Start: 2024-11-20 22:20:35 GMT [testing] Package: libcctbx-dev Source: cctbx Version: 2024.8+ds2+~3.21.1+ds1-3 Installed-Size: 8602 Maintainer: Debian Science Maintainers Architecture: amd64 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2024.8+ds2+~3.21.1+ds1-3) Description: Computational Crystallography Toolbox - headers Homepage: https://github.com/cctbx/cctbx_project Description-md5: 80927143262a36c2492844dcd04ad8bd Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: devel Priority: optional Filename: pool/main/c/cctbx/libcctbx-dev_2024.8+ds2+~3.21.1+ds1-3_amd64.deb Size: 1160232 MD5sum: d5967e2685d87d00ea64c4c22a5b8829 SHA256: 92ad30fd6cb638e902d129a6af5ff0cf86d26f9cb10215bd3a22bae32fe5028e [sid] Package: libcctbx-dev Source: cctbx Version: 2024.10+ds2+~3.22.1+ds1-4 Installed-Size: 8605 Maintainer: Debian Science Maintainers Architecture: amd64 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2024.10+ds2+~3.22.1+ds1-4) Description: Computational Crystallography Toolbox - headers Homepage: https://github.com/cctbx/cctbx_project Description-md5: 80927143262a36c2492844dcd04ad8bd Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: devel Priority: optional Filename: pool/main/c/cctbx/libcctbx-dev_2024.10+ds2+~3.22.1+ds1-4_amd64.deb Size: 1160556 MD5sum: e95e49cf89048f0b23023af056918b78 SHA256: 0ff69405ba44ecf318e3a229a82d22a7a587081e2879e2d2696b14bc7bcb3664 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt 'libcctbx-dev=2024.10+ds2+~3.22.1+ds1-4' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt 'libcctbx-dev=2024.10+ds2+~3.22.1+ds1-4' 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpu_mcuw_2 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpu_mcuw_2 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpu_mcuw_2/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', 'update'] 0m1.8s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [172 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9362 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6258 kB] Fetched 15.8 MB in 1s (15.4 MB/s) Reading package lists... 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', 'update'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils debianutils libaudit-common libaudit1 libblkid1 libgnutls30t64 libmount1 libsmartcols1 libuuid1 login mount util-linux 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3710 kB of archives. After this operation, 7168 B disk space will be freed. Get:1 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.40.2-11 [105 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 debianutils amd64 5.21 [92.1 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.40.2-11 [35.9 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.40.2-11 [168 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.40.2-11 [199 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.40.2-11 [139 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.40.2-11 [1213 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.40.2-11 [155 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libaudit1 amd64 1:4.0.2-2 [54.9 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.40.2-11 [81.5 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3710 kB in 0s (38.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5158 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.2-11_amd64.deb ... Unpacking bsdutils (1:2.40.2-11) over (1:2.40.2-9) ... Setting up bsdutils (1:2.40.2-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5158 files and directories currently installed.) Preparing to unpack .../debianutils_5.21_amd64.deb ... Unpacking debianutils (5.21) over (5.20) ... Setting up debianutils (5.21) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5158 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40.2-11_amd64.deb ... Unpacking libuuid1:amd64 (2.40.2-11) over (2.40.2-9) ... Setting up libuuid1:amd64 (2.40.2-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5158 files and directories currently installed.) Preparing to unpack .../libblkid1_2.40.2-11_amd64.deb ... Unpacking libblkid1:amd64 (2.40.2-11) over (2.40.2-9) ... Setting up libblkid1:amd64 (2.40.2-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5158 files and directories currently installed.) Preparing to unpack .../libmount1_2.40.2-11_amd64.deb ... Unpacking libmount1:amd64 (2.40.2-11) over (2.40.2-9) ... Setting up libmount1:amd64 (2.40.2-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5158 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.2-11_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40.2-11) over (2.40.2-9) ... Setting up libsmartcols1:amd64 (2.40.2-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5158 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.2-11_amd64.deb ... Unpacking util-linux (2.40.2-11) over (2.40.2-9) ... Setting up util-linux (2.40.2-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5155 files and directories currently installed.) Preparing to unpack .../mount_2.40.2-11_amd64.deb ... Unpacking mount (2.40.2-11) over (2.40.2-9) ... Preparing to unpack .../libaudit-common_1%3a4.0.2-2_all.deb ... Unpacking libaudit-common (1:4.0.2-2) over (1:4.0.1-3) ... Setting up libaudit-common (1:4.0.