Start: 2025-02-24 03:55:43 GMT [testing] Package: libgenomicsdb-java Source: genomicsdb Version: 1.5.4-5 Installed-Size: 493 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-io-java (>= 2.18.0), libgetopt-java, libgoogle-gson-java, libguava-java, libhtsjdk-java (>= 4.1.3), libjson-simple-java, liblog4j2-java (>= 2.19.0), libprotobuf-java, libgenomicsdb-jni (>= 1.5.4-5), libgenomicsdb-jni (<< 1.5.4-5.1~) Description: sparse array storage library for genomics (Java library) Homepage: https://www.genomicsdb.org/ Description-md5: 6a43860137619ae15d009235c0ac2bc5 Section: java Priority: optional Filename: pool/main/g/genomicsdb/libgenomicsdb-java_1.5.4-5_all.deb Size: 409684 MD5sum: 79f3454a1ab48bbe3db49f104386ecb7 SHA256: a9200f66b6e34783a2335fa2f7cff491bcca0f0af1ace367521568ef17172533 [sid] Package: libgenomicsdb-java Source: genomicsdb Version: 1.5.4-5 Installed-Size: 493 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-io-java (>= 2.18.0), libgetopt-java, libgoogle-gson-java, libguava-java, libhtsjdk-java (>= 4.1.3), libjson-simple-java, liblog4j2-java (>= 2.19.0), libprotobuf-java, libgenomicsdb-jni (>= 1.5.4-5), libgenomicsdb-jni (<< 1.5.4-5.1~) Description: sparse array storage library for genomics (Java library) Homepage: https://www.genomicsdb.org/ Description-md5: 6a43860137619ae15d009235c0ac2bc5 Section: java Priority: optional Filename: pool/main/g/genomicsdb/libgenomicsdb-java_1.5.4-5_all.deb Size: 409684 MD5sum: 79f3454a1ab48bbe3db49f104386ecb7 SHA256: a9200f66b6e34783a2335fa2f7cff491bcca0f0af1ace367521568ef17172533 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libgenomicsdb-java=1.5.4-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libgenomicsdb-java=1.5.4-5 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp6g_9ehas 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp6g_9ehas 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp6g_9ehas/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', 'update'] 0m2.2s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [175 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9485 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6359 kB] Fetched 16.0 MB in 1s (15.0 MB/s) Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: libapt-pkg7.0 The following packages will be upgraded: apt bsdutils libblkid1 libc-bin libc6 libmount1 libpcre2-8-0 libselinux1 libsmartcols1 libtinfo6 libuuid1 login login.defs mount ncurses-base ncurses-bin passwd util-linux 18 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After this operation, 3968 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.40.4-4 [106 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 ncurses-bin amd64 6.5+20250216-1 [439 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.40-7 [2815 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.40.4-4 [36.5 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.40.4-4 [169 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.40.4-4 [200 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.40.4-4 [140 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.40.4-4 [1206 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.40.4-4 [156 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libpcre2-8-0 amd64 10.45-1 [298 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libselinux1 amd64 3.8-3 [84.6 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libapt-pkg7.0 amd64 2.9.30 [1104 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 apt amd64 2.9.30 [1440 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.40-7 [631 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 ncurses-base all 6.5+20250216-1 [273 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.40.4-4 [88.7 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libtinfo6 amd64 6.5+20250216-1 [348 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.17.2-5 [186 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.17.2-5 [1234 kB] Preconfiguring packages ... Fetched 11.0 MB in 0s (107 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.4-4_amd64.deb ... Unpacking bsdutils (1:2.40.4-4) over (1:2.40.4-3) ... Setting up bsdutils (1:2.40.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.5+20250216-1_amd64.deb ... Unpacking ncurses-bin (6.5+20250216-1) over (6.5+20250125-2) ... Setting up ncurses-bin (6.5+20250216-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libc6_2.40-7_amd64.deb ... Unpacking libc6:amd64 (2.40-7) over (2.40-6) ... Setting up libc6:amd64 (2.40-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40.4-4_amd64.deb ... Unpacking libuuid1:amd64 (2.40.4-4) over (2.40.4-3) ... Setting up libuuid1:amd64 (2.40.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libblkid1_2.40.4-4_amd64.deb ... Unpacking libblkid1:amd64 (2.40.4-4) over (2.40.4-3) ... Setting up libblkid1:amd64 (2.40.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libmount1_2.40.4-4_amd64.deb ... Unpacking libmount1:amd64 (2.40.4-4) over (2.40.4-3) ... Setting up libmount1:amd64 (2.40.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.4-4_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40.4-4) over (2.40.4-3) ... Setting up libsmartcols1:amd64 (2.40.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.4-4_amd64.deb ... Unpacking util-linux (2.40.4-4) over (2.40.4-3) ... Setting up util-linux (2.40.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../mount_2.40.4-4_amd64.deb ... Unpacking mount (2.40.4-4) over (2.40.4-3) ... Preparing to unpack .../libpcre2-8-0_10.45-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.45-1) over (10.44-5) ... Setting up libpcre2-8-0:amd64 (10.45-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../libselinux1_3.8-3_amd64.deb ... Unpacking libselinux1:amd64 (3.8-3) over (3.7-3.1) ... Setting up libselinux1:amd64 (3.8-3) ... /var/lib/dpkg/info/libselinux1:amd64.postinst: 6: sestatus: not found Selecting previously unselected package libapt-pkg7.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_2.9.30_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (2.9.30) ... Setting up libapt-pkg7.0:amd64 (2.9.30) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5072 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.30_amd64.deb ... Unpacking apt (2.9.30) over (2.9.29) ... Setting up apt (2.9.30) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5072 files and directories currently installed.) Preparing to unpack .../libc-bin_2.40-7_amd64.deb ... Unpacking libc-bin (2.40-7) over (2.40-6) ... Setting up libc-bin (2.40-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5072 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.5+20250216-1_all.deb ... Unpacking ncurses-base (6.5+20250216-1) over (6.5+20250125-2) ... Setting up ncurses-base (6.5+20250216-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5072 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.40.4-4_amd64.deb ... Unpacking login (1:4.16.0-2+really2.40.4-4) over (1:4.16.0-2+really2.40.4-3) ... Preparing to unpack .../libtinfo6_6.5+20250216-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.5+20250216-1) over (6.5+20250125-2) ... Setting up libtinfo6:amd64 (6.5+20250216-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5072 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.17.2-5_all.deb ... Unpacking login.defs (1:4.17.2-5) over (1:4.16.0-7) ... Preparing to unpack .../passwd_1%3a4.17.2-5_amd64.deb ... Unpacking passwd (1:4.17.2-5) over (1:4.16.0-7) ... Setting up login.defs (1:4.17.2-5) ... Setting up passwd (1:4.17.2-5) ... Setting up mount (2.40.4-4) ... Setting up login (1:4.16.0-2+really2.40.4-4) ... Processing triggers for libc-bin (2.40-7) ... 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.5s DUMP: c05dede9a6f1fa814be413dab41ce539 - 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.5s INFO: Running scripts post_setup 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_dummy_users'] 0m8.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_dummy_users'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_forbid_home'] 0m8.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_forbid_home'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_minimize'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_minimize'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_zz_backports'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_setup_zz_backports'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DUMP: install ok installed apt apt 2.9.30 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.4-4 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.15 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-16 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.29 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.30 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblkid1:amd64 libblkid1 2.40.4-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-7 install ok installed libc6:amd64 libc6 2.40-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-16 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.8-3 install ok installed libsemanage-common libsemanage-common 3.7-2.1 install ok installed libsemanage2:amd64 libsemanage2 3.7-2.1+b1 install ok installed libsepol2:amd64 libsepol2 3.