Start: 2021-12-02 15:18:29 GMT [testing] Package: libbio-variation-perl Version: 1.7.5-2 Installed-Size: 232 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libbio-perl-perl, libbio-db-ncbihelper-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl Breaks: libbio-perl-perl (<< 1.7.3) Description: BioPerl variation-related functionality Homepage: https://metacpan.org/release/Bio-Variation Description-md5: 63c4017b0ec43832aa03a6efe20ad2e3 Section: perl Priority: optional Filename: pool/main/libb/libbio-variation-perl/libbio-variation-perl_1.7.5-2_all.deb Size: 72456 MD5sum: 8c30f57b23c895c4e33c711dfbda1606 SHA256: f9dc122445ee2f1c58c3775b0a66b4615093da1348edc28afff6f1dd46e7f08a [sid] Package: libbio-variation-perl Version: 1.7.5-3 Installed-Size: 232 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libbio-perl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl Breaks: libbio-perl-perl (<< 1.7.3) Description: BioPerl variation-related functionality Homepage: https://metacpan.org/release/Bio-Variation Description-md5: 63c4017b0ec43832aa03a6efe20ad2e3 Section: perl Priority: optional Filename: pool/main/libb/libbio-variation-perl/libbio-variation-perl_1.7.5-3_all.deb Size: 72624 MD5sum: 3be6c3cec8af16aa804b299b531ed67f SHA256: 4e65a655d4e43a13a790542b7b1005b7a0342232b4b89244f94dbe82dd672e64 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libbio-variation-perl=1.7.5-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libbio-variation-perl=1.7.5-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-18-amd64 #1 SMP Debian 4.19.208-1 (2021-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpjp64p3_g 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpjp64p3_g 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/console'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/console'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/shm'] 0m2.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpjp64p3_g/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', 'update'] 0m4.9s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [129 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8256 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5681 kB] Fetched 14.1 MB in 2s (6596 kB/s) Reading package lists... 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', 'update'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', '-yf', 'dist-upgrade'] 0m5.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bash 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1411 kB of archives. After this operation, 15.4 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 bash amd64 5.1-5 [1411 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1411 kB in 0s (30.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6667 files and directories currently installed.) Preparing to unpack .../archives/bash_5.1-5_amd64.deb ... Unpacking bash (5.1-5) over (5.1-3.1) ... Setting up bash (5.1-5) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', '-yf', 'dist-upgrade'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.9s DUMP: 03e24c4a5f32295c5e2b822dfcce63e4 - 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.9s INFO: Running scripts post_setup 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_dummy_users'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_dummy_users'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_forbid_home'] 0m7.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_forbid_home'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.6s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.13 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-5 install ok installed bsdutils bsdutils 1:2.37.2-4 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-12 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-10 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.13 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.2-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.32-4 install ok installed libc6:amd64 libc6 2.32-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.26-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-10 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-3+b1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-4 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-5 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-10 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-10 install ok installed libpam-runtime libpam-runtime 1.4.0-10 install ok installed libpam0g:amd64 libpam0g 1.4.0-10 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-4 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-10 install ok installed libsystemd0:amd64 libsystemd0 249.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 249.7-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-4 install ok installed ncurses-base ncurses-base 6.3-1 install ok installed ncurses-bin ncurses-bin 6.3-1 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl-base perl-base 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.00-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m8.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m8.0s INFO: Running scripts is_testable 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s INFO: Running scripts pre_test 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_test_root_password'] 0m8.