Start: 2026-10-16 22:08:07 GMT [testing] Package: libgatbcore-dev Source: gatb-core Version: 1.4.2+dfsg-14 Installed-Size: 76425 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libgatbcore3 (= 1.4.2+dfsg-14) Description: development library of the Genome Analysis Toolbox Multi-Arch: same Homepage: https://github.com/GATB/gatb-core Description-md5: 31f368a3a87873b818271b935c41d684 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/g/gatb-core/libgatbcore-dev_1.4.2+dfsg-14_amd64.deb Size: 4297592 MD5sum: fe60bc1f7e32d677ac2fdb4473f2dc0d SHA256: 88ba981bbfcfe34e0d1f785f072936cf7b38f68eeb63007e02ca72c5851844f0 [sid] Package: libgatbcore-dev Source: gatb-core Version: 1.4.2+dfsg-14 Installed-Size: 76425 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libgatbcore3 (= 1.4.2+dfsg-14) Description: development library of the Genome Analysis Toolbox Multi-Arch: same Homepage: https://github.com/GATB/gatb-core Description-md5: 31f368a3a87873b818271b935c41d684 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/g/gatb-core/libgatbcore-dev_1.4.2+dfsg-14_amd64.deb Size: 4297592 MD5sum: fe60bc1f7e32d677ac2fdb4473f2dc0d SHA256: 88ba981bbfcfe34e0d1f785f072936cf7b38f68eeb63007e02ca72c5851844f0 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libgatbcore-dev=1.4.2+dfsg-14 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libgatbcore-dev=1.4.2+dfsg-14 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.111+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.111-1 (2026-09-28) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpz3psrgla 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpz3psrgla 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/proc'] 0m0.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/proc'] 0m0.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/pts'] 0m0.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/pts'] 0m0.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/ptmx'] 0m0.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/ptmx'] 0m0.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/10', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/console'] 0m0.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/10', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/console'] 0m0.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/shm'] 0m0.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/shm'] 0m0.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.8s DEBUG: Created policy-rc.d and chmodded it. 0m0.8s DEBUG: Created resolv.conf. 0m0.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpz3psrgla/tmp/scripts/ 0m0.8s INFO: Running scripts post_chroot_unpack 0m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', 'update'] 0m3.1s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6630 kB] Fetched 16.8 MB in 1s (14.6 MB/s) Reading package lists... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: findutils libc-bin libc-gconv-modules-extra libc6 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4378 kB of archives. After this operation, 8192 B of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 findutils amd64 4.11.0-3 [788 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libc-bin amd64 2.43-7 [621 kB] Preconfiguring packages ... Fetched 4378 kB in 0s (19.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../findutils_4.11.0-3_amd64.deb ... Unpacking findutils (4.11.0-3) over (4.11.0-2) ... Setting up findutils (4.11.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../libc-gconv-modules-extra_2.43-7_amd64.deb ... Unpacking libc-gconv-modules-extra:amd64 (2.43-7) over (2.43-6) ... Setting up libc-gconv-modules-extra:amd64 (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../libc6_2.43-7_amd64.deb ... Unpacking libc6:amd64 (2.43-7) over (2.43-6) ... Setting up libc6:amd64 (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../libc-bin_2.43-7_amd64.deb ... Unpacking libc-bin (2.43-7) over (2.43-6) ... Setting up libc-bin (2.43-7) ... 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.5s DUMP: ddb281e2acb00cc9f04a5e9842c4e4f8 - 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.5s INFO: Running scripts post_setup 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_dummy_users'] 0m7.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_dummy_users'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.2-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.2-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m7.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m7.7s INFO: Running scripts is_testable 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/is_testable_uninstallable'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/is_testable_uninstallable'] 0m7.8s INFO: Running scripts pre_test 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_test_exceptions'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_test_exceptions'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_test_root_password'] 0m7.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_test_root_password'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'show', '--no-all-versions', 'libgatbcore-dev'] 0m8.1s DUMP: Package: libgatbcore-dev Source: gatb-core Version: 1.4.2+dfsg-14 Installed-Size: 76425 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libgatbcore3 (= 1.4.2+dfsg-14) Description-en: development library of the Genome Analysis Toolbox The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ . This package contains the static library and the header files of the gatb-core library. Description-md5: 31f368a3a87873b818271b935c41d684 Multi-Arch: same Homepage: https://github.com/GATB/gatb-core Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/g/gatb-core/libgatbcore-dev_1.4.2+dfsg-14_amd64.deb Size: 4297592 MD5sum: fe60bc1f7e32d677ac2fdb4473f2dc0d SHA256: 88ba981bbfcfe34e0d1f785f072936cf7b38f68eeb63007e02ca72c5851844f0 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'show', '--no-all-versions', 'libgatbcore-dev'] 0m8.1s INFO: apt-cache knows about the following packages: libgatbcore-dev 0m8.1s INFO: Running scripts pre_install 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_database-server'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_database-server'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_exceptions'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_exceptions'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_extras'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_extras'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy'] 0m8.