Start: 2024-03-01 17:13:37 GMT [testing] Package: libcctbx-dev Source: cctbx (2022.9+ds2+~3.11.2+ds1-6) Version: 2022.9+ds2+~3.11.2+ds1-6+b1 Installed-Size: 8525 Maintainer: Debian Science Maintainers Architecture: amd64 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2022.9+ds2+~3.11.2+ds1-6+b1) Description: Computational Crystallography Toolbox - headers Homepage: https://github.com/cctbx/cctbx_project Description-md5: 80927143262a36c2492844dcd04ad8bd Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: devel Priority: optional Filename: pool/main/c/cctbx/libcctbx-dev_2022.9+ds2+~3.11.2+ds1-6+b1_amd64.deb Size: 1147576 MD5sum: 9b90b54204a9576b5e93ae45d61a4379 SHA256: f7f1fbcaea36a0cef398c76be546e938fa353d16d1110efe90541ac914439c1c [sid] Package: libcctbx-dev Source: cctbx Version: 2023.12+ds2+~3.17.0+ds1-4 Installed-Size: 8588 Maintainer: Debian Science Maintainers Architecture: amd64 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2023.12+ds2+~3.17.0+ds1-4) Description: Computational Crystallography Toolbox - headers Homepage: https://github.com/cctbx/cctbx_project Description-md5: 80927143262a36c2492844dcd04ad8bd Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: devel Priority: optional Filename: pool/main/c/cctbx/libcctbx-dev_2023.12+ds2+~3.17.0+ds1-4_amd64.deb Size: 1156668 MD5sum: a07e44e099d28b9a42dcaa930a84491a SHA256: 499066b94db2b79c27a4175d337aaee6fb70049aa9641651fd227d008818b225 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt 'libcctbx-dev=2023.12+ds2+~3.17.0+ds1-4' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311836~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt 'libcctbx-dev=2023.12+ds2+~3.17.0+ds1-4' 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpx0066ofk 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpx0066ofk 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpx0066ofk/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', 'update'] 0m1.8s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', 'update'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: 0942a352c5bc637c4fdbc12bf31cd5ba - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u5 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u4 install ok installed libc6:amd64 libc6 2.36-9+deb12u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.22-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.22-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m4.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 0m4.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 0m4.3s INFO: Running scripts is_testable 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s INFO: Running scripts pre_test 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_test_root_password'] 0m4.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_test_root_password'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'show', '--no-all-versions', 'libcctbx-dev'] 0m4.6s DUMP: Package: libcctbx-dev Source: cctbx (2022.9+ds2+~3.11.2+ds1-6) Version: 2022.9+ds2+~3.11.2+ds1-6+b1 Installed-Size: 8525 Maintainer: Debian Science Maintainers Architecture: amd64 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2022.9+ds2+~3.11.2+ds1-6+b1) Description-en: Computational Crystallography Toolbox - headers Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide everythings needed to link against the cctbx libraries. Description-md5: 80927143262a36c2492844dcd04ad8bd Homepage: https://github.com/cctbx/cctbx_project Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: devel Priority: optional Filename: pool/main/c/cctbx/libcctbx-dev_2022.9+ds2+~3.11.2+ds1-6+b1_amd64.deb Size: 1147576 MD5sum: 9b90b54204a9576b5e93ae45d61a4379 SHA256: f7f1fbcaea36a0cef398c76be546e938fa353d16d1110efe90541ac914439c1c 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'show', '--no-all-versions', 'libcctbx-dev'] 0m4.6s INFO: apt-cache knows about the following packages: libcctbx-dev 0m4.6s INFO: Running scripts pre_install 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy'] 0m4.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.5,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy', 'libcctbx-dev'] 0m4.7s DUMP: libcctbx-dev: Installed: (none) Candidate: 2022.9+ds2+~3.11.2+ds1-6+b1 Version table: 2022.9+ds2+~3.11.2+ds1-6+b1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy', 'libcctbx-dev'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-y', 'install', 'libcctbx-dev'] 0m19.1s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libaec0 libann-cctbx-dev libann-cctbx0 libasan8 libatomic1 libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcbf1 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcctbx0 libcrypt-dev libcurl4 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblsan0 libmmdb2-0 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libpsl5 libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 linux-libc-dev media-types python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev Suggested packages: libboost1.74-doc gccxml libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc manpages-dev krb5-doc krb5-user libstdc++-12-doc python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binutils binfmt-support readline-doc Recommended packages: manpages manpages-dev libc-devtools ca-certificates javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules The following NEW packages will be installed: libaec0 libann-cctbx-dev libann-cctbx0 libasan8 libatomic1 libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcbf1 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcctbx-dev libcctbx0 libcrypt-dev libcurl4 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblsan0 libmmdb2-0 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libpsl5 libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 linux-libc-dev media-types python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 52.1 MB of archives. After this operation, 333 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u2 [2019 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:22 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libann-cctbx0 amd64 1.1.2+doc-9+b1 [32.4 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libann-cctbx-dev amd64 1.1.2+doc-9+b1 [44.6 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:28 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u4 [45.4 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.76-1 [1930 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u4 [1897 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libboost-python1.74.0 amd64 1.74.0+ds1-21 [289 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get:50 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libboost-python1.74-dev amd64 1.74.0+ds1-21 [310 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libboost-python-dev amd64 1.74.0.3 [4632 B] Get:59 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u5 [390 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get:69 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libcbf1 amd64 0.9.7+dfsg1-2+b2 [353 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libccp4-data all 8.0.0-2 [62.3 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libccp4c0 amd64 8.0.0-2 [88.5 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libmmdb2-0 amd64 2.0.22-1 [338 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libccp4f0 amd64 8.0.0-2 [210 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libccp4-dev amd64 8.0.0-2 [42.8 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libcctbx0 amd64 2022.9+ds2+~3.11.2+ds1-6+b1 [2369 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libcctbx-dev amd64 2022.9+ds2+~3.11.2+ds1-6+b1 [1148 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.1 MB in 1s (37.8 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6100 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.11-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1~deb12u2) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6936 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../01-libaec0_1.0.6-1+b1_amd64.deb ... Unpacking libaec0:amd64 (1.0.6-1+b1) ... Selecting previously unselected package libann-cctbx0. Preparing to unpack .../02-libann-cctbx0_1.1.2+doc-9+b1_amd64.deb ... 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Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.11-dev:amd64. Preparing to unpack .../26-libpython3.11-dev_3.11.2-6_amd64.deb ... Unpacking libpython3.11-dev:amd64 (3.11.2-6) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../27-libpython3-dev_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.11.2-1+b1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../28-python3.11-dev_3.11.2-6_amd64.deb ... Unpacking python3.11-dev (3.11.2-6) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../29-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../30-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package libjs-jquery. 