Start: 2024-10-07 17:31:15 GMT [testing] Package: libbiojava-java Source: biojava-live Version: 1:1.9.7+dfsg-1 Installed-Size: 19 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libbiojava1.7-java Depends: libbiojava1.9-java Conflicts: libbiojava1.7-java Description: Java API to biological data and applications (default version) Homepage: https://www.biojava.org Description-md5: 6680837a07d5ec02bc947ca5b946490e Tag: devel::lang:java, devel::library, field::biology, field::biology:bioinformatics, implemented-in::java, role::devel-lib Section: java Priority: optional Filename: pool/main/b/biojava-live/libbiojava-java_1.9.7+dfsg-1_all.deb Size: 5512 MD5sum: ab782163f0e532230201e8c8b6fd1191 SHA256: 35f95518a1301f6d796384fd45a31b594f7faf2d824b352f3d3281169ea477c8 [sid] Package: libbiojava-java Source: biojava-live Version: 1:1.9.7+dfsg-2 Installed-Size: 19 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libbiojava1.7-java Depends: libbiojava1.9-java Conflicts: libbiojava1.7-java Description: Java API to biological data and applications (default version) Homepage: https://www.biojava.org Description-md5: 6680837a07d5ec02bc947ca5b946490e Tag: devel::lang:java, devel::library, field::biology, field::biology:bioinformatics, implemented-in::java, role::devel-lib Section: java Priority: optional Filename: pool/main/b/biojava-live/libbiojava-java_1.9.7+dfsg-2_all.deb Size: 5552 MD5sum: 704c8314d95b835199800c4def80c727 SHA256: bd9afd161cd82b63e08c2c737f3f3528c74d68c59ebeb779b96aba708b0216ef Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libbiojava-java=1:1.9.7+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libbiojava-java=1:1.9.7+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpabpasjke 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpabpasjke 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpabpasjke', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpabpasjke', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpabpasjke/proc'] 0m0.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpabpasjke/proc'] 0m0.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/pts'] 0m0.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/pts'] 0m0.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/ptmx'] 0m0.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/ptmx'] 0m0.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/console'] 0m1.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/console'] 0m1.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/shm'] 0m1.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/shm'] 0m1.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m1.0s DEBUG: Created policy-rc.d and chmodded it. 0m1.0s DEBUG: Created resolv.conf. 0m1.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpabpasjke/tmp/scripts/ 0m1.0s INFO: Running scripts post_chroot_unpack 0m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', 'update'] 0m4.0s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [169 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9311 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6212 kB] Fetched 15.7 MB in 2s (8618 kB/s) Reading package lists... 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', 'update'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.5s DUMP: ad27b6bf8a70d2eb8a19d9bb15cf3dca - 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.5s INFO: Running scripts post_setup 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_dummy_users'] 0m6.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_dummy_users'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_forbid_home'] 0m6.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_forbid_home'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.6s DUMP: install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b1 install ok installed bsdutils bsdutils 1:2.40.2-8 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-3 install ok installed gpgv gpgv 2.2.43-8+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-4 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-4+b1 install ok installed libblkid1:amd64 libblkid1 2.40.2-8 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-2 install ok installed libc6:amd64 libc6 2.40-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-8 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-8 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 256.6-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.6-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-8 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-8 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-8 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.10-2 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-8 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m7.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m7.0s INFO: Running scripts is_testable 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s INFO: Running scripts pre_test 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_test_exceptions'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_test_exceptions'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_test_root_password'] 0m7.