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_test_root_password'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'show', '--no-all-versions', 'libbio-variation-perl'] 0m8.2s DUMP: Package: libbio-variation-perl Version: 1.7.5-2 Installed-Size: 232 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libbio-perl-perl, libbio-db-ncbihelper-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl Breaks: libbio-perl-perl (<< 1.7.3) Description-en: BioPerl variation-related functionality The code in this distribution focuses on simple low-dependency variant-related functionality for BioPerl. . Bio::Variation name space contains modules to store sequence variation information as differences between the reference sequence and changes sequences. Also included are classes to write out and recrete objects from EMBL-like flat files and XML. Lastly, there are simple classes to calculate values for sequence change objects. Description-md5: 63c4017b0ec43832aa03a6efe20ad2e3 Homepage: https://metacpan.org/release/Bio-Variation Section: perl Priority: optional Filename: pool/main/libb/libbio-variation-perl/libbio-variation-perl_1.7.5-2_all.deb Size: 72456 MD5sum: 8c30f57b23c895c4e33c711dfbda1606 SHA256: f9dc122445ee2f1c58c3775b0a66b4615093da1348edc28afff6f1dd46e7f08a 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'show', '--no-all-versions', 'libbio-variation-perl'] 0m8.2s INFO: apt-cache knows about the following packages: libbio-variation-perl 0m8.2s INFO: Running scripts pre_install 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy'] 0m8.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy', 'libbio-variation-perl'] 0m8.3s DUMP: libbio-variation-perl: Installed: (none) Candidate: 1.7.5-2 Version table: 1.7.5-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy', 'libbio-variation-perl'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', '-y', 'install', 'libbio-variation-perl'] 0m14.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-db-ncbihelper-perl libbio-perl-perl libcache-cache-perl libcgi-pm-perl libdata-stag-perl libencode-locale-perl liberror-perl libexpat1 libfile-listing-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libipc-sharelite-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.32 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-twig-perl libxml-writer-perl netbase openssl perl perl-modules-5.32 perl-openssl-defaults Suggested packages: bioperl libxml-sax-expatxs-perl gdbm-l10n libdata-dump-perl libcrypt-ssleay-perl sensible-utils libsub-name-perl libbusiness-isbn-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl Recommended packages: bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-libxml-perl libcgi-fast-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libhtml-format-perl libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libtext-iconv-perl libtie-ixhash-perl libxml-xpathengine-perl | libxml-xpath-perl The following NEW packages will be installed: ca-certificates libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-db-ncbihelper-perl libbio-perl-perl libbio-variation-perl libcache-cache-perl libcgi-pm-perl libdata-stag-perl libencode-locale-perl liberror-perl libexpat1 libfile-listing-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libipc-sharelite-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.32 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-twig-perl libxml-writer-perl netbase openssl perl perl-modules-5.32 perl-openssl-defaults 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 14.0 MB of archives. After this operation, 66.5 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.22-1 [82.1 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.22-1 [56.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.32.1-6 [293 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 netbase all 6.3 [19.9 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 1.1.1l-1 [851 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20210119 [158 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 liberror-perl all 0.17029-1 [31.0 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libipc-sharelite-perl amd64 0.17-4+b5 [24.5 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libcache-cache-perl all 1.08-2 [76.6 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 liburi-perl all 5.10-1 [91.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libhtml-parser-perl amd64 3.76-1 [105 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libcgi-pm-perl all 4.53-1 [224 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libio-html-perl all 1.004-2 [16.1 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libhttp-message-perl all 6.35-1 [80.5 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libfile-listing-perl all 6.14-1 [12.4 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 perl-openssl-defaults amd64 5 [7360 B] Get:30 http://deb.debian.org/debian bookworm/main amd64 libnet-ssleay-perl amd64 1.90-1 [327 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libio-socket-ssl-perl all 2.072-1 [221 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libnet-http-perl all 6.21-1 [25.3 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libtry-tiny-perl all 0.31-1 [24.2 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libwww-perl all 6.58-1 [193 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.4.1-3 [104 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libxml-parser-perl amd64 2.46-3 [206 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libxml-twig-perl all 1:3.52-1 [181 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libbio-db-ncbihelper-perl all 1.7.6-4 [58.1 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libxml-writer-perl all 0.900-1 [29.9 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libbio-variation-perl all 1.7.5-2 [72.5 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libbio-cluster-perl all 1.7.3-5 [53.2 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libbio-asn1-entrezgene-perl all 1.730-2 [48.