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-4 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-16 install ok installed libsystemd0:amd64 libsystemd0 257.3-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-1 install ok installed libudev1:amd64 libudev1 257.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.4-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-4 install ok installed login.defs login.defs 1:4.17.2-5 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-4 install ok installed ncurses-base ncurses-base 6.5+20250216-1 install ok installed ncurses-bin ncurses-bin 6.5+20250216-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.2-5 install ok installed perl-base perl-base 5.40.1-2 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m8.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m8.6s INFO: Running scripts is_testable 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/is_testable_uninstallable'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/is_testable_uninstallable'] 0m8.6s INFO: Running scripts pre_test 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_test_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_test_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_test_root_password'] 0m8.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_test_root_password'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'show', '--no-all-versions', 'libgenomicsdb-java'] 0m9.0s DUMP: Package: libgenomicsdb-java Source: genomicsdb Version: 1.5.4-5 Installed-Size: 493 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-io-java (>= 2.18.0), libgetopt-java, libgoogle-gson-java, libguava-java, libhtsjdk-java (>= 4.1.3), libjson-simple-java, liblog4j2-java (>= 2.19.0), libprotobuf-java, libgenomicsdb-jni (>= 1.5.4-5), libgenomicsdb-jni (<< 1.5.4-5.1~) Description-en: sparse array storage library for genomics (Java library) GenomicsDB is built on top of a htslib fork and an internal array storage system for importing, querying and transforming variant data. Variant data is sparse by nature (sparse relative to the whole genome) and using sparse array data stores is a perfect fit for storing such data. . The GenomicsDB stores variant data in a 2D array where: - Each column corresponds to a genomic position (chromosome + position); - Each row corresponds to a sample in a VCF (or CallSet in the GA4GH terminology); - Each cell contains data for a given sample/CallSet at a given position; data is stored in the form of cell attributes; - Cells are stored in column major order - this makes accessing cells with the same column index (i.e. data for a given genomic position over all samples) fast. - Variant interval/gVCF interval data is stored in a cell at the start of the interval. The END is stored as a cell attribute. For variant intervals (such as deletions and gVCF REF blocks), an additional cell is stored at the END value of the variant interval. When queried for a given genomic position, the query library performs an efficient sweep to determine all intervals that intersect with the queried position. . This package contains the Java library. Description-md5: 6a43860137619ae15d009235c0ac2bc5 Homepage: https://www.genomicsdb.org/ Section: java Priority: optional Filename: pool/main/g/genomicsdb/libgenomicsdb-java_1.5.4-5_all.deb Size: 409684 MD5sum: 79f3454a1ab48bbe3db49f104386ecb7 SHA256: a9200f66b6e34783a2335fa2f7cff491bcca0f0af1ace367521568ef17172533 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'show', '--no-all-versions', 'libgenomicsdb-java'] 0m9.0s INFO: apt-cache knows about the following packages: libgenomicsdb-java 0m9.0s INFO: Running scripts pre_install 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_database-server'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_database-server'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_exceptions'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_exceptions'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_extras'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_extras'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy'] 0m9.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy', 'libgenomicsdb-java'] 0m9.1s DUMP: libgenomicsdb-java: Installed: (none) Candidate: 1.5.4-5 Version table: 1.5.4-5 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy', 'libgenomicsdb-java'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', '-y', 'install', 'libgenomicsdb-java'] 0m23.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser ca-certificates ca-certificates-java default-jre-headless ibverbs-providers java-common junit4 libamd-comgr2 libamdhip64-5 libapache-pom-java libatinject-jsr330-api-java libatomic1 libbrotli1 libcbor0.10 libcommons-beanutils-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcurl4t64 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 liberror-prone-java libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libezmorph-java libfabric1 libffi8 libfido2-1 libfmt10 libgenomicsdb-jni libgenomicsdb1 libgetopt-java libgnutls30t64 libgomp1 libgoogle-gson-java libgssapi-krb5-2 libguava-java libhamcrest-java libhsa-runtime64-1 libhsakmt1 libhtsjdk-java libhttpclient-java libhttpcore-java libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libicu72 libidn2-0 libjaxen-java libjpeg62-turbo libjson-java libjson-simple-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap2 liblightcouch-java libllvm17t64 liblog4j2-java libmbedcrypto16 libmbedtls21 libmbedx509-7 libmongodb-java libmunge2 libmuparserx4.0.12 libncbi-ngs3 libncbi-vdb3 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libopenmpi40 libp11-kit0 libpciaccess0 libpcsclite1 libpmix2t64 libprotobuf-java libprotobuf32t64 libpsl5t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 librhino-java librtmp1 libsasl2-2 libsasl2-modules-db libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1t64 libtasn1-6 libucx0 libunistring5 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxerces2-java libxext6 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxnvctrl0 libxom-java libz3-4 mpi-default-bin ncbi-vdb-data ocl-icd-libopencl1 openjdk-21-jre-headless openmpi-bin openmpi-common openssh-client openssl Suggested packages: liblocale-gettext-perl perl cron quota default-jre libatinject-jsr330-api-java-doc libcommons-collections3-java-doc libcommons-collections4-java-doc libasm-java libxz-java libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java gnutls-bin libgoogle-gson-java-doc krb5-doc krb5-user picard-tools python3 libhwloc-contrib-plugins libdom4j-java libjdom1-java libjson-simple-doc libjsr305-java-doc liblcms2-utils libactivation-java libcommons-csv-java libconversant-disruptor-java libdisruptor-java libgeronimo-jms-1.1-spec-java libjackson2-dataformat-xml-java libjackson2-dataformat-yaml libjansi-java libjctools-java libjeromq-java libmail-java libwoodstox-java libngs-java-doc pciutils pcscd rhino libxerces2-java-doc libxml-commons-resolver1.1-java-doc libxom-java-doc opencl-icd libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass Recommended packages: krb5-locales libldap-common publicsuffix libsasl2-modules libcups2t64 libfontconfig1 libfreetype6 libharfbuzz0b libasound2t64 xauth The following NEW packages will be installed: adduser ca-certificates ca-certificates-java default-jre-headless ibverbs-providers java-common junit4 libamd-comgr2 libamdhip64-5 libapache-pom-java libatinject-jsr330-api-java libatomic1 libbrotli1 libcbor0.10 libcommons-beanutils-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcurl4t64 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 liberror-prone-java libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libezmorph-java libfabric1 libffi8 libfido2-1 libfmt10 libgenomicsdb-java libgenomicsdb-jni libgenomicsdb1 libgetopt-java libgnutls30t64 libgomp1 libgoogle-gson-java libgssapi-krb5-2 libguava-java libhamcrest-java libhsa-runtime64-1 libhsakmt1 libhtsjdk-java libhttpclient-java libhttpcore-java libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libicu72 libidn2-0 libjaxen-java libjpeg62-turbo libjson-java libjson-simple-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap2 liblightcouch-java libllvm17t64 liblog4j2-java libmbedcrypto16 libmbedtls21 libmbedx509-7 libmongodb-java libmunge2 libmuparserx4.0.12 libncbi-ngs3 libncbi-vdb3 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libopenmpi40 libp11-kit0 libpciaccess0 libpcsclite1 libpmix2t64 libprotobuf-java libprotobuf32t64 libpsl5t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 librhino-java librtmp1 libsasl2-2 libsasl2-modules-db libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1t64 libtasn1-6 libucx0 libunistring5 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxerces2-java libxext6 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxnvctrl0 libxom-java libz3-4 mpi-default-bin ncbi-vdb-data ocl-icd-libopencl1 openjdk-21-jre-headless openmpi-bin openmpi-common