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_test_root_password'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'show', '--no-all-versions', 'libbiojava-java'] 0m7.4s DUMP: Package: libbiojava-java Source: biojava-live Version: 1:1.9.7+dfsg-1 Installed-Size: 19 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libbiojava1.7-java Depends: libbiojava1.9-java Conflicts: libbiojava1.7-java Description-en: Java API to biological data and applications (default version) BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It includes objects for manipulating sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, and powerful analysis and statistical routines including a dynamic programming toolkit. . BioJava is provided by a vibrant community which meets annually at the Bioinformatics Open Source Conference (BOSC) that traditionally accompanies the Intelligent Systems in Molecular Biology (ISMB) meeting. Much like BioPerl, the employment of this library is valuable for everybody active in the field because of the many tricks of the trade one learns just by communicating on the mailing list. . This is a dependency package which should enable smooth upgrades to new versions. Description-md5: 6680837a07d5ec02bc947ca5b946490e Homepage: https://www.biojava.org Tag: devel::lang:java, devel::library, field::biology, field::biology:bioinformatics, implemented-in::java, role::devel-lib Section: java Priority: optional Filename: pool/main/b/biojava-live/libbiojava-java_1.9.7+dfsg-1_all.deb Size: 5512 MD5sum: ab782163f0e532230201e8c8b6fd1191 SHA256: 35f95518a1301f6d796384fd45a31b594f7faf2d824b352f3d3281169ea477c8 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'show', '--no-all-versions', 'libbiojava-java'] 0m7.4s INFO: apt-cache knows about the following packages: libbiojava-java 0m7.4s INFO: Running scripts pre_install 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_database-server'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_database-server'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_exceptions'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_exceptions'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_extras'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_extras'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy'] 0m7.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy', 'libbiojava-java'] 0m7.6s DUMP: libbiojava-java: Installed: (none) Candidate: 1:1.9.7+dfsg-1 Version table: 1:1.9.7+dfsg-1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy', 'libbiojava-java'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', '-y', 'install', 'libbiojava-java'] 0m9.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libatinject-jsr330-api-java libbiojava1.9-java libcommons-dbcp-java libcommons-pool-java liberror-prone-java libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java Suggested packages: libatinject-jsr330-api-java-doc libbiojava-java-doc libgeronimo-jta-1.2-spec-java libjsr305-java-doc The following NEW packages will be installed: libatinject-jsr330-api-java libbiojava-java libbiojava1.9-java libcommons-dbcp-java libcommons-pool-java liberror-prone-java libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 6609 kB of archives. After this operation, 7844 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:2 http://deb.debian.org/debian trixie/main amd64 libcommons-pool-java all 1.6-5 [109 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libcommons-dbcp-java all 1.4-8 [157 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libjgraph-java all 5.12.4.2+dfsg-7 [207 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libjgrapht0.8-java all 0.8.3-6 [214 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libbiojava1.9-java all 1:1.9.7+dfsg-1 [3154 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libbiojava-java all 1:1.9.7+dfsg-1 [5512 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 6609 kB in 0s (47.8 MB/s) Selecting previously unselected package libatinject-jsr330-api-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5145 files and directories currently installed.) Preparing to unpack .../0-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... Selecting previously unselected package libcommons-pool-java. Preparing to unpack .../1-libcommons-pool-java_1.6-5_all.deb ... Unpacking libcommons-pool-java (1.6-5) ... Selecting previously unselected package libcommons-dbcp-java. Preparing to unpack .../2-libcommons-dbcp-java_1.4-8_all.deb ... Unpacking libcommons-dbcp-java (1.4-8) ... Selecting previously unselected package liberror-prone-java. Preparing to unpack .../3-liberror-prone-java_2.18.0-1_all.deb ... Unpacking liberror-prone-java (2.18.0-1) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../4-libjsr305-java_0.1~+svn49-11_all.deb ... Unpacking libjsr305-java (0.1~+svn49-11) ... Selecting previously unselected package libguava-java. Preparing to unpack .../5-libguava-java_32.0.1-1_all.deb ... Unpacking libguava-java (32.0.1-1) ... Selecting previously unselected package libjgraph-java. Preparing to unpack .../6-libjgraph-java_5.12.4.2+dfsg-7_all.deb ... Unpacking libjgraph-java (5.12.4.2+dfsg-7) ... Selecting previously unselected package libjgrapht0.8-java. Preparing to unpack .../7-libjgrapht0.8-java_0.8.3-6_all.deb ... Unpacking libjgrapht0.8-java (0.8.3-6) ... Selecting previously unselected package libbiojava1.9-java. Preparing to unpack .../8-libbiojava1.9-java_1%3a1.9.7+dfsg-1_all.deb ... Unpacking libbiojava1.9-java (1:1.9.7+dfsg-1) ... Selecting previously unselected package libbiojava-java. Preparing to unpack .../9-libbiojava-java_1%3a1.9.7+dfsg-1_all.deb ... Unpacking libbiojava-java (1:1.9.7+dfsg-1) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libcommons-pool-java (1.6-5) ... Setting up libjgraph-java (5.12.4.2+dfsg-7) ... Setting up libcommons-dbcp-java (1.4-8) ... Setting up libjgrapht0.8-java (0.8.3-6) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libguava-java (32.0.1-1) ... Setting up libbiojava1.9-java (1:1.9.7+dfsg-1) ... Setting up libbiojava-java (1:1.9.7+dfsg-1) ... 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', '-y', 'install', 'libbiojava-java'] 0m9.8s INFO: Running scripts post_install 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_install_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_install_exceptions'] 0m9.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m10.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m10.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpabpasjke to sid 0m10.