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy', 'libgatbcore-dev'] 0m8.3s DUMP: libgatbcore-dev: Installed: (none) Candidate: 1.4.2+dfsg-14 Version table: 1.4.2+dfsg-14 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy', 'libgatbcore-dev'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', '-y', 'install', 'libgatbcore-dev'] 0m14.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: libgatbcore3 The following NEW packages will be installed: libgatbcore-dev libgatbcore3 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 6217 kB of archives. After this operation, 91.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libgatbcore3 amd64 1.4.2+dfsg-14 [1919 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libgatbcore-dev amd64 1.4.2+dfsg-14 [4298 kB] Fetched 6217 kB in 4s (1530 kB/s) Selecting previously unselected package libgatbcore3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4950 files and directories currently installed.) Preparing to unpack .../libgatbcore3_1.4.2+dfsg-14_amd64.deb ... Unpacking libgatbcore3:amd64 (1.4.2+dfsg-14) ... Selecting previously unselected package libgatbcore-dev:amd64. Preparing to unpack .../libgatbcore-dev_1.4.2+dfsg-14_amd64.deb ... Unpacking libgatbcore-dev:amd64 (1.4.2+dfsg-14) ... Setting up libgatbcore3:amd64 (1.4.2+dfsg-14) ... Setting up libgatbcore-dev:amd64 (1.4.2+dfsg-14) ... Processing triggers for libc-bin (2.43-7) ... 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', '-y', 'install', 'libgatbcore-dev'] 0m14.4s INFO: Running scripts post_install 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_install_exceptions'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_install_exceptions'] 0m14.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m14.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m14.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpz3psrgla to sid 0m14.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m14.8s INFO: Running scripts pre_distupgrade 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', 'update'] 0m18.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7746 kB] Fetched 18.7 MB in 3s (6141 kB/s) Reading package lists... 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', 'update'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', '-yf', 'dist-upgrade'] 0m20.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libaudit-common libaudit1 login.defs passwd 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1595 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:3 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.20.3-1 [224 kB] Get:4 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.20.3-1 [1298 kB] Fetched 1595 kB in 0s (29.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5279 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.2.1-1_all.deb ... Unpacking libaudit-common (1:4.2.1-1) over (1:4.1.2-1) ... Setting up libaudit-common (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5279 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.2.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.2.1-1) over (1:4.1.2-1+b2) ... Setting up libaudit1:amd64 (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5278 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.20.3-1_all.deb ... Unpacking login.defs (1:4.20.3-1) over (1:4.20.2-2) ... Preparing to unpack .../passwd_1%3a4.20.3-1_amd64.deb ... Unpacking passwd (1:4.20.3-1) over (1:4.20.2-2) ... Setting up login.defs (1:4.20.3-1) ... Setting up passwd (1:4.20.3-1) ... Processing triggers for libc-bin (2.43-7) ... 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', '-yf', 'dist-upgrade'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.0s DUMP: 025430869d62308f562dfb304c3c3b2b - 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'show', '--no-all-versions', 'libgatbcore-dev'] 0m21.4s DUMP: Package: libgatbcore-dev Source: gatb-core Version: 1.4.2+dfsg-14 Installed-Size: 76425 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libgatbcore3 (= 1.4.2+dfsg-14) Description-en: development library of the Genome Analysis Toolbox The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ . This package contains the static library and the header files of the gatb-core library. Description-md5: 31f368a3a87873b818271b935c41d684 Multi-Arch: same Homepage: https://github.com/GATB/gatb-core Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/g/gatb-core/libgatbcore-dev_1.4.2+dfsg-14_amd64.deb Size: 4297592 MD5sum: fe60bc1f7e32d677ac2fdb4473f2dc0d SHA256: 88ba981bbfcfe34e0d1f785f072936cf7b38f68eeb63007e02ca72c5851844f0 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'show', '--no-all-versions', 'libgatbcore-dev'] 0m21.4s INFO: apt-cache knows about the following packages: libgatbcore-dev 0m21.4s INFO: Running scripts pre_install 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_database-server'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_database-server'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_exceptions'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_extras'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_extras'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy'] 0m21.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy', 'libgatbcore-dev'] 0m21.5s DUMP: libgatbcore-dev: Installed: 1.4.2+dfsg-14 Candidate: 1.4.2+dfsg-14 Version table: *** 1.4.2+dfsg-14 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy', 'libgatbcore-dev'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', '-y', 'install', 'libgatbcore-dev'] 0m22.3s DUMP: Reading package lists... Building dependency tree... Reading state information... libgatbcore-dev is already the newest version (1.4.2+dfsg-14). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', '-y', 'install', 'libgatbcore-dev'] 0m22.3s INFO: Running scripts post_install 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_install_exceptions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_install_exceptions'] 0m22.3s INFO: Running scripts post_distupgrade 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m22.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m22.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m23.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m23.0s INFO: Running scripts pre_install 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_database-server'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_database-server'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_exceptions'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_exceptions'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_extras'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_extras'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy'] 0m23.