Start: 2019-12-07 05:16:31 UTC [testing] Package: libbio-searchio-hmmer-perl Version: 1.7.3-2 Installed-Size: 334 Maintainer: Michael R. Crusoe Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl, libbio-perl-perl, libio-string-perl Breaks: libbio-perl-perl (<< 1.7.3) Description: perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam) Homepage: https://metacpan.org/release/Bio-SearchIO-hmmer Description-md5: e20b4be1ac58d51536a90dde88d97db0 Section: perl Priority: optional Filename: pool/main/libb/libbio-searchio-hmmer-perl/libbio-searchio-hmmer-perl_1.7.3-2_all.deb Size: 95944 MD5sum: b134e6896fab241bc44c10822815a988 SHA256: 33746d83b1aa06f0a07b69f437d95fd6b88ad2c4c1175d6c3877458904d48cfa [sid] Package: libbio-searchio-hmmer-perl Version: 1.7.3-2 Installed-Size: 334 Maintainer: Michael R. Crusoe Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl, libbio-perl-perl, libio-string-perl Breaks: libbio-perl-perl (<< 1.7.3) Description: perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam) Homepage: https://metacpan.org/release/Bio-SearchIO-hmmer Description-md5: e20b4be1ac58d51536a90dde88d97db0 Section: perl Priority: optional Filename: pool/main/libb/libbio-searchio-hmmer-perl/libbio-searchio-hmmer-perl_1.7.3-2_all.deb Size: 95944 MD5sum: b134e6896fab241bc44c10822815a988 SHA256: 33746d83b1aa06f0a07b69f437d95fd6b88ad2c4c1175d6c3877458904d48cfa Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libbio-searchio-hmmer-perl=1.7.3-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.0.2~201909101611~1.0.1-11-g98f8c745 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libbio-searchio-hmmer-perl=1.7.3-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpBU5Nh4 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpBU5Nh4 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/proc'] 0m2.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/proc'] 0m2.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/pts'] 0m2.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/pts'] 0m2.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/ptmx'] 0m2.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/ptmx'] 0m2.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/console'] 0m2.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/console'] 0m2.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/shm'] 0m2.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/shm'] 0m2.8s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ bullseye main 0m2.8s DEBUG: Created policy-rc.d and chmodded it. 0m2.8s DEBUG: Created resolv.conf. 0m2.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpBU5Nh4/tmp/scripts/ 0m2.8s INFO: Running scripts post_chroot_unpack 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', 'update'] 0m8.3s DUMP: Get:1 http://mirror-ubc.debian.org/debian bullseye InRelease [113 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages [7685 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main Translation-en [5838 kB] Fetched 13.6 MB in 4s (3175 kB/s) Reading package lists... 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', 'update'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', '-yf', 'dist-upgrade'] 0m10.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-9-base libgcc1 libpcre2-8-0 libstdc++6 libsystemd0 libudev1 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1480 kB of archives. After this operation, 52.2 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 libsystemd0 amd64 244-3 [347 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 gcc-9-base amd64 9.2.1-21 [194 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 libstdc++6 amd64 9.2.1-21 [501 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgcc1 amd64 1:9.2.1-21 [40.5 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpcre2-8-0 amd64 10.34-3+b1 [235 kB] Get:6 http://mirror-ubc.debian.org/debian bullseye/main amd64 libudev1 amd64 244-3 [162 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1480 kB in 0s (24.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6533 files and directories currently installed.) Preparing to unpack .../libsystemd0_244-3_amd64.deb ... Unpacking libsystemd0:amd64 (244-3) over (243-8) ... Setting up libsystemd0:amd64 (244-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6533 files and directories currently installed.) Preparing to unpack .../gcc-9-base_9.2.1-21_amd64.deb ... Unpacking gcc-9-base:amd64 (9.2.1-21) over (9.2.1-19) ... Setting up gcc-9-base:amd64 (9.2.1-21) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6533 files and directories currently installed.) Preparing to unpack .../libstdc++6_9.2.1-21_amd64.deb ... Unpacking libstdc++6:amd64 (9.2.1-21) over (9.2.1-19) ... Setting up libstdc++6:amd64 (9.2.1-21) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6533 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a9.2.1-21_amd64.deb ... Unpacking libgcc1:amd64 (1:9.2.1-21) over (1:9.2.1-19) ... Setting up libgcc1:amd64 (1:9.2.1-21) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6533 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.34-3+b1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.34-3+b1) over (10.32-5+b1) ... Setting up libpcre2-8-0:amd64 (10.34-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6533 files and directories currently installed.) Preparing to unpack .../libudev1_244-3_amd64.deb ... Unpacking libudev1:amd64 (244-3) over (243-8) ... Setting up libudev1:amd64 (244-3) ... Processing triggers for libc-bin (2.29-3) ... 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', '-yf', 'dist-upgrade'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.6s DUMP: bff4f221bc0753adae90fd186f2094aa - 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.6s INFO: Running scripts post_setup 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_dummy_users'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_dummy_users'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_forbid_home'] 0m12.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_forbid_home'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_force-unsafe-io'] 0m12.