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m10.6s INFO: Running scripts pre_distupgrade 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', 'update'] 0m14.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9998 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7327 kB] Fetched 17.5 MB in 3s (5194 kB/s) Reading package lists... 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', 'update'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', '-yf', 'dist-upgrade'] 0m19.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils gcc-14-base gpgv libaudit-common libaudit1 libbiojava-java libbiojava1.9-java libblkid1 libc-bin libc6 libgcc-s1 libjgrapht0.8-java libmount1 libsmartcols1 libstdc++6 libuuid1 login mount tzdata util-linux 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 10.3 MB of archives. After this operation, 422 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.2-9 [105 kB] Get:2 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-6 [46.7 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-6 [72.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-6 [715 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.40-3 [2807 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.2-9 [35.6 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.2-9 [168 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.2-9 [199 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.2-9 [139 kB] Get:10 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.2-9 [1216 kB] Get:11 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.2-9 [154 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.40-3 [627 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.0.1-1 [12.3 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.0.1-1 [54.5 kB] Get:15 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.40.2-9 [81.4 kB] Get:16 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.44-1 [218 kB] Get:17 http://deb.debian.org/debian sid/main amd64 tzdata all 2024b-2 [256 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libjgrapht0.8-java all 0.8.3-7 [216 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libbiojava1.9-java all 1:1.9.7+dfsg-2 [3164 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libbiojava-java all 1:1.9.7+dfsg-2 [5552 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.3 MB in 0s (68.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.2-9_amd64.deb ... Unpacking bsdutils (1:2.40.2-9) over (1:2.40.2-8) ... Setting up bsdutils (1:2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.2.0-6_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-6) over (14.2.0-3) ... Setting up gcc-14-base:amd64 (14.2.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-6_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-6) over (14.2.0-3) ... Setting up libgcc-s1:amd64 (14.2.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-6_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-6) over (14.2.0-3) ... Setting up libstdc++6:amd64 (14.2.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../libc6_2.40-3_amd64.deb ... Unpacking libc6:amd64 (2.40-3) over (2.40-2) ... Setting up libc6:amd64 (2.40-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40.2-9_amd64.deb ... Unpacking libuuid1:amd64 (2.40.2-9) over (2.40.2-8) ... Setting up libuuid1:amd64 (2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../libblkid1_2.40.2-9_amd64.deb ... Unpacking libblkid1:amd64 (2.40.2-9) over (2.40.2-8) ... Setting up libblkid1:amd64 (2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../libmount1_2.40.2-9_amd64.deb ... Unpacking libmount1:amd64 (2.40.2-9) over (2.40.2-8) ... Setting up libmount1:amd64 (2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.2-9_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40.2-9) over (2.40.2-8) ... Setting up libsmartcols1:amd64 (2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.2-9_amd64.deb ... Unpacking util-linux (2.40.2-9) over (2.40.2-8) ... Setting up util-linux (2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../mount_2.40.2-9_amd64.deb ... Unpacking mount (2.40.2-9) over (2.40.2-8) ... Preparing to unpack .../libc-bin_2.40-3_amd64.deb ... Unpacking libc-bin (2.40-3) over (2.40-2) ... Setting up libc-bin (2.40-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.1-1_all.deb ... Unpacking libaudit-common (1:4.0.1-1) over (1:3.1.2-4) ... Setting up libaudit-common (1:4.0.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5409 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.1-1) over (1:3.1.2-4+b1) ... Setting up libaudit1:amd64 (1:4.0.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5408 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.40.2-9_amd64.deb ... Unpacking login (1:4.16.0-2+really2.40.2-9) over (1:4.16.0-2+really2.40.2-8) ... Preparing to unpack .../gpgv_2.2.44-1_amd64.deb ... Unpacking gpgv (2.2.44-1) over (2.2.43-8+b1) ... Setting up gpgv (2.2.44-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5407 files and directories currently installed.) Preparing to unpack .../tzdata_2024b-2_all.deb ... Unpacking tzdata (2024b-2) over (2024a-4) ... Preparing to unpack .../libjgrapht0.8-java_0.8.3-7_all.deb ... Unpacking libjgrapht0.8-java (0.8.3-7) over (0.8.3-6) ... Preparing to unpack .../libbiojava1.9-java_1%3a1.9.7+dfsg-2_all.deb ... Unpacking libbiojava1.9-java (1:1.9.7+dfsg-2) over (1:1.9.7+dfsg-1) ... Preparing to unpack .../libbiojava-java_1%3a1.9.7+dfsg-2_all.deb ... Unpacking libbiojava-java (1:1.9.7+dfsg-2) over (1:1.9.7+dfsg-1) ... Setting up libjgrapht0.8-java (0.8.3-7) ... Setting up tzdata (2024b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Oct 7 17:31:35 UTC 2024. Universal Time is now: Mon Oct 7 17:31:35 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libbiojava1.9-java (1:1.9.7+dfsg-2) ... Setting up mount (2.40.2-9) ... Setting up login (1:4.16.0-2+really2.40.2-9) ... Setting up libbiojava-java (1:1.9.7+dfsg-2) ... Processing triggers for libc-bin (2.40-3) ... 