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Unpacking libboost-python-dev (1.74.0.3) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../37-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../38-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../39-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../40-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../41-libnghttp2-14_1.52.0-1+deb12u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... 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Unpacking libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Selecting previously unselected package libcbf1:amd64. Preparing to unpack .../48-libcbf1_0.9.7+dfsg1-2+b2_amd64.deb ... Unpacking libcbf1:amd64 (0.9.7+dfsg1-2+b2) ... Selecting previously unselected package libccp4-data. Preparing to unpack .../49-libccp4-data_8.0.0-2_all.deb ... Unpacking libccp4-data (8.0.0-2) ... Selecting previously unselected package libccp4c0:amd64. Preparing to unpack .../50-libccp4c0_8.0.0-2_amd64.deb ... Unpacking libccp4c0:amd64 (8.0.0-2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../51-libgfortran5_12.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14) ... Selecting previously unselected package libmmdb2-0:amd64. Preparing to unpack .../52-libmmdb2-0_2.0.22-1_amd64.deb ... Unpacking libmmdb2-0:amd64 (2.0.22-1) ... Selecting previously unselected package libccp4f0:amd64. Preparing to unpack .../53-libccp4f0_8.0.0-2_amd64.deb ... Unpacking libccp4f0:amd64 (8.0.0-2) ... Selecting previously unselected package libccp4-dev:amd64. Preparing to unpack .../54-libccp4-dev_8.0.0-2_amd64.deb ... Unpacking libccp4-dev:amd64 (8.0.0-2) ... Selecting previously unselected package libcctbx0. Preparing to unpack .../55-libcctbx0_2022.9+ds2+~3.11.2+ds1-6+b1_amd64.deb ... Unpacking libcctbx0 (2022.9+ds2+~3.11.2+ds1-6+b1) ... Selecting previously unselected package libcctbx-dev. Preparing to unpack .../56-libcctbx-dev_2022.9+ds2+~3.11.2+ds1-6+b1_amd64.deb ... Unpacking libcctbx-dev (2022.9+ds2+~3.11.2+ds1-6+b1) ... Setting up media-types (10.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up libmmdb2-0:amd64 (2.0.22-1) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Setting up linux-libc-dev:amd64 (6.1.76-1) ... Setting up libccp4-data (8.0.0-2) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up libaec0:amd64 (1.0.6-1+b1) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up rpcsvc-proto (1.4.3-1) ... Setting up libann-cctbx0 (1.1.2+doc-9+b1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libccp4c0:amd64 (8.0.0-2) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libubsan1:amd64 (12.2.0-14) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up libasan8:amd64 (12.2.0-14) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libtsan2:amd64 (12.2.0-14) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libboost-python1.74.0 (1.74.0+ds1-21) ... Setting up libc-dev-bin (2.36-9+deb12u4) ... Setting up readline-common (8.2-1.3) ... Setting up liblsan0:amd64 (12.2.0-14) ... Setting up libsz2:amd64 (1.0.6-1+b1) ... Setting up libitm1:amd64 (12.2.0-14) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libann-cctbx-dev (1.1.2+doc-9+b1) ... Setting up libccp4f0:amd64 (8.0.0-2) ... Setting up libccp4-dev:amd64 (8.0.0-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libcurl4:amd64 (7.88.1-10+deb12u5) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libcbf1:amd64 (0.9.7+dfsg1-2+b2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-9+deb12u4) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up libcctbx0 (2022.9+ds2+~3.11.2+ds1-6+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up python3 (3.11.2-1+b1) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-distutils (3.11.2-3) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up libboost-python1.74-dev (1.74.0+ds1-21) ... Setting up libboost-python-dev (1.74.0.3) ... Setting up libcctbx-dev (2022.9+ds2+~3.11.2+ds1-6+b1) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-y', 'install', 'libcctbx-dev'] 0m19.1s INFO: Running scripts post_install 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_install_exceptions'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_install_exceptions'] 0m19.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 0m20.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 0m20.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpx0066ofk to sid 0m20.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m20.0s INFO: Running scripts pre_distupgrade 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', 'update'] 0m25.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9921 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7219 kB] Fetched 17.3 MB in 4s (4582 kB/s) Reading package lists... 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', 'update'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-yf', 'dist-upgrade'] 0m53.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gcc-13-base libaec0 libann-cctbx-dev libann-cctbx0 libasan8 libatomic1 libboost-python1.74.0 libboost-python1.83.0 libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcbf1t64 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcctbx0 libcrypt-dev libcurl4 libdb5.3t64 libexpat1 libexpat1-dev libgcc-12-dev libgcc-13-dev libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1 libhwasan0 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblsan0 libmmdb2-0 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libpsl5 libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libstdc++-12-dev libstdc++-13-dev libsz2 libtirpc-common libtirpc-dev libtirpc3t64 libtsan2 libubsan1 linux-libc-dev media-types netbase python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0 libboost-python-dev libboost-python1.74-dev libcbf1 libcctbx-dev libcom-err2 libdb5.3 libext2fs2 libgnutls30 libpython3.11 libss2 libtirpc3 libuuid1 The following NEW packages will be installed: gcc-13-base gcc-14-base libapt-pkg6.0t64 libboost-python1.83.0 libcbf1t64 libcom-err2t64 libdb5.3t64 libext2fs2t64 libgcc-13-dev libgnutls30t64 libhwasan0 libpython3.11t64 libss2t64 libstdc++-13-dev libtirpc3t64 libunistring5 libuuid1t64 netbase The following packages have been kept back: util-linux The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils coreutils dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils gcc-12-base gpgv grep hostname init-system-helpers libacl1 libaec0 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libblkid1 libboost-python1.74.0 libboost1.74-dev libbrotli1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcctbx0 libcrypt-dev libcrypt1 libcurl4 libdebconfclient0 libexpat1 libexpat1-dev libffi8 libgcc-12-dev libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhdf5-103-1 libhogweed6 libidn2-0 libitm1 libjs-sphinxdoc libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblsan0 liblz4-1 liblzma5 libmd0 libmmdb2-0 libmount1 libncursesw6 libnettle8 libnghttp2-14 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpsl5 libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libstdc++6 libsystemd0 libsz2 libtasn1-6 libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libxxhash0 libzstd1 linux-libc-dev login logsave mawk media-types mount ncurses-base ncurses-bin passwd perl-base python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-dev python3.11-minimal readline-common sed sysvinit-utils tar tzdata usr-is-merged util-linux-extra zlib1g zlib1g-dev 140 upgraded, 18 newly installed, 13 to remove and 1 not upgraded. Need to get 88.8 MB of archives. After this operation, 46.3 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13 [70.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.16 [88.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:4 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-6.1 [97.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-3 [66.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.37-15.1 [1905 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.37-15.1 [47.1 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.1 [10.