Start: 2026-10-07 15:59:54 GMT [testing] Package: libgenomicsdb-jni Source: genomicsdb Version: 1.5.5-2 Installed-Size: 354 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.32), libfmt10 (>= 10.1.1+ds1), libgcc-s1 (>= 3.0), libgenomicsdb1 (= 1.5.5-2), libprotobuf32t64 (>= 3.21.12), libstdc++6 (>= 13.1) Description: sparse array storage library for genomics (Java native bindings) Homepage: https://www.genomicsdb.org/ Description-md5: d734bbbeaf3aa7f51087b08e4ff6dc74 Section: java Priority: optional Filename: pool/main/g/genomicsdb/libgenomicsdb-jni_1.5.5-2_amd64.deb Size: 86776 MD5sum: 97a2714c62acf9e8af77d0eba80a78aa SHA256: c8ae295bf8a255a0296aa51d346ee0932b22c684b0a663282470ec7910d75487 [sid] Package: libgenomicsdb-jni Source: genomicsdb (1.5.5-3) Version: 1.5.5-3+b1 Installed-Size: 402 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.32), libfmt11 (>= 11.1.1+ds1), libgcc-s1 (>= 3.0), libgenomicsdb1 (= 1.5.5-3+b1), libprotobuf32t64 (>= 3.21.12), libstdc++6 (>= 13.1) Description: sparse array storage library for genomics (Java native bindings) Homepage: https://www.genomicsdb.org/ Description-md5: d734bbbeaf3aa7f51087b08e4ff6dc74 Section: java Priority: optional Filename: pool/main/g/genomicsdb/libgenomicsdb-jni_1.5.5-3+b1_amd64.deb Size: 102616 MD5sum: 6fcf8d8303e3d0130d22eaaf6e88285c SHA256: a91b11fd485a97be3bc40ec257969d105eb52ee21cc2e43691c152db875e133b Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libgenomicsdb-jni=1.5.5-3+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291514~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libgenomicsdb-jni=1.5.5-3+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.12.111+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.111-1 (2026-09-28) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpf6twcajw 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpf6twcajw 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpf6twcajw/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', 'update'] 0m3.0s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9990 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6616 kB] Fetched 16.8 MB in 2s (9901 kB/s) Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', '-yf', 'dist-upgrade'] 0m5.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libmd0 libmount1 libsmartcols1 libuuid1 login login.defs mount passwd tzdata util-linux 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4079 kB of archives. After this operation, 98.3 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.42.4-1 [34.5 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.42.4-1 [185 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.42.4-1 [232 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.42.4-1 [153 kB] Get:5 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.42.4-1 [1254 kB] Get:6 http://deb.debian.org/debian forky/main amd64 mount amd64 2.42.4-1 [172 kB] Get:7 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.42.4-1 [124 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libmd0 amd64 1.3.0-1 [45.4 kB] Get:9 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.42.4-1 [92.9 kB] Get:10 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.20.2-2 [223 kB] Get:11 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.20.2-2 [1300 kB] Get:12 http://deb.debian.org/debian forky/main amd64 tzdata all 2026e-1 [262 kB] Preconfiguring packages ... Fetched 4079 kB in 0s (30.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libuuid1_2.42.4-1_amd64.deb ... Unpacking libuuid1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libuuid1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libblkid1_2.42.4-1_amd64.deb ... Unpacking libblkid1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libblkid1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libmount1_2.42.4-1_amd64.deb ... Unpacking libmount1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libmount1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.42.4-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libsmartcols1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../util-linux_2.42.4-1_amd64.deb ... Unpacking util-linux (2.42.4-1) over (2.42.3-1) ... Setting up util-linux (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../mount_2.42.4-1_amd64.deb ... Unpacking mount (2.42.4-1) over (2.42.3-1) ... Preparing to unpack .../login_1%3a4.16.0-2+really2.42.4-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.42.4-1) over (1:4.16.0-2+really2.42.3-1) ... Preparing to unpack .../libmd0_1.3.0-1_amd64.deb ... Unpacking libmd0:amd64 (1.3.0-1) over (1.2.0-2) ... Setting up libmd0:amd64 (1.3.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.42.4-1_amd64.deb ... Unpacking bsdutils (1:2.42.4-1) over (1:2.42.3-1) ... Preparing to unpack .../login.defs_1%3a4.20.2-2_all.deb ... Unpacking login.defs (1:4.20.2-2) over (1:4.19.3-2) ... Preparing to unpack .../passwd_1%3a4.20.2-2_amd64.deb ... Unpacking passwd (1:4.20.2-2) over (1:4.19.3-2) ... Preparing to unpack .../tzdata_2026e-1_all.deb ... Unpacking tzdata (2026e-1) over (2026c-1) ... Setting up bsdutils (1:2.42.4-1) ... Setting up login.defs (1:4.20.2-2) ... Installing new version of config file /etc/login.defs ... Setting up tzdata (2026e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Oct 7 15:59:59 UTC 2026. Universal Time is now: Wed Oct 7 15:59:59 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up passwd (1:4.20.2-2) ... Setting up mount (2.42.4-1) ... Setting up login (1:4.16.0-2+really2.42.4-1) ... Processing triggers for libc-bin (2.43-6) ... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', '-yf', 'dist-upgrade'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.8s DUMP: f3c92142e49ec6e3fc2a9887843d0a83 - 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.8s INFO: Running scripts post_setup 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_dummy_users'] 0m6.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_dummy_users'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.7s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-6 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-6 install ok installed libc6:amd64 libc6 2.43-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.2-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.20.2-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m7.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m7.1s INFO: Running scripts is_testable 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s INFO: Running scripts pre_test 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_test_exceptions'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_test_exceptions'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_test_root_password'] 0m7.