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5155 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.2-2_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.2-2) over (1:4.0.1-3) ... Setting up libaudit1:amd64 (1:4.0.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5155 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.40.2-11_amd64.deb ... Unpacking login (1:4.16.0-2+really2.40.2-11) over (1:4.16.0-2+really2.40.2-9) ... Preparing to unpack .../libgnutls30t64_3.8.8-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.8-2) over (3.8.6-2+b1) ... Setting up libgnutls30t64:amd64 (3.8.8-2) ... Setting up mount (2.40.2-11) ... Setting up login (1:4.16.0-2+really2.40.2-11) ... Processing triggers for libc-bin (2.40-3) ... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s DUMP: e7b68c25035adf22d0ff2930698c015d - 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s INFO: Running scripts post_setup 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DUMP: install ok installed apt apt 2.9.10 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-11 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-8 install ok installed gpgv gpgv 2.2.45-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.10 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libblkid1:amd64 libblkid1 2.40.2-11 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-3+b1 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.273 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-11 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b2 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b3 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-11 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-8 install ok installed libsystemd0:amd64 libsystemd0 256.7-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 256.7-3 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-11 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-11 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-11 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.40.0-7 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-11 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m4.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m4.4s INFO: Running scripts is_testable 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s INFO: Running scripts pre_test 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_test_root_password'] 0m4.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_test_root_password'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'show', '--no-all-versions', 'libcctbx-dev'] 0m4.6s DUMP: Package: libcctbx-dev Source: cctbx Version: 2024.8+ds2+~3.21.1+ds1-3 Installed-Size: 8602 Maintainer: Debian Science Maintainers Architecture: amd64 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2024.8+ds2+~3.21.1+ds1-3) Description-en: Computational Crystallography Toolbox - headers Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide everythings needed to link against the cctbx libraries. Description-md5: 80927143262a36c2492844dcd04ad8bd Homepage: https://github.com/cctbx/cctbx_project Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: devel Priority: optional Filename: pool/main/c/cctbx/libcctbx-dev_2024.8+ds2+~3.21.1+ds1-3_amd64.deb Size: 1160232 MD5sum: d5967e2685d87d00ea64c4c22a5b8829 SHA256: 92ad30fd6cb638e902d129a6af5ff0cf86d26f9cb10215bd3a22bae32fe5028e 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'show', '--no-all-versions', 'libcctbx-dev'] 0m4.6s INFO: apt-cache knows about the following packages: libcctbx-dev 0m4.6s INFO: Running scripts pre_install 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy'] 0m4.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy', 'libcctbx-dev'] 0m4.7s DUMP: libcctbx-dev: Installed: (none) Candidate: 2024.8+ds2+~3.21.1+ds1-3 Version table: 2024.8+ds2+~3.21.1+ds1-3 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy', 'libcctbx-dev'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', '-y', 'install', 'libcctbx-dev'] 0m11.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libaec0 libann-cctbx-dev libann-cctbx0 libasan8 libatomic1 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx0 libcrypt-dev libcurl4t64 libexpat1 libexpat1-dev libgcc-14-dev libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhwasan0 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblsan0 libmmdb2-0 libncursesw6 libnghttp2-14 libnsl2 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libstdc++-14-dev libsz2 libtirpc-common libtirpc3t64 libtsan2 libubsan1 linux-libc-dev media-types netbase python3 python3-dev python3-minimal python3.12 python3.12-dev python3.12-minimal readline-common rpcsvc-proto zlib1g-dev Suggested packages: libboost1.83-doc gccxml libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc manpages-dev krb5-doc krb5-user libstdc++-14-doc python3-doc python3-tk python3-venv python3.12-venv python3.12-doc binutils binfmt-support readline-doc Recommended packages: manpages manpages-dev ca-certificates javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules The following NEW packages will be installed: libaec0 libann-cctbx-dev libann-cctbx0 libasan8 libatomic1 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 libcrypt-dev libcurl4t64 libexpat1 libexpat1-dev libgcc-14-dev libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhwasan0 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblsan0 libmmdb2-0 libncursesw6 libnghttp2-14 libnsl2 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libstdc++-14-dev libsz2 libtirpc-common libtirpc3t64 libtsan2 libubsan1 linux-libc-dev media-types netbase python3 python3-dev python3-minimal python3.12 python3.12-dev python3.12-minimal readline-common rpcsvc-proto zlib1g-dev 0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 55.7 MB of archives. After this operation, 373 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5-2+b1 [136 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:11 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get:22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libann-cctbx0 amd64 1.1.2+doc-9+b1 [32.4 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 libann-cctbx-dev amd64 1.1.2+doc-9+b1 [44.6 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libasan8 amd64 14.2.0-8 [2729 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-8 [9280 B] Get:28 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-8 [137 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libitm1 amd64 14.2.0-8 [25.9 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 liblsan0 amd64 14.2.0-8 [1205 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libtsan2 amd64 14.2.0-8 [2461 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libubsan1 amd64 14.2.0-8 [1075 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libhwasan0 amd64 14.2.0-8 [1489 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libquadmath0 amd64 14.2.0-8 [145 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libgcc-14-dev amd64 14.2.0-8 [2674 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libc-dev-bin amd64 2.40-3 [51.8 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 linux-libc-dev all 6.11.7-1 [2454 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 libcrypt-dev amd64 1:4.4.36-5 [118 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 libc6-dev amd64 2.40-3 [1956 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 libstdc++-14-dev amd64 14.2.0-8 [2369 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-3.2 [10.6 MB] Get:43 http://deb.debian.org/debian trixie/main amd64 libboost-python1.83.0 amd64 1.83.0-3.2 [306 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.7-3 [2153 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.7-3 [5124 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.6-1 [9952 B] Get:49 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.6-1 [26.1 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libboost-python1.83-dev amd64 1.83.0-3.2 [327 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 libboost-python-dev amd64 1.83.0.2+b2 [3892 B] Get:56 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:66 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 libcbf1t64 amd64 0.9.7+dfsg1-4+b1 [364 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 libccp4-data all 8.0.0-4 [62.7 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libccp4c0t64 amd64 8.0.0-4 [89.9 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 libmmdb2-0 amd64 2.0.22-1+b2 [342 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libccp4f0t64 amd64 8.0.0-4 [208 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 libccp4-dev amd64 8.0.0-4 [42.9 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 libcctbx0 amd64 2024.8+ds2+~3.21.1+ds1-3 [2352 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 libcctbx-dev amd64 2024.8+ds2+~3.21.1+ds1-3 [1160 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.7 MB in 0s (122 MB/s) Selecting previously unselected package libpython3.12-minimal:amd64. 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Unpacking libcctbx-dev (2024.8+ds2+~3.21.1+ds1-3) ... Setting up media-types (10.1.0) ... Setting up libboost-python1.83.0 (1.83.0-3.2) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libmmdb2-0:amd64 (2.0.22-1+b2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up linux-libc-dev (6.11.7-1) ... Setting up libccp4-data (8.0.0-4) ... Setting up libgomp1:amd64 (14.2.0-8) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up rpcsvc-proto (1.4.3-1) ... Setting up libann-cctbx0 (1.1.2+doc-9+b1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libquadmath0:amd64 (14.2.0-8) ... Setting up libatomic1:amd64 (14.2.0-8) ... Setting up libncursesw6:amd64 (6.5-2+b1) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up libubsan1:amd64 (14.2.0-8) ... Setting up libhwasan0:amd64 (14.2.0-8) ... Setting up libccp4c0t64:amd64 (8.0.0-4) ... Setting up libcrypt-dev:amd64 (1:4.4.36-5) ... Setting up libasan8:amd64 (14.2.0-8) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtsan2:amd64 (14.2.0-8) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libc-dev-bin (2.40-3) ... Setting up readline-common (8.2-5) ... Setting up liblsan0:amd64 (14.2.0-8) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libitm1:amd64 (14.2.0-8) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libann-cctbx-dev (1.1.2+doc-9+b1) ... Setting up libccp4f0t64:amd64 (8.0.0-4) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up libc6-dev:amd64 (2.40-3) ... Setting up libgcc-14-dev:amd64 (14.2.0-8) ... Setting up libstdc++-14-dev:amd64 (14.2.0-8) ... Setting up libboost1.83-dev:amd64 (1.83.0-3.2) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libccp4-dev:amd64 (8.0.0-4) ... Setting up libexpat1-dev:amd64 (2.6.4-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libcbf1t64:amd64 (0.9.7+dfsg1-4+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up libpython3.12t64:amd64 (3.12.7-3) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up libcctbx0 (2024.8+ds2+~3.21.1+ds1-3) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:amd64 (3.12.7-3) ... Setting up python3.12-dev (3.12.7-3) ... Setting up libpython3-dev:amd64 (3.12.6-1) ... Setting up python3-dev (3.12.6-1) ... Setting up libboost-python1.83-dev (1.83.0-3.2) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up libcctbx-dev (2024.8+ds2+~3.21.1+ds1-3) ... Processing triggers for libc-bin (2.40-3) ... 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', '-y', 'install', 'libcctbx-dev'] 0m11.8s INFO: Running scripts post_install 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_install_exceptions'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_install_exceptions'] 0m11.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m12.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m12.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpu_mcuw_2 to sid 0m12.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m12.5s INFO: Running scripts pre_distupgrade 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', 'update'] 0m14.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7335 kB] Fetched 17.6 MB in 2s (10.7 MB/s) Reading package lists... 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', 'update'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', '-yf', 'dist-upgrade'] 0m19.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg6.0t64 libboost-python1.83-dev libboost-python1.83.0 libboost1.83-dev libcctbx-dev libcctbx0 libpcre2-8-0 libpython3-dev libpython3-stdlib libsystemd0 libudev1 linux-libc-dev login.defs passwd python3 python3-dev python3-minimal 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 22.1 MB of archives. After this operation, 1047 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 257~rc2-3 [447 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 257~rc2-3 [147 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.13 [1104 kB] Get:4 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.13 [1392 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.12.7-1 [9976 B] Get:6 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.12.7-1 [26.1 kB] Get:7 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get:8 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get:10 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.44-4 [275 kB] Get:11 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.16.0-5 [185 kB] Get:12 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.16.0-5 [1232 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libboost-python1.83-dev amd64 1.83.0-3.2+b1 [328 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-3.2+b1 [10.6 MB] Get:15 http://deb.debian.org/debian sid/main amd64 libboost-python1.83.0 amd64 1.83.0-3.2+b1 [320 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libcctbx-dev amd64 2024.10+ds2+~3.22.1+ds1-4 [1161 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libcctbx0 amd64 2024.10+ds2+~3.22.1+ds1-4 [2345 kB] Get:18 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.11.9-1 [2459 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.1 MB in 1s (16.6 MB/s) (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29039 files and directories currently installed.) Preparing to unpack .../python3_3.12.7-1_amd64.deb ... Unpacking python3 (3.12.7-1) over (3.12.6-1) ... Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-1) ... Preparing to unpack .../libpcre2-8-0_10.44-4_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.44-4) over (10.42-4+b2) ... 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Installing new version of config file /etc/login.defs ... Setting up linux-libc-dev (6.11.9-1) ... Setting up passwd (1:4.16.0-5) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up libcctbx0 (2024.10+ds2+~3.22.1+ds1-4) ... Setting up python3 (3.12.7-1) ... Setting up python3-dev (3.12.7-1) ... Setting up libboost-python1.83-dev (1.83.0-3.2+b1) ... Setting up libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4) ... Processing triggers for libc-bin (2.40-3) ... 