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libtirpc-dev amd64 1.3.4+ds-1.1 [189 kB] Get:11 http://deb.debian.org/debian sid/main amd64 python3.11-dev amd64 3.11.8-2 [509 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.11-dev amd64 3.11.8-2 [4575 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libexpat1-dev amd64 2.6.0-1 [154 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.0-1 [101 kB] Get:15 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3+b1 [919 kB] Get:16 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3+b1 [87.8 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libpython3.11t64 amd64 3.11.8-2 [1992 kB] Get:18 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:19 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.8-2 [597 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.8-2 [2037 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.1.5-1 [2063 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.8-2 [1827 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.8-2 [817 kB] Get:24 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:30 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-1+b2 [61.6 kB] Get:31 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.0-0.2 [250 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255.4-1 [364 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-2.1 [11.4 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.4-2 [16.9 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-2.1 [48.5 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:37 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-3 [1643 kB] Get:38 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.86 [119 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.3-6 [67.7 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2 [74.8 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-6 [54.2 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-6 [260 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-5 [697 kB] Get:45 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-1 [255 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5+b2 [38.2 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20240113-1 [342 kB] Get:50 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3.1 [69.2 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3+b1 [167 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libss2t64 amd64 1.47.0-2.3 [24.9 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libcom-err2t64 amd64 1.47.0-2.3 [20.2 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libext2fs2t64 amd64 1.47.0-2.3 [206 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libuuid1t64 amd64 2.39.3-6.1 [30.0 kB] Get:57 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2.3 [19.9 kB] Get:58 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2.3 [571 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.1 [82.5 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:65 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:66 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.6.15-2 [2247 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-15.1 [2752 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-15.1 [602 kB] Get:69 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14-20240221-2.1 [42.8 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14-20240221-2.1 [72.2 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:72 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3+b1 [2950 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14-20240221-2.1 [713 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255.4-1 [125 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.9.1-2+b1 [296 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.1-2 [421 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.3-1.1 [1425 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.7.13+b1 [984 kB] Get:83 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.13+b1 [1368 kB] Get:84 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:85 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.5 [1510 kB] Get:86 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:87 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:88 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:89 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:90 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:91 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-4 [616 kB] Get:92 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20240113-1 [431 kB] Get:93 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.9.1-2+b1 [328 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271+b1 [10.2 kB] Get:98 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:100 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b2 [90.3 kB] Get:102 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-4 [973 kB] Get:103 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:104 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.40-1.1+b1 [649 kB] Get:105 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:107 http://deb.debian.org/debian sid/main amd64 usr-is-merged all 39 [5572 B] Get:108 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:109 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20240113-1 [268 kB] Get:110 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-7 [32.2 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libssh2-1 amd64 1.11.0-4 [215 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libcurl4 amd64 8.6.0-3 [430 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.2-1 [23.4 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.2-1 [7684 B] Get:118 http://deb.debian.org/debian sid/main amd64 libhdf5-103-1 amd64 1.10.10+repack-3+b1 [1243 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libcctbx0 amd64 2023.12+ds2+~3.17.0+ds1-4 [2375 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libcbf1t64 amd64 0.9.7+dfsg1-3.1 [359 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-6.1 [159 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-6.1 [191 kB] Get:123 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-6.1 [143 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.11.6-1 [9460 B] Get:125 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.11.6-1 [26.1 kB] Get:126 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:127 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:128 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.11.5-1 [131 kB] Get:129 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 7.2.6-4 [150 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:132 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.3-6 [140 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-6.1 [116 kB] Get:134 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.39.3-6.1 [155 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-1 [32.4 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:138 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240123-1 [136 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14-20240221-2.1 [2724 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14-20240221-2.1 [1071 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libstdc++-12-dev amd64 12.3.0-14 [2069 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240221-2.1 [136 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14-20240221-2.1 [25.8 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14-20240221-2.1 [9212 B] Get:145 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14-20240221-2.1 [1200 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14-20240221-2.1 [147 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libgcc-12-dev amd64 12.3.0-14 [2432 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14-20240221-2.1 [2454 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240221-2.1 [836 kB] Get:150 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.3.0-14 [41.2 kB] Get:151 http://deb.debian.org/debian sid/main amd64 gcc-13-base amd64 13.2.0-16.1 [43.3 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libboost-python1.74.0 amd64 1.74.0+ds1-23.1 [337 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libboost-python1.83.0 amd64 1.83.0-2.1 [351 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14-20240221-2.1 [1485 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libgcc-13-dev amd64 13.2.0-16.1 [2543 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libstdc++-13-dev amd64 13.2.0-16.1 [2210 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libboost1.74-dev amd64 1.74.0+ds1-23.1 [9509 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libmmdb2-0 amd64 2.0.22-1+b1 [341 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 88.8 MB in 1s (99.6 MB/s) (Reading database ... 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Installing new version of config file /etc/security/namespace.init ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libsasl2-modules-db:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26986 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... 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Unpacking libsqlite3-0:amd64 (3.45.1-1) over (3.40.1-2) ... dpkg: libss2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libss2 (>= 1.38). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26204 files and directories currently installed.) Removing libss2:amd64 (1.47.0-2) ... Selecting previously unselected package libss2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26199 files and directories currently installed.) Preparing to unpack .../libss2t64_1.47.0-2.3_amd64.deb ... Unpacking libss2t64:amd64 (1.47.0-2.3) ... dpkg: libcom-err2:amd64: dependency problems, but removing anyway as you requested: libkrb5-3:amd64 depends on libcom-err2 (>= 1.43.9). libgssapi-krb5-2:amd64 depends on libcom-err2 (>= 1.43.9). e2fsprogs depends on libcom-err2 (>= 1.43.9). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26205 files and directories currently installed.) Removing libcom-err2:amd64 (1.47.0-2) ... Selecting previously unselected package libcom-err2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26200 files and directories currently installed.) Preparing to unpack .../libcom-err2t64_1.47.0-2.3_amd64.deb ... Unpacking libcom-err2t64:amd64 (1.47.0-2.3) ... dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.47.0-2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26206 files and directories currently installed.) Removing libext2fs2:amd64 (1.47.0-2) ... Selecting previously unselected package libext2fs2t64:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26207 files and directories currently installed.) Removing libuuid1:amd64 (2.38.1-5+b1) ... Selecting previously unselected package libuuid1t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26200 files and directories currently installed.) Preparing to unpack .../libuuid1t64_2.39.3-6.1_amd64.deb ... Unpacking libuuid1t64:amd64 (2.39.3-6.1) ... Preparing to unpack .../logsave_1.47.0-2.3_amd64.deb ... Unpacking logsave (1.47.0-2.3) over (1.47.0-2) ... Setting up libcom-err2t64:amd64 (1.47.0-2.3) ... Setting up libext2fs2t64:amd64 (1.47.0-2.3) ... Setting up libss2t64:amd64 (1.47.0-2.3) ... Setting up libuuid1t64:amd64 (2.39.3-6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26207 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2.3_amd64.deb ... Unpacking e2fsprogs (1.47.0-2.3) over (1.47.0-2) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty dpkg: libtirpc3:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libtirpc3 (>= 1.0.2). libnsl2:amd64 depends on libtirpc3 (>= 1.0.2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26205 files and directories currently installed.) Removing libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26198 files and directories currently installed.) Preparing to unpack .../0-libtirpc3t64_1.3.4+ds-1.1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.1) ... Preparing to unpack .../1-libgssapi-krb5-2_1.20.1-5+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-5+b1) over (1.20.1-2+deb12u1) ... Preparing to unpack .../2-libkrb5-3_1.20.1-5+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-5+b1) over (1.20.1-2+deb12u1) ... Preparing to unpack .../3-libk5crypto3_1.20.1-5+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-5+b1) over (1.20.1-2+deb12u1) ... Preparing to unpack .../4-libkrb5support0_1.20.1-5+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-5+b1) over (1.20.1-2+deb12u1) ... Preparing to unpack .../5-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) over (1.6.3-2) ... Preparing to unpack .../6-libnsl2_1.3.0-3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3) over (1.3.0-2) ... Preparing to unpack .../7-linux-libc-dev_6.6.15-2_all.deb ... Unpacking linux-libc-dev (6.6.15-2) over (6.1.76-1) ... Preparing to unpack .../8-libc6_2.37-15.1_amd64.deb ... Unpacking libc6:amd64 (2.37-15.1) over (2.36-9+deb12u4) ... Setting up libc6:amd64 (2.37-15.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27875 files and directories currently installed.) Preparing to unpack .../libc-bin_2.37-15.1_amd64.deb ... Unpacking libc-bin (2.37-15.1) over (2.36-9+deb12u4) ... Setting up libc-bin (2.37-15.1) ... Selecting previously unselected package gcc-14-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27875 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14-20240221-2.1_amd64.deb ... Unpacking gcc-14-base:amd64 (14-20240221-2.1) ... Setting up gcc-14-base:amd64 (14-20240221-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27880 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14-20240221-2.1_amd64.deb ... Unpacking libgcc-s1:amd64 (14-20240221-2.1) over (12.2.0-14) ... Setting up libgcc-s1:amd64 (14-20240221-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27880 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2+b1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-2+b1) over (2:6.2.1+dfsg1-1.1) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27881 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-3+b1_amd64.deb ... Unpacking coreutils (9.4-3+b1) over (9.1-1) ... Setting up coreutils (9.4-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27887 files and directories currently installed.) Preparing to unpack .../libstdc++6_14-20240221-2.1_amd64.deb ... Unpacking libstdc++6:amd64 (14-20240221-2.1) over (12.2.0-14) ... Setting up libstdc++6:amd64 (14-20240221-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27887 files and directories currently installed.) Preparing to unpack .../libudev1_255.4-1_amd64.deb ... Unpacking libudev1:amd64 (255.4-1) over (252.22-1~deb12u1) ... Setting up libudev1:amd64 (255.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27887 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b1) over (0.8.1-1) ... Setting up libxxhash0:amd64 (0.8.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27888 files and directories currently installed.) Preparing to unpack .../libnettle8_3.9.1-2+b1_amd64.deb ... Unpacking libnettle8:amd64 (3.9.1-2+b1) over (3.8.1-2) ... Setting up libnettle8:amd64 (3.9.1-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27889 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-4_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.3-4) over (0.24.1-2) ... Setting up libp11-kit0:amd64 (0.25.3-4) ... Selecting previously unselected package libunistring5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27889 files and directories currently installed.) Preparing to unpack .../libunistring5_1.1-2_amd64.deb ... Unpacking libunistring5:amd64 (1.1-2) ... Setting up libunistring5:amd64 (1.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27895 files and directories currently installed.) Preparing to unpack .../libsasl2-2_2.1.28+dfsg1-4+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) over (2.1.28+dfsg-10) ... Preparing to unpack .../libldap-2.5-0_2.5.13+dfsg-5+b3_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) over (2.5.13+dfsg-5) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: librtmp1:amd64 depends on libgnutls30 (>= 3.6.14). libldap-2.5-0:amd64 depends on libgnutls30 (>= 3.8.2). apt depends on libgnutls30 (>= 3.7.5). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27896 files and directories currently installed.) Removing libgnutls30:amd64 (3.7.9-2+deb12u2) ... Selecting previously unselected package libgnutls30t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27867 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.3-1.1_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.3-1.1) ... Setting up libgnutls30t64:amd64 (3.8.3-1.1) ... dpkg: libapt-pkg6.0:amd64: dependency problems, but removing anyway as you requested: apt depends on libapt-pkg6.0 (>= 2.6.1). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27896 files and directories currently installed.) Removing libapt-pkg6.0:amd64 (2.6.1) ... Selecting previously unselected package libapt-pkg6.0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27847 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.7.13+b1_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.7.13+b1) ... Setting up libapt-pkg6.0t64:amd64 (2.7.13+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27898 files and directories currently installed.) Preparing to unpack .../apt_2.7.13+b1_amd64.deb ... Unpacking apt (2.7.13+b1) over (2.6.1) ... Setting up apt (2.7.13+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27895 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3_amd64.deb ... Unpacking tar (1.35+dfsg-3) over (1.34+dfsg-1.2+deb12u1) ... Setting up tar (1.35+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27896 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.5_amd64.deb ... Unpacking dpkg (1.22.5) over (1.21.22) ... Setting up dpkg (1.22.5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27882 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_amd64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27883 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.9-1) ... Setting up sed (4.