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_test_root_password'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'show', '--no-all-versions', 'libgenomicsdb-jni'] 0m7.3s DUMP: Package: libgenomicsdb-jni Source: genomicsdb Version: 1.5.5-2 Installed-Size: 354 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.32), libfmt10 (>= 10.1.1+ds1), libgcc-s1 (>= 3.0), libgenomicsdb1 (= 1.5.5-2), libprotobuf32t64 (>= 3.21.12), libstdc++6 (>= 13.1) Description-en: sparse array storage library for genomics (Java native bindings) GenomicsDB is built on top of a htslib fork and an internal array storage system for importing, querying and transforming variant data. Variant data is sparse by nature (sparse relative to the whole genome) and using sparse array data stores is a perfect fit for storing such data. . The GenomicsDB stores variant data in a 2D array where: - Each column corresponds to a genomic position (chromosome + position); - Each row corresponds to a sample in a VCF (or CallSet in the GA4GH terminology); - Each cell contains data for a given sample/CallSet at a given position; data is stored in the form of cell attributes; - Cells are stored in column major order - this makes accessing cells with the same column index (i.e. data for a given genomic position over all samples) fast. - Variant interval/gVCF interval data is stored in a cell at the start of the interval. The END is stored as a cell attribute. For variant intervals (such as deletions and gVCF REF blocks), an additional cell is stored at the END value of the variant interval. When queried for a given genomic position, the query library performs an efficient sweep to determine all intervals that intersect with the queried position. . This package contains the Java native bindings. Description-md5: d734bbbeaf3aa7f51087b08e4ff6dc74 Homepage: https://www.genomicsdb.org/ Section: java Priority: optional Filename: pool/main/g/genomicsdb/libgenomicsdb-jni_1.5.5-2_amd64.deb Size: 86776 MD5sum: 97a2714c62acf9e8af77d0eba80a78aa SHA256: c8ae295bf8a255a0296aa51d346ee0932b22c684b0a663282470ec7910d75487 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'show', '--no-all-versions', 'libgenomicsdb-jni'] 0m7.3s INFO: apt-cache knows about the following packages: libgenomicsdb-jni 0m7.3s INFO: Running scripts pre_install 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_database-server'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_database-server'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy'] 0m7.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy', 'libgenomicsdb-jni'] 0m7.4s DUMP: libgenomicsdb-jni: Installed: (none) Candidate: 1.5.5-2 Version table: 1.5.5-2 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy', 'libgenomicsdb-jni'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', '-y', 'install', 'libgenomicsdb-jni'] 0m19.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ibverbs-providers libamd-comgr3 libamdhip64-6 libbrotli1 libcbor0.10 libclang-common-21-dev libcom-err2 libcurl4t64 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libffi8 libfido2-1 libfmt10 libfuse3-4 libgenomicsdb1 libgomp1 libgssapi-krb5-2 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libllvm21 libmunge2 libmuparserx4.0.12 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpmix2t64 libprotobuf32t64 libprrte-bin libprrte3 libpsl5t64 libpsm2-2 librdmacm1t64 libsasl2-2 libsasl2-modules-db libssh2-1t64 libsystemd-shared libucc1 libucx0 libunistring5 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2-16 libxnvctrl0 libz3-4 libze1 mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-common pci.ids systemd Suggested packages: fuse3 krb5-doc krb5-user libhwloc-contrib-plugins libapparmor1 libarchive13t64 libbpf1 libcryptsetup12 libdw1t64 libfdisk1 libkmod2 libmicrohttpd12t64 libp11-kit0 libpwquality1 libqrencode4 libtss2-esys-3.0.2-0t64 libtss2-mu-4.0.1-0t64 libtss2-rc0t64 libtss2-tcti-device0t64 opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass systemd-container systemd-homed systemd-imds systemd-userdbd systemd-boot systemd-report systemd-resolved systemd-repart polkitd Recommended packages: libclang-rt-21-dev ca-certificates krb5-locales libldap-common libpmix-dev publicsuffix libsasl2-modules xauth default-dbus-system-bus | dbus-system-bus linux-sysctl-defaults systemd-timesyncd | time-daemon systemd-tpm systemd-cryptsetup libapparmor1 libbpf1 libcryptsetup12 libkmod2 The following NEW packages will be installed: ibverbs-providers libamd-comgr3 libamdhip64-6 libbrotli1 libcbor0.10 libclang-common-21-dev libcom-err2 libcurl4t64 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libffi8 libfido2-1 libfmt10 libfuse3-4 libgenomicsdb-jni libgenomicsdb1 libgomp1 libgssapi-krb5-2 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libllvm21 libmunge2 libmuparserx4.0.12 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpmix2t64 libprotobuf32t64 libprrte-bin libprrte3 libpsl5t64 libpsm2-2 librdmacm1t64 libsasl2-2 libsasl2-modules-db libssh2-1t64 libsystemd-shared libucc1 libucx0 libunistring5 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2-16 libxnvctrl0 libz3-4 libze1 mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-common pci.ids systemd 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 86.0 MB of archives. After this operation, 360 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libsystemd-shared amd64 262-1 [2789 kB] Get:2 http://deb.debian.org/debian forky/main amd64 systemd amd64 262-1 [3477 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libcbor0.10 amd64 0.10.2-2.2 [29.0 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libfido2-1 amd64 1.17.0-2 [80.5 kB] Get:5 http://deb.debian.org/debian forky/main amd64 openssh-common amd64 1:10.5p1-1 [499 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libedit2 amd64 3.1-20260512-1 [93.6 kB] Get:7 http://deb.debian.org/debian forky/main amd64 openssh-client amd64 1:10.5p1-1 [734 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libnl-3-200 amd64 3.12.0-2+b1 [62.2 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libnl-route-3-200 amd64 3.12.0-2+b1 [200 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libibverbs1 amd64 64.0-1 [66.5 kB] Get:11 http://deb.debian.org/debian forky/main amd64 ibverbs-providers amd64 64.0-1 [418 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libz3-4 amd64 4.13.3-1.1 [8644 kB] Get:15 http://deb.debian.org/debian forky/main amd64 libllvm21 amd64 1:21.1.8-13 [28.3 MB] Get:16 http://deb.debian.org/debian forky/main amd64 libclang-common-21-dev amd64 1:21.1.8-13 [769 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libamd-comgr3 amd64 7.0.2+dfsg-3 [13.9 MB] Get:18 http://deb.debian.org/debian forky/main amd64 libdrm-common all 2.4.134-3 [7860 B] Get:19 http://deb.debian.org/debian forky/main amd64 libdrm2 amd64 2.4.134-3 [38.5 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libdrm-amdgpu1 amd64 2.4.134-3 [23.3 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libnuma1 amd64 2.0.19-1+b2 [22.0 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libhsakmt1 amd64 6.4.3+dfsg-4 [66.1 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libhsa-runtime64-1 amd64 6.4.3+dfsg-4 [628 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libamdhip64-6 amd64 6.4.3-4+b1 [9384 kB] Get:26 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:27 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.4-1+b2 [19.5 kB] Get:28 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:29 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:32 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:33 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:34 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:35 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:36 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:39 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:40 