Start: 2020-01-04 03:40:23 GMT [testing] Package: libbio-db-swissprot-perl Version: 1.7.4-1 Installed-Size: 35 Maintainer: Debian Med team Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libbio-perl-perl, libhttp-message-perl, libwww-perl Breaks: libbio-perl-perl (<< 1.7.3) Description: Database object interface to SwissProt retrieval Homepage: https://metacpan.org/release/Bio-DB-SwissProt Description-md5: 561a00ce6dab79c7d90c3fda943983f2 Section: perl Priority: optional Filename: pool/main/libb/libbio-db-swissprot-perl/libbio-db-swissprot-perl_1.7.4-1_all.deb Size: 12040 MD5sum: 6746880810357bf8976c035b2ac348dc SHA256: 74a3b0b09dc5a83a2e1c3e5c11e8b0a18811c22862f92ecf5644fde1d27822fb [sid] Package: libbio-db-swissprot-perl Version: 1.7.4-1 Installed-Size: 35 Maintainer: Debian Med team Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libbio-perl-perl, libhttp-message-perl, libwww-perl Breaks: libbio-perl-perl (<< 1.7.3) Description: Database object interface to SwissProt retrieval Homepage: https://metacpan.org/release/Bio-DB-SwissProt Description-md5: 561a00ce6dab79c7d90c3fda943983f2 Section: perl Priority: optional Filename: pool/main/libb/libbio-db-swissprot-perl/libbio-db-swissprot-perl_1.7.4-1_all.deb Size: 12040 MD5sum: 6746880810357bf8976c035b2ac348dc SHA256: 74a3b0b09dc5a83a2e1c3e5c11e8b0a18811c22862f92ecf5644fde1d27822fb Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libbio-db-swissprot-perl=1.7.4-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.0~201912291631~1.0.1-69-gfda3b882 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libbio-db-swissprot-perl=1.7.4-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpd5p9a3d1 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpd5p9a3d1 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/proc'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/proc'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/pts'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/pts'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ bullseye main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpd5p9a3d1/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', 'update'] 0m5.4s DUMP: Get:1 http://mirror-ubc.debian.org/debian bullseye InRelease [113 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages [7609 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main Translation-en [5778 kB] Fetched 13.5 MB in 3s (4895 kB/s) Reading package lists... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', 'update'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s DUMP: 1855d40608c10f54c9b5b90dd6d18b9e - 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s INFO: Running scripts post_setup 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_dummy_users'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_dummy_users'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_forbid_home'] 0m7.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_forbid_home'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.4 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-5 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.4-1 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-21 install ok installed gpgv gpgv 2.2.17-3 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+b1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-5 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2+b1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.29-3 install ok installed libc6:amd64 libc6 2.29-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.4-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.250 install ok installed libext2fs2:amd64 libext2fs2 1.45.4-1 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:9.2.1-21 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.11.1-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20191019-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.18.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.2-2 install ok installed libselinux1:amd64 libselinux1 3.0-1 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.4-1 install ok installed libstdc++6:amd64 libstdc++6 9.2.1-21 install ok installed libsystemd0:amd64 libsystemd0 244-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.15.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20191019-1 install ok installed libudev1:amd64 libudev1 244-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-1 install ok installed login login 1:4.7-2 install ok installed logsave logsave 1.45.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20191019-1 install ok installed ncurses-bin ncurses-bin 6.1+20191019-1 install ok installed passwd passwd 1:4.7-2 install ok installed perl-base perl-base 5.30.0-9 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m7.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m7.8s INFO: Running scripts is_testable 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/is_testable_uninstallable'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/is_testable_uninstallable'] 0m7.8s INFO: Running scripts pre_test 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_test_exceptions'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_test_exceptions'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_test_root_password'] 0m7.