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27883 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.9.1-2+b1_amd64.deb ... Unpacking libhogweed6:amd64 (3.9.1-2+b1) over (3.8.1-2) ... Setting up libhogweed6:amd64 (3.9.1-2+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27885 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271+b1_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.271+b1) over (0.270) ... Setting up libdebconfclient0:amd64 (0.271+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27886 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.4-1) ... Setting up libsemanage-common (3.5-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27886 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b2_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1+b2) over (3.4-1+b5) ... Setting up libsemanage2:amd64 (3.5-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27886 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking passwd (1:4.13+dfsg1-4) over (1:4.13+dfsg1-1+b1) ... Setting up passwd (1:4.13+dfsg1-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27880 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.4_all.deb ... Unpacking debian-archive-keyring (2023.4) over (2023.3+deb12u1) ... Setting up debian-archive-keyring (2023.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27880 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1) over (2.5.4-1+b3) ... Setting up libseccomp2:amd64 (2.5.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27879 files and directories currently installed.) Preparing to unpack .../usr-is-merged_39_all.deb ... Unpacking usr-is-merged (39) over (37~deb12u1) ... Setting up usr-is-merged (39) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27879 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66_all.deb ... Unpacking init-system-helpers (1.66) over (1.65.2) ... Setting up init-system-helpers (1.66) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27879 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20240113-1_all.deb ... Unpacking ncurses-base (6.4+20240113-1) over (6.4-4) ... Setting up ncurses-base (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27877 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.08-7_amd64.deb ... Unpacking sysvinit-utils (3.08-7) over (3.06-4) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.08-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27877 files and directories currently installed.) Removing libcctbx-dev (2022.9+ds2+~3.11.2+ds1-6+b1) ... Removing libboost-python-dev (1.74.0.3) ... Removing libboost-python1.74-dev (1.74.0+ds1-21) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26866 files and directories currently installed.) Preparing to unpack .../0-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) over (1.0.9-2+b6) ... Preparing to unpack .../1-libnghttp2-14_1.59.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.59.0-1) over (1.52.0-1+deb12u1) ... Preparing to unpack .../2-libpsl5_0.21.2-1+b1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1+b1) over (0.21.2-1) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26865 files and directories currently installed.) Removing libcbf1:amd64 (0.9.7+dfsg1-2+b2) ... Selecting previously unselected package libcbf1t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26858 files and directories currently installed.) Preparing to unpack .../libcbf1t64_0.9.7+dfsg1-3.1_amd64.deb ... Unpacking libcbf1t64:amd64 (0.9.7+dfsg1-3.1) ... Preparing to unpack .../libblkid1_2.39.3-6.1_amd64.deb ... Unpacking libblkid1:amd64 (2.39.3-6.1) over (2.38.1-5+b1) ... Setting up libblkid1:amd64 (2.39.3-6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26864 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.3-6.1_amd64.deb ... Unpacking libmount1:amd64 (2.39.3-6.1) over (2.38.1-5+b1) ... Setting up libmount1:amd64 (2.39.3-6.1) ... (Reading database ... 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Setting up libexpat1:amd64 (2.6.0-1) ... Setting up python3.11-minimal (3.11.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26858 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.6-1_amd64.deb ... Unpacking python3-minimal (3.11.6-1) over (3.11.2-1+b1) ... Setting up python3-minimal (3.11.6-1) ... (Reading database ... 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Setting up python3.11 (3.11.8-2) ... Setting up libpython3-dev:amd64 (3.11.6-1) ... Setting up libcbf1t64:amd64 (0.9.7+dfsg1-3.1) ... Setting up python3.11-dev (3.11.8-2) ... Setting up python3 (3.11.6-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-distutils (3.11.5-1) ... Setting up libcctbx0 (2023.12+ds2+~3.17.0+ds1-4) ... Setting up python3-dev (3.11.6-1) ... Processing triggers for libc-bin (2.37-15.1) ... Processing triggers for debianutils (5.16) ... 0m53.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-yf', 'dist-upgrade'] 0m53.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m54.8s DUMP: 330acfde70600f3c7a600e6e7904bc9d - 0m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'show', '--no-all-versions', 'libcctbx-dev'] 0m55.1s DUMP: Package: libcctbx-dev Source: cctbx Version: 2023.12+ds2+~3.17.0+ds1-4 Installed-Size: 8588 Maintainer: Debian Science Maintainers Architecture: amd64 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2023.12+ds2+~3.17.0+ds1-4) Description-en: Computational Crystallography Toolbox - headers Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide everythings needed to link against the cctbx libraries. Description-md5: 80927143262a36c2492844dcd04ad8bd Homepage: https://github.com/cctbx/cctbx_project Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: devel Priority: optional Filename: pool/main/c/cctbx/libcctbx-dev_2023.12+ds2+~3.17.0+ds1-4_amd64.deb Size: 1156668 MD5sum: a07e44e099d28b9a42dcaa930a84491a SHA256: 499066b94db2b79c27a4175d337aaee6fb70049aa9641651fd227d008818b225 0m55.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'show', '--no-all-versions', 'libcctbx-dev'] 0m55.1s INFO: apt-cache knows about the following packages: libcctbx-dev 0m55.1s INFO: Running scripts pre_install 0m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_database-server'] 0m55.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_database-server'] 0m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_exceptions'] 0m55.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_exceptions'] 0m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_extras'] 0m55.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_extras'] 0m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture'] 0m55.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture'] 0m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m55.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy'] 0m55.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy'] 0m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy', 'libcctbx-dev'] 0m55.2s DUMP: libcctbx-dev: Installed: (none) Candidate: 2023.12+ds2+~3.17.0+ds1-4 Version table: 2023.12+ds2+~3.17.0+ds1-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy', 'libcctbx-dev'] 0m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-y', 'install', 'libcctbx-dev'] 0m59.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libboost-python1.74.0 libgcc-12-dev libnsl-dev libstdc++-12-dev libtirpc-dev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: libboost-python-dev libboost-python1.83-dev libboost1.83-dev Suggested packages: libboost1.83-doc gccxml libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev The following packages will be REMOVED: libboost1.74-dev The following NEW packages will be installed: libboost-python-dev libboost-python1.83-dev libboost1.83-dev libcctbx-dev 0 upgraded, 4 newly installed, 1 to remove and 1 not upgraded. Need to get 12.1 MB of archives. After this operation, 31.8 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-2.1 [10.6 MB] Get:2 http://deb.debian.org/debian sid/main amd64 libboost-python1.83-dev amd64 1.83.0-2.1 [379 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libboost-python-dev amd64 1.83.0.2+b2 [3892 B] Get:4 http://deb.debian.org/debian sid/main amd64 libcctbx-dev amd64 2023.12+ds2+~3.17.0+ds1-4 [1157 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.1 MB in 1s (15.9 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12488 files and directories currently installed.) Preparing to unpack .../libboost1.83-dev_1.83.0-2.1_amd64.deb ... Unpacking libboost1.83-dev:amd64 (1.83.0-2.1) ... Selecting previously unselected package libboost-python1.83-dev. Preparing to unpack .../libboost-python1.83-dev_1.83.0-2.1_amd64.deb ... Unpacking libboost-python1.83-dev (1.83.0-2.1) ... Selecting previously unselected package libboost-python-dev. Preparing to unpack .../libboost-python-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-python-dev (1.83.0.2+b2) ... Selecting previously unselected package libcctbx-dev. Preparing to unpack .../libcctbx-dev_2023.12+ds2+~3.17.0+ds1-4_amd64.deb ... Unpacking libcctbx-dev (2023.12+ds2+~3.17.0+ds1-4) ... Setting up libboost1.83-dev:amd64 (1.83.0-2.1) ... Setting up libboost-python1.83-dev (1.83.0-2.1) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up libcctbx-dev (2023.12+ds2+~3.17.0+ds1-4) ... 