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', '-yf', 'dist-upgrade'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m20.3s DUMP: a6bb0ab3d08215369a0c45aae52cccdf - 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'show', '--no-all-versions', 'libcctbx-dev'] 0m20.5s DUMP: Package: libcctbx-dev Source: cctbx Version: 2024.10+ds2+~3.22.1+ds1-4 Installed-Size: 8605 Maintainer: Debian Science Maintainers Architecture: amd64 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2024.10+ds2+~3.22.1+ds1-4) Description-en: Computational Crystallography Toolbox - headers Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide everythings needed to link against the cctbx libraries. Description-md5: 80927143262a36c2492844dcd04ad8bd Homepage: https://github.com/cctbx/cctbx_project Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: devel Priority: optional Filename: pool/main/c/cctbx/libcctbx-dev_2024.10+ds2+~3.22.1+ds1-4_amd64.deb Size: 1160556 MD5sum: e95e49cf89048f0b23023af056918b78 SHA256: 0ff69405ba44ecf318e3a229a82d22a7a587081e2879e2d2696b14bc7bcb3664 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'show', '--no-all-versions', 'libcctbx-dev'] 0m20.5s INFO: apt-cache knows about the following packages: libcctbx-dev 0m20.5s INFO: Running scripts pre_install 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_database-server'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_database-server'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_exceptions'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_exceptions'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_extras'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_extras'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy'] 0m20.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy', 'libcctbx-dev'] 0m20.5s DUMP: libcctbx-dev: Installed: 2024.10+ds2+~3.22.1+ds1-4 Candidate: 2024.10+ds2+~3.22.1+ds1-4 Version table: *** 2024.10+ds2+~3.22.1+ds1-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy', 'libcctbx-dev'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', '-y', 'install', 'libcctbx-dev'] 0m20.8s DUMP: Reading package lists... Building dependency tree... Reading state information... libcctbx-dev is already the newest version (2024.10+ds2+~3.22.1+ds1-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', '-y', 'install', 'libcctbx-dev'] 0m20.8s INFO: Running scripts post_install 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_install_exceptions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_install_exceptions'] 0m20.8s INFO: Running scripts post_distupgrade 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m21.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m21.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m22.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m22.6s INFO: Running scripts pre_install 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_database-server'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_database-server'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_exceptions'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_exceptions'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_extras'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_extras'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy'] 0m22.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy', 'libcctbx-dev'] 0m22.7s DUMP: libcctbx-dev: Installed: 2024.10+ds2+~3.22.1+ds1-4 Candidate: 2024.10+ds2+~3.22.1+ds1-4 Version table: *** 2024.10+ds2+~3.22.1+ds1-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-cache', 'policy', 'libcctbx-dev'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', '-y', 'install', 'libcctbx-dev=2024.10+ds2+~3.22.1+ds1-4'] 0m22.9s DUMP: Reading package lists... Building dependency tree... Reading state information... libcctbx-dev is already the newest version (2024.10+ds2+~3.22.1+ds1-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', '-y', 'install', 'libcctbx-dev=2024.10+ds2+~3.22.1+ds1-4'] 0m22.9s INFO: Running scripts post_install 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_install_exceptions'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_install_exceptions'] 0m23.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m23.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m24.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', '-ac', '--ignore-obsolete'] 0m26.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', '-ac', '--ignore-obsolete'] 0m26.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.1s DUMP: 0.15.6 0m26.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.1s INFO: Running adequate version 0.15.6 now. 0m26.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'libcctbx-dev'] 0m26.