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_test_root_password'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'show', '--no-all-versions', 'libbio-db-swissprot-perl'] 0m8.0s DUMP: Package: libbio-db-swissprot-perl Version: 1.7.4-1 Installed-Size: 35 Maintainer: Debian Med team Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libbio-perl-perl, libhttp-message-perl, libwww-perl Breaks: libbio-perl-perl (<< 1.7.3) Description-en: Database object interface to SwissProt retrieval SwissProt is a curated database of proteins managed by the Swiss Bioinformatics Institute. Additional tools for parsing and manipulating swissprot files can be found at ftp://ftp.ebi.ac.uk/pub/software/swissprot/Swissknife/. . Allows the dynamic retrieval of Sequence objects (Bio::Seq) from the SwissProt database via an Expasy retrieval. . In order to make changes transparent host type (currently only expasy) and location (default to Switzerland) is separated out. This allows the user to pick the closest Expasy mirror for running their queries. Description-md5: 561a00ce6dab79c7d90c3fda943983f2 Homepage: https://metacpan.org/release/Bio-DB-SwissProt Section: perl Priority: optional Filename: pool/main/libb/libbio-db-swissprot-perl/libbio-db-swissprot-perl_1.7.4-1_all.deb Size: 12040 MD5sum: 6746880810357bf8976c035b2ac348dc SHA256: 74a3b0b09dc5a83a2e1c3e5c11e8b0a18811c22862f92ecf5644fde1d27822fb 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'show', '--no-all-versions', 'libbio-db-swissprot-perl'] 0m8.0s INFO: apt-cache knows about the following packages: libbio-db-swissprot-perl 0m8.0s INFO: Running scripts pre_install 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_database-server'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_database-server'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_extras'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_extras'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy'] 0m8.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy', 'libbio-db-swissprot-perl'] 0m8.1s DUMP: libbio-db-swissprot-perl: Installed: (none) Candidate: 1.7.4-1 Version table: 1.7.4-1 500 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy', 'libbio-db-swissprot-perl'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', '-y', 'install', 'libbio-db-swissprot-perl'] 0m13.9s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates libbio-perl-perl libdata-stag-perl libencode-locale-perl libfile-listing-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.30 libssl1.1 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl netbase openssl perl perl-modules-5.30 perl-openssl-defaults Suggested packages: bioperl libxml-sax-expatxs-perl gdbm-l10n libdata-dump-perl libcrypt-ssleay-perl sensible-utils libauthen-ntlm-perl perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libb-debug-perl liblocale-codes-perl Recommended packages: bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libhtml-format-perl libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates libbio-db-swissprot-perl libbio-perl-perl libdata-stag-perl libencode-locale-perl libfile-listing-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.30 libssl1.1 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl netbase openssl perl perl-modules-5.30 perl-openssl-defaults 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 14.3 MB of archives. After this operation, 66.2 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 perl-modules-5.30 all 5.30.0-9 [2803 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.18.1-5 [64.5 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.18.1-5 [44.2 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 libperl5.30 amd64 5.30.0-9 [4008 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 perl amd64 5.30.0-9 [290 kB] Get:6 http://mirror-ubc.debian.org/debian bullseye/main amd64 netbase all 5.8 [19.1 kB] Get:7 http://mirror-ubc.debian.org/debian bullseye/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:8 http://mirror-ubc.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1d-2 [840 kB] Get:9 http://mirror-ubc.debian.org/debian bullseye/main amd64 ca-certificates all 20190110 [157 kB] Get:10 http://mirror-ubc.debian.org/debian bullseye/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:11 http://mirror-ubc.debian.org/debian bullseye/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:12 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbio-perl-perl all 1.7.7-1 [2603 kB] Get:13 http://mirror-ubc.debian.org/debian bullseye/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:14 http://mirror-ubc.debian.org/debian bullseye/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:15 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:16 http://mirror-ubc.debian.org/debian bullseye/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:17 http://mirror-ubc.debian.org/debian bullseye/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:18 http://mirror-ubc.debian.org/debian bullseye/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:19 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get:20 http://mirror-ubc.debian.org/debian bullseye/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:21 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:22 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhtml-parser-perl amd64 3.72-3+b4 [105 kB] Get:23 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:24 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhttp-cookies-perl all 6.08-1 [19.3 kB] Get:25 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:26 http://mirror-ubc.debian.org/debian bullseye/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:27 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnet-ssleay-perl amd64 1.88-2 [321 kB] Get:28 http://mirror-ubc.debian.org/debian bullseye/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:29 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnet-http-perl all 6.19-1 [24.8 kB] Get:30 http://mirror-ubc.debian.org/debian bullseye/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get:31 http://mirror-ubc.debian.org/debian bullseye/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:32 http://mirror-ubc.debian.org/debian bullseye/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:33 http://mirror-ubc.debian.org/debian bullseye/main amd64 libwww-perl all 6.43-1 [191 kB] Get:34 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbio-db-swissprot-perl all 1.7.4-1 [12.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.3 MB in 0s (45.2 MB/s) Selecting previously unselected package perl-modules-5.30. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6531 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.30_5.30.0-9_all.deb ... Unpacking perl-modules-5.30 (5.30.0-9) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.18.1-5_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-5) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../02-libgdbm-compat4_1.18.1-5_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.18.1-5) ... Selecting previously unselected package libperl5.30:amd64. Preparing to unpack .../03-libperl5.30_5.30.0-9_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.0-9) ... Selecting previously unselected package perl. Preparing to unpack .../04-perl_5.30.0-9_amd64.deb ... Unpacking perl (5.30.0-9) ... Selecting previously unselected package netbase. Preparing to unpack .../05-netbase_5.8_all.deb ... Unpacking netbase (5.8) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../06-libssl1.1_1.1.1d-2_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-2) ... Selecting previously unselected package openssl. Preparing to unpack .../07-openssl_1.1.1d-2_amd64.deb ... Unpacking openssl (1.1.1d-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../08-ca-certificates_20190110_all.deb ... Unpacking ca-certificates (20190110) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../09-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../10-libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../11-libbio-perl-perl_1.7.7-1_all.deb ... Unpacking libbio-perl-perl (1.7.7-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../12-libencode-locale-perl_1.05-1_all.deb ... Unpacking libencode-locale-perl (1.05-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../13-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../14-libhttp-date-perl_6.05-1_all.deb ... Unpacking libhttp-date-perl (6.05-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../15-libio-html-perl_1.001-1_all.deb ... Unpacking libio-html-perl (1.001-1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../16-liblwp-mediatypes-perl_6.04-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../17-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../18-libhttp-message-perl_6.18-1_all.deb ... Unpacking libhttp-message-perl (6.18-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../19-libfile-listing-perl_6.04-1_all.deb ... Unpacking libfile-listing-perl (6.04-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../20-libhtml-tagset-perl_3.20-4_all.deb ... Unpacking libhtml-tagset-perl (3.20-4) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../21-libhtml-parser-perl_3.72-3+b4_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b4) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../22-libhtml-tree-perl_5.07-2_all.deb ... Unpacking libhtml-tree-perl (5.07-2) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../23-libhttp-cookies-perl_6.08-1_all.deb ... Unpacking libhttp-cookies-perl (6.08-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../24-libhttp-negotiate-perl_6.01-1_all.deb ... Unpacking libhttp-negotiate-perl (6.01-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../25-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../26-libnet-ssleay-perl_1.88-2_amd64.deb ... Unpacking libnet-ssleay-perl (1.88-2) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../27-libio-socket-ssl-perl_2.066-1_all.deb ... Unpacking libio-socket-ssl-perl (2.066-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../28-libnet-http-perl_6.19-1_all.deb ... Unpacking libnet-http-perl (6.19-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../29-liblwp-protocol-https-perl_6.07-2_all.deb ... Unpacking liblwp-protocol-https-perl (6.07-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../30-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../31-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../32-libwww-perl_6.43-1_all.deb ... Unpacking libwww-perl (6.43-1) ... Selecting previously unselected package libbio-db-swissprot-perl. Preparing to unpack .../33-libbio-db-swissprot-perl_1.7.4-1_all.deb ... Unpacking libbio-db-swissprot-perl (1.7.4-1) ... Setting up perl-modules-5.30 (5.30.0-9) ... Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up netbase (5.8) ... Setting up openssl (1.1.1d-2) ... Setting up libgdbm6:amd64 (1.18.1-5) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libgdbm-compat4:amd64 (1.18.1-5) ... Setting up libperl5.30:amd64 (5.30.0-9) ... Setting up perl (5.30.0-9) ... Setting up libio-html-perl (1.001-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.88-2) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libnet-http-perl (6.19-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libhtml-parser-perl (3.72-3+b4) ... Setting up libbio-perl-perl (1.7.7-1) ... Setting up libio-socket-ssl-perl (2.066-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libhttp-cookies-perl (6.08-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libwww-perl (6.43-1) ... Setting up libbio-db-swissprot-perl (1.7.4-1) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Processing triggers for libc-bin (2.29-3) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', '-y', 'install', 'libbio-db-swissprot-perl'] 0m13.9s INFO: Running scripts post_install 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_install_exceptions'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_install_exceptions'] 0m14.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m14.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m14.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpd5p9a3d1 to sid 0m14.4s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m14.4s INFO: Running scripts pre_distupgrade 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', 'update'] 0m18.3s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [142 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8257 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6198 kB] Fetched 14.6 MB in 3s (4635 kB/s) Reading package lists... 