openssh-client openssl 0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 152 MB of archives. After this operation, 595 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 adduser all 3.137 [140 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:10 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 openssh-client amd64 1:9.9p2-1 [970 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 java-common all 0.76 [6776 B] Get:15 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libnspr4 amd64 2:4.36-1 [110 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libnss3 amd64 2:3.108-1 [1393 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libpcsclite1 amd64 2.3.1-1 [56.0 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 openjdk-21-jre-headless amd64 21.0.6+7-1 [41.7 MB] Get:22 http://deb.debian.org/debian trixie/main amd64 default-jre-headless amd64 2:1.21-76 [3192 B] Get:23 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 55.0-1 [62.2 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 55.0-1 [351 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libhamcrest-java all 2.2-2 [121 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 junit4 all 4.13.2-5 [350 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-21 [23.6 MB] Get:34 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get:35 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get:36 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libapache-pom-java all 33-2 [5852 B] Get:44 http://deb.debian.org/debian trixie/main amd64 libatinject-jsr330-api-java all 1.0+ds1-6 [5112 B] Get:45 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-16 [9296 B] Get:46 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libcommons-collections3-java all 3.2.2-3 [530 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libcommons-beanutils-java all 1.9.4-2 [233 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 libcommons-codec-java all 1.17.1-1 [303 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 libcommons-collections4-java all 4.4-2 [682 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 libcommons-io-java all 2.18.0-1 [509 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libcommons-compress-java all 1.27.1-2 [641 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 libcommons-lang3-java all 3.17.0-1 [641 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 libjsr305-java all 0.1~+svn49-12 [26.6 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 libezmorph-java all 1.0.6-4 [75.9 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 55.0-1 [70.2 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 libgetopt-java all 1.0.14+dfsg-6 [25.7 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 libgoogle-gson-java all 2.10.1-1 [262 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 libslf4j-java all 1.7.32-1 [144 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 libjaxen-java all 1.1.6-5 [214 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get:88 http://deb.debian.org/debian trixie/main amd64 libxerces2-java all 2.12.2-1 [1440 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 libxom-java all 1.3.9-1 [174 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 libjson-java all 3.1.0+dfsg-2 [142 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [74.0 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb3 amd64 3.0.9+dfsg-2 [1189 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 libncbi-ngs3 amd64 3.0.9+dfsg-7+b2 [156 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libngs-jni amd64 3.0.9+dfsg-7+b2 [25.9 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 libngs-java amd64 3.0.9+dfsg-7+b2 [112 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 librhino-java all 1.7.15-1 [1382 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libsnappy-jni amd64 1.1.10.7-1 [6492 B] Get:102 http://deb.debian.org/debian trixie/main amd64 libsnappy-java all 1.1.10.7-1 [87.6 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libhtsjdk-java all 4.1.3+dfsg-2 [1841 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libjson-simple-java all 2.3.0-2 [61.7 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 libhttpcore-java all 4.4.16-1 [636 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 libhttpclient-java all 4.5.14-1 [1247 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 liblightcouch-java all 0.2.0-1 [75.0 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 libmongodb-java all 3.6.3-2 [1901 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 liblog4j2-java all 2.19.0-2 [2310 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 libprotobuf-java all 3.21.12-10 [1268 kB] Get:111 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-16 [137 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 libmuparserx4.0.12 amd64 4.0.12-2 [198 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 libprotobuf32t64 amd64 3.21.12-10+b4 [982 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.12.0-1 [164 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.16-1 [19.7 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.12.0-1 [18.1 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.6-3 [651 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libibumad3 amd64 55.0-1 [28.5 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 libibmad5 amd64 55.0-1 [43.3 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 libopenmpi40 amd64 5.0.7-1 [2365 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 openmpi-common all 5.0.7-1 [97.2 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 openmpi-bin amd64 5.0.7-1 [189 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 mpi-default-bin amd64 1.18 [2576 B] Get:134 http://deb.debian.org/debian trixie/main amd64 libgenomicsdb1 amd64 1.5.4-5 [1617 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libgenomicsdb-jni amd64 1.5.4-5 [84.9 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 libgenomicsdb-java all 1.5.4-5 [410 kB] Preconfiguring packages ... Fetched 152 MB in 1s (247 MB/s) Selecting previously unselected package adduser. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5073 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... Unpacking adduser (3.137) ... Setting up adduser (3.137) ... Selecting previously unselected package openssl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5144 files and directories currently installed.) Preparing to unpack .../000-openssl_3.4.1-1_amd64.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../001-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../002-libedit2_3.1-20250104-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20250104-1) ... Selecting previously unselected package libcbor0.10:amd64. Preparing to unpack .../003-libcbor0.10_0.10.2-2_amd64.deb ... Unpacking libcbor0.10:amd64 (0.10.2-2) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../004-libfido2-1_1.15.0-1+b1_amd64.deb ... Unpacking libfido2-1:amd64 (1.15.0-1+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../005-libkrb5support0_1.21.3-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../006-libk5crypto3_1.21.3-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../007-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../008-libkrb5-3_1.21.3-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../009-libgssapi-krb5-2_1.21.3-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-4) ... Selecting previously unselected package openssh-client. Preparing to unpack .../010-openssh-client_1%3a9.9p2-1_amd64.deb ... Unpacking openssh-client (1:9.9p2-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../011-ca-certificates-java_20240118_all.deb ... Unpacking ca-certificates-java (20240118) ... Selecting previously unselected package java-common. Preparing to unpack .../012-java-common_0.76_all.deb ... Unpacking java-common (0.76) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../013-liblcms2-2_2.16-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.16-2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../014-libjpeg62-turbo_1%3a2.1.5-3+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../015-libnspr4_2%3a4.36-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.36-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../016-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../017-libnss3_2%3a3.108-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.108-1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../018-libpcsclite1_2.3.1-1_amd64.deb ... Unpacking libpcsclite1:amd64 (2.3.1-1) ... Selecting previously unselected package openjdk-21-jre-headless:amd64. Preparing to unpack .../019-openjdk-21-jre-headless_21.0.6+7-1_amd64.deb ... Unpacking openjdk-21-jre-headless:amd64 (21.0.6+7-1) ... 