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'libcctbx-dev'] 0m26.2s INFO: Running scripts pre_remove 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_exceptions'] 0m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/pre_remove_exceptions'] 0m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m29.9s DUMP: install ok installed apt apt 2.9.13 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-11 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-8 install ok installed gpgv gpgv 2.2.45-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libann-cctbx-dev libann-cctbx-dev 1.1.2+doc-9+b1 install ok installed libann-cctbx0 libann-cctbx0 1.1.2+doc-9+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.13 install ok installed libasan8:amd64 libasan8 14.2.0-8 install ok installed libatomic1:amd64 libatomic1 14.2.0-8 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libblkid1:amd64 libblkid1 2.40.2-11 install ok installed libboost-python-dev libboost-python-dev 1.83.0.2+b2 install ok installed libboost-python1.83-dev libboost-python1.83-dev 1.83.0-3.2+b1 install ok installed libboost-python1.83.0 libboost-python1.83.0 1.83.0-3.2+b1 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-3.2+b1 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc-dev-bin libc-dev-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libc6-dev:amd64 libc6-dev 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-3+b1 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcbf1t64:amd64 libcbf1t64 0.9.7+dfsg1-4+b1 install ok installed libccp4-data libccp4-data 8.0.0-4 install ok installed libccp4-dev:amd64 libccp4-dev 8.0.0-4 install ok installed libccp4c0t64:amd64 libccp4c0t64 8.0.0-4 install ok installed libccp4f0t64:amd64 libccp4f0t64 8.0.0-4 install ok installed libcctbx-dev libcctbx-dev 2024.10+ds2+~3.22.1+ds1-4 install ok installed libcctbx0 libcctbx0 2024.10+ds2+~3.22.1+ds1-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libcurl4t64:amd64 libcurl4t64 8.11.0-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.273 install ok installed libexpat1:amd64 libexpat1 2.6.4-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.6.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-8 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-8 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-8 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-3 install ok installed libhdf5-103-1t64:amd64 libhdf5-103-1t64 1.10.10+repack-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libhwasan0:amd64 libhwasan0 14.2.0-8 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libitm1:amd64 libitm1 14.2.0-8 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.4.7-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-3 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.18+dfsg-3+b1 install ok installed liblsan0:amd64 liblsan0 14.2.0-8 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmmdb2-0:amd64 libmmdb2-0 2.0.22-1+b2 install ok installed libmount1:amd64 libmount1 2.40.2-11 install ok installed libncursesw6:amd64 libncursesw6 6.5-2+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-4 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.12.7-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.7-1 install ok installed libpython3.12-dev:amd64 libpython3.12-dev 3.12.7-3 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.7-3 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.7-3 install ok installed libpython3.12t64:amd64 libpython3.12t64 3.12.7-3 install ok installed libquadmath0:amd64 libquadmath0 14.2.0-8 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-8 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-8 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b3 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-11 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-8 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-8 install ok installed libsystemd0:amd64 libsystemd0 257~rc2-3 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3+b1 install ok installed libtsan2:amd64 libtsan2 14.2.0-8 install ok installed libubsan1:amd64 libubsan1 14.2.0-8 install ok installed libudev1:amd64 libudev1 257~rc2-3 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-11 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed linux-libc-dev linux-libc-dev 6.11.9-1 install ok installed login login 1:4.16.0-2+really2.40.2-11 install ok installed login.defs login.defs 1:4.16.0-5 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40.2-11 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed netbase netbase 6.4 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-5 install ok installed perl-base perl-base 5.40.0-7 install ok installed python3 python3 3.12.7-1 install ok installed python3-dev python3-dev 3.12.7-1 install ok installed python3-minimal python3-minimal 3.12.7-1 install ok installed python3.12 python3.12 3.12.7-3 install ok installed python3.12-dev python3.12-dev 3.12.7-3 install ok installed python3.12-minimal python3.12-minimal 3.12.7-3 install ok installed readline-common readline-common 8.2-5 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-11 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 0m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', 'remove', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libasan8:amd64', 'libatomic1:amd64', 'libboost-python-dev', 'libboost-python1.83-dev', 'libboost-python1.83.0', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcbf1t64:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0t64:amd64', 'libccp4f0t64:amd64', 'libcctbx0', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhwasan0:amd64', 'libitm1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmmdb2-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'python3', 'python3-dev', 'python3-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'libcctbx-dev'] 0m31.