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', 'update'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', '-yf', 'dist-upgrade'] 0m20.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libcrypt1 The following packages will be upgraded: libc-bin libc6 login mawk netbase passwd 6 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 5429 kB of archives. After this operation, 323 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.10-10 [85.2 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 libc6 amd64 2.29-7 [2809 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 login amd64 1:4.8-1 [649 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 libc-bin amd64 2.29-7 [794 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 mawk amd64 1.3.3-19 [84.8 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 passwd amd64 1:4.8-1 [987 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 netbase all 6.0 [19.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5429 kB in 0s (84.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10506 files and directories currently installed.) Preparing to unpack .../libc6_2.29-7_amd64.deb ... Unpacking libc6:amd64 (2.29-7) over (2.29-3) ... Selecting previously unselected package libcrypt1:amd64. Preparing to unpack .../libcrypt1_1%3a4.4.10-10_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.10-10) ... Setting up libcrypt1:amd64 (1:4.4.10-10) ... Setting up libc6:amd64 (2.29-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10510 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8-1_amd64.deb ... Unpacking login (1:4.8-1) over (1:4.7-2) ... Setting up login (1:4.8-1) ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10510 files and directories currently installed.) Preparing to unpack .../libc-bin_2.29-7_amd64.deb ... Unpacking libc-bin (2.29-7) over (2.29-3) ... Setting up libc-bin (2.29-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10510 files and directories currently installed.) Preparing to unpack .../mawk_1.3.3-19_amd64.deb ... Unpacking mawk (1.3.3-19) over (1.3.3-17+b3) ... Preparing to unpack .../passwd_1%3a4.8-1_amd64.deb ... Unpacking passwd (1:4.8-1) over (1:4.7-2) ... Setting up passwd (1:4.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10509 files and directories currently installed.) Preparing to unpack .../archives/netbase_6.0_all.deb ... Unpacking netbase (6.0) over (5.8) ... Setting up netbase (6.0) ... Installing new version of config file /etc/services ... Setting up mawk (1.3.3-19) ... 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', '-yf', 'dist-upgrade'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m20.5s DUMP: b8998b0c389338e113f374833c624377 - 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'show', '--no-all-versions', 'libbio-db-swissprot-perl'] 0m20.7s DUMP: Package: libbio-db-swissprot-perl Version: 1.7.4-1 Installed-Size: 35 Maintainer: Debian Med team Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libbio-perl-perl, libhttp-message-perl, libwww-perl Breaks: libbio-perl-perl (<< 1.7.3) Description-en: Database object interface to SwissProt retrieval SwissProt is a curated database of proteins managed by the Swiss Bioinformatics Institute. Additional tools for parsing and manipulating swissprot files can be found at ftp://ftp.ebi.ac.uk/pub/software/swissprot/Swissknife/. . Allows the dynamic retrieval of Sequence objects (Bio::Seq) from the SwissProt database via an Expasy retrieval. . In order to make changes transparent host type (currently only expasy) and location (default to Switzerland) is separated out. This allows the user to pick the closest Expasy mirror for running their queries. Description-md5: 561a00ce6dab79c7d90c3fda943983f2 Homepage: https://metacpan.org/release/Bio-DB-SwissProt Section: perl Priority: optional Filename: pool/main/libb/libbio-db-swissprot-perl/libbio-db-swissprot-perl_1.7.4-1_all.deb Size: 12040 MD5sum: 6746880810357bf8976c035b2ac348dc SHA256: 74a3b0b09dc5a83a2e1c3e5c11e8b0a18811c22862f92ecf5644fde1d27822fb 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'show', '--no-all-versions', 'libbio-db-swissprot-perl'] 0m20.7s INFO: apt-cache knows about the following packages: libbio-db-swissprot-perl 0m20.7s INFO: Running scripts pre_install 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_database-server'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_database-server'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_exceptions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_exceptions'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_extras'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_extras'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy'] 0m20.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy', 'libbio-db-swissprot-perl'] 0m20.9s DUMP: libbio-db-swissprot-perl: Installed: 1.7.4-1 Candidate: 1.7.4-1 Version table: *** 1.7.4-1 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy', 'libbio-db-swissprot-perl'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', '-y', 'install', 'libbio-db-swissprot-perl'] 0m21.3s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-db-swissprot-perl is already the newest version (1.7.4-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', '-y', 'install', 'libbio-db-swissprot-perl'] 0m21.3s INFO: Running scripts post_install 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_install_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_install_exceptions'] 0m21.4s INFO: Running scripts post_distupgrade 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_distupgrade_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_distupgrade_exceptions'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_distupgrade_zz_backports'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_distupgrade_zz_backports'] 0m21.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m22.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m22.