0m59.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-y', 'install', 'libcctbx-dev'] 0m59.4s INFO: Running scripts post_install 0m59.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_install_exceptions'] 0m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_install_exceptions'] 0m59.5s INFO: Running scripts post_distupgrade 0m59.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m59.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_distupgrade_exceptions'] 0m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_distupgrade_exceptions'] 0m59.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m59.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m59.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_distupgrade_zz_backports'] 0m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_distupgrade_zz_backports'] 0m59.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 1m0.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 1m0.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 1m1.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 1m1.4s INFO: Running scripts pre_install 1m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_database-server'] 1m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_database-server'] 1m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_exceptions'] 1m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_exceptions'] 1m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_extras'] 1m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_extras'] 1m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture'] 1m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture'] 1m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy'] 1m1.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy'] 1m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy', 'libcctbx-dev'] 1m1.6s DUMP: libcctbx-dev: Installed: 2023.12+ds2+~3.17.0+ds1-4 Candidate: 2023.12+ds2+~3.17.0+ds1-4 Version table: *** 2023.12+ds2+~3.17.0+ds1-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-cache', 'policy', 'libcctbx-dev'] 1m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-y', 'install', 'libcctbx-dev=2023.12+ds2+~3.17.0+ds1-4'] 1m2.3s DUMP: Reading package lists... Building dependency tree... Reading state information... libcctbx-dev is already the newest version (2023.12+ds2+~3.17.0+ds1-4). The following packages were automatically installed and are no longer required: libboost-python1.74.0 libgcc-12-dev libnsl-dev libstdc++-12-dev libtirpc-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 1m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-y', 'install', 'libcctbx-dev=2023.12+ds2+~3.17.0+ds1-4'] 1m2.3s INFO: Running scripts post_install 1m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_install_exceptions'] 1m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_install_exceptions'] 1m2.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 1m3.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 1m3.4s INFO: /bin converted to /usr/bin by /usr merge 1m3.4s INFO: /lib converted to /usr/lib by /usr merge 1m3.4s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m3.4s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m3.4s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m3.4s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m3.4s INFO: /sbin converted to /usr/sbin by /usr merge 1m5.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', '-ac', '--ignore-obsolete'] 1m7.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', '-ac', '--ignore-obsolete'] 1m7.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m7.7s DUMP: 0.15.6 1m7.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m7.7s INFO: Running adequate version 0.15.6 now. 1m7.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'libcctbx-dev'] 1m7.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'libcctbx-dev'] 1m7.9s INFO: Running scripts pre_remove 1m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_exceptions'] 1m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/pre_remove_exceptions'] 1m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m12.9s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.13+b1 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6.1 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.5 install ok installed e2fsprogs e2fsprogs 1.47.0-2.3 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-12-base:amd64 gcc-12-base 12.3.0-14 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-16.1 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240221-2.1 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libaec0:amd64 libaec0 1.1.2-1 install ok installed libann-cctbx-dev libann-cctbx-dev 1.1.2+doc-9+b1 install ok installed libann-cctbx0 libann-cctbx0 1.1.2+doc-9+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.13+b1 install ok installed libasan8:amd64 libasan8 14-20240221-2.1 install ok installed libatomic1:amd64 libatomic1 14-20240221-2.1 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.39.3-6.1 install ok installed libboost-python-dev libboost-python-dev 1.83.0.2+b2 install ok installed libboost-python1.74.0 libboost-python1.74.0 1.74.0+ds1-23.1 install ok installed libboost-python1.83-dev libboost-python1.83-dev 1.83.0-2.1 install ok installed libboost-python1.83.0 libboost-python1.83.0 1.83.0-2.1 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-2.1 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15.1 install ok installed libc-dev-bin libc-dev-bin 2.37-15.1 install ok installed libc6:amd64 libc6 2.37-15.1 install ok installed libc6-dev:amd64 libc6-dev 2.37-15.1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcbf1t64:amd64 libcbf1t64 0.9.7+dfsg1-3.1 install ok installed libccp4-data libccp4-data 8.0.0-2 install ok installed libccp4-dev:amd64 libccp4-dev 8.0.0-2 install ok installed libccp4c0:amd64 libccp4c0 8.0.0-2 install ok installed libccp4f0:amd64 libccp4f0 8.0.0-2 install ok installed libcctbx-dev libcctbx-dev 2023.12+ds2+~3.17.0+ds1-4 install ok installed libcctbx0 libcctbx0 2023.12+ds2+~3.17.0+ds1-4 install ok installed libcom-err2t64:amd64 libcom-err2t64 1.47.0-2.3 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl4:amd64 libcurl4 8.6.0-3 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b1 install ok installed libexpat1:amd64 libexpat1 2.6.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.6.0-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.3 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.3.0-14 install ok installed libgcc-13-dev:amd64 libgcc-13-dev 13.2.0-16.1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240221-2.1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgfortran5:amd64 libgfortran5 14-20240221-2.1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.3-1.1 install ok installed libgomp1:amd64 libgomp1 14-20240221-2.1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5+b1 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.10+repack-3+b1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2+b1 install ok installed libhwasan0:amd64 libhwasan0 14-20240221-2.1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libitm1:amd64 libitm1 14-20240221-2.1 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.2.6-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5+b1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5+b3 install ok installed liblsan0:amd64 liblsan0 14-20240221-2.1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.6.0-0.2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmmdb2-0:amd64 libmmdb2-0 2.0.22-1+b1 install ok installed libmount1:amd64 libmount1 2.39.3-6.1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-3 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-6 install ok installed libpam-runtime libpam-runtime 1.5.3-6 install ok installed libpam0g:amd64 libpam0g 1.5.3-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.11.6-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.8-2 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.8-2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.8-2 install ok installed libpython3.11t64:amd64 libpython3.11t64 3.11.8-2 install ok installed libquadmath0:amd64 libquadmath0 14-20240221-2.1 install ok installed libreadline8:amd64 libreadline8 8.2-3+b1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.1-1 install ok installed libss2t64:amd64 libss2t64 1.47.0-2.3 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-4 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.3.0-14 install ok installed libstdc++-13-dev:amd64 libstdc++-13-dev 13.2.0-16.1 install ok installed libstdc++6:amd64 libstdc++6 14-20240221-2.1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1 install ok installed libsz2:amd64 libsz2 1.1.