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libaec0 libann-cctbx-dev libann-cctbx0 libasan8 libatomic1 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 libcrypt-dev libcurl4t64 libexpat1 libexpat1-dev libgcc-14-dev libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhwasan0 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblsan0 libmmdb2-0 libncursesw6 libnghttp2-14 libnsl2 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libstdc++-14-dev libsz2 libtirpc-common libtirpc3t64 libtsan2 libubsan1 linux-libc-dev media-types netbase python3 python3-dev python3-minimal python3.12 python3.12-dev python3.12-minimal readline-common rpcsvc-proto zlib1g-dev 0 upgraded, 0 newly installed, 75 to remove and 0 not upgraded. After this operation, 374 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29048 files and directories currently installed.) Removing libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4) ... Removing libcctbx0 (2024.10+ds2+~3.22.1+ds1-4) ... Removing libcbf1t64:amd64 (0.9.7+dfsg1-4+b1) ... Removing libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Removing libsz2:amd64 (1.1.3-1+b1) ... Removing libaec0:amd64 (1.1.3-1+b1) ... Removing libann-cctbx-dev (1.1.2+doc-9+b1) ... Removing libann-cctbx0 (1.1.2+doc-9+b1) ... Removing libboost-python-dev (1.83.0.2+b2) ... Removing libboost-python1.83-dev (1.83.0-3.2+b1) ... Removing libboost1.83-dev:amd64 (1.83.0-3.2+b1) ... Removing libstdc++-14-dev:amd64 (14.2.0-8) ... Removing libgcc-14-dev:amd64 (14.2.0-8) ... Removing libasan8:amd64 (14.2.0-8) ... Removing libatomic1:amd64 (14.2.0-8) ... Removing libboost-python1.83.0 (1.83.0-3.2+b1) ... Removing libcurl4t64:amd64 (8.11.0-1) ... Removing libbrotli1:amd64 (1.1.0-2+b6) ... Removing python3-dev (3.12.7-1) ... Removing python3.12-dev (3.12.7-3) ... Removing libpython3-dev:amd64 (3.12.7-1) ... Removing libpython3.12-dev:amd64 (3.12.7-3) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Removing libexpat1-dev:amd64 (2.6.4-1) ... Removing libc6-dev:amd64 (2.40-3) ... Removing libc-dev-bin (2.40-3) ... Removing libccp4-dev:amd64 (8.0.0-4) ... Removing libccp4f0t64:amd64 (8.0.0-4) ... Removing libccp4c0t64:amd64 (8.0.0-4) ... Removing libccp4-data (8.0.0-4) ... Removing libcrypt-dev:amd64 (1:4.4.36-5) ... Removing python3 (3.12.7-1) ... Removing python3.12 (3.12.7-3) ... Removing python3-minimal (3.12.7-1) ... Removing python3.12-minimal (3.12.7-3) ... Removing libpython3.12t64:amd64 (3.12.7-3) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing libgfortran5:amd64 (14.2.0-8) ... Removing libgomp1:amd64 (14.2.0-8) ... Removing libpython3-stdlib:amd64 (3.12.7-1) ... Removing libpython3.12-stdlib:amd64 (3.12.7-3) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-3+b3) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-3) ... Removing libhwasan0:amd64 (14.2.0-8) ... Removing libitm1:amd64 (14.2.0-8) ... Removing libjs-sphinxdoc (7.4.7-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libkrb5-3:amd64 (1.21.3-3) ... Removing libk5crypto3:amd64 (1.21.3-3) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-3) ... Removing libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Removing liblsan0:amd64 (14.2.0-8) ... Removing libmmdb2-0:amd64 (2.0.22-1+b2) ... Removing libncursesw6:amd64 (6.5-2+b1) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libpython3.12-minimal:amd64 (3.12.7-3) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (14.2.0-8) ... Removing libreadline8t64:amd64 (8.2-5) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtirpc-common (1.3.4+ds-1.3) ... Removing libtsan2:amd64 (14.2.0-8) ... Removing libubsan1:amd64 (14.2.0-8) ... Removing linux-libc-dev (6.11.9-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-5) ... Removing rpcsvc-proto (1.4.3-1) ... Processing triggers for libc-bin (2.40-3) ... 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', 'remove', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libasan8:amd64', 'libatomic1:amd64', 'libboost-python-dev', 'libboost-python1.83-dev', 'libboost-python1.83.0', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcbf1t64:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0t64:amd64', 'libccp4f0t64:amd64', 'libcctbx0', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhwasan0:amd64', 'libitm1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmmdb2-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'python3', 'python3-dev', 'python3-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'libcctbx-dev'] 0m31.2s INFO: Running scripts post_remove 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_remove_exceptions'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_remove_exceptions'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg', '--purge', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libasan8:amd64', 'libatomic1:amd64', 'libboost-python-dev', 'libboost-python1.83-dev', 'libboost-python1.83.0', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcbf1t64:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0t64:amd64', 