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m22.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m22.5s INFO: Running scripts pre_install 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_database-server'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_database-server'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_exceptions'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_exceptions'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_extras'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_extras'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy'] 0m22.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy', 'libbio-db-swissprot-perl'] 0m22.7s DUMP: libbio-db-swissprot-perl: Installed: 1.7.4-1 Candidate: 1.7.4-1 Version table: *** 1.7.4-1 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-cache', 'policy', 'libbio-db-swissprot-perl'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', '-y', 'install', 'libbio-db-swissprot-perl=1.7.4-1'] 0m23.1s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-db-swissprot-perl is already the newest version (1.7.4-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', '-y', 'install', 'libbio-db-swissprot-perl=1.7.4-1'] 0m23.1s INFO: Running scripts post_install 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_install_exceptions'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_install_exceptions'] 0m23.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m23.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m24.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', '-ac', '--ignore-obsolete'] 0m25.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', '-ac', '--ignore-obsolete'] 0m25.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.3s DUMP: 0.15.2 0m25.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.3s INFO: Running adequate version 0.15.2 now. 0m25.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'libbio-db-swissprot-perl'] 0m25.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'libbio-db-swissprot-perl'] 0m25.4s INFO: Running scripts pre_remove 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_exceptions'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/pre_remove_exceptions'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.4 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-5 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed ca-certificates ca-certificates 20190110 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.4-1 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-21 install ok installed gpgv gpgv 2.2.17-3 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+b1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-5 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2+b1 install ok installed libbio-db-swissprot-perl libbio-db-swissprot-perl 1.7.4-1 install ok installed libbio-perl-perl libbio-perl-perl 1.7.7-1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.29-7 install ok installed libc6:amd64 libc6 2.29-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.10-10 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.250 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libext2fs2:amd64 libext2fs2 1.45.4-1 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libgcc1:amd64 libgcc1 1:9.2.1-21 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-5 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-5 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.11.1-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3+b4 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-4 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.08-1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-1 install ok installed libhttp-message-perl libhttp-message-perl 6.18-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-2 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.066-1 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.07-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20191019-1 install ok installed libnet-http-perl libnet-http-perl 6.19-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.88-2 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.18.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libperl5.30:amd64 libperl5.30 5.30.0-9 install ok installed libseccomp2:amd64 libseccomp2 2.4.2-2 install ok installed libselinux1:amd64 libselinux1 3.0-1 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1d-2 install ok installed libstdc++6:amd64 libstdc++6 9.2.1-21 install ok installed libsystemd0:amd64 libsystemd0 244-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.15.0-2 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20191019-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libudev1:amd64 libudev1 244-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed liburi-perl liburi-perl 1.76-1 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libwww-perl libwww-perl 6.43-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-1 install ok installed login login 1:4.8-1 install ok installed logsave logsave 1.45.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.3-19 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20191019-1 install ok installed ncurses-bin ncurses-bin 6.1+20191019-1 install ok installed netbase netbase 6.0 install ok installed openssl openssl 1.1.1d-2 install ok installed passwd passwd 1:4.8-1 install ok installed perl perl 5.30.0-9 install ok installed perl-base perl-base 5.30.0-9 install ok installed perl-modules-5.30 perl-modules-5.30 5.30.0-9 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', 'remove', 'ca-certificates', 'libbio-perl-perl', 'libdata-stag-perl', 'libencode-locale-perl', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libperl5.30:amd64', 'libssl1.1:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.30', 'perl-openssl-defaults:amd64', 'libbio-db-swissprot-perl'] 0m27.