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Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libedit2:amd64 (3.1-20250104-1) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libibumad3:amd64 (55.0-1) ... Setting up libibmad5:amd64 (55.0-1) ... Setting up libjson-simple-java (2.3.0-2) ... Setting up libgomp1:amd64 (14.2.0-16) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libsnappy1v5:amd64 (1.2.1-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libcommons-collections3-java (3.2.2-3) ... Setting up librhino-java (1.7.15-1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libmunge2:amd64 (0.5.16-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libjaxen-java (1.1.6-5) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libnspr4:amd64 (2:4.36-1) ... Setting up libapache-pom-java (33-2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-6) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up libhwloc15:amd64 (2.12.0-1) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libatomic1:amd64 (14.2.0-16) ... Setting up libpcsclite1:amd64 (2.3.1-1) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libhamcrest-java (2.2-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up libnuma1:amd64 (2.0.18-1+b1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Setting up libxml-commons-external-java (1.4.01-6) ... Setting up libnl-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.7-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up ncbi-vdb-data (3.0.9+dfsg-2) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libmbedcrypto16:amd64 (3.6.2-3) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libxerces2-java (2.12.2-1) ... Setting up libfido2-1:amd64 (1.15.0-1+b1) ... Setting up openssl (3.4.1-1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libsnappy-jni (1.1.10.7-1) ... Setting up libezmorph-java (1.0.6-4) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libfmt10:amd64 (10.1.1+ds1-4) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up libnss3:amd64 (2:3.108-1) ... Setting up libxom-java (1.3.9-1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libmbedx509-7:amd64 (3.6.2-3) ... Setting up libllvm17t64:amd64 (1:17.0.6-21) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libcommons-collections4-java (4.4-2) ... Setting up libcommons-lang3-java (3.17.0-1) ... Setting up libmbedtls21:amd64 (3.6.2-3) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libcommons-beanutils-java (1.9.4-2) ... Setting up libsnappy-java (1.1.10.7-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libcommons-codec-java (1.17.1-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libibverbs1:amd64 (55.0-1) ... Setting up openjdk-21-jre-headless:amd64 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ibverbs-providers:amd64 (55.0-1) ... Setting up libcommons-io-java (2.18.0-1) ... Setting up openssh-client (1:9.9p2-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... Setting up libhwloc-plugins:amd64 (2.12.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libpmix2t64:amd64 (5.0.6-3) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up librdmacm1t64:amd64 (55.0-1) ... Setting up liblightcouch-java (0.2.0-1) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up libncbi-ngs3:amd64 (3.0.9+dfsg-7+b2) ... Setting up libfabric1:amd64 (1.17.0-3.1) ... Setting up libngs-jni:amd64 (3.0.9+dfsg-7+b2) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up liblog4j2-java (2.19.0-2) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up libngs-java:amd64 (3.0.9+dfsg-7+b2) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up libopenmpi40:amd64 (5.0.7-1) ... Setting up openmpi-bin (5.0.7-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up mpi-default-bin (1.18) ... Setting up libgenomicsdb1 (1.5.4-5) ... Setting up libgenomicsdb-jni (1.5.4-5) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libguava-java (32.0.1-1) ... Setting up libprotobuf-java (3.21.12-10) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up junit4 (4.13.2-5) ... Setting up default-jre-headless (2:1.21-76) ... Setting up libjson-java (3.1.0+dfsg-2) ... Setting up libhtsjdk-java (4.1.3+dfsg-2) ... Setting up libgenomicsdb-java (1.5.4-5) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', '-y', 'install', 'libgenomicsdb-java'] 0m23.7s INFO: Running scripts post_install 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_install_exceptions'] 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_install_exceptions'] 0m23.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m24.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m24.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp6g_9ehas to sid 0m24.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m24.3s INFO: Running scripts pre_distupgrade 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_distupgrade_exceptions'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_distupgrade_exceptions'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', 'update'] 0m27.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7380 kB] Fetched 17.7 MB in 2s (9072 kB/s) Reading package lists... 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', 'update'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', '-yf', 'dist-upgrade'] 0m30.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: adduser bash gcc-14-base ibverbs-providers libatomic1 libattr1 libcap2 libgcc-s1 libgomp1 libhogweed6t64 libibmad5 libibumad3 libibverbs1 libjpeg62-turbo libnettle8t64 librdmacm1t64 libsemanage-common libsemanage2 libstdc++6 19 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4097 kB of archives. After this operation, 285 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.37-1.1 [1500 kB] Get:2 http://deb.debian.org/debian sid/main amd64 adduser all 3.141 [92.3 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-17 [9316 B] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-17 [49.1 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-17 [713 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-17 [137 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-17 [72.7 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.73-4 [27.3 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.8-1 [7720 B] Get:13 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.8-1 [94.4 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libibverbs1 amd64 56.0-1 [62.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 ibverbs-providers amd64 56.0-1 [356 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libibumad3 amd64 56.0-1 [29.7 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libibmad5 amd64 56.0-1 [44.3 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get:19 http://deb.debian.org/debian sid/main amd64 librdmacm1t64 amd64 56.0-1 [70.1 kB] Fetched 4097 kB in 0s (43.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8364 files and directories currently installed.) Preparing to unpack .../bash_5.2.37-1.1_amd64.deb ... Unpacking bash (5.2.37-1.1) over (5.2.37-1) ... Setting up bash (5.2.37-1.1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8364 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.141_all.deb ... Unpacking adduser (3.141) over (3.137) ... Setting up adduser (3.141) ... Installing new version of config file /etc/adduser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8341 files and directories currently installed.) Preparing to unpack .../libatomic1_14.2.0-17_amd64.deb ... Unpacking libatomic1:amd64 (14.2.0-17) over (14.2.0-16) ... Preparing to unpack .../gcc-14-base_14.2.0-17_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-17) over (14.2.0-16) ... Setting up gcc-14-base:amd64 (14.2.0-17) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8341 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-17_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-17) over (14.2.0-16) ... Setting up libstdc++6:amd64 (14.2.0-17) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8341 files and directories currently installed.) Preparing to unpack .../libgomp1_14.2.0-17_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-17) over (14.2.0-16) ... Preparing to unpack .../libgcc-s1_14.2.0-17_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-17) over (14.2.0-16) ... Setting up libgcc-s1:amd64 (14.2.0-17) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8341 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-3_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.2-3) over (1:2.5.2-2) ... Setting up libattr1:amd64 (1:2.5.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8341 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.73-4_amd64.deb ... Unpacking libcap2:amd64 (1:2.73-4) over (1:2.66-5+b1) ... Setting up libcap2:amd64 (1:2.73-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8340 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10.1-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10.1-1) over (3.10-1+b1) ... Setting up libnettle8t64:amd64 (3.10.1-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8338 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.8-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.8-1) over (3.7-2.1+b1) ... Setting up libsemanage2:amd64 (3.8-1) ... (Reading database ... 