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_force-unsafe-io'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_minimize'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_minimize'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_squeeze-backports'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_squeeze-backports'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_zz_backports'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_setup_zz_backports'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m12.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.4 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-5 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.4-1 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-21 install ok installed gpgv gpgv 2.2.17-3 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+b1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-5 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2+b1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.29-3 install ok installed libc6:amd64 libc6 2.29-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.4-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.250 install ok installed libext2fs2:amd64 libext2fs2 1.45.4-1 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:9.2.1-21 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.10-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20191019-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.18.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-3+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.2-2 install ok installed libselinux1:amd64 libselinux1 2.9-3+b1 install ok installed libsemanage-common libsemanage-common 2.9-3 install ok installed libsemanage1:amd64 libsemanage1 2.9-3+b1 install ok installed libsepol1:amd64 libsepol1 2.9-2+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.4-1 install ok installed libstdc++6:amd64 libstdc++6 9.2.1-21 install ok installed libsystemd0:amd64 libsystemd0 244-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.14-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20191019-1 install ok installed libudev1:amd64 libudev1 244-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-1 install ok installed login login 1:4.7-2 install ok installed logsave logsave 1.45.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20191019-1 install ok installed ncurses-bin ncurses-bin 6.1+20191019-1 install ok installed passwd passwd 1:4.7-2 install ok installed perl-base perl-base 5.30.0-9 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m12.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m12.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m13.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m13.4s INFO: Running scripts is_testable 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/is_testable_uninstallable'] 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/is_testable_uninstallable'] 0m13.4s INFO: Running scripts pre_test 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_test_exceptions'] 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_test_exceptions'] 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_test_root_password'] 0m13.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_test_root_password'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'show', '--no-all-versions', 'libbio-searchio-hmmer-perl'] 0m13.9s DUMP: Package: libbio-searchio-hmmer-perl Version: 1.7.3-2 Installed-Size: 334 Maintainer: Michael R. Crusoe Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl, libbio-perl-perl, libio-string-perl Breaks: libbio-perl-perl (<< 1.7.3) Description-en: perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam) This object implements a parser for hmmpfam hsp output, a program in the HMMER package. . It is part of the libbio-perl collection. Description-md5: e20b4be1ac58d51536a90dde88d97db0 Homepage: https://metacpan.org/release/Bio-SearchIO-hmmer Section: perl Priority: optional Filename: pool/main/libb/libbio-searchio-hmmer-perl/libbio-searchio-hmmer-perl_1.7.3-2_all.deb Size: 95944 MD5sum: b134e6896fab241bc44c10822815a988 SHA256: 33746d83b1aa06f0a07b69f437d95fd6b88ad2c4c1175d6c3877458904d48cfa 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'show', '--no-all-versions', 'libbio-searchio-hmmer-perl'] 0m13.9s INFO: apt-cache knows about the following packages: libbio-searchio-hmmer-perl 0m13.9s INFO: Running scripts pre_install 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_database-server'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_database-server'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_exceptions'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_exceptions'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_extras'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_extras'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy'] 0m14.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy', 'libbio-searchio-hmmer-perl'] 0m14.1s DUMP: libbio-searchio-hmmer-perl: Installed: (none) Candidate: 1.7.3-2 Version table: 1.7.3-2 500 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy', 'libbio-searchio-hmmer-perl'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', '-y', 'install', 'libbio-searchio-hmmer-perl'] 0m18.