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:41 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:42 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:43 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:44 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.22.0-1 [462 kB] Get:45 http://deb.debian.org/debian forky/main amd64 libevent-core-2.1-7t64 amd64 2.1.13-stable-1 [133 kB] Get:46 http://deb.debian.org/debian forky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.13-stable-1 [53.8 kB] Get:47 http://deb.debian.org/debian forky/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:48 http://deb.debian.org/debian forky/main amd64 librdmacm1t64 amd64 64.0-1 [76.5 kB] Get:49 http://deb.debian.org/debian forky/main amd64 libfabric1 amd64 2.1.0-1.1+b2 [716 kB] Get:50 http://deb.debian.org/debian forky/main amd64 libfmt10 amd64 10.1.1+ds1-4+b2 [126 kB] Get:51 http://deb.debian.org/debian forky/main amd64 libfuse3-4 amd64 3.18.3-1 [109 kB] Get:52 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 16.2.0-3 [151 kB] Get:53 http://deb.debian.org/debian forky/main amd64 libmuparserx4.0.12 amd64 4.0.12-2.1+b1 [202 kB] Get:54 http://deb.debian.org/debian forky/main amd64 libprotobuf32t64 amd64 3.21.12-17 [1089 kB] Get:55 http://deb.debian.org/debian forky/main amd64 libhwloc15 amd64 2.15.0-2 [178 kB] Get:56 http://deb.debian.org/debian forky/main amd64 libmunge2 amd64 0.5.18-1 [18.8 kB] Get:57 http://deb.debian.org/debian forky/main amd64 pci.ids all 0.0~2026.09.23-1 [287 kB] Get:58 http://deb.debian.org/debian forky/main amd64 libpciaccess0 amd64 0.19-2 [18.5 kB] Get:59 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:60 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:61 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:62 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:63 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:64 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:65 http://deb.debian.org/debian forky/main amd64 libxnvctrl0 amd64 535.171.04-1+b3 [14.1 kB] Get:66 http://deb.debian.org/debian forky/main amd64 libze1 amd64 1.32.0-1 [648 kB] Get:67 http://deb.debian.org/debian forky/main amd64 ocl-icd-libopencl1 amd64 2.3.4-1+b1 [42.8 kB] Get:68 http://deb.debian.org/debian forky/main amd64 libhwloc-plugins amd64 2.15.0-2 [22.4 kB] Get:69 http://deb.debian.org/debian forky/main amd64 libpmix2t64 amd64 6.0.0+really5.0.9-3+b2 [670 kB] Get:70 http://deb.debian.org/debian forky/main amd64 libibumad3 amd64 64.0-1 [29.6 kB] Get:71 http://deb.debian.org/debian forky/main amd64 libibmad5 amd64 64.0-1 [44.2 kB] Get:72 http://deb.debian.org/debian forky/main amd64 libucx0 amd64 1.22.0-1 [1064 kB] Get:73 http://deb.debian.org/debian forky/main amd64 libucc1 amd64 1.9.0-1 [379 kB] Get:74 http://deb.debian.org/debian forky/main amd64 libopenmpi40 amd64 5.0.10-1 [2018 kB] Get:75 http://deb.debian.org/debian forky/main amd64 openmpi-common all 5.0.10-1 [30.3 kB] Get:76 http://deb.debian.org/debian forky/main amd64 libprrte3 amd64 3.0.13-3 [451 kB] Get:77 http://deb.debian.org/debian forky/main amd64 libprrte-bin amd64 3.0.13-3 [51.9 kB] Get:78 http://deb.debian.org/debian forky/main amd64 openmpi-bin amd64 5.0.10-1 [154 kB] Get:79 http://deb.debian.org/debian forky/main amd64 mpi-default-bin amd64 1.20 [2720 B] Get:80 http://deb.debian.org/debian forky/main amd64 libgenomicsdb1 amd64 1.5.5-2 [1640 kB] Get:81 http://deb.debian.org/debian forky/main amd64 libgenomicsdb-jni amd64 1.5.5-2 [86.8 kB] Fetched 86.0 MB in 5s (16.4 MB/s) Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4950 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_262-1_amd64.deb ... Unpacking libsystemd-shared:amd64 (262-1) ... Setting up libsystemd-shared:amd64 (262-1) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4958 files and directories currently installed.) Preparing to unpack .../00-systemd_262-1_amd64.deb ... Unpacking systemd (262-1) ... Selecting previously unselected package libcbor0.10:amd64. Preparing to unpack .../01-libcbor0.10_0.10.2-2.2_amd64.deb ... Unpacking libcbor0.10:amd64 (0.10.2-2.2) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../02-libfido2-1_1.17.0-2_amd64.deb ... Unpacking libfido2-1:amd64 (1.17.0-2) ... Selecting previously unselected package openssh-common. Preparing to unpack .../03-openssh-common_1%3a10.5p1-1_amd64.deb ... Unpacking openssh-common (1:10.5p1-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../04-libedit2_3.1-20260512-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20260512-1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../05-openssh-client_1%3a10.5p1-1_amd64.deb ... Unpacking openssh-client (1:10.5p1-1) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../06-libnl-3-200_3.12.0-2+b1_amd64.deb ... Unpacking libnl-3-200:amd64 (3.12.0-2+b1) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../07-libnl-route-3-200_3.12.0-2+b1_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.12.0-2+b1) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../08-libibverbs1_64.0-1_amd64.deb ... Unpacking libibverbs1:amd64 (64.0-1) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../09-ibverbs-providers_64.0-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (64.0-1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../10-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../11-libxml2-16_2.15.4+dfsg-1_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.4+dfsg-1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../12-libz3-4_4.13.3-1.1_amd64.deb ... Unpacking libz3-4:amd64 (4.13.3-1.1) ... Selecting previously unselected package libllvm21:amd64. Preparing to unpack .../13-libllvm21_1%3a21.1.8-13_amd64.deb ... Unpacking libllvm21:amd64 (1:21.1.8-13) ... Selecting previously unselected package libclang-common-21-dev:amd64. Preparing to unpack .../14-libclang-common-21-dev_1%3a21.1.8-13_amd64.deb ... Unpacking libclang-common-21-dev:amd64 (1:21.1.8-13) ... Selecting previously unselected package libamd-comgr3:amd64. Preparing to unpack .../15-libamd-comgr3_7.0.2+dfsg-3_amd64.deb ... Unpacking libamd-comgr3:amd64 (7.0.2+dfsg-3) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../16-libdrm-common_2.4.134-3_all.deb ... Unpacking libdrm-common (2.4.134-3) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../17-libdrm2_2.4.134-3_amd64.deb ... Unpacking libdrm2:amd64 (2.4.134-3) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../18-libdrm-amdgpu1_2.4.134-3_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.134-3) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../19-libelf1t64_0.196-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.196-1) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../20-libnuma1_2.0.19-1+b2_amd64.deb ... Unpacking libnuma1:amd64 (2.0.19-1+b2) ... Selecting previously unselected package libhsakmt1:amd64. Preparing to unpack .../21-libhsakmt1_6.4.3+dfsg-4_amd64.deb ... Unpacking libhsakmt1:amd64 (6.4.3+dfsg-4) ... Selecting previously unselected package libhsa-runtime64-1:amd64. Preparing to unpack .../22-libhsa-runtime64-1_6.4.3+dfsg-4_amd64.deb ... Unpacking libhsa-runtime64-1:amd64 (6.4.3+dfsg-4) ... Selecting previously unselected package libamdhip64-6:amd64. Preparing to unpack .../23-libamdhip64-6_6.4.3-4+b1_amd64.deb ... Unpacking libamdhip64-6:amd64 (6.4.3-4+b1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../24-libbrotli1_1.2.0-4+b1_amd64.deb ... Unpacking libbrotli1:amd64 (1.2.0-4+b1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../25-libcom-err2_1.47.4-1+b2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.4-1+b2) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../26-libnghttp3-9_1.17.