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Unpacking libibmad5:amd64 (56.0-1) over (55.0-1) ... Preparing to unpack .../4-libjpeg62-turbo_1%3a2.1.5-3.1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3.1) over (1:2.1.5-3+b1) ... Preparing to unpack .../5-librdmacm1t64_56.0-1_amd64.deb ... Unpacking librdmacm1t64:amd64 (56.0-1) over (55.0-1) ... Setting up libibverbs1:amd64 (56.0-1) ... Setting up ibverbs-providers:amd64 (56.0-1) ... Setting up libibumad3:amd64 (56.0-1) ... Setting up libibmad5:amd64 (56.0-1) ... Setting up libgomp1:amd64 (14.2.0-17) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3.1) ... Setting up libatomic1:amd64 (14.2.0-17) ... Setting up librdmacm1t64:amd64 (56.0-1) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for debianutils (5.21) ... 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', '-yf', 'dist-upgrade'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m30.4s DUMP: b356715fa339b4ecd6daedbaf69bf66b - 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'show', '--no-all-versions', 'libgenomicsdb-java'] 0m30.7s DUMP: Package: libgenomicsdb-java Source: genomicsdb Version: 1.5.4-5 Installed-Size: 493 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-io-java (>= 2.18.0), libgetopt-java, libgoogle-gson-java, libguava-java, libhtsjdk-java (>= 4.1.3), libjson-simple-java, liblog4j2-java (>= 2.19.0), libprotobuf-java, libgenomicsdb-jni (>= 1.5.4-5), libgenomicsdb-jni (<< 1.5.4-5.1~) Description-en: sparse array storage library for genomics (Java library) GenomicsDB is built on top of a htslib fork and an internal array storage system for importing, querying and transforming variant data. Variant data is sparse by nature (sparse relative to the whole genome) and using sparse array data stores is a perfect fit for storing such data. . The GenomicsDB stores variant data in a 2D array where: - Each column corresponds to a genomic position (chromosome + position); - Each row corresponds to a sample in a VCF (or CallSet in the GA4GH terminology); - Each cell contains data for a given sample/CallSet at a given position; data is stored in the form of cell attributes; - Cells are stored in column major order - this makes accessing cells with the same column index (i.e. data for a given genomic position over all samples) fast. - Variant interval/gVCF interval data is stored in a cell at the start of the interval. The END is stored as a cell attribute. For variant intervals (such as deletions and gVCF REF blocks), an additional cell is stored at the END value of the variant interval. When queried for a given genomic position, the query library performs an efficient sweep to determine all intervals that intersect with the queried position. . This package contains the Java library. Description-md5: 6a43860137619ae15d009235c0ac2bc5 Homepage: https://www.genomicsdb.org/ Section: java Priority: optional Filename: pool/main/g/genomicsdb/libgenomicsdb-java_1.5.4-5_all.deb Size: 409684 MD5sum: 79f3454a1ab48bbe3db49f104386ecb7 SHA256: a9200f66b6e34783a2335fa2f7cff491bcca0f0af1ace367521568ef17172533 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'show', '--no-all-versions', 'libgenomicsdb-java'] 0m30.7s INFO: apt-cache knows about the following packages: libgenomicsdb-java 0m30.7s INFO: Running scripts pre_install 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_database-server'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_database-server'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_exceptions'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_exceptions'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_extras'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_extras'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy'] 0m30.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy', 'libgenomicsdb-java'] 0m30.7s DUMP: libgenomicsdb-java: Installed: 1.5.4-5 Candidate: 1.5.4-5 Version table: *** 1.5.4-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy', 'libgenomicsdb-java'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', '-y', 'install', 'libgenomicsdb-java'] 0m31.3s DUMP: Reading package lists... Building dependency tree... Reading state information... libgenomicsdb-java is already the newest version (1.5.4-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', '-y', 'install', 'libgenomicsdb-java'] 0m31.3s INFO: Running scripts post_install 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_install_exceptions'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_install_exceptions'] 0m31.3s INFO: Running scripts post_distupgrade 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_distupgrade_exceptions'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_distupgrade_exceptions'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_distupgrade_zz_backports'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_distupgrade_zz_backports'] 0m31.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m31.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m31.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m32.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m32.2s INFO: Running scripts pre_install 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_database-server'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_database-server'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_exceptions'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_exceptions'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_extras'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_extras'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy'] 0m32.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy', 'libgenomicsdb-java'] 0m32.4s DUMP: libgenomicsdb-java: Installed: 1.5.4-5 Candidate: 1.5.4-5 Version table: *** 1.5.4-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-cache', 'policy', 'libgenomicsdb-java'] 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', '-y', 'install', 'libgenomicsdb-java=1.5.4-5'] 0m32.9s DUMP: Reading package lists... Building dependency tree... Reading state information... libgenomicsdb-java is already the newest version (1.5.4-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', '-y', 'install', 'libgenomicsdb-java=1.5.4-5'] 0m32.9s INFO: Running scripts post_install 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_install_exceptions'] 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_install_exceptions'] 0m32.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m33.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m33.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', '-ac', '--ignore-obsolete'] 0m35.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', '-ac', '--ignore-obsolete'] 0m35.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m35.6s DUMP: 0.15.6 0m35.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m35.6s INFO: Running adequate version 0.15.6 now. 0m35.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'libgenomicsdb-java'] 0m35.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'libgenomicsdb-java'] 0m35.7s INFO: Running scripts pre_remove 0m35.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m35.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m35.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m35.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m35.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_exceptions'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/pre_remove_exceptions'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.8s DUMP: install ok installed adduser adduser 3.141 install ok installed apt apt 2.9.30 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1 install ok installed bsdutils bsdutils 1:2.40.4-4 install ok installed ca-certificates ca-certificates 20241223 install ok installed ca-certificates-java ca-certificates-java 20240118 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed default-jre-headless default-jre-headless 2:1.21-76 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.15 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-17 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed ibverbs-providers:amd64 ibverbs-providers 56.0-1 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed java-common java-common 0.76 install ok installed junit4 junit4 4.13.2-5 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libamd-comgr2:amd64 libamd-comgr2 6.0+git20231212.4510c28+dfsg-3+b2 install ok installed libamdhip64-5 libamdhip64-5 5.7.1-5 install ok installed libapache-pom-java libapache-pom-java 33-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.29 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.30 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-6 install ok installed libatomic1:amd64 libatomic1 14.2.0-17 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblkid1:amd64 libblkid1 2.40.4-4 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-7 install ok installed libc6:amd64 libc6 2.40-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.73-4 install ok installed libcbor0.10:amd64 libcbor0.10 0.10.2-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcommons-beanutils-java libcommons-beanutils-java 1.9.4-2 install ok installed libcommons-codec-java libcommons-codec-java 1.17.1-1 install ok installed libcommons-collections3-java