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', '-yf', 'dist-upgrade'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.7s DUMP: 4cc978d123f4ce111fb27f97136fb52e - 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'show', '--no-all-versions', 'libbiojava-java'] 0m19.9s DUMP: Package: libbiojava-java Source: biojava-live Version: 1:1.9.7+dfsg-2 Installed-Size: 19 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libbiojava1.7-java Depends: libbiojava1.9-java Conflicts: libbiojava1.7-java Description-en: Java API to biological data and applications (default version) BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It includes objects for manipulating sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, and powerful analysis and statistical routines including a dynamic programming toolkit. . BioJava is provided by a vibrant community which meets annually at the Bioinformatics Open Source Conference (BOSC) that traditionally accompanies the Intelligent Systems in Molecular Biology (ISMB) meeting. Much like BioPerl, the employment of this library is valuable for everybody active in the field because of the many tricks of the trade one learns just by communicating on the mailing list. . This is a dependency package which should enable smooth upgrades to new versions. Description-md5: 6680837a07d5ec02bc947ca5b946490e Homepage: https://www.biojava.org Tag: devel::lang:java, devel::library, field::biology, field::biology:bioinformatics, implemented-in::java, role::devel-lib Section: java Priority: optional Filename: pool/main/b/biojava-live/libbiojava-java_1.9.7+dfsg-2_all.deb Size: 5552 MD5sum: 704c8314d95b835199800c4def80c727 SHA256: bd9afd161cd82b63e08c2c737f3f3528c74d68c59ebeb779b96aba708b0216ef 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'show', '--no-all-versions', 'libbiojava-java'] 0m19.9s INFO: apt-cache knows about the following packages: libbiojava-java 0m19.9s INFO: Running scripts pre_install 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_database-server'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_database-server'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_exceptions'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_exceptions'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_extras'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_extras'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy'] 0m20.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy', 'libbiojava-java'] 0m20.0s DUMP: libbiojava-java: Installed: 1:1.9.7+dfsg-2 Candidate: 1:1.9.7+dfsg-2 Version table: *** 1:1.9.7+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy', 'libbiojava-java'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', '-y', 'install', 'libbiojava-java'] 0m20.8s DUMP: Reading package lists... Building dependency tree... Reading state information... libbiojava-java is already the newest version (1:1.9.7+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', '-y', 'install', 'libbiojava-java'] 0m20.8s INFO: Running scripts post_install 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_install_exceptions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_install_exceptions'] 0m20.8s INFO: Running scripts post_distupgrade 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m21.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m21.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m22.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m22.1s INFO: Running scripts pre_install 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_database-server'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_database-server'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_exceptions'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_exceptions'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_extras'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_extras'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy'] 0m22.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy', 'libbiojava-java'] 0m22.3s DUMP: libbiojava-java: Installed: 1:1.9.7+dfsg-2 Candidate: 1:1.9.7+dfsg-2 Version table: *** 1:1.9.7+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-cache', 'policy', 'libbiojava-java'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', '-y', 'install', 'libbiojava-java=1:1.9.7+dfsg-2'] 0m23.1s DUMP: Reading package lists... Building dependency tree... Reading state information... libbiojava-java is already the newest version (1:1.9.7+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', '-y', 'install', 'libbiojava-java=1:1.9.7+dfsg-2'] 0m23.1s INFO: Running scripts post_install 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_install_exceptions'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_install_exceptions'] 0m23.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m23.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m24.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpabpasjke', '-ac', '--ignore-obsolete'] 0m24.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpabpasjke', '-ac', '--ignore-obsolete'] 0m24.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.8s DUMP: 0.15.6 0m24.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.8s INFO: Running adequate version 0.15.6 now. 0m24.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'libbiojava-java'] 0m24.