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.17.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../27-libngtcp2-16_1.24.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.24.0-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../28-libkrb5support0_1.22.1-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.22.1-3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../29-libk5crypto3_1.22.1-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.22.1-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../30-libkeyutils1_1.6.3-6+b2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6+b2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../31-libkrb5-3_1.22.1-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.22.1-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../32-libgssapi-krb5-2_1.22.1-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.22.1-3) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../33-libunistring5_1.4.2-1_amd64.deb ... Unpacking libunistring5:amd64 (1.4.2-1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../34-libidn2-0_2.3.8-5_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-5) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../35-libsasl2-modules-db_2.1.28+dfsg1-11_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../36-libsasl2-2_2.1.28+dfsg1-11_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../37-libldap2_2.6.14+dfsg-2_amd64.deb ... Unpacking libldap2:amd64 (2.6.14+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../38-libnghttp2-14_1.70.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.70.0-1) ... Selecting previously unselected package libngtcp2-crypto-ossl0:amd64. Preparing to unpack .../39-libngtcp2-crypto-ossl0_1.24.0-1_amd64.deb ... Unpacking libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../40-libpsl5t64_0.23.3-1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.23.3-1) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../41-libssh2-1t64_1.11.1-6_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-6) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../42-libcurl4t64_8.22.0-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.22.0-1) ... Selecting previously unselected package libevent-core-2.1-7t64:amd64. Preparing to unpack .../43-libevent-core-2.1-7t64_2.1.13-stable-1_amd64.deb ... Unpacking libevent-core-2.1-7t64:amd64 (2.1.13-stable-1) ... Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. Preparing to unpack .../44-libevent-pthreads-2.1-7t64_2.1.13-stable-1_amd64.deb ... Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.13-stable-1) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../45-libpsm2-2_11.2.185-2.1_amd64.deb ... Unpacking libpsm2-2 (11.2.185-2.1) ... Selecting previously unselected package librdmacm1t64:amd64. Preparing to unpack .../46-librdmacm1t64_64.0-1_amd64.deb ... Unpacking librdmacm1t64:amd64 (64.0-1) ... Selecting previously unselected package libfabric1:amd64. Preparing to unpack .../47-libfabric1_2.1.0-1.1+b2_amd64.deb ... Unpacking libfabric1:amd64 (2.1.0-1.1+b2) ... Selecting previously unselected package libfmt10:amd64. Preparing to unpack .../48-libfmt10_10.1.1+ds1-4+b2_amd64.deb ... Unpacking libfmt10:amd64 (10.1.1+ds1-4+b2) ... Selecting previously unselected package libfuse3-4:amd64. Preparing to unpack .../49-libfuse3-4_3.18.3-1_amd64.deb ... Unpacking libfuse3-4:amd64 (3.18.3-1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../50-libgomp1_16.2.0-3_amd64.deb ... Unpacking libgomp1:amd64 (16.2.0-3) ... Selecting previously unselected package libmuparserx4.0.12:amd64. Preparing to unpack .../51-libmuparserx4.0.12_4.0.12-2.1+b1_amd64.deb ... Unpacking libmuparserx4.0.12:amd64 (4.0.12-2.1+b1) ... Selecting previously unselected package libprotobuf32t64:amd64. Preparing to unpack .../52-libprotobuf32t64_3.21.12-17_amd64.deb ... Unpacking libprotobuf32t64:amd64 (3.21.12-17) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../53-libhwloc15_2.15.0-2_amd64.deb ... Unpacking libhwloc15:amd64 (2.15.0-2) ... Selecting previously unselected package libmunge2:amd64. Preparing to unpack .../54-libmunge2_0.5.18-1_amd64.deb ... Unpacking libmunge2:amd64 (0.5.18-1) ... Selecting previously unselected package pci.ids. Preparing to unpack .../55-pci.ids_0.0~2026.09.23-1_all.deb ... Unpacking pci.ids (0.0~2026.09.23-1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../56-libpciaccess0_0.19-2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.19-2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../57-libxau6_1%3a1.0.11-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1+b2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../58-libxdmcp6_1%3a1.1.5-2+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.5-2+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../59-libxcb1_1.17.0-2+b2_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../60-libx11-data_2%3a1.8.13-1_all.deb ... Unpacking libx11-data (2:1.8.13-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../61-libx11-6_2%3a1.8.13-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.13-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../62-libxext6_2%3a1.3.4-1+b4_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b4) ... Selecting previously unselected package libxnvctrl0:amd64. Preparing to unpack .../63-libxnvctrl0_535.171.04-1+b3_amd64.deb ... Unpacking libxnvctrl0:amd64 (535.171.04-1+b3) ... Selecting previously unselected package libze1:amd64. Preparing to unpack .../64-libze1_1.32.0-1_amd64.deb ... Unpacking libze1:amd64 (1.32.0-1) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../65-ocl-icd-libopencl1_2.3.4-1+b1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.4-1+b1) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../66-libhwloc-plugins_2.15.0-2_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.15.0-2) ... Selecting previously unselected package libpmix2t64:amd64. Preparing to unpack .../67-libpmix2t64_6.0.0+really5.0.9-3+b2_amd64.deb ... Unpacking libpmix2t64:amd64 (6.0.0+really5.0.9-3+b2) ... Selecting previously unselected package libibumad3:amd64. Preparing to unpack .../68-libibumad3_64.0-1_amd64.deb ... Unpacking libibumad3:amd64 (64.0-1) ... Selecting previously unselected package libibmad5:amd64. Preparing to unpack .../69-libibmad5_64.0-1_amd64.deb ... Unpacking libibmad5:amd64 (64.0-1) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../70-libucx0_1.22.0-1_amd64.deb ... Unpacking libucx0:amd64 (1.22.0-1) ... Selecting previously unselected package libucc1:amd64. Preparing to unpack .../71-libucc1_1.9.0-1_amd64.deb ... Unpacking libucc1:amd64 (1.9.0-1) ... Selecting previously unselected package libopenmpi40:amd64. Preparing to unpack .../72-libopenmpi40_5.0.10-1_amd64.deb ... Unpacking libopenmpi40:amd64 (5.0.10-1) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../73-openmpi-common_5.0.10-1_all.deb ... Unpacking openmpi-common (5.0.10-1) ... Selecting previously unselected package libprrte3:amd64. Preparing to unpack .../74-libprrte3_3.0.13-3_amd64.deb ... Unpacking libprrte3:amd64 (3.0.13-3) ... Selecting previously unselected package libprrte-bin. Preparing to unpack .../75-libprrte-bin_3.0.13-3_amd64.deb ... Unpacking libprrte-bin (3.0.13-3) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../76-openmpi-bin_5.0.10-1_amd64.deb ... Unpacking openmpi-bin (5.0.10-1) ... Selecting previously unselected package mpi-default-bin. Preparing to unpack .../77-mpi-default-bin_1.20_amd64.deb ... Unpacking mpi-default-bin (1.20) ... Selecting previously unselected package libgenomicsdb1. Preparing to unpack .../78-libgenomicsdb1_1.5.5-2_amd64.deb ... Unpacking libgenomicsdb1 (1.5.5-2) ... Selecting previously unselected package libgenomicsdb-jni. Preparing to unpack .../79-libgenomicsdb-jni_1.5.5-2_amd64.deb ... Unpacking libgenomicsdb-jni (1.5.5-2) ... Setting up libprotobuf32t64:amd64 (3.21.12-17) ... Setting up libxau6:amd64 (1:1.0.11-1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.5-2+b1) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up pci.ids (0.0~2026.09.23-1) ... Setting up libxcb1:amd64 (1.17.0-2+b2) ... Setting up libmuparserx4.0.12:amd64 (4.0.12-2.1+b1) ... Setting up libcbor0.10:amd64 (0.10.2-2.2) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1) ... Setting up libbrotli1:amd64 (1.2.0-4+b1) ... Setting up libedit2:amd64 (3.1-20260512-1) ... Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up libibumad3:amd64 (64.0-1) ... Setting up systemd (262-1) ... Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' → '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' → '/usr/lib/systemd/system/systemd-pstore.service'. Created symlink '/etc/systemd/system/autovt@.service' → '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' → '/usr/lib/systemd/system/getty@.service'. Initializing machine ID from random generator. Creating group 'lpadmin' with GID 999. Creating group 'systemd-journal' with GID 998. Creating group 'systemd-network' with GID 997. Creating user 'systemd-network' (systemd Network Management) with UID 997 and GID 997. [ESC][0;1;31m"/home" already exists and is not a directory.[ESC][0m Setting up libibmad5:amd64 (64.0-1) ... Setting up libcom-err2:amd64 (1.47.4-1+b2) ... Setting up libgomp1:amd64 (16.2.0-3) ... Setting up libze1:amd64 (1.32.0-1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Setting up libz3-4:amd64 (4.13.3-1.1) ... Setting up libmunge2:amd64 (0.5.18-1) ... Setting up libx11-data (2:1.8.13-1) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up libhwloc15:amd64 (2.15.0-2) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Setting up libnghttp3-9:amd64 (1.17.0-1) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libnuma1:amd64 (2.0.19-1+b2) ... Setting up ocl-icd-libopencl1:amd64 (2.3.4-1+b1) ... Setting up libnl-3-200:amd64 (3.12.0-2+b1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.10-1) ... Setting up libx11-6:amd64 (2:1.8.13-1) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.13-stable-1) ... Setting up libclang-common-21-dev:amd64 (1:21.1.8-13) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up libfuse3-4:amd64 (3.18.3-1) ... Setting up libfido2-1:amd64 (1.17.0-2) ... Setting up libdrm-common (2.4.134-3) ... Setting up libldap2:amd64 (2.6.14+dfsg-2) ... Setting up libfmt10:amd64 (10.1.1+ds1-4+b2) ... Setting up libpciaccess0:amd64 (0.19-2) ... Setting up openssh-common (1:10.5p1-1) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.13-stable-1) ... Setting up openssh-client (1:10.5p1-1) ... Creating group '_ssh' with GID 996. Created symlink '/etc/systemd/user/sockets.target.wants/ssh-agent.socket' → '/usr/lib/systemd/user/ssh-agent.socket'. Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libnl-route-3-200:amd64 (3.12.0-2+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b3) ... Setting up libllvm21:amd64 (1:21.1.8-13) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up libdrm2:amd64 (2.4.134-3) ... Setting up libamd-comgr3:amd64 (7.0.2+dfsg-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.134-3) ... Setting up libibverbs1:amd64 (64.0-1) ... Creating group 'rdma' with GID 995. Setting up ibverbs-providers:amd64 (64.0-1) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up libhwloc-plugins:amd64 (2.15.0-2) ... Setting up libpmix2t64:amd64 (6.0.0+really5.0.9-3+b2) ... Setting up librdmacm1t64:amd64 (64.0-1) ... Setting up libhsakmt1:amd64 (6.4.3+dfsg-4) ... Setting up libfabric1:amd64 (2.1.0-1.1+b2) ... Setting up libcurl4t64:amd64 (8.22.0-1) ... Setting up libprrte3:amd64 (3.0.13-3) ... Setting up libhsa-runtime64-1:amd64 (6.4.3+dfsg-4) ... Setting up libprrte-bin (3.0.13-3) ... Setting up libamdhip64-6:amd64 (6.4.3-4+b1) ... Setting up libucx0:amd64 (1.22.0-1) ... Setting up libucc1:amd64 (1.9.0-1) ... Setting up libopenmpi40:amd64 (5.0.10-1) ... Setting up openmpi-bin (5.0.10-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) does not exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up mpi-default-bin (1.20) ... Setting up libgenomicsdb1 (1.5.5-2) ... Setting up libgenomicsdb-jni (1.5.5-2) ... Processing triggers for libc-bin (2.43-6) ... 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', '-y', 'install', 'libgenomicsdb-jni'] 0m19.4s INFO: Running scripts post_install 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_install_exceptions'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_install_exceptions'] 0m19.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m20.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m20.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpf6twcajw to sid 0m20.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m20.0s INFO: Running scripts pre_distupgrade 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', 'update'] 0m23.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7735 kB] Fetched 18.7 MB in 3s (6488 kB/s) Reading package lists... 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', 'update'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', '-yf', 'dist-upgrade'] 0m34.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libfmt10 libhsakmt1 libmunge2 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libprrte3 The following NEW packages will be installed: libesmtp6 libfmt11 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libperl5.42 libprrte4 perl perl-modules-5.42 prrte-common The following packages will be upgraded: findutils ibverbs-providers libamdhip64-6 libaudit-common libaudit1 libc-bin libc-gconv-modules-extra libc6 libcurl4t64 libgenomicsdb-jni libgenomicsdb1 libhsa-runtime64-1 libibmad5 libibumad3 libibverbs1 libopenmpi40 libpcre2-8-0 libpmix2t64 libprrte-bin librdmacm1t64 libssl3t64 login.defs openmpi-bin openmpi-common openssh-client openssh-common openssl-provider-legacy passwd 28 upgraded, 10 newly installed, 1 to remove and 0 not upgraded. Need to get 37.2 MB of archives. After this operation, 59.8 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.11.0-3 [788 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.43-7 [621 kB] Get:5 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.6.5-1 [329 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.6.5-1 [2621 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libesmtp6 amd64 1.1.0-3.2+b2 [59.