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.4+ds-1.1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.1 install ok installed libtsan2:amd64 libtsan2 14-20240221-2.1 install ok installed libubsan1:amd64 libubsan1 14-20240221-2.1 install ok installed libudev1:amd64 libudev1 255.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1t64:amd64 libuuid1t64 2.39.3-6.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed linux-libc-dev linux-libc-dev 6.6.15-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.3 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.39.3-6.1 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3 install ok installed python3 python3 3.11.6-1 install ok installed python3-dev python3-dev 3.11.6-1 install ok installed python3-distutils python3-distutils 3.11.5-1 install ok installed python3-lib2to3 python3-lib2to3 3.11.5-1 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3.11 python3.11 3.11.8-2 install ok installed python3.11-dev python3.11-dev 3.11.8-2 install ok installed python3.11-minimal python3.11-minimal 3.11.8-2 install ok installed readline-common readline-common 8.2-3.1 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.39.3-6.1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg-3+b1 1m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-y', '--no-install-recommends', '--force-yes', 'install', 'libdb5.3:amd64=5.3.28+dfsg2-4+b1', 'gcc-13-base:amd64-', 'libaec0:amd64-', 'libann-cctbx-dev-', 'libann-cctbx0-', 'libasan8:amd64-', 'libatomic1:amd64-', 'libboost-python-dev-', 'libboost-python1.74.0-', 'libboost-python1.83-dev-', 'libboost-python1.83.0-', 'libboost1.83-dev:amd64-', 'libbrotli1:amd64-', 'libc-dev-bin-', 'libc6-dev:amd64-', 'libcbf1t64:amd64-', 'libccp4-data-', 'libccp4-dev:amd64-', 'libccp4c0:amd64-', 'libccp4f0:amd64-', 'libcctbx0-', 'libcrypt-dev:amd64-', 'libcurl4:amd64-', 'libdb5.3t64:amd64-', 'libexpat1:amd64-', 'libexpat1-dev:amd64-', 'libgcc-12-dev:amd64-', 'libgcc-13-dev:amd64-', 'libgfortran5:amd64-', 'libgomp1:amd64-', 'libgssapi-krb5-2:amd64-', 'libhdf5-103-1:amd64-', 'libhwasan0:amd64-', 'libitm1:amd64-', 'libjs-jquery-', 'libjs-sphinxdoc-', 'libjs-underscore-', 'libk5crypto3:amd64-', 'libkeyutils1:amd64-', 'libkrb5-3:amd64-', 'libkrb5support0:amd64-', 'libldap-2.5-0:amd64-', 'liblsan0:amd64-', 'libmmdb2-0:amd64-', 'libncursesw6:amd64-', 'libnghttp2-14:amd64-', 'libnsl-dev:amd64-', 'libnsl2:amd64-', 'libpsl5:amd64-', 'libpython3-dev:amd64-', 'libpython3-stdlib:amd64-', 'libpython3.11-dev:amd64-', 'libpython3.11-minimal:amd64-', 'libpython3.11-stdlib:amd64-', 'libpython3.11t64:amd64-', 'libquadmath0:amd64-', 'libreadline8:amd64-', 'librtmp1:amd64-', 'libsasl2-2:amd64-', 'libsasl2-modules-db:amd64-', 'libsqlite3-0:amd64-', 'libssh2-1:amd64-', 'libstdc++-12-dev:amd64-', 'libstdc++-13-dev:amd64-', 'libsz2:amd64-', 'libtirpc-common-', 'libtirpc-dev:amd64-', 'libtirpc3t64:amd64-', 'libtsan2:amd64-', 'libubsan1:amd64-', 'linux-libc-dev-', 'media-types-', 'netbase-', 'python3-', 'python3-dev-', 'python3-distutils-', 'python3-lib2to3-', 'python3-minimal-', 'python3.11-', 'python3.11-dev-', 'python3.11-minimal-', 'readline-common-', 'rpcsvc-proto-', 'zlib1g-dev:amd64-', 'libcctbx-dev-'] 1m15.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gcc-13-base libaec0 libann-cctbx-dev libann-cctbx0 libasan8 libatomic1 libboost-python-dev libboost-python1.74.0 libboost-python1.83-dev libboost-python1.83.0 libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcbf1t64 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcctbx-dev libcctbx0 libcrypt-dev libcurl4 libdb5.3t64 libexpat1 libexpat1-dev libgcc-12-dev libgcc-13-dev libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1 libhwasan0 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblsan0 libmmdb2-0 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libpsl5 libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libstdc++-12-dev libstdc++-13-dev libsz2 libtirpc-common libtirpc-dev libtirpc3t64 libtsan2 libubsan1 linux-libc-dev media-types netbase python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev The following NEW packages will be installed: libdb5.3 0 upgraded, 1 newly installed, 84 to remove and 1 not upgraded. Need to get 697 kB of archives. After this operation, 402 MB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4+b1 [697 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 697 kB in 0s (13.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30469 files and directories currently installed.) Removing libcctbx-dev (2023.12+ds2+~3.17.0+ds1-4) ... Removing libboost-python-dev (1.83.0.2+b2) ... Removing libboost-python1.83-dev (1.83.0-2.1) ... Removing libboost1.83-dev:amd64 (1.83.0-2.1) ... Removing libstdc++-13-dev:amd64 (13.2.0-16.1) ... Removing libgcc-13-dev:amd64 (13.2.0-16.1) ... Removing gcc-13-base:amd64 (13.2.0-16.1) ... Removing libcctbx0 (2023.12+ds2+~3.17.0+ds1-4) ... Removing libcbf1t64:amd64 (0.9.7+dfsg1-3.1) ... Removing libhdf5-103-1:amd64 (1.10.10+repack-3+b1) ... Removing libsz2:amd64 (1.1.2-1) ... Removing libaec0:amd64 (1.1.2-1) ... Removing libann-cctbx-dev (1.1.2+doc-9+b1) ... Removing libann-cctbx0 (1.1.2+doc-9+b1) ... Removing libstdc++-12-dev:amd64 (12.3.0-14) ... Removing libgcc-12-dev:amd64 (12.3.0-14) ... Removing libasan8:amd64 (14-20240221-2.1) ... Removing libatomic1:amd64 (14-20240221-2.1) ... Removing libboost-python1.74.0 (1.74.0+ds1-23.1) ... Removing libboost-python1.83.0 (1.83.0-2.1) ... Removing libcurl4:amd64 (8.6.0-3) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing python3-dev (3.11.6-1) ... Removing python3.11-dev (3.11.8-2) ... Removing libpython3-dev:amd64 (3.11.6-1) ... Removing libpython3.11-dev:amd64 (3.11.8-2) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg-3+b1) ... Removing libexpat1-dev:amd64 (2.6.0-1) ... Removing libc6-dev:amd64 (2.37-15.1) ... Removing libc-dev-bin (2.37-15.1) ... Removing libccp4-dev:amd64 (8.0.0-2) ... Removing libccp4f0:amd64 (8.0.0-2) ... Removing libccp4c0:amd64 (8.0.0-2) ... Removing libccp4-data (8.0.0-2) ... Removing libcrypt-dev:amd64 (1:4.4.36-4) ... Removing python3-distutils (3.11.5-1) ... Removing python3-lib2to3 (3.11.5-1) ... Removing python3 (3.11.6-1) ... Removing python3.11 (3.11.8-2) ... Removing libpython3.11t64:amd64 (3.11.8-2) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Removing python3-minimal (3.11.6-1) ... Removing python3.11-minimal (3.11.8-2) ... Removing libexpat1:amd64 (2.6.0-1) ... Removing libgfortran5:amd64 (14-20240221-2.1) ... Removing libgomp1:amd64 (14-20240221-2.1) ... Removing libnsl-dev:amd64 (1.3.0-3) ... Removing libtirpc-dev:amd64 (1.3.4+ds-1.1) ... Removing libhwasan0:amd64 (14-20240221-2.1) ... Removing libitm1:amd64 (14-20240221-2.1) ... Removing libjs-sphinxdoc (7.2.6-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing liblsan0:amd64 (14-20240221-2.1) ... Removing libmmdb2-0:amd64 (2.0.22-1+b1) ... Removing libnghttp2-14:amd64 (1.59.0-1) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing libquadmath0:amd64 (14-20240221-2.1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libssh2-1:amd64 (1.11.0-4) ... Removing libtsan2:amd64 (14-20240221-2.1) ... Removing libubsan1:amd64 (14-20240221-2.1) ... Removing linux-libc-dev (6.6.15-2) ... Removing rpcsvc-proto (1.4.3-1) ... Removing libpython3.11-stdlib:amd64 (3.11.8-2) ... find: '/usr/lib/python3': No such file or directory Removing libdb5.3t64:amd64 (5.3.28+dfsg2-5) ... Removing libnsl2:amd64 (1.3.0-3) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Removing libkrb5-3:amd64 (1.20.1-5+b1) ... Removing libk5crypto3:amd64 (1.20.1-5+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-5+b1) ... Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libpython3.11-minimal:amd64 (3.11.8-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-3+b1) ... Removing libsqlite3-0:amd64 (3.45.1-1) ... Removing libtirpc-common (1.3.4+ds-1.1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-3.1) ... Selecting previously unselected package libdb5.3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5334 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28+dfsg2-4+b1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28+dfsg2-4+b1) ... Setting up libdb5.3:amd64 (5.3.28+dfsg2-4+b1) ... Processing triggers for libc-bin (2.37-15.1) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. 