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates libbio-db-swissprot-perl libbio-perl-perl libdata-stag-perl libencode-locale-perl libfile-listing-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.30 libssl1.1 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl netbase openssl perl perl-modules-5.30 perl-openssl-defaults 0 upgraded, 0 newly installed, 34 to remove and 0 not upgraded. After this operation, 66.2 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10510 files and directories currently installed.) Removing libbio-db-swissprot-perl (1.7.4-1) ... Removing libbio-perl-perl (1.7.7-1) ... Removing libdata-stag-perl (0.14-2) ... Removing libio-string-perl (1.08-3) ... Removing libwww-perl (6.43-1) ... Removing liblwp-protocol-https-perl (6.07-2) ... Removing ca-certificates (20190110) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.01-1) ... Removing libhttp-cookies-perl (6.08-1) ... Removing libhttp-message-perl (6.18-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libfile-listing-perl (6.04-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libnet-http-perl (6.19-1) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.72-3+b4) ... Removing liburi-perl (1.76-1) ... Removing libhttp-date-perl (6.05-1) ... Removing libtry-tiny-perl (0.30-1) ... Removing libhtml-tagset-perl (3.20-4) ... Removing libio-html-perl (1.001-1) ... Removing libio-socket-ssl-perl (2.066-1) ... Removing liblwp-mediatypes-perl (6.04-1) ... Removing libnet-ssleay-perl (1.88-2) ... Removing perl-openssl-defaults:amd64 (3) ... Removing openssl (1.1.1d-2) ... Removing libssl1.1:amd64 (1.1.1d-2) ... Removing libtimedate-perl (2.3000-2) ... Removing netbase (6.0) ... Removing perl (5.30.0-9) ... Removing libperl5.30:amd64 (5.30.0-9) ... Removing libgdbm-compat4:amd64 (1.18.1-5) ... Removing libgdbm6:amd64 (1.18.1-5) ... Removing perl-modules-5.30 (5.30.0-9) ... Processing triggers for libc-bin (2.29-7) ... 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', 'remove', 'ca-certificates', 'libbio-perl-perl', 'libdata-stag-perl', 'libencode-locale-perl', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libperl5.30:amd64', 'libssl1.1:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.30', 'perl-openssl-defaults:amd64', 'libbio-db-swissprot-perl'] 0m27.3s INFO: Running scripts post_remove 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_remove_exceptions'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_remove_exceptions'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg', '--purge', 'ca-certificates', 'libbio-perl-perl', 'libdata-stag-perl', 'libencode-locale-perl', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libperl5.30:amd64', 'libssl1.1:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.30', 'perl-openssl-defaults:amd64'] 0m27.5s DUMP: (Reading database ... 6544 files and directories currently installed.) Purging configuration files for ca-certificates (20190110) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libperl5.30 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1d-2) ... dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed Purging configuration files for netbase (6.0) ... Purging configuration files for openssl (1.1.1d-2) ... Purging configuration files for perl (5.30.0-9) ... dpkg: warning: ignoring request to remove perl-modules-5.30 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg', '--purge', 'ca-certificates', 'libbio-perl-perl', 'libdata-stag-perl', 'libencode-locale-perl', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libperl5.30:amd64', 'libssl1.1:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.30', 'perl-openssl-defaults:amd64'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg', '--purge', 'libbio-db-swissprot-perl'] 0m27.5s DUMP: dpkg: warning: ignoring request to remove libbio-db-swissprot-perl which isn't installed 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg', '--purge', 'libbio-db-swissprot-perl'] 0m27.5s INFO: Running scripts post_purge 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_purge_exceptions'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_purge_exceptions'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg', '--purge', '--pending'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg', '--purge', '--pending'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg', '--remove', '--pending'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg', '--remove', '--pending'] 0m27.5s INFO: Running scripts post_test 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_test_exceptions'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'tmp/scripts/post_test_exceptions'] 0m27.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m27.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg-divert', '--list'] 0m27.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'dpkg-divert', '--list'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', 'clean'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1', 'apt-get', 'clean'] 0m27.9s DEBUG: Recording chroot state 0m28.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/shm'] 0m28.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/shm'] 0m28.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/console'] 0m28.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/console'] 0m28.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/ptmx'] 0m28.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/ptmx'] 0m28.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/pts'] 0m28.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/dev/pts'] 0m28.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/proc'] 0m28.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1/proc'] 0m28.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m28.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpd5p9a3d1'] 0m28.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpd5p9a3d1 0m28.8s INFO: PASS: Upgrading between Debian distributions. 0m28.8s INFO: PASS: All tests. 0m28.8s INFO: piuparts run ends. ret=0 End: 2020-01-04 03:40:52 GMT