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbio-perl-perl libdata-stag-perl libgdbm-compat4 libgdbm6 libio-string-perl libperl5.30 perl perl-modules-5.30 Suggested packages: bioperl libxml-sax-expatxs-perl gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libb-debug-perl liblocale-codes-perl Recommended packages: bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl netbase The following NEW packages will be installed: libbio-perl-perl libbio-searchio-hmmer-perl libdata-stag-perl libgdbm-compat4 libgdbm6 libio-string-perl libperl5.30 perl perl-modules-5.30 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 10.4 MB of archives. After this operation, 56.2 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 perl-modules-5.30 all 5.30.0-9 [2803 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.18.1-5 [64.5 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.18.1-5 [44.2 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 libperl5.30 amd64 5.30.0-9 [4008 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 perl amd64 5.30.0-9 [290 kB] Get:6 http://mirror-ubc.debian.org/debian bullseye/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:7 http://mirror-ubc.debian.org/debian bullseye/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:8 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbio-perl-perl all 1.7.6-3 [2604 kB] Get:9 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbio-searchio-hmmer-perl all 1.7.3-2 [95.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.4 MB in 0s (41.5 MB/s) Selecting previously unselected package perl-modules-5.30. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6535 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.30_5.30.0-9_all.deb ... Unpacking perl-modules-5.30 (5.30.0-9) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.18.1-5_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-5) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.18.1-5_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.18.1-5) ... Selecting previously unselected package libperl5.30:amd64. Preparing to unpack .../3-libperl5.30_5.30.0-9_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.0-9) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.30.0-9_amd64.deb ... Unpacking perl (5.30.0-9) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../5-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../6-libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../7-libbio-perl-perl_1.7.6-3_all.deb ... Unpacking libbio-perl-perl (1.7.6-3) ... Selecting previously unselected package libbio-searchio-hmmer-perl. Preparing to unpack .../8-libbio-searchio-hmmer-perl_1.7.3-2_all.deb ... Unpacking libbio-searchio-hmmer-perl (1.7.3-2) ... Setting up perl-modules-5.30 (5.30.0-9) ... Setting up libgdbm6:amd64 (1.18.1-5) ... Setting up libgdbm-compat4:amd64 (1.18.1-5) ... Setting up libperl5.30:amd64 (5.30.0-9) ... Setting up perl (5.30.0-9) ... Setting up libio-string-perl (1.08-3) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libbio-perl-perl (1.7.6-3) ... Setting up libbio-searchio-hmmer-perl (1.7.3-2) ... Processing triggers for libc-bin (2.29-3) ... 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', '-y', 'install', 'libbio-searchio-hmmer-perl'] 0m18.2s INFO: Running scripts post_install 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_install_exceptions'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_install_exceptions'] 0m18.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m18.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m18.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpBU5Nh4 to sid 0m18.8s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m18.8s INFO: Running scripts pre_distupgrade 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', 'update'] 0m24.6s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [142 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8219 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6174 kB] Fetched 14.5 MB in 4s (3457 kB/s) Reading package lists... 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', 'update'] 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', '-yf', 'dist-upgrade'] 0m27.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libcrypt1 The following packages will be upgraded: libc-bin libc6 libpcre2-8-0 libtasn1-6 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 3974 kB of archives. After this operation, 191 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.10-5 [84.8 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 libc6 amd64 2.29-5 [2807 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 libc-bin amd64 2.29-5 [793 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.34-5 [235 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.15.0-2 [53.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3974 kB in 0s (31.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9701 files and directories currently installed.) Preparing to unpack .../libc6_2.29-5_amd64.deb ... Unpacking libc6:amd64 (2.29-5) over (2.29-3) ... Selecting previously unselected package libcrypt1:amd64. Preparing to unpack .../libcrypt1_1%3a4.4.10-5_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.10-5) ... Setting up libcrypt1:amd64 (1:4.4.10-5) ... Setting up libc6:amd64 (2.29-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9705 files and directories currently installed.) Preparing to unpack .../libc-bin_2.29-5_amd64.deb ... Unpacking libc-bin (2.29-5) over (2.29-3) ... Setting up libc-bin (2.29-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9705 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.34-5_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.34-5) over (10.34-3+b1) ... Setting up libpcre2-8-0:amd64 (10.34-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9704 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.15.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.15.0-2) over (4.14-3) ... Setting up libtasn1-6:amd64 (4.15.0-2) ... Processing triggers for libc-bin (2.29-5) ... 