libcommons-collections3-java 3.2.2-3 install ok installed libcommons-collections4-java libcommons-collections4-java 4.4-2 install ok installed libcommons-compress-java libcommons-compress-java 1.27.1-2 install ok installed libcommons-io-java libcommons-io-java 2.18.0-1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-6 install ok installed libcommons-lang3-java libcommons-lang3-java 3.17.0-1 install ok installed libcommons-logging-java libcommons-logging-java 1.3.0-1 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.12.1-2 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.123-1 install ok installed libdrm-common libdrm-common 2.4.123-1 install ok installed libdrm2:amd64 libdrm2 2.4.123-1 install ok installed libedit2:amd64 libedit2 3.1-20250104-1 install ok installed libelf1t64:amd64 libelf1t64 0.192-4 install ok installed liberror-prone-java liberror-prone-java 2.18.0-1 install ok installed libevent-core-2.1-7t64:amd64 libevent-core-2.1-7t64 2.1.12-stable-10+b1 install ok installed libevent-pthreads-2.1-7t64:amd64 libevent-pthreads-2.1-7t64 2.1.12-stable-10+b1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libezmorph-java libezmorph-java 1.0.6-4 install ok installed libfabric1:amd64 libfabric1 1.17.0-3.1 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libfido2-1:amd64 libfido2-1 1.15.0-1+b1 install ok installed libfmt10:amd64 libfmt10 10.1.1+ds1-4 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-17 install ok installed libgenomicsdb-java libgenomicsdb-java 1.5.4-5 install ok installed libgenomicsdb-jni libgenomicsdb-jni 1.5.4-5 install ok installed libgenomicsdb1 libgenomicsdb1 1.5.4-5 install ok installed libgetopt-java libgetopt-java 1.0.14+dfsg-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-17 install ok installed libgoogle-gson-java libgoogle-gson-java 2.10.1-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-4 install ok installed libguava-java libguava-java 32.0.1-1 install ok installed libhamcrest-java libhamcrest-java 2.2-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhsa-runtime64-1:amd64 libhsa-runtime64-1 6.1.2-3 install ok installed libhsakmt1:amd64 libhsakmt1 6.2.4+ds-1 install ok installed libhtsjdk-java libhtsjdk-java 4.1.3+dfsg-2 install ok installed libhttpclient-java libhttpclient-java 4.5.14-1 install ok installed libhttpcore-java libhttpcore-java 4.4.16-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.12.0-1 install ok installed libhwloc15:amd64 libhwloc15 2.12.0-1 install ok installed libibmad5:amd64 libibmad5 56.0-1 install ok installed libibumad3:amd64 libibumad3 56.0-1 install ok installed libibverbs1:amd64 libibverbs1 56.0-1 install ok installed libicu72:amd64 libicu72 72.1-6 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libjaxen-java libjaxen-java 1.1.6-5 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3.1 install ok installed libjson-java libjson-java 3.1.0+dfsg-2 install ok installed libjson-simple-java libjson-simple-java 2.3.0-2 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-12 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-4 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-4 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-1 install ok installed liblightcouch-java liblightcouch-java 0.2.0-1 install ok installed libllvm17t64:amd64 libllvm17t64 1:17.0.6-21 install ok installed liblog4j2-java liblog4j2-java 2.19.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.2-3 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.2-3 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.2-3 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmongodb-java libmongodb-java 3.6.3-2 install ok installed libmount1:amd64 libmount1 2.40.4-4 install ok installed libmunge2:amd64 libmunge2 0.5.16-1 install ok installed libmuparserx4.0.12:amd64 libmuparserx4.0.12 4.0.12-2 install ok installed libncbi-ngs3:amd64 libncbi-ngs3 3.0.9+dfsg-7+b2 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.0.9+dfsg-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.6.0-2 install ok installed libngs-java:amd64 libngs-java 3.0.9+dfsg-7+b2 install ok installed libngs-jni:amd64 libngs-jni 3.0.9+dfsg-7+b2 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.3+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.3+b1 install ok installed libnspr4:amd64 libnspr4 2:4.36-1 install ok installed libnss3:amd64 libnss3 2:3.108-1 install ok installed libnuma1:amd64 libnuma1 2.0.18-1+b1 install ok installed libopenmpi40:amd64 libopenmpi40 5.0.7-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpcsclite1:amd64 libpcsclite1 2.3.1-1 install ok installed libpmix2t64:amd64 libpmix2t64 5.0.6-3 install ok installed libprotobuf-java libprotobuf-java 3.21.12-10 install ok installed libprotobuf32t64:amd64 libprotobuf32t64 3.21.12-10+b4 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.3 install ok installed libpsm2-2 libpsm2-2 11.2.185-2.1 install ok installed librdmacm1t64:amd64 librdmacm1t64 56.0-1 install ok installed librhino-java librhino-java 1.7.15-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-8+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-8+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.8-3 install ok installed libsemanage-common libsemanage-common 3.8-1 install ok installed libsemanage2:amd64 libsemanage2 3.8-1 install ok installed libsepol2:amd64 libsepol2 3.8-1 install ok installed libslf4j-java libslf4j-java 1.7.32-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-4 install ok installed libsnappy-java libsnappy-java 1.1.10.7-1 install ok installed libsnappy-jni libsnappy-jni 1.1.10.7-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.1-1+b1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-17 install ok installed libsystemd0:amd64 libsystemd0 257.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-1 install ok installed libucx0:amd64 libucx0 1.17.0+ds-3 install ok installed libudev1:amd64 libudev1 257.3-1 install ok installed libunistring5:amd64 libunistring5 1.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.4-4 install ok installed libx11-6:amd64 libx11-6 2:1.8.10-2 install ok installed libx11-data libx11-data 2:1.8.10-2 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxerces2-java libxerces2-java 2.12.2-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxml-commons-external-java libxml-commons-external-java 1.4.01-6 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-11 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.2+b1 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1+b2 install ok installed libxom-java libxom-java 1.3.9-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-4 install ok installed login.defs login.defs 1:4.17.2-5 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-4 install ok installed mpi-default-bin mpi-default-bin 1.18 install ok installed ncbi-vdb-data ncbi-vdb-data 3.0.9+dfsg-2 install ok installed ncurses-base ncurses-base 6.5+20250216-1 install ok installed ncurses-bin ncurses-bin 6.5+20250216-1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.2-1+b2 install ok installed openjdk-21-jre-headless:amd64 openjdk-21-jre-headless 21.0.6+7-1 install ok installed openmpi-bin openmpi-bin 5.0.7-1 install ok installed openmpi-common openmpi-common 5.0.7-1 install ok installed openssh-client openssh-client 1:9.9p2-1 install ok installed openssl openssl 3.4.1-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.2-5 install ok installed perl-base perl-base 5.40.1-2 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', 'remove', 'adduser', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'ibverbs-providers:amd64', 'java-common', 'junit4', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4t64:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'liberror-prone-java', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libezmorph-java', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfmt10:amd64', 'libgenomicsdb-jni', 'libgenomicsdb1', 'libgetopt-java', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgoogle-gson-java', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libhamcrest-java', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libjaxen-java', 'libjpeg62-turbo:amd64', 'libjson-java', 'libjson-simple-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblightcouch-java', 'libllvm17t64:amd64', 'liblog4j2-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmongodb-java', 'libmunge2:amd64', 'libmuparserx4.0.12:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libp11-kit0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpmix2t64:amd64', 'libprotobuf-java', 'libprotobuf32t64:amd64', 'libpsl5t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxom-java', 'libz3-4:amd64', 'mpi-default-bin', 'ncbi-vdb-data', 'ocl-icd-libopencl1:amd64', 'openjdk-21-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'libgenomicsdb-java'] 0m40.