1m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-y', '--no-install-recommends', '--force-yes', 'install', 'libdb5.3:amd64=5.3.28+dfsg2-4+b1', 'gcc-13-base:amd64-', 'libaec0:amd64-', 'libann-cctbx-dev-', 'libann-cctbx0-', 'libasan8:amd64-', 'libatomic1:amd64-', 'libboost-python-dev-', 'libboost-python1.74.0-', 'libboost-python1.83-dev-', 'libboost-python1.83.0-', 'libboost1.83-dev:amd64-', 'libbrotli1:amd64-', 'libc-dev-bin-', 'libc6-dev:amd64-', 'libcbf1t64:amd64-', 'libccp4-data-', 'libccp4-dev:amd64-', 'libccp4c0:amd64-', 'libccp4f0:amd64-', 'libcctbx0-', 'libcrypt-dev:amd64-', 'libcurl4:amd64-', 'libdb5.3t64:amd64-', 'libexpat1:amd64-', 'libexpat1-dev:amd64-', 'libgcc-12-dev:amd64-', 'libgcc-13-dev:amd64-', 'libgfortran5:amd64-', 'libgomp1:amd64-', 'libgssapi-krb5-2:amd64-', 'libhdf5-103-1:amd64-', 'libhwasan0:amd64-', 'libitm1:amd64-', 'libjs-jquery-', 'libjs-sphinxdoc-', 'libjs-underscore-', 'libk5crypto3:amd64-', 'libkeyutils1:amd64-', 'libkrb5-3:amd64-', 'libkrb5support0:amd64-', 'libldap-2.5-0:amd64-', 'liblsan0:amd64-', 'libmmdb2-0:amd64-', 'libncursesw6:amd64-', 'libnghttp2-14:amd64-', 'libnsl-dev:amd64-', 'libnsl2:amd64-', 'libpsl5:amd64-', 'libpython3-dev:amd64-', 'libpython3-stdlib:amd64-', 'libpython3.11-dev:amd64-', 'libpython3.11-minimal:amd64-', 'libpython3.11-stdlib:amd64-', 'libpython3.11t64:amd64-', 'libquadmath0:amd64-', 'libreadline8:amd64-', 'librtmp1:amd64-', 'libsasl2-2:amd64-', 'libsasl2-modules-db:amd64-', 'libsqlite3-0:amd64-', 'libssh2-1:amd64-', 'libstdc++-12-dev:amd64-', 'libstdc++-13-dev:amd64-', 'libsz2:amd64-', 'libtirpc-common-', 'libtirpc-dev:amd64-', 'libtirpc3t64:amd64-', 'libtsan2:amd64-', 'libubsan1:amd64-', 'linux-libc-dev-', 'media-types-', 'netbase-', 'python3-', 'python3-dev-', 'python3-distutils-', 'python3-lib2to3-', 'python3-minimal-', 'python3.11-', 'python3.11-dev-', 'python3.11-minimal-', 'readline-common-', 'rpcsvc-proto-', 'zlib1g-dev:amd64-', 'libcctbx-dev-'] 1m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-y', '--no-install-recommends', '--reinstall', 'install', 'libdb5.3:amd64=5.3.28+dfsg2-4+b1'] 1m16.9s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 1 not upgraded. Need to get 0 B/697 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5341 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28+dfsg2-4+b1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28+dfsg2-4+b1) over (5.3.28+dfsg2-4+b1) ... Setting up libdb5.3:amd64 (5.3.28+dfsg2-4+b1) ... Processing triggers for libc-bin (2.37-15.1) ... 1m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', '-y', '--no-install-recommends', '--reinstall', 'install', 'libdb5.3:amd64=5.3.28+dfsg2-4+b1'] 1m16.9s INFO: Running scripts post_remove 1m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_remove_exceptions'] 1m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_remove_exceptions'] 1m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg', '--purge', 'gcc-13-base:amd64', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libasan8:amd64', 'libatomic1:amd64', 'libboost-python-dev', 'libboost-python1.74.0', 'libboost-python1.83-dev', 'libboost-python1.83.0', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcbf1t64:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0:amd64', 'libccp4f0:amd64', 'libcctbx0', 'libcrypt-dev:amd64', 'libcurl4:amd64', 'libdb5.3t64:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhwasan0:amd64', 'libitm1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmmdb2-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libpsl5:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'python3', 'python3-dev', 'python3-distutils', 'python3-lib2to3', 'python3-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 1m17.0s DUMP: dpkg: warning: ignoring request to remove gcc-13-base which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libann-cctbx-dev which isn't installed dpkg: warning: ignoring request to remove libann-cctbx0 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libboost-python-dev which isn't installed dpkg: warning: ignoring request to remove libboost-python1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-python1.83-dev which isn't installed dpkg: warning: ignoring request to remove libboost-python1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcbf1t64 which isn't installed dpkg: warning: ignoring request to remove libccp4-data which isn't installed dpkg: warning: ignoring request to remove libccp4-dev which isn't installed dpkg: warning: ignoring request to remove libccp4c0 which isn't installed dpkg: warning: ignoring request to remove libccp4f0 which isn't installed dpkg: warning: ignoring request to remove libcctbx0 which isn't installed (Reading database ... 5341 files and directories currently installed.) Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-4) ... dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdb5.3t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-13-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmmdb2-0 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.8-2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11t64 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-13-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.1) ... dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for python3 (3.11.6-1) ... dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.8-2) ... Purging configuration files for readline-common (8.2-3.1) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg', '--purge', 'gcc-13-base:amd64', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libasan8:amd64', 'libatomic1:amd64', 'libboost-python-dev', 'libboost-python1.74.0', 'libboost-python1.83-dev', 'libboost-python1.83.0', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcbf1t64:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0:amd64', 'libccp4f0:amd64', 'libcctbx0', 'libcrypt-dev:amd64', 'libcurl4:amd64', 'libdb5.3t64:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhwasan0:amd64', 'libitm1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmmdb2-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libpsl5:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'python3', 'python3-dev', 'python3-distutils', 'python3-lib2to3', 'python3-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 1m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg', '--purge', 'libcctbx-dev'] 1m17.1s DUMP: dpkg: warning: ignoring request to remove libcctbx-dev which isn't installed 1m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg', '--purge', 'libcctbx-dev'] 1m17.1s INFO: Running scripts post_purge 1m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_purge_exceptions'] 1m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_purge_exceptions'] 1m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg', '--purge', '--pending'] 1m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg', '--purge', '--pending'] 1m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg', '--remove', '--pending'] 1m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg', '--remove', '--pending'] 1m17.1s INFO: Running scripts post_test 1m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_test_exceptions'] 1m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'tmp/scripts/post_test_exceptions'] 1m17.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 1m17.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 1m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg-divert', '--list'] 1m17.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 1m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'dpkg-divert', '--list'] 1m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', 'clean'] 1m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx0066ofk', 'apt-get', 'clean'] 1m17.5s DEBUG: Recording chroot state 1m18.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/shm'] 1m18.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/shm'] 1m18.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/console'] 1m18.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/console'] 1m18.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/ptmx'] 1m18.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/ptmx'] 1m18.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/pts'] 1m18.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/dev/pts'] 1m18.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/proc'] 1m18.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpx0066ofk/proc'] 1m18.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 1m18.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpx0066ofk'] 1m18.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpx0066ofk 1m18.5s INFO: PASS: Upgrading between Debian distributions. 1m18.5s INFO: PASS: All tests. 1m18.5s INFO: piuparts run ends. ret=0 End: 2024-03-01 17:14:56 GMT