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', '-yf', 'dist-upgrade'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.7s DUMP: ed5b3c45b56efda9e80f3fab85216cad - 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'show', '--no-all-versions', 'libbio-searchio-hmmer-perl'] 0m29.2s DUMP: Package: libbio-searchio-hmmer-perl Version: 1.7.3-2 Installed-Size: 334 Maintainer: Michael R. Crusoe Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl, libbio-perl-perl, libio-string-perl Breaks: libbio-perl-perl (<< 1.7.3) Description-en: perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam) This object implements a parser for hmmpfam hsp output, a program in the HMMER package. . It is part of the libbio-perl collection. Description-md5: e20b4be1ac58d51536a90dde88d97db0 Homepage: https://metacpan.org/release/Bio-SearchIO-hmmer Section: perl Priority: optional Filename: pool/main/libb/libbio-searchio-hmmer-perl/libbio-searchio-hmmer-perl_1.7.3-2_all.deb Size: 95944 MD5sum: b134e6896fab241bc44c10822815a988 SHA256: 33746d83b1aa06f0a07b69f437d95fd6b88ad2c4c1175d6c3877458904d48cfa 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'show', '--no-all-versions', 'libbio-searchio-hmmer-perl'] 0m29.2s INFO: apt-cache knows about the following packages: libbio-searchio-hmmer-perl 0m29.2s INFO: Running scripts pre_install 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_database-server'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_database-server'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_exceptions'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_exceptions'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_extras'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_extras'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy'] 0m29.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy', 'libbio-searchio-hmmer-perl'] 0m29.6s DUMP: libbio-searchio-hmmer-perl: Installed: 1.7.3-2 Candidate: 1.7.3-2 Version table: *** 1.7.3-2 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy', 'libbio-searchio-hmmer-perl'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', '-y', 'install', 'libbio-searchio-hmmer-perl'] 0m30.7s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-searchio-hmmer-perl is already the newest version (1.7.3-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', '-y', 'install', 'libbio-searchio-hmmer-perl'] 0m30.7s INFO: Running scripts post_install 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_install_exceptions'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_install_exceptions'] 0m30.7s INFO: Running scripts post_distupgrade 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m30.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_distupgrade_exceptions'] 0m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_distupgrade_exceptions'] 0m30.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m30.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m30.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_distupgrade_zz_backports'] 0m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_distupgrade_zz_backports'] 0m30.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m31.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m31.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m32.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m32.2s INFO: Running scripts pre_install 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_database-server'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_database-server'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_exceptions'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_exceptions'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_extras'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_extras'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy'] 0m32.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy'] 0m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy', 'libbio-searchio-hmmer-perl'] 0m32.5s DUMP: libbio-searchio-hmmer-perl: Installed: 1.7.3-2 Candidate: 1.7.3-2 Version table: *** 1.7.3-2 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-cache', 'policy', 'libbio-searchio-hmmer-perl'] 0m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', '-y', 'install', 'libbio-searchio-hmmer-perl=1.7.3-2'] 0m33.3s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-searchio-hmmer-perl is already the newest version (1.7.3-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', '-y', 'install', 'libbio-searchio-hmmer-perl=1.7.3-2'] 0m33.3s INFO: Running scripts post_install 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_install_exceptions'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_install_exceptions'] 0m33.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m34.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m35.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', '-ac', '--ignore-obsolete'] 0m36.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', '-ac', '--ignore-obsolete'] 0m36.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m36.6s DUMP: 0.15.2 0m36.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m36.6s INFO: Running adequate version 0.15.2 now. 0m36.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'libbio-searchio-hmmer-perl'] 0m36.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'libbio-searchio-hmmer-perl'] 0m36.7s INFO: Running scripts pre_remove 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_exceptions'] 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/pre_remove_exceptions'] 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.4s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.4 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-5 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.4-1 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-21 install ok installed gpgv gpgv 2.2.17-3 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+b1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-5 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2+b1 install ok installed libbio-perl-perl libbio-perl-perl 1.7.6-3 install ok installed libbio-searchio-hmmer-perl libbio-searchio-hmmer-perl 1.7.3-2 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.29-5 install ok installed libc6:amd64 libc6 2.29-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.10-5 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.250 install ok installed libext2fs2:amd64 libext2fs2 1.45.4-1 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:9.2.1-21 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-5 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-5 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.10-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-2 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20191019-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.18.