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.0 MB in 0s (75.9 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6669 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.22-1_amd64.deb ... Unpacking libgdbm6:amd64 (1.22-1) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../02-libgdbm-compat4_1.22-1_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.22-1) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../03-libperl5.32_5.32.1-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-6) ... Selecting previously unselected package perl. Preparing to unpack .../04-perl_5.32.1-6_amd64.deb ... Unpacking perl (5.32.1-6) ... Selecting previously unselected package netbase. Preparing to unpack .../05-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package openssl. Preparing to unpack .../06-openssl_1.1.1l-1_amd64.deb ... Unpacking openssl (1.1.1l-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../07-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../08-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../09-libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../10-libbio-perl-perl_1.7.8-1_all.deb ... Unpacking libbio-perl-perl (1.7.8-1) ... Selecting previously unselected package liberror-perl. Preparing to unpack .../11-liberror-perl_0.17029-1_all.deb ... Unpacking liberror-perl (0.17029-1) ... Selecting previously unselected package libipc-sharelite-perl. Preparing to unpack .../12-libipc-sharelite-perl_0.17-4+b5_amd64.deb ... Unpacking libipc-sharelite-perl (0.17-4+b5) ... Selecting previously unselected package libcache-cache-perl. Preparing to unpack .../13-libcache-cache-perl_1.08-2_all.deb ... Unpacking libcache-cache-perl (1.08-2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../14-libhtml-tagset-perl_3.20-4_all.deb ... Unpacking libhtml-tagset-perl (3.20-4) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../15-liburi-perl_5.10-1_all.deb ... Unpacking liburi-perl (5.10-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../16-libhtml-parser-perl_3.76-1_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.76-1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../17-libcgi-pm-perl_4.53-1_all.deb ... Unpacking libcgi-pm-perl (4.53-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../18-libencode-locale-perl_1.05-1.1_all.deb ... Unpacking libencode-locale-perl (1.05-1.1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../19-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../20-libhttp-date-perl_6.05-1_all.deb ... Unpacking libhttp-date-perl (6.05-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../21-libio-html-perl_1.004-2_all.deb ... Unpacking libio-html-perl (1.004-2) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../22-liblwp-mediatypes-perl_6.04-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../23-libhttp-message-perl_6.35-1_all.deb ... Unpacking libhttp-message-perl (6.35-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../24-libfile-listing-perl_6.14-1_all.deb ... Unpacking libfile-listing-perl (6.14-1) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../25-libhtml-tree-perl_5.07-2_all.deb ... Unpacking libhtml-tree-perl (5.07-2) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../26-libhttp-cookies-perl_6.10-1_all.deb ... Unpacking libhttp-cookies-perl (6.10-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../27-libhttp-negotiate-perl_6.01-1_all.deb ... Unpacking libhttp-negotiate-perl (6.01-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../28-perl-openssl-defaults_5_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (5) ... Selecting previously unselected package libnet-ssleay-perl:amd64. Preparing to unpack .../29-libnet-ssleay-perl_1.90-1_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.90-1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../30-libio-socket-ssl-perl_2.072-1_all.deb ... Unpacking libio-socket-ssl-perl (2.072-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../31-libnet-http-perl_6.21-1_all.deb ... Unpacking libnet-http-perl (6.21-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../32-liblwp-protocol-https-perl_6.10-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.10-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../33-libtry-tiny-perl_0.31-1_all.deb ... Unpacking libtry-tiny-perl (0.31-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../34-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../35-libwww-perl_6.58-1_all.deb ... Unpacking libwww-perl (6.58-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../36-libexpat1_2.4.1-3_amd64.deb ... Unpacking libexpat1:amd64 (2.4.1-3) ... Selecting previously unselected package libxml-parser-perl:amd64. Preparing to unpack .../37-libxml-parser-perl_2.46-3_amd64.deb ... Unpacking libxml-parser-perl:amd64 (2.46-3) ... Selecting previously unselected package libxml-twig-perl. Preparing to unpack .../38-libxml-twig-perl_1%3a3.52-1_all.deb ... Unpacking libxml-twig-perl (1:3.52-1) ... Selecting previously unselected package libbio-db-ncbihelper-perl. Preparing to unpack .../39-libbio-db-ncbihelper-perl_1.7.6-4_all.deb ... Unpacking libbio-db-ncbihelper-perl (1.7.6-4) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../40-libxml-writer-perl_0.900-1_all.deb ... Unpacking libxml-writer-perl (0.900-1) ... Selecting previously unselected package libbio-variation-perl. Preparing to unpack .../41-libbio-variation-perl_1.7.5-2_all.deb ... Unpacking libbio-variation-perl (1.7.5-2) ... Selecting previously unselected package libbio-cluster-perl. Preparing to unpack .../42-libbio-cluster-perl_1.7.3-5_all.deb ... Unpacking libbio-cluster-perl (1.7.3-5) ... Selecting previously unselected package libbio-asn1-entrezgene-perl. Preparing to unpack .../43-libbio-asn1-entrezgene-perl_1.730-2_all.deb ... Unpacking libbio-asn1-entrezgene-perl (1.730-2) ... Setting up libexpat1:amd64 (2.4.1-3) ... Setting up perl-modules-5.32 (5.32.1-6) ... Setting up perl-openssl-defaults:amd64 (5) ... Setting up netbase (6.3) ... Setting up openssl (1.1.1l-1) ... Setting up libgdbm6:amd64 (1.22-1) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libgdbm-compat4:amd64 (1.22-1) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up perl (5.32.1-6) ... Setting up libxml-writer-perl (0.900-1) ... Setting up libio-html-perl (1.004-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liburi-perl (5.10-1) ... Setting up libnet-ssleay-perl:amd64 (1.90-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libfile-listing-perl (6.14-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libipc-sharelite-perl (0.17-4+b5) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up libnet-http-perl (6.21-1) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up liberror-perl (0.17029-1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libhtml-parser-perl:amd64 (3.76-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libio-socket-ssl-perl (2.072-1) ... Setting up libhttp-message-perl (6.35-1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libcache-cache-perl (1.08-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libcgi-pm-perl (4.53-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libwww-perl (6.58-1) ... Setting up libbio-cluster-perl (1.7.3-5) ... Setting up libbio-asn1-entrezgene-perl (1.730-2) ... Setting up libxml-parser-perl:amd64 (2.46-3) ... Setting up libxml-twig-perl (1:3.52-1) ... Setting up libbio-db-ncbihelper-perl (1.7.6-4) ... Setting up libbio-variation-perl (1.7.5-2) ... Processing triggers for libc-bin (2.32-4) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', '-y', 'install', 'libbio-variation-perl'] 0m14.4s INFO: Running scripts post_install 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_install_exceptions'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_install_exceptions'] 0m14.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m14.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m14.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpjp64p3_g to sid 0m14.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m14.8s INFO: Running scripts pre_distupgrade 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', 'update'] 0m18.5s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8873 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6642 kB] Fetched 15.7 MB in 3s (5486 kB/s) Reading package lists... 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', 'update'] 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', '-yf', 'dist-upgrade'] 0m23.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libbio-db-ncbihelper-perl libcache-cache-perl libcgi-pm-perl liberror-perl libipc-sharelite-perl Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: ca-certificates debianutils gcc-10-base gcc-11-base libbio-variation-perl libgcc-s1 libgcrypt20 libstdc++6 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2015 kB of archives. After this operation, 21.5 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.5-1 [93.7 kB] Get:2 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-12 [206 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-12 [576 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-12 [42.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.9.4-4 [662 kB] Get:6 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.3.0-13 [206 kB] Get:7 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20211016 [156 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libbio-variation-perl all 1.7.5-3 [72.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2015 kB in 0s (34.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10979 files and directories currently installed.) Preparing to unpack .../debianutils_5.5-1_amd64.deb ... Unpacking debianutils (5.5-1) over (4.11.2) ... Setting up debianutils (5.5-1) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10975 files and directories currently installed.) Preparing to unpack .../gcc-11-base_11.2.0-12_amd64.deb ... Unpacking gcc-11-base:amd64 (11.2.0-12) over (11.2.0-10) ... Setting up gcc-11-base:amd64 (11.2.0-12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10975 files and directories currently installed.) Preparing to unpack .../libstdc++6_11.2.0-12_amd64.deb ... Unpacking libstdc++6:amd64 (11.2.0-12) over (11.2.0-10) ... Setting up libstdc++6:amd64 (11.2.0-12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10975 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11.2.0-12_amd64.deb ... Unpacking libgcc-s1:amd64 (11.2.0-12) over (11.2.0-10) ... Setting up libgcc-s1:amd64 (11.2.0-12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10975 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.9.4-4_amd64.deb ... Unpacking libgcrypt20:amd64 (1.9.4-4) over (1.9.4-3+b1) ... Setting up libgcrypt20:amd64 (1.9.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10976 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10.3.0-13_amd64.deb ... Unpacking gcc-10-base:amd64 (10.3.0-13) over (10.3.0-12) ... Preparing to unpack .../ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) over (20210119) ... Preparing to unpack .../libbio-variation-perl_1.7.5-3_all.deb ... Unpacking libbio-variation-perl (1.7.5-3) over (1.7.5-2) ... Setting up libbio-variation-perl (1.7.5-3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 9 removed; done. Setting up gcc-10-base:amd64 (10.3.0-13) ... Processing triggers for libc-bin (2.32-4) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', '-yf', 'dist-upgrade'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.8s DUMP: 83c8093566a038a0a332b7c9d542b2b2 - 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'show', '--no-all-versions', 'libbio-variation-perl'] 0m24.0s DUMP: Package: libbio-variation-perl Version: 1.7.5-3 Installed-Size: 232 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libbio-perl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl Breaks: libbio-perl-perl (<< 1.7.3) Description-en: BioPerl variation-related functionality The code in this distribution focuses on simple low-dependency variant-related functionality for BioPerl. . Bio::Variation name space contains modules to store sequence variation information as differences between the reference sequence and changes sequences. Also included are classes to write out and recrete objects from EMBL-like flat files and XML. Lastly, there are simple classes to calculate values for sequence change objects. Description-md5: 63c4017b0ec43832aa03a6efe20ad2e3 Homepage: https://metacpan.org/release/Bio-Variation Section: perl Priority: optional Filename: pool/main/libb/libbio-variation-perl/libbio-variation-perl_1.7.5-3_all.deb Size: 72624 MD5sum: 3be6c3cec8af16aa804b299b531ed67f SHA256: 4e65a655d4e43a13a790542b7b1005b7a0342232b4b89244f94dbe82dd672e64 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'show', '--no-all-versions', 'libbio-variation-perl'] 0m24.0s INFO: apt-cache knows about the following packages: libbio-variation-perl 0m24.0s INFO: Running scripts pre_install 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_database-server'] 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_database-server'] 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_exceptions'] 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_exceptions'] 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_extras'] 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_extras'] 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy'] 0m24.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy', 'libbio-variation-perl'] 0m24.1s DUMP: libbio-variation-perl: Installed: 1.7.5-3 Candidate: 1.7.5-3 Version table: *** 1.7.5-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy', 'libbio-variation-perl'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', '-y', 'install', 'libbio-variation-perl'] 0m24.5s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-variation-perl is already the newest version (1.7.5-3). The following packages were automatically installed and are no longer required: libbio-db-ncbihelper-perl libcache-cache-perl libcgi-pm-perl liberror-perl libipc-sharelite-perl Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', '-y', 'install', 'libbio-variation-perl'] 0m24.5s INFO: Running scripts post_install 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_install_exceptions'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_install_exceptions'] 0m24.5s INFO: Running scripts post_distupgrade 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_distupgrade_exceptions'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_distupgrade_exceptions'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_distupgrade_zz_backports'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_distupgrade_zz_backports'] 0m24.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m25.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m25.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m25.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m25.3s INFO: Running scripts pre_install 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_database-server'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_database-server'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_exceptions'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_exceptions'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_extras'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_extras'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy'] 0m25.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy', 'libbio-variation-perl'] 0m25.4s DUMP: libbio-variation-perl: Installed: 1.7.5-3 Candidate: 1.7.5-3 Version table: *** 1.7.5-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-cache', 'policy', 'libbio-variation-perl'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', '-y', 'install', 'libbio-variation-perl=1.7.5-3'] 0m25.8s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-variation-perl is already the newest version (1.7.5-3). The following packages were automatically installed and are no longer required: libbio-db-ncbihelper-perl libcache-cache-perl libcgi-pm-perl liberror-perl libipc-sharelite-perl Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', '-y', 'install', 'libbio-variation-perl=1.7.5-3'] 0m25.8s INFO: Running scripts post_install 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_install_exceptions'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_install_exceptions'] 0m25.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m26.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m26.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', '-ac', '--ignore-obsolete'] 0m27.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', '-ac', '--ignore-obsolete'] 0m27.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.7s DUMP: 0.15.2 0m27.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.7s INFO: Running adequate version 0.15.2 now. 0m27.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'libbio-variation-perl'] 0m27.