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'libbiojava-java'] 0m24.9s INFO: Running scripts pre_remove 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_exceptions'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/pre_remove_exceptions'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.7s DUMP: install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b1 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libbiojava-java libbiojava-java 1:1.9.7+dfsg-2 install ok installed libbiojava1.9-java libbiojava1.9-java 1:1.9.7+dfsg-2 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcommons-dbcp-java libcommons-dbcp-java 1.4-8 install ok installed libcommons-pool-java libcommons-pool-java 1.6-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed liberror-prone-java liberror-prone-java 2.18.0-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libguava-java libguava-java 32.0.1-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libjgraph-java libjgraph-java 5.12.4.2+dfsg-7 install ok installed libjgrapht0.8-java libjgrapht0.8-java 0.8.3-7 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 256.6-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.6-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.10-2 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-2 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', 'remove', 'libatinject-jsr330-api-java', 'libbiojava1.9-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'liberror-prone-java', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java', 'libbiojava-java'] 0m26.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libatinject-jsr330-api-java libbiojava-java libbiojava1.9-java libcommons-dbcp-java libcommons-pool-java liberror-prone-java libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java 0 upgraded, 0 newly installed, 10 to remove and 0 not upgraded. After this operation, 7855 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5406 files and directories currently installed.) Removing libbiojava-java (1:1.9.7+dfsg-2) ... Removing libbiojava1.9-java (1:1.9.7+dfsg-2) ... Removing libcommons-dbcp-java (1.4-8) ... Removing libcommons-pool-java (1.6-5) ... Removing libjgrapht0.8-java (0.8.3-7) ... Removing libjgraph-java (5.12.4.2+dfsg-7) ... Removing libguava-java (32.0.1-1) ... Removing liberror-prone-java (2.18.0-1) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Removing libjsr305-java (0.1~+svn49-11) ... 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', 'remove', 'libatinject-jsr330-api-java', 'libbiojava1.9-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'liberror-prone-java', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java', 'libbiojava-java'] 0m26.6s INFO: Running scripts post_remove 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_remove_exceptions'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_remove_exceptions'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg', '--purge', 'libatinject-jsr330-api-java', 'libbiojava1.9-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'liberror-prone-java', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java'] 0m26.7s DUMP: dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libbiojava1.9-java which isn't installed dpkg: warning: ignoring request to remove libcommons-dbcp-java which isn't installed dpkg: warning: ignoring request to remove libcommons-pool-java which isn't installed dpkg: warning: ignoring request to remove liberror-prone-java which isn't installed dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libjgraph-java which isn't installed dpkg: warning: ignoring request to remove libjgrapht0.8-java which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg', '--purge', 'libatinject-jsr330-api-java', 'libbiojava1.9-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'liberror-prone-java', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg', '--purge', 'libbiojava-java'] 0m26.7s DUMP: dpkg: warning: ignoring request to remove libbiojava-java which isn't installed 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg', '--purge', 'libbiojava-java'] 0m26.7s INFO: Running scripts post_purge 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_purge_exceptions'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_purge_exceptions'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg', '--purge', '--pending'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg', '--purge', '--pending'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg', '--remove', '--pending'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg', '--remove', '--pending'] 0m26.7s INFO: Running scripts post_test 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_test_exceptions'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'tmp/scripts/post_test_exceptions'] 0m26.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m27.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg-divert', '--list'] 0m27.2s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'dpkg-divert', '--list'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', 'clean'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpabpasjke', 'apt-get', 'clean'] 0m27.2s DEBUG: Recording chroot state 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/shm'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/shm'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/console'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/console'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/ptmx'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/ptmx'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/pts'] 0m28.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpabpasjke/dev/pts'] 0m28.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpabpasjke/proc'] 0m28.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpabpasjke/proc'] 0m28.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m28.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpabpasjke'] 0m28.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpabpasjke 0m28.8s INFO: PASS: Upgrading between Debian distributions. 0m28.8s INFO: PASS: All tests. 0m28.8s INFO: piuparts run ends. ret=0 End: 2024-10-07 17:31:45 GMT