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser ca-certificates ca-certificates-java default-jre-headless ibverbs-providers java-common junit4 libamd-comgr2 libamdhip64-5 libapache-pom-java libatinject-jsr330-api-java libatomic1 libbrotli1 libcbor0.10 libcommons-beanutils-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcurl4t64 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 liberror-prone-java libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libezmorph-java libfabric1 libffi8 libfido2-1 libfmt10 libgenomicsdb-java libgenomicsdb-jni libgenomicsdb1 libgetopt-java libgnutls30t64 libgomp1 libgoogle-gson-java libgssapi-krb5-2 libguava-java libhamcrest-java libhsa-runtime64-1 libhsakmt1 libhtsjdk-java libhttpclient-java libhttpcore-java libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libicu72 libidn2-0 libjaxen-java libjpeg62-turbo libjson-java libjson-simple-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap2 liblightcouch-java libllvm17t64 liblog4j2-java libmbedcrypto16 libmbedtls21 libmbedx509-7 libmongodb-java libmunge2 libmuparserx4.0.12 libncbi-ngs3 libncbi-vdb3 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libopenmpi40 libp11-kit0 libpciaccess0 libpcsclite1 libpmix2t64 libprotobuf-java libprotobuf32t64 libpsl5t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 librhino-java librtmp1 libsasl2-2 libsasl2-modules-db libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1t64 libtasn1-6 libucx0 libunistring5 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxerces2-java libxext6 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxnvctrl0 libxom-java libz3-4 mpi-default-bin ncbi-vdb-data ocl-icd-libopencl1 openjdk-21-jre-headless openmpi-bin openmpi-common openssh-client openssl 0 upgraded, 0 newly installed, 136 to remove and 0 not upgraded. After this operation, 594 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8336 files and directories currently installed.) Removing libgenomicsdb-java (1.5.4-5) ... Removing libgenomicsdb-jni (1.5.4-5) ... Removing libgenomicsdb1 (1.5.4-5) ... Removing mpi-default-bin (1.18) ... Removing openmpi-bin (5.0.7-1) ... Removing libopenmpi40:amd64 (5.0.7-1) ... Removing libucx0:amd64 (1.17.0+ds-3) ... Removing libfabric1:amd64 (1.17.0-3.1) ... Removing ibverbs-providers:amd64 (56.0-1) ... Removing librdmacm1t64:amd64 (56.0-1) ... Removing libibverbs1:amd64 (56.0-1) ... Removing openssh-client (1:9.9p2-1) ... Removing adduser (3.141) ... Removing libhtsjdk-java (4.1.3+dfsg-2) ... Removing libjson-java (3.1.0+dfsg-2) ... Removing junit4 (4.13.2-5) ... Removing default-jre-headless (2:1.21-76) ... Removing openjdk-21-jre-headless:amd64 (21.0.6+7-1) ... Removing ca-certificates-java (20240118) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing java-common (0.76) ... Removing libamdhip64-5 (5.7.1-5) ... Removing libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Removing libcommons-beanutils-java (1.9.4-2) ... Removing libcommons-jexl2-java (2.1.1-6) ... Removing libcommons-lang3-java (3.17.0-1) ... Removing libprotobuf-java (3.21.12-10) ... Removing libatomic1:amd64 (14.2.0-17) ... Removing libcurl4t64:amd64 (8.12.1-2) ... Removing libbrotli1:amd64 (1.1.0-2+b6) ... Removing libfido2-1:amd64 (1.15.0-1+b1) ... Removing libcbor0.10:amd64 (0.10.2-2) ... Removing libcommons-compress-java (1.27.1-2) ... Removing liblog4j2-java (2.19.0-2) ... Removing liblightcouch-java (0.2.0-1) ... Removing libhttpclient-java (4.5.14-1) ... Removing libcommons-codec-java (1.17.1-1) ... Removing libcommons-collections3-java (3.2.2-3) ... Removing libcommons-collections4-java (4.4-2) ... Removing libcommons-io-java (2.18.0-1) ... Removing libhsa-runtime64-1:amd64 (6.1.2-3) ... Removing libhsakmt1:amd64 (6.2.4+ds-1) ... Removing libdrm-amdgpu1:amd64 (2.4.123-1) ... Removing libdrm2:amd64 (2.4.123-1) ... Removing libdrm-common (2.4.123-1) ... Removing libllvm17t64:amd64 (1:17.0.6-21) ... Removing libedit2:amd64 (3.1-20250104-1) ... Removing libelf1t64:amd64 (0.192-4) ... Removing libpmix2t64:amd64 (5.0.6-3) ... Removing libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing libezmorph-java (1.0.6-4) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libgnutls30t64:amd64 (3.8.9-2) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libffi8:amd64 (3.4.7-1) ... Removing libfmt10:amd64 (10.1.1+ds1-4) ... Removing libgetopt-java (1.0.14+dfsg-6) ... Removing libgomp1:amd64 (14.2.0-17) ... Removing libgoogle-gson-java (2.10.1-1) ... Removing libgssapi-krb5-2:amd64 (1.21.3-4) ... Removing libhamcrest-java (2.2-2) ... Removing libhttpcore-java (4.4.16-1) ... Removing libhwloc-plugins:amd64 (2.12.0-1) ... Removing libhwloc15:amd64 (2.12.0-1) ... Removing libibmad5:amd64 (56.0-1) ... Removing libibumad3:amd64 (56.0-1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Removing libicu72:amd64 (72.1-6) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.7-2+b1) ... Removing libxom-java (1.3.9-1) ... Removing libjaxen-java (1.1.6-5) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3.1) ... Removing libjson-simple-java (2.3.0-2) ... Removing libkrb5-3:amd64 (1.21.3-4) ... Removing libk5crypto3:amd64 (1.21.3-4) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-4) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing libldap2:amd64 (2.6.9+dfsg-1) ... Removing libngs-java:amd64 (3.0.9+dfsg-7+b2) ... Removing libngs-jni:amd64 (3.0.9+dfsg-7+b2) ... Removing libncbi-ngs3:amd64 (3.0.9+dfsg-7+b2) ... Removing libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... Removing libmbedtls21:amd64 (3.6.2-3) ... Removing libmbedx509-7:amd64 (3.6.2-3) ... Removing libmbedcrypto16:amd64 (3.6.2-3) ... Removing libmongodb-java (3.6.3-2) ... Removing libmunge2:amd64 (0.5.16-1) ... Removing libmuparserx4.0.12:amd64 (4.0.12-2) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libnghttp3-9:amd64 (1.6.0-2) ... Removing libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Removing libnl-3-200:amd64 (3.7.0-0.3+b1) ... Removing libnss3:amd64 (2:3.108-1) ... Removing libnspr4:amd64 (2:4.36-1) ... Removing libpsm2-2 (11.2.185-2.1) ... Removing libnuma1:amd64 (2.0.18-1+b1) ... Removing libpciaccess0:amd64 (0.17-3+b3) ... Removing libpcsclite1:amd64 (2.3.1-1) ... Removing libprotobuf32t64:amd64 (3.21.12-10+b4) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing librhino-java (1.7.15-1) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Removing libslf4j-java (1.7.32-1) ... Removing libsnappy-java (1.1.10.7-1) ... Removing libsnappy-jni (1.1.10.7-1) ... Removing libsnappy1v5:amd64 (1.2.1-1+b1) ... Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libunistring5:amd64 (1.3-1) ... Removing libxnvctrl0:amd64 (535.171.04-1+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing libx11-6:amd64 (2:1.8.10-2) ... Removing libx11-data (2:1.8.10-2) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing libxerces2-java (2.12.2-1) ... Removing libxml-commons-external-java (1.4.01-6) ... Removing libxml-commons-resolver1.1-java (1.2-11) ... Removing libz3-4:amd64 (4.13.3-1) ... Removing ncbi-vdb-data (3.0.9+dfsg-2) ... Removing ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Removing openmpi-common (5.0.7-1) ... Removing openssl (3.4.1-1) ... Removing libcommons-logging-java (1.3.0-1) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (33-2) ... Removing liberror-prone-java (2.18.0-1) ... Removing libguava-java (32.0.1-1) ... Removing libatinject-jsr330-api-java (1.0+ds1-6) ... Removing libjsr305-java (0.1~+svn49-12) ... Processing triggers for libc-bin (2.40-7) ... 0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', 'remove', 'adduser', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'ibverbs-providers:amd64', 'java-common', 'junit4', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4t64:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'liberror-prone-java', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libezmorph-java', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfmt10:amd64', 'libgenomicsdb-jni', 'libgenomicsdb1', 'libgetopt-java', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgoogle-gson-java', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libhamcrest-java', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libjaxen-java', 'libjpeg62-turbo:amd64', 'libjson-java', 'libjson-simple-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblightcouch-java', 'libllvm17t64:amd64', 'liblog4j2-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmongodb-java', 'libmunge2:amd64', 'libmuparserx4.0.12:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libp11-kit0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpmix2t64:amd64', 'libprotobuf-java', 'libprotobuf32t64:amd64', 'libpsl5t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxom-java', 'libz3-4:amd64', 'mpi-default-bin', 'ncbi-vdb-data', 'ocl-icd-libopencl1:amd64', 'openjdk-21-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'libgenomicsdb-java'] 0m40.2s INFO: Running scripts post_remove 0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_remove_exceptions'] 0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_remove_exceptions'] 0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg', '--purge', 'adduser', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'ibverbs-providers:amd64', 'java-common', 'junit4', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4t64:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'liberror-prone-java', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libezmorph-java', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfmt10:amd64', 'libgenomicsdb-jni', 'libgenomicsdb1', 'libgetopt-java', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgoogle-gson-java', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libhamcrest-java', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libjaxen-java', 'libjpeg62-turbo:amd64', 'libjson-java', 'libjson-simple-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblightcouch-java', 'libllvm17t64:amd64', 'liblog4j2-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmongodb-java', 'libmunge2:amd64', 'libmuparserx4.0.12:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libp11-kit0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpmix2t64:amd64', 'libprotobuf-java', 'libprotobuf32t64:amd64', 'libpsl5t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxom-java', 'libz3-4:amd64', 'mpi-default-bin', 'ncbi-vdb-data', 'ocl-icd-libopencl1:amd64', 'openjdk-21-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl'] 0m40.4s DUMP: (Reading database ... 