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libperl5.30:amd64 libperl5.30 5.30.0-9 install ok installed libseccomp2:amd64 libseccomp2 2.4.2-2 install ok installed libselinux1:amd64 libselinux1 2.9-3+b1 install ok installed libsemanage-common libsemanage-common 2.9-3 install ok installed libsemanage1:amd64 libsemanage1 2.9-3+b1 install ok installed libsepol1:amd64 libsepol1 2.9-2+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.4-1 install ok installed libstdc++6:amd64 libstdc++6 9.2.1-21 install ok installed libsystemd0:amd64 libsystemd0 244-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.15.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20191019-1 install ok installed libudev1:amd64 libudev1 244-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-1 install ok installed login login 1:4.7-2 install ok installed logsave logsave 1.45.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20191019-1 install ok installed ncurses-bin ncurses-bin 6.1+20191019-1 install ok installed passwd passwd 1:4.7-2 install ok installed perl perl 5.30.0-9 install ok installed perl-base perl-base 5.30.0-9 install ok installed perl-modules-5.30 perl-modules-5.30 5.30.0-9 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', 'remove', 'perl-modules-5.30', 'libgdbm6:amd64', 'libdata-stag-perl', 'libbio-perl-perl', 'perl', 'libperl5.30:amd64', 'libio-string-perl', 'libgdbm-compat4:amd64', 'libbio-searchio-hmmer-perl'] 0m39.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libbio-perl-perl libbio-searchio-hmmer-perl libdata-stag-perl libgdbm-compat4 libgdbm6 libio-string-perl libperl5.30 perl perl-modules-5.30 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. After this operation, 56.2 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9704 files and directories currently installed.) Removing libbio-searchio-hmmer-perl (1.7.3-2) ... Removing libbio-perl-perl (1.7.6-3) ... Removing libdata-stag-perl (0.14-2) ... Removing libio-string-perl (1.08-3) ... Removing perl (5.30.0-9) ... Removing libperl5.30:amd64 (5.30.0-9) ... Removing libgdbm-compat4:amd64 (1.18.1-5) ... Removing libgdbm6:amd64 (1.18.1-5) ... Removing perl-modules-5.30 (5.30.0-9) ... Processing triggers for libc-bin (2.29-5) ... 0m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', 'remove', 'perl-modules-5.30', 'libgdbm6:amd64', 'libdata-stag-perl', 'libbio-perl-perl', 'perl', 'libperl5.30:amd64', 'libio-string-perl', 'libgdbm-compat4:amd64', 'libbio-searchio-hmmer-perl'] 0m39.6s INFO: Running scripts post_remove 0m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_remove_exceptions'] 0m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_remove_exceptions'] 0m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg', '--purge', 'perl-modules-5.30', 'libgdbm6:amd64', 'libdata-stag-perl', 'libbio-perl-perl', 'perl', 'libperl5.30:amd64', 'libio-string-perl', 'libgdbm-compat4:amd64'] 0m39.7s DUMP: dpkg: warning: ignoring request to remove perl-modules-5.30 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed (Reading database ... 6541 files and directories currently installed.) Purging configuration files for perl (5.30.0-9) ... dpkg: warning: ignoring request to remove libperl5.30 which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed 0m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg', '--purge', 'perl-modules-5.30', 'libgdbm6:amd64', 'libdata-stag-perl', 'libbio-perl-perl', 'perl', 'libperl5.30:amd64', 'libio-string-perl', 'libgdbm-compat4:amd64'] 0m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg', '--purge', 'libbio-searchio-hmmer-perl'] 0m39.8s DUMP: dpkg: warning: ignoring request to remove libbio-searchio-hmmer-perl which isn't installed 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg', '--purge', 'libbio-searchio-hmmer-perl'] 0m39.8s INFO: Running scripts post_purge 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_purge_exceptions'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_purge_exceptions'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg', '--purge', '--pending'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg', '--purge', '--pending'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg', '--remove', '--pending'] 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg', '--remove', '--pending'] 0m39.9s INFO: Running scripts post_test 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_test_exceptions'] 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'tmp/scripts/post_test_exceptions'] 0m39.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m40.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg-divert', '--list'] 0m40.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'dpkg-divert', '--list'] 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', 'clean'] 0m41.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4', 'apt-get', 'clean'] 0m41.0s DEBUG: Recording chroot state 0m42.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/shm'] 0m42.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/shm'] 0m42.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/console'] 0m43.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/console'] 0m43.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/ptmx'] 0m43.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/ptmx'] 0m43.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/pts'] 0m43.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/dev/pts'] 0m43.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/proc'] 0m43.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4/proc'] 0m43.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m43.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpBU5Nh4'] 0m43.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpBU5Nh4 0m43.3s INFO: PASS: Upgrading between Debian distributions. 0m43.3s INFO: PASS: All tests. 0m43.3s INFO: piuparts run ends. ret=0 End: 2019-12-07 05:17:15 UTC