'libccp4f0t64:amd64', 'libcctbx0', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhwasan0:amd64', 'libitm1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmmdb2-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'python3', 'python3-dev', 'python3-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 0m31.2s DUMP: dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libann-cctbx-dev which isn't installed dpkg: warning: ignoring request to remove libann-cctbx0 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libboost-python-dev which isn't installed dpkg: warning: ignoring request to remove libboost-python1.83-dev which isn't installed dpkg: warning: ignoring request to remove libboost-python1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcbf1t64 which isn't installed dpkg: warning: ignoring request to remove libccp4-data which isn't installed dpkg: warning: ignoring request to remove libccp4-dev which isn't installed dpkg: warning: ignoring request to remove libccp4c0t64 which isn't installed dpkg: warning: ignoring request to remove libccp4f0t64 which isn't installed dpkg: warning: ignoring request to remove libcctbx0 which isn't installed (Reading database ... 5162 files and directories currently installed.) Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-5) ... dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-3) ... dpkg: warning: ignoring request to remove libhdf5-103-1t64 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmmdb2-0 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.12-dev which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.7-3) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.12t64 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-5) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.3) ... Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for python3 (3.12.7-1) ... dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.12 which isn't installed dpkg: warning: ignoring request to remove python3.12-dev which isn't installed Purging configuration files for python3.12-minimal (3.12.7-3) ... Purging configuration files for readline-common (8.2-5) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg', '--purge', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libasan8:amd64', 'libatomic1:amd64', 'libboost-python-dev', 'libboost-python1.83-dev', 'libboost-python1.83.0', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcbf1t64:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0t64:amd64', 'libccp4f0t64:amd64', 'libcctbx0', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhwasan0:amd64', 'libitm1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmmdb2-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'python3', 'python3-dev', 'python3-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg', '--purge', 'libcctbx-dev'] 0m31.3s DUMP: dpkg: warning: ignoring request to remove libcctbx-dev which isn't installed 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg', '--purge', 'libcctbx-dev'] 0m31.3s INFO: Running scripts post_purge 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_purge_exceptions'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_purge_exceptions'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg', '--purge', '--pending'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg', '--purge', '--pending'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg', '--remove', '--pending'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg', '--remove', '--pending'] 0m31.3s INFO: Running scripts post_test 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_test_exceptions'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'tmp/scripts/post_test_exceptions'] 0m31.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m31.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg-divert', '--list'] 0m31.6s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'dpkg-divert', '--list'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', 'clean'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2', 'apt-get', 'clean'] 0m31.6s DEBUG: Recording chroot state 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/shm'] 0m32.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/shm'] 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/console'] 0m32.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/console'] 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/ptmx'] 0m32.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/ptmx'] 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/pts'] 0m32.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/dev/pts'] 0m32.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/proc'] 0m32.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2/proc'] 0m32.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m32.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpu_mcuw_2'] 0m32.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpu_mcuw_2 0m32.3s INFO: PASS: Upgrading between Debian distributions. 0m32.3s INFO: PASS: All tests. 0m32.3s INFO: piuparts run ends. ret=0 End: 2024-11-20 22:21:08 GMT