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy', 'libgatbcore-dev'] 0m23.2s DUMP: libgatbcore-dev: Installed: 1.4.2+dfsg-14 Candidate: 1.4.2+dfsg-14 Version table: *** 1.4.2+dfsg-14 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-cache', 'policy', 'libgatbcore-dev'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', '-y', 'install', 'libgatbcore-dev=1.4.2+dfsg-14'] 0m24.4s DUMP: Reading package lists... Building dependency tree... Reading state information... libgatbcore-dev is already the newest version (1.4.2+dfsg-14). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', '-y', 'install', 'libgatbcore-dev=1.4.2+dfsg-14'] 0m24.4s INFO: Running scripts post_install 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_install_exceptions'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_install_exceptions'] 0m24.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m24.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m24.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', '-ac', '--ignore-obsolete'] 0m25.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', '-ac', '--ignore-obsolete'] 0m25.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.9s DUMP: 0.17.5+b5 0m25.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.9s INFO: Running adequate version 0.17.5+b5 now. 0m25.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'libgatbcore-dev'] 0m25.9s DUMP: libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5_libinit_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_NATIVE_UINT16_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5_libterm_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_NATIVE_INT_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_C_S1_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_NATIVE_UINT64_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_NATIVE_UINT8_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_NATIVE_UINT32_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5P_CLS_DATASET_CREATE_ID_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dread libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Screate_simple libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Fcreate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tset_precision libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzprintf libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tcreate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pset_chunk libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Sselect_hyperslab libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzerror libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dwrite libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzopen libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dset_extent libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzread libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Awrite libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Fclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pset_layout libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzflush libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Aexists libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tinsert libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Gclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => inflate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Aopen libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dget_space libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Lexists libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Gcreate2 libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Aget_space libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tcopy libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => inflateInit_ libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Sclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => deflateInit_ libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dopen2 libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pset_shuffle libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dvlen_reclaim libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzwrite libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Aread libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5open libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => deflate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Sget_simple_extent_dims libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Gopen2 libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dcreate2 libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pset_deflate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => deflateEnd libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pcreate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzbuffer libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzseek libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Fopen libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Adelete libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Aclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => inflateEnd libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzrewind libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tset_size libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Acreate2 libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gztell 0m25.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'libgatbcore-dev'] 0m25.9s ERROR: WARN: Inadequate results from running adequate! libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5_libinit_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_NATIVE_UINT16_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5_libterm_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_NATIVE_INT_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_C_S1_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_NATIVE_UINT64_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_NATIVE_UINT8_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5T_NATIVE_UINT32_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5P_CLS_DATASET_CREATE_ID_g libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dread libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Screate_simple libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Fcreate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tset_precision libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzprintf libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tcreate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pset_chunk libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Sselect_hyperslab libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzerror libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dwrite libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzopen libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dset_extent libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzread libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Awrite libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Fclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pset_layout libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzflush libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Aexists libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tinsert libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Gclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => inflate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Aopen libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dget_space libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Lexists libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Gcreate2 libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Aget_space libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tcopy libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => inflateInit_ libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Sclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => deflateInit_ libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dopen2 libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pset_shuffle libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dvlen_reclaim libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzwrite libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Aread libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5open libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => deflate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Sget_simple_extent_dims libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Gopen2 libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Dcreate2 libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pset_deflate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => deflateEnd libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Pcreate libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzbuffer libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzseek libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Fopen libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Adelete libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Aclose libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => inflateEnd libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gzrewind libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Tset_size libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => H5Acreate2 libgatbcore-dev:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so => gztell 0m25.9s ERROR: WARN: Running adequate resulted in inadequate tags found: undefined-symbol 0m25.9s INFO: Running scripts pre_remove 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_exceptions'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/pre_remove_exceptions'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.6s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgatbcore-dev:amd64 libgatbcore-dev 1.4.2+dfsg-14 install ok installed libgatbcore3:amd64 libgatbcore3 1.4.2+dfsg-14 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', 'remove', '--allow-remove-essential', 'libgatbcore-dev:amd64', 'libgatbcore3:amd64'] 0m28.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: libgatbcore-dev libgatbcore3 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. After this operation, 91.7 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5278 files and directories currently installed.) Removing libgatbcore-dev:amd64 (1.4.2+dfsg-14) ... Removing libgatbcore3:amd64 (1.4.2+dfsg-14) ... Processing triggers for libc-bin (2.43-7) ... 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', 'remove', '--allow-remove-essential', 'libgatbcore-dev:amd64', 'libgatbcore3:amd64'] 0m28.0s INFO: Running scripts post_remove 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_remove_exceptions'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_remove_exceptions'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg', '--purge', 'libgatbcore-dev:amd64', 'libgatbcore3:amd64'] 0m28.0s DUMP: dpkg: warning: ignoring request to remove libgatbcore-dev which is not installed dpkg: warning: ignoring request to remove libgatbcore3 which is not installed 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg', '--purge', 'libgatbcore-dev:amd64', 'libgatbcore3:amd64'] 0m28.0s INFO: Running scripts post_purge 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_purge_exceptions'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_purge_exceptions'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg', '--purge', '--pending'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg', '--purge', '--pending'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg', '--remove', '--pending'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg', '--remove', '--pending'] 0m28.0s INFO: Running scripts post_test 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_test_exceptions'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'tmp/scripts/post_test_exceptions'] 0m28.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m28.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg-divert', '--list'] 0m28.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'dpkg-divert', '--list'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', 'clean'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz3psrgla', 'apt-get', 'clean'] 0m28.4s DEBUG: Recording chroot state 0m29.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/shm'] 0m29.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/shm'] 0m29.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/console'] 0m29.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/console'] 0m29.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/ptmx'] 0m29.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/ptmx'] 0m29.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/pts'] 0m29.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/dev/pts'] 0m29.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/proc'] 0m29.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz3psrgla/proc'] 0m29.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m29.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz3psrgla'] 0m29.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpz3psrgla 0m29.7s INFO: PASS: Upgrading between Debian distributions. 0m29.7s INFO: PASS: All tests. 0m29.7s INFO: piuparts run ends. ret=0 End: 2026-10-16 22:08:37 GMT