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'libbio-variation-perl'] 0m27.8s INFO: Running scripts pre_remove 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_exceptions'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/pre_remove_exceptions'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.13 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-5 install ok installed bsdutils bsdutils 1:2.37.2-4 install ok installed ca-certificates ca-certificates 20211016 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.5-1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-13 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-12 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.13 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.730-2 install ok installed libbio-cluster-perl libbio-cluster-perl 1.7.3-5 install ok installed libbio-db-ncbihelper-perl libbio-db-ncbihelper-perl 1.7.6-4 install ok installed libbio-perl-perl libbio-perl-perl 1.7.8-1 install ok installed libbio-variation-perl libbio-variation-perl 1.7.5-3 install ok installed libblkid1:amd64 libblkid1 2.37.2-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.32-4 install ok installed libc6:amd64 libc6 2.32-4 install ok installed libcache-cache-perl libcache-cache-perl 1.08-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.53-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.26-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1.1 install ok installed liberror-perl liberror-perl 0.17029-1 install ok installed libexpat1:amd64 libexpat1 2.4.1-3 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libfile-listing-perl libfile-listing-perl 6.14-1 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-12 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-4 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.22-1 install ok installed libgdbm6:amd64 libgdbm6 1.22-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhtml-parser-perl:amd64 libhtml-parser-perl 3.76-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-4 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.10-1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-1 install ok installed libhttp-message-perl libhttp-message-perl 6.35-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libio-html-perl libio-html-perl 1.004-2 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.072-1 install ok installed libio-string-perl libio-string-perl 1.08-3.1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-4+b5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.10-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-4 install ok installed libnet-http-perl libnet-http-perl 6.21-1 install ok installed libnet-ssleay-perl:amd64 libnet-ssleay-perl 1.90-1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-5 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-10 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-10 install ok installed libpam-runtime libpam-runtime 1.4.0-10 install ok installed libpam0g:amd64 libpam0g 1.4.0-10 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-4 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-12 install ok installed libsystemd0:amd64 libsystemd0 249.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.3-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libtry-tiny-perl libtry-tiny-perl 0.31-1 install ok installed libudev1:amd64 libudev1 249.7-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed liburi-perl liburi-perl 5.10-1 install ok installed libuuid1:amd64 libuuid1 2.37.2-4 install ok installed libwww-perl libwww-perl 6.58-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libxml-parser-perl:amd64 libxml-parser-perl 2.46-3 install ok installed libxml-twig-perl libxml-twig-perl 1:3.52-1 install ok installed libxml-writer-perl libxml-writer-perl 0.900-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-4 install ok installed ncurses-base ncurses-base 6.3-1 install ok installed ncurses-bin ncurses-bin 6.3-1 install ok installed netbase netbase 6.3 install ok installed openssl openssl 1.1.1l-1 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl perl 5.32.1-6 install ok installed perl-base perl-base 5.32.1-6 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-6 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 5 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.00-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', 'remove', 'ca-certificates', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-db-ncbihelper-perl', 'libbio-perl-perl', 'libcache-cache-perl', 'libcgi-pm-perl', 'libdata-stag-perl', 'libencode-locale-perl', 'liberror-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-sharelite-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl:amd64', 'libperl5.32:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-writer-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'libbio-variation-perl'] 0m29.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-db-ncbihelper-perl libbio-perl-perl libbio-variation-perl libcache-cache-perl libcgi-pm-perl libdata-stag-perl libencode-locale-perl liberror-perl libexpat1 libfile-listing-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libipc-sharelite-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.32 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-twig-perl libxml-writer-perl netbase openssl perl perl-modules-5.32 perl-openssl-defaults 0 upgraded, 0 newly installed, 44 to remove and 0 not upgraded. After this operation, 66.5 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10974 files and directories currently installed.) Removing libbio-db-ncbihelper-perl (1.7.6-4) ... Removing libbio-asn1-entrezgene-perl (1.730-2) ... Removing libbio-cluster-perl (1.7.3-5) ... Removing libbio-variation-perl (1.7.5-3) ... Removing libxml-twig-perl (1:3.52-1) ... Removing libxml-parser-perl:amd64 (2.46-3) ... Removing libbio-perl-perl (1.7.8-1) ... Removing libcache-cache-perl (1.08-2) ... Removing libcgi-pm-perl (4.53-1) ... Removing libdata-stag-perl (0.14-2) ... Removing liberror-perl (0.17029-1) ... Removing libexpat1:amd64 (2.4.1-3) ... Removing libxml-writer-perl (0.900-1) ... Removing libio-string-perl (1.08-3.1) ... Removing libipc-sharelite-perl (0.17-4+b5) ... Removing liblwp-protocol-https-perl (6.10-1) ... Removing libwww-perl (6.58-1) ... Removing ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.01-1) ... Removing libhttp-cookies-perl (6.10-1) ... Removing libhttp-message-perl (6.35-1) ... Removing libencode-locale-perl (1.05-1.1) ... Removing libfile-listing-perl (6.14-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libhttp-date-perl (6.05-1) ... Removing libio-socket-ssl-perl (2.072-1) ... Removing libnet-ssleay-perl:amd64 (1.90-1) ... Removing libnet-http-perl (6.21-1) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl:amd64 (3.76-1) ... Removing libhtml-tagset-perl (3.20-4) ... Removing libio-html-perl (1.004-2) ... Removing liblwp-mediatypes-perl (6.04-1) ... Removing libtimedate-perl (2.3300-2) ... Removing libtry-tiny-perl (0.31-1) ... Removing netbase (6.3) ... Removing openssl (1.1.1l-1) ... Removing perl-openssl-defaults:amd64 (5) ... Removing liburi-perl (5.10-1) ... Removing perl (5.32.1-6) ... Removing libperl5.32:amd64 (5.32.1-6) ... Removing libgdbm-compat4:amd64 (1.22-1) ... Removing libgdbm6:amd64 (1.22-1) ... Removing perl-modules-5.32 (5.32.1-6) ... Processing triggers for libc-bin (2.32-4) ... 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', 'remove', 'ca-certificates', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-db-ncbihelper-perl', 'libbio-perl-perl', 'libcache-cache-perl', 'libcgi-pm-perl', 'libdata-stag-perl', 'libencode-locale-perl', 'liberror-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-sharelite-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl:amd64', 'libperl5.32:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-writer-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'libbio-variation-perl'] 0m29.7s INFO: Running scripts post_remove 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_remove_exceptions'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_remove_exceptions'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg', '--purge', 'ca-certificates', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-db-ncbihelper-perl', 'libbio-perl-perl', 'libcache-cache-perl', 'libcgi-pm-perl', 'libdata-stag-perl', 'libencode-locale-perl', 'liberror-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-sharelite-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl:amd64', 'libperl5.32:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-writer-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64'] 0m29.8s DUMP: (Reading database ... 6676 files and directories currently installed.) Purging configuration files for ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libbio-asn1-entrezgene-perl which isn't installed dpkg: warning: ignoring request to remove libbio-cluster-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-ncbihelper-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libipc-sharelite-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed Purging configuration files for netbase (6.3) ... Purging configuration files for openssl (1.1.1l-1) ... Purging configuration files for perl (5.32.1-6) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg', '--purge', 'ca-certificates', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-db-ncbihelper-perl', 'libbio-perl-perl', 'libcache-cache-perl', 'libcgi-pm-perl', 'libdata-stag-perl', 'libencode-locale-perl', 'liberror-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-sharelite-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl:amd64', 'libperl5.32:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-writer-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg', '--purge', 'libbio-variation-perl'] 0m29.8s DUMP: dpkg: warning: ignoring request to remove libbio-variation-perl which isn't installed 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg', '--purge', 'libbio-variation-perl'] 0m29.8s INFO: Running scripts post_purge 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_purge_exceptions'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_purge_exceptions'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg', '--purge', '--pending'] 0m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg', '--purge', '--pending'] 0m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg', '--remove', '--pending'] 0m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg', '--remove', '--pending'] 0m29.9s INFO: Running scripts post_test 0m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_test_exceptions'] 0m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'tmp/scripts/post_test_exceptions'] 0m29.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m30.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg-divert', '--list'] 0m30.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'dpkg-divert', '--list'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', 'clean'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g', 'apt-get', 'clean'] 0m30.1s DEBUG: Recording chroot state 0m30.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/shm'] 0m30.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/shm'] 0m30.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/console'] 0m30.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/console'] 0m30.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/ptmx'] 0m30.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/ptmx'] 0m30.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/pts'] 0m30.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/dev/pts'] 0m30.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/proc'] 0m30.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g/proc'] 0m30.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m30.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjp64p3_g'] 0m30.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpjp64p3_g 0m30.8s INFO: PASS: Upgrading between Debian distributions. 0m30.8s INFO: PASS: All tests. 0m30.8s INFO: piuparts run ends. ret=0 End: 2021-12-02 15:19:00 GMT