5.30 perl-openssl-defaults 0 upgraded, 0 newly installed, 66 to remove and 0 not upgraded. After this operation, 121 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11539 files and directories currently installed.) Removing libbio-db-gff-perl (1.7.4-1) ... Removing libapache-dbi-perl (1.12-2) ... Removing libapache2-mod-perl2 (2.0.11-1) ... Removing apache2-bin (2.4.41-2) ... Removing libbio-db-biofetch-perl (1.7.3-3) ... Removing libaprutil1-ldap:amd64 (1.6.1-4+b1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.6.1-4+b1) ... Removing libaprutil1:amd64 (1.6.1-4+b1) ... Removing libapr1:amd64 (1.6.5-1+b1) ... Removing libbio-perl-perl (1.7.7-1) ... Removing libcurl4:amd64 (7.67.0-2) ... Removing libbrotli1:amd64 (1.0.7-6) ... Removing libcgi-pm-perl (4.44-1) ... Removing libdata-stag-perl (0.14-2) ... Removing libdbi-perl:amd64 (1.642-1+b2) ... Removing libdevel-symdump-perl (2.18-3) ... Removing libexpat1:amd64 (2.2.9-1) ... Removing libgssapi-krb5-2:amd64 (1.17-6) ... Removing libxml2:amd64 (2.9.4+dfsg1-8) ... Removing libicu63:amd64 (63.2-2) ... Removing libio-string-perl (1.08-3) ... Removing libjansson4:amd64 (2.12-1) ... Removing libkrb5-3:amd64 (1.17-6) ... Removing libk5crypto3:amd64 (1.17-6) ... Removing libkrb5support0:amd64 (1.17-6) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing libldap-2.4-2:amd64 (2.4.48+dfsg-1+b2) ... Removing libldap-common (2.4.48+dfsg-1) ... Removing liblua5.2-0:amd64 (5.2.4-1.1+b3) ... Removing libnghttp2-14:amd64 (1.40.0-1) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Removing libsqlite3-0:amd64 (3.30.1+fossil191229-1) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing libwww-perl (6.43-1) ... Removing liblwp-protocol-https-perl (6.07-2) ... Removing ca-certificates (20190110) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.01-1) ... Removing libhttp-cookies-perl (6.08-1) ... Removing libhttp-message-perl (6.18-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libfile-listing-perl (6.04-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libnet-http-perl (6.19-1) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.72-3+b4) ... Removing liburi-perl (1.76-1) ... Removing libhttp-date-perl (6.05-1) ... Removing libtry-tiny-perl (0.30-1) ... Removing libtimedate-perl (2.3000-3) ... Removing libhtml-tagset-perl (3.20-4) ... Removing libio-html-perl (1.001-1) ... Removing libio-socket-ssl-perl (2.066-1) ... Removing liblwp-mediatypes-perl (6.04-1) ... Removing libnet-ssleay-perl (1.88-2) ... Removing perl-openssl-defaults:amd64 (3) ... Removing openssl (1.1.1d-2) ... Removing libssl1.1:amd64 (1.1.1d-2) ... Removing netbase (6.0) ... Removing perl (5.30.0-9) ... Removing libperl5.30:amd64 (5.30.0-9) ... Removing libgdbm-compat4:amd64 (1.18.1-5) ... Removing libgdbm6:amd64 (1.18.1-5) ... Removing perl-modules-5.30 (5.30.0-9) ... Processing triggers for libc-bin (2.29-9) ... 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', 'remove', 'apache2-bin', 'ca-certificates', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-db-biofetch-perl', 'libbio-perl-perl', 'libbrotli1:amd64', 'libcgi-pm-perl', 'libcurl4:amd64', 'libdata-stag-perl', 'libdbi-perl:amd64', 'libdevel-symdump-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgssapi-krb5-2:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu63:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjansson4:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libperl5.30:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml2:amd64', 'netbase', 'openssl', 'perl', 'perl-modules-5.30', 'perl-openssl-defaults:amd64', 'libbio-db-gff-perl'] 0m29.8s INFO: Running scripts post_remove 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_remove_exceptions'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_remove_exceptions'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg', '--purge', 'apache2-bin', 'ca-certificates', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-db-biofetch-perl', 'libbio-perl-perl', 'libbrotli1:amd64', 'libcgi-pm-perl', 'libcurl4:amd64', 'libdata-stag-perl', 'libdbi-perl:amd64', 'libdevel-symdump-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgssapi-krb5-2:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu63:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjansson4:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libperl5.30:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml2:amd64', 'netbase', 'openssl', 'perl', 'perl-modules-5.30', 'perl-openssl-defaults:amd64'] 0m30.0s DUMP: dpkg: warning: ignoring request to remove apache2-bin which isn't installed (Reading database ... 6549 files and directories currently installed.) Purging configuration files for ca-certificates (20190110) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed Purging configuration files for libapache2-mod-perl2 (2.0.11-1) ... dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libbio-db-biofetch-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-6) ... dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.48+dfsg-1) ... dpkg: warning: ignoring request to remove liblua5.2-0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libperl5.30 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1d-2) ... dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed Purging configuration files for netbase (6.0) ... Purging configuration files for openssl (1.1.1d-2) ... Purging configuration files for perl (5.30.0-9) ... dpkg: warning: ignoring request to remove perl-modules-5.30 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg', '--purge', 'apache2-bin', 'ca-certificates', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-db-biofetch-perl', 'libbio-perl-perl', 'libbrotli1:amd64', 'libcgi-pm-perl', 'libcurl4:amd64', 'libdata-stag-perl', 'libdbi-perl:amd64', 'libdevel-symdump-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgssapi-krb5-2:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu63:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjansson4:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libperl5.30:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml2:amd64', 'netbase', 'openssl', 'perl', 'perl-modules-5.30', 'perl-openssl-defaults:amd64'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg', '--purge', 'libbio-db-gff-perl'] 0m30.1s DUMP: dpkg: warning: ignoring request to remove libbio-db-gff-perl which isn't installed 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg', '--purge', 'libbio-db-gff-perl'] 0m30.1s INFO: Running scripts post_purge 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_purge_exceptions'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_purge_exceptions'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg', '--purge', '--pending'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg', '--purge', '--pending'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg', '--remove', '--pending'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg', '--remove', '--pending'] 0m30.1s INFO: Running scripts post_test 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_test_exceptions'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'tmp/scripts/post_test_exceptions'] 0m30.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m30.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg-divert', '--list'] 0m30.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'dpkg-divert', '--list'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', 'clean'] 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4', 'apt-get', 'clean'] 0m30.5s DEBUG: Recording chroot state 0m31.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/shm'] 0m31.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/shm'] 0m31.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/console'] 0m31.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/console'] 0m31.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/ptmx'] 0m31.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/ptmx'] 0m31.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/pts'] 0m31.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/dev/pts'] 0m31.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/proc'] 0m31.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4/proc'] 0m31.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m31.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpuqdncxf4'] 0m31.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpuqdncxf4 0m31.5s INFO: PASS: Upgrading between Debian distributions. 0m31.5s INFO: PASS: All tests. 0m31.5s INFO: piuparts run ends. ret=0 End: 2020-01-14 13:21:22 GMT