5143 files and directories currently installed.) Purging configuration files for adduser (3.141) ... Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20240118) ... dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for ibverbs-providers:amd64 (56.0-1) ... Purging configuration files for java-common (0.76) ... dpkg: warning: ignoring request to remove junit4 which isn't installed dpkg: warning: ignoring request to remove libamd-comgr2 which isn't installed dpkg: warning: ignoring request to remove libamdhip64-5 which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcbor0.10 which isn't installed dpkg: warning: ignoring request to remove libcommons-beanutils-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-collections3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-collections4-java which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove liberror-prone-java which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libezmorph-java which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfmt10 which isn't installed dpkg: warning: ignoring request to remove libgenomicsdb-jni which isn't installed dpkg: warning: ignoring request to remove libgenomicsdb1 which isn't installed dpkg: warning: ignoring request to remove libgetopt-java which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgoogle-gson-java which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-4) ... dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libhamcrest-java which isn't installed dpkg: warning: ignoring request to remove libhsa-runtime64-1 which isn't installed dpkg: warning: ignoring request to remove libhsakmt1 which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libhttpclient-java which isn't installed dpkg: warning: ignoring request to remove libhttpcore-java which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibmad5 which isn't installed dpkg: warning: ignoring request to remove libibumad3 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libjaxen-java which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjson-java which isn't installed dpkg: warning: ignoring request to remove libjson-simple-java which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove liblightcouch-java which isn't installed dpkg: warning: ignoring request to remove libllvm17t64 which isn't installed dpkg: warning: ignoring request to remove liblog4j2-java which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libmongodb-java which isn't installed dpkg: warning: ignoring request to remove libmunge2 which isn't installed dpkg: warning: ignoring request to remove libmuparserx4.0.12 which isn't installed dpkg: warning: ignoring request to remove libncbi-ngs3 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libngs-java which isn't installed dpkg: warning: ignoring request to remove libngs-jni which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-0.3+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi40 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libpmix2t64 which isn't installed dpkg: warning: ignoring request to remove libprotobuf-java which isn't installed dpkg: warning: ignoring request to remove libprotobuf32t64 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.3) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1t64 which isn't installed dpkg: warning: ignoring request to remove librhino-java which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libslf4j-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxerces2-java which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml-commons-external-java which isn't installed Purging configuration files for libxml-commons-resolver1.1-java (1.2-11) ... dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libxom-java which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed dpkg: warning: ignoring request to remove ncbi-vdb-data which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openjdk-21-jre-headless:amd64 (21.0.6+7-1) ... Purging configuration files for openmpi-bin (5.0.7-1) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:9.9p2-1) ... Purging configuration files for openssl (3.4.1-1) ... 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg', '--purge', 'adduser', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'ibverbs-providers:amd64', 'java-common', 'junit4', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4t64:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'liberror-prone-java', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libezmorph-java', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfmt10:amd64', 'libgenomicsdb-jni', 'libgenomicsdb1', 'libgetopt-java', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgoogle-gson-java', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libhamcrest-java', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libjaxen-java', 'libjpeg62-turbo:amd64', 'libjson-java', 'libjson-simple-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblightcouch-java', 'libllvm17t64:amd64', 'liblog4j2-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmongodb-java', 'libmunge2:amd64', 'libmuparserx4.0.12:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libp11-kit0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpmix2t64:amd64', 'libprotobuf-java', 'libprotobuf32t64:amd64', 'libpsl5t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxom-java', 'libz3-4:amd64', 'mpi-default-bin', 'ncbi-vdb-data', 'ocl-icd-libopencl1:amd64', 'openjdk-21-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg', '--purge', 'libgenomicsdb-java'] 0m40.4s DUMP: dpkg: warning: ignoring request to remove libgenomicsdb-java which isn't installed 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg', '--purge', 'libgenomicsdb-java'] 0m40.4s INFO: Running scripts post_purge 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_purge_exceptions'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_purge_exceptions'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg', '--purge', '--pending'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg', '--purge', '--pending'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg', '--remove', '--pending'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg', '--remove', '--pending'] 0m40.4s INFO: Running scripts post_test 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_test_exceptions'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'tmp/scripts/post_test_exceptions'] 0m40.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m40.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg-divert', '--list'] 0m40.9s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'dpkg-divert', '--list'] 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', 'clean'] 0m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas', 'apt-get', 'clean'] 0m40.9s DEBUG: Recording chroot state 0m41.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/shm'] 0m41.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/shm'] 0m41.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/console'] 0m41.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/console'] 0m41.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/ptmx'] 0m41.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/ptmx'] 0m41.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/pts'] 0m41.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/dev/pts'] 0m41.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/proc'] 0m42.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas/proc'] 0m42.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m42.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6g_9ehas'] 0m42.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp6g_9ehas 0m42.1s INFO: PASS: Upgrading between Debian distributions. 0m42.1s INFO: PASS: All tests. 0m42.1s INFO: piuparts run ends. ret=0 End: 2025-02-24 03:56:26 GMT