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libprrte-bin amd64 5.0.0~rc1-1 [115 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libpmix2t64 amd64 7.0.0~rc1-2 [839 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libprrte4 amd64 5.0.0~rc1-1 [725 kB] Get:11 http://deb.debian.org/debian sid/main amd64 prrte-common all 5.0.0~rc1-1 [60.1 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.48-3.1 [312 kB] Get:15 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.20.3-1 [224 kB] Get:16 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.20.3-1 [1298 kB] Get:17 http://deb.debian.org/debian sid/main amd64 openssh-client amd64 1:10.6p1-1 [735 kB] Get:18 http://deb.debian.org/debian sid/main amd64 openssh-common amd64 1:10.6p1-1 [505 kB] Get:19 http://deb.debian.org/debian sid/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:23 http://deb.debian.org/debian sid/main amd64 perl amd64 5.42.3-1 [266 kB] Get:24 http://deb.debian.org/debian sid/main amd64 ibverbs-providers amd64 65.0-1.1 [424 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libibverbs1 amd64 65.0-1.1 [68.2 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libhsa-runtime64-1 amd64 6.4.3+dfsg-5 [678 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libamdhip64-6 amd64 6.4.3-5 [9385 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.23.0~rc2-1 [467 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libfmt11 amd64 11.1.1+ds1-2 [92.0 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libgenomicsdb-jni amd64 1.5.5-3+b1 [103 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libgenomicsdb1 amd64 1.5.5-3+b1 [1682 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.2.0-3 [879 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libibumad3 amd64 65.0-1.1 [29.8 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libibmad5 amd64 65.0-1.1 [44.3 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libopenmpi40 amd64 6.0.0~rc2-2 [2880 kB] Get:36 http://deb.debian.org/debian sid/main amd64 librdmacm1t64 amd64 65.0-1.1 [79.2 kB] Get:37 http://deb.debian.org/debian sid/main amd64 openmpi-common all 6.0.0~rc2-2 [15.8 kB] Get:38 http://deb.debian.org/debian sid/main amd64 openmpi-bin amd64 6.0.0~rc2-2 [172 kB] Preconfiguring packages ... Fetched 37.2 MB in 4s (8869 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7374 files and directories currently installed.) Preparing to unpack .../findutils_4.11.0-3_amd64.deb ... Unpacking findutils (4.11.0-3) over (4.11.0-2) ... Setting up findutils (4.11.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7374 files and directories currently installed.) Preparing to unpack .../libc-gconv-modules-extra_2.43-7_amd64.deb ... Unpacking libc-gconv-modules-extra:amd64 (2.43-7) over (2.43-6) ... Setting up libc-gconv-modules-extra:amd64 (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7374 files and directories currently installed.) Preparing to unpack .../libc6_2.43-7_amd64.deb ... Unpacking libc6:amd64 (2.43-7) over (2.43-6) ... Setting up libc6:amd64 (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7374 files and directories currently installed.) Preparing to unpack .../libc-bin_2.43-7_amd64.deb ... Unpacking libc-bin (2.43-7) over (2.43-6) ... Setting up libc-bin (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7374 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.6.5-1_amd64.deb ... Unpacking openssl-provider-legacy (3.6.5-1) over (3.6.4-1) ... Setting up openssl-provider-legacy (3.6.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7374 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.6.5-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.6.5-1) over (3.6.4-1) ... Setting up libssl3t64:amd64 (3.6.5-1) ... Selecting previously unselected package libesmtp6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7374 files and directories currently installed.) Preparing to unpack .../libesmtp6_1.1.0-3.2+b2_amd64.deb ... Unpacking libesmtp6:amd64 (1.1.0-3.2+b2) ... Preparing to unpack .../libprrte-bin_5.0.0~rc1-1_amd64.deb ... Unpacking libprrte-bin (5.0.0~rc1-1) over (3.0.13-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7399 files and directories currently installed.) Removing libprrte3:amd64 (3.0.13-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7386 files and directories currently installed.) Preparing to unpack .../libpmix2t64_7.0.0~rc1-2_amd64.deb ... Unpacking libpmix2t64:amd64 (7.0.0~rc1-2) over (6.0.0+really5.0.9-3+b2) ... Selecting previously unselected package libprrte4:amd64. Preparing to unpack .../libprrte4_5.0.0~rc1-1_amd64.deb ... Unpacking libprrte4:amd64 (5.0.0~rc1-1) ... Selecting previously unselected package prrte-common. Preparing to unpack .../prrte-common_5.0.0~rc1-1_all.deb ... Unpacking prrte-common (5.0.0~rc1-1) ... Preparing to unpack .../libaudit-common_1%3a4.2.1-1_all.deb ... Unpacking libaudit-common (1:4.2.1-1) over (1:4.1.2-1) ... Setting up libaudit-common (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7484 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.2.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.2.1-1) over (1:4.1.2-1+b2) ... Setting up libaudit1:amd64 (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7483 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.48-3.1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.48-3.1) over (10.48-3) ... Setting up libpcre2-8-0:amd64 (10.48-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7483 files and directories currently installed.) Preparing to unpack .../00-login.defs_1%3a4.20.3-1_all.deb ... Unpacking login.defs (1:4.20.3-1) over (1:4.20.2-2) ... Preparing to unpack .../01-passwd_1%3a4.20.3-1_amd64.deb ... Unpacking passwd (1:4.20.3-1) over (1:4.20.2-2) ... Preparing to unpack .../02-openssh-client_1%3a10.6p1-1_amd64.deb ... Unpacking openssh-client (1:10.6p1-1) over (1:10.5p1-1) ... Preparing to unpack .../03-openssh-common_1%3a10.6p1-1_amd64.deb ... Unpacking openssh-common (1:10.6p1-1) over (1:10.5p1-1) ... Selecting previously unselected package perl-modules-5.42. Preparing to unpack .../04-perl-modules-5.42_5.42.3-1_all.deb ... Unpacking perl-modules-5.42 (5.42.3-1) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../05-libgdbm6t64_1.26-1+b2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.26-1+b2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. Preparing to unpack .../06-libgdbm-compat4t64_1.26-1+b2_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.26-1+b2) ... Selecting previously unselected package libperl5.42:amd64. Preparing to unpack .../07-libperl5.42_5.42.3-1_amd64.deb ... Unpacking libperl5.42:amd64 (5.42.3-1) ... Selecting previously unselected package perl. Preparing to unpack .../08-perl_5.42.3-1_amd64.deb ... Unpacking perl (5.42.3-1) ... Preparing to unpack .../09-ibverbs-providers_65.0-1.1_amd64.deb ... Unpacking ibverbs-providers:amd64 (65.0-1.1) over (64.0-1) ... Preparing to unpack .../10-libibverbs1_65.0-1.1_amd64.deb ... Unpacking libibverbs1:amd64 (65.0-1.1) over (64.0-1) ... Preparing to unpack .../11-libhsa-runtime64-1_6.4.3+dfsg-5_amd64.deb ... Unpacking libhsa-runtime64-1:amd64 (6.4.3+dfsg-5) over (6.4.3+dfsg-4) ... Preparing to unpack .../12-libamdhip64-6_6.4.3-5_amd64.deb ... Unpacking libamdhip64-6:amd64 (6.4.3-5) over (6.4.3-4+b1) ... Preparing to unpack .../13-libcurl4t64_8.23.0~rc2-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.23.0~rc2-1) over (8.22.0-1) ... Selecting previously unselected package libfmt11:amd64. Preparing to unpack .../14-libfmt11_11.1.1+ds1-2_amd64.deb ... Unpacking libfmt11:amd64 (11.1.1+ds1-2) ... Preparing to unpack .../15-libgenomicsdb-jni_1.5.5-3+b1_amd64.deb ... Unpacking libgenomicsdb-jni (1.5.5-3+b1) over (1.5.5-2) ... Preparing to unpack .../16-libgenomicsdb1_1.5.5-3+b1_amd64.deb ... Unpacking libgenomicsdb1 (1.5.5-3+b1) over (1.5.5-2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../17-libgfortran5_16.2.0-3_amd64.deb ... Unpacking libgfortran5:amd64 (16.2.0-3) ... Preparing to unpack .../18-libibumad3_65.0-1.1_amd64.deb ... Unpacking libibumad3:amd64 (65.0-1.1) over (64.0-1) ... Preparing to unpack .../19-libibmad5_65.0-1.1_amd64.deb ... Unpacking libibmad5:amd64 (65.0-1.1) over (64.0-1) ... Preparing to unpack .../20-libopenmpi40_6.0.0~rc2-2_amd64.deb ... Unpacking libopenmpi40:amd64 (6.0.0~rc2-2) over (5.0.10-1) ... Preparing to unpack .../21-librdmacm1t64_65.0-1.1_amd64.deb ... Unpacking librdmacm1t64:amd64 (65.0-1.1) over (64.0-1) ... Preparing to unpack .../22-openmpi-common_6.0.0~rc2-2_all.deb ... Unpacking openmpi-common (6.0.0~rc2-2) over (5.0.10-1) ... Preparing to unpack .../23-openmpi-bin_6.0.0~rc2-2_amd64.deb ... Unpacking openmpi-bin (6.0.0~rc2-2) over (5.0.10-1) ... Setting up libfmt11:amd64 (11.1.1+ds1-2) ... Setting up libibverbs1:amd64 (65.0-1.1) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up libcurl4t64:amd64 (8.23.0~rc2-1) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up ibverbs-providers:amd64 (65.0-1.1) ... Setting up openssh-common (1:10.6p1-1) ... Setting up openssh-client (1:10.6p1-1) ... Setting up login.defs (1:4.20.3-1) ... Setting up libibumad3:amd64 (65.0-1.1) ... Setting up libesmtp6:amd64 (1.1.0-3.2+b2) ... Setting up libibmad5:amd64 (65.0-1.1) ... Setting up libgenomicsdb1 (1.5.5-3+b1) ... Setting up libpmix2t64:amd64 (7.0.0~rc1-2) ... Setting up libgfortran5:amd64 (16.2.0-3) ... Setting up passwd (1:4.20.3-1) ... Setting up libhsa-runtime64-1:amd64 (6.4.3+dfsg-5) ... Setting up openmpi-common (6.0.0~rc2-2) ... Setting up librdmacm1t64:amd64 (65.0-1.1) ... Setting up perl-modules-5.42 (5.42.3-1) ... Setting up prrte-common (5.0.0~rc1-1) ... Setting up libopenmpi40:amd64 (6.0.0~rc2-2) ... Setting up libprrte4:amd64 (5.0.0~rc1-1) ... Setting up libperl5.42:amd64 (5.42.3-1) ... Setting up perl (5.42.3-1) ... Setting up libgenomicsdb-jni (1.5.5-3+b1) ... Setting up libamdhip64-6:amd64 (6.4.3-5) ... Setting up libprrte-bin (5.0.0~rc1-1) ... Setting up openmpi-bin (6.0.0~rc2-2) ... Installing new version of config file /etc/openmpi/openmpi-mca-params.conf ... Installing new version of config file /etc/openmpi/openmpi-totalview.tcl ... update-alternatives: warning: forcing reinstallation of alternative /usr/bin/mpirun.openmpi because link group mpirun is broken update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) does not exist update-alternatives: warning: skip creation of /usr/share/man/man1/mpirun.1.gz because associated file /usr/share/man/man1/mpirun.openmpi.1.gz (of link group mpirun) does not exist update-alternatives: warning: forcing reinstallation of alternative /usr/bin/mpicc.openmpi because link group mpi is broken update-alternatives: warning: skip creation of /usr/share/man/man1/mpiCC.1.gz because associated file /usr/share/man/man1/mpiCC.openmpi.1.gz (of link group mpi) does not exist update-alternatives: warning: skip creation of /usr/share/man/man1/mpic++.1.gz because associated file /usr/share/man/man1/mpic++.openmpi.1.gz (of link group mpi) does not exist update-alternatives: warning: skip creation of /usr/share/man/man1/mpicc.1.gz because associated file /usr/share/man/man1/mpicc.openmpi.1.gz (of link group mpi) does not exist update-alternatives: warning: skip creation of /usr/share/man/man1/mpicxx.1.gz because associated file /usr/share/man/man1/mpicxx.openmpi.1.gz (of link group mpi) does not exist update-alternatives: warning: skip creation of /usr/share/man/man1/mpif77.1.gz because associated file /usr/share/man/man1/mpif77.openmpi.1.gz (of link group mpi) does not exist update-alternatives: warning: skip creation of /usr/share/man/man1/mpif90.1.gz because associated file /usr/share/man/man1/mpif90.openmpi.1.gz (of link group mpi) does not exist update-alternatives: warning: skip creation of /usr/share/man/man1/mpifort.1.gz because associated file /usr/share/man/man1/mpifort.openmpi.1.gz (of link group mpi) does not exist Processing triggers for systemd (262-1) ... Processing triggers for libselinux1:amd64 (3.11-2.1) ... Processing triggers for libc-bin (2.43-7) ... 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', '-yf', 'dist-upgrade'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m35.2s DUMP: adaf6e12b161d88b724bf6e2989a00ce - 0m35.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m35.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'show', '--no-all-versions', 'libgenomicsdb-jni'] 0m35.4s DUMP: Package: libgenomicsdb-jni Source: genomicsdb (1.5.5-3) Version: 1.5.5-3+b1 Installed-Size: 402 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.32), libfmt11 (>= 11.1.1+ds1), libgcc-s1 (>= 3.0), libgenomicsdb1 (= 1.5.5-3+b1), libprotobuf32t64 (>= 3.21.12), libstdc++6 (>= 13.1) Description-en: sparse array storage library for genomics (Java native bindings) GenomicsDB is built on top of a htslib fork and an internal array storage system for importing, querying and transforming variant data. Variant data is sparse by nature (sparse relative to the whole genome) and using sparse array data stores is a perfect fit for storing such data. . The GenomicsDB stores variant data in a 2D array where: - Each column corresponds to a genomic position (chromosome + position); - Each row corresponds to a sample in a VCF (or CallSet in the GA4GH terminology); - Each cell contains data for a given sample/CallSet at a given position; data is stored in the form of cell attributes; - Cells are stored in column major order - this makes accessing cells with the same column index (i.e. data for a given genomic position over all samples) fast. - Variant interval/gVCF interval data is stored in a cell at the start of the interval. The END is stored as a cell attribute. For variant intervals (such as deletions and gVCF REF blocks), an additional cell is stored at the END value of the variant interval. When queried for a given genomic position, the query library performs an efficient sweep to determine all intervals that intersect with the queried position. . This package contains the Java native bindings. Description-md5: d734bbbeaf3aa7f51087b08e4ff6dc74 Homepage: https://www.genomicsdb.org/ Section: java Priority: optional Filename: pool/main/g/genomicsdb/libgenomicsdb-jni_1.5.5-3+b1_amd64.deb Size: 102616 MD5sum: 6fcf8d8303e3d0130d22eaaf6e88285c SHA256: a91b11fd485a97be3bc40ec257969d105eb52ee21cc2e43691c152db875e133b 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'show', '--no-all-versions', 'libgenomicsdb-jni'] 0m35.4s INFO: apt-cache knows about the following packages: libgenomicsdb-jni 0m35.4s INFO: Running scripts pre_install 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_database-server'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_database-server'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_exceptions'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_exceptions'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_extras'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_extras'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy'] 0m35.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy', 'libgenomicsdb-jni'] 0m35.6s DUMP: libgenomicsdb-jni: Installed: 1.5.5-3+b1 Candidate: 1.5.5-3+b1 Version table: *** 1.5.5-3+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy', 'libgenomicsdb-jni'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', '-y', 'install', 'libgenomicsdb-jni'] 0m36.1s DUMP: Reading package lists... Building dependency tree... Reading state information... libgenomicsdb-jni is already the newest version (1.5.5-3+b1). Solving dependencies... The following packages were automatically installed and are no longer required: libfmt10 libhsakmt1 libmunge2 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', '-y', 'install', 'libgenomicsdb-jni'] 0m36.1s INFO: Running scripts post_install 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_install_exceptions'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_install_exceptions'] 0m36.1s INFO: Running scripts post_distupgrade 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_distupgrade_exceptions'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_distupgrade_exceptions'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_distupgrade_zz_backports'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_distupgrade_zz_backports'] 0m36.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m36.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m36.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m37.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m37.5s INFO: Running scripts pre_install 0m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_database-server'] 0m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_database-server'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_exceptions'] 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_exceptions'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_extras'] 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_extras'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture'] 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy'] 0m37.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy', 'libgenomicsdb-jni'] 0m37.7s DUMP: libgenomicsdb-jni: Installed: 1.5.5-3+b1 Candidate: 1.5.5-3+b1 Version table: *** 1.5.5-3+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-cache', 'policy', 'libgenomicsdb-jni'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', '-y', 'install', 'libgenomicsdb-jni=1.5.5-3+b1'] 0m38.2s DUMP: Reading package lists... Building dependency tree... Reading state information... libgenomicsdb-jni is already the newest version (1.5.5-3+b1). Solving dependencies... The following packages were automatically installed and are no longer required: libfmt10 libhsakmt1 libmunge2 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', '-y', 'install', 'libgenomicsdb-jni=1.5.5-3+b1'] 0m38.2s INFO: Running scripts post_install 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_install_exceptions'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_install_exceptions'] 0m38.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m39.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m39.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', '-ac', '--ignore-obsolete'] 0m41.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', '-ac', '--ignore-obsolete'] 0m41.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.7s DUMP: 0.17.5+b5 0m41.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.7s INFO: Running adequate version 0.17.5+b5 now. 0m41.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'libgenomicsdb-jni'] 0m41.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'libgenomicsdb-jni'] 0m41.7s INFO: Running scripts pre_remove 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m44.1s DUMP: UNOWNED SYMLINK /usr/lib/x86_64-linux-gnu/libmpi_abi.so.1 -> libmpi_abi_openmpi.so.1.0.0 0m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_exceptions'] 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/pre_remove_exceptions'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m44.3s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed ibverbs-providers:amd64 ibverbs-providers 65.0-1.1 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libamd-comgr3:amd64 libamd-comgr3 7.0.2+dfsg-3 install ok installed libamdhip64-6:amd64 libamdhip64-6 6.4.3-5 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-4+b1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcbor0.10:amd64 libcbor0.10 0.10.2-2.2 install ok installed libclang-common-21-dev:amd64 libclang-common-21-dev 1:21.1.8-13 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1+b2 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.23.0~rc2-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.134-3 install ok installed libdrm-common libdrm-common 2.4.134-3 install ok installed libdrm2:amd64 libdrm2 2.4.134-3 install ok installed libedit2:amd64 libedit2 3.1-20260512-1 install ok installed libelf1t64:amd64 libelf1t64 0.196-1 install ok installed libesmtp6:amd64 libesmtp6 1.1.0-3.2+b2 install ok installed libevent-core-2.1-7t64:amd64 libevent-core-2.1-7t64 2.1.13-stable-1 install ok installed libevent-pthreads-2.1-7t64:amd64 libevent-pthreads-2.1-7t64 2.1.13-stable-1 install ok installed libfabric1:amd64 libfabric1 2.1.0-1.1+b2 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libfido2-1:amd64 libfido2-1 1.17.0-2 install ok installed libfmt10:amd64 libfmt10 10.1.1+ds1-4+b2 install ok installed libfmt11:amd64 libfmt11 11.1.1+ds1-2 install ok installed libfuse3-4:amd64 libfuse3-4 3.18.3-1 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgenomicsdb-jni libgenomicsdb-jni 1.5.5-3+b1 install ok installed libgenomicsdb1 libgenomicsdb1 1.5.5-3+b1 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgomp1:amd64 libgomp1 16.2.0-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhsa-runtime64-1:amd64 libhsa-runtime64-1 6.4.3+dfsg-5 install ok installed libhsakmt1:amd64 libhsakmt1 6.4.3+dfsg-4 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.15.0-2 install ok installed libhwloc15:amd64 libhwloc15 2.15.0-2 install ok installed libibmad5:amd64 libibmad5 65.0-1.1 install ok installed libibumad3:amd64 libibumad3 65.0-1.1 install ok installed libibverbs1:amd64 libibverbs1 65.0-1.1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed libldap2:amd64 libldap2 2.6.14+dfsg-2 install ok installed libllvm21:amd64 libllvm21 1:21.1.8-13 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libmunge2:amd64 libmunge2 0.5.18-1 install ok installed libmuparserx4.0.12:amd64 libmuparserx4.0.12 4.0.12-2.1+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.12.0-2+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.12.0-2+b1 install ok installed libnuma1:amd64 libnuma1 2.0.19-1+b2 install ok installed libopenmpi40:amd64 libopenmpi40 6.0.0~rc2-2 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpciaccess0:amd64 libpciaccess0 0.19-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libperl5.42:amd64 libperl5.42 5.42.3-1 install ok installed libpmix2t64:amd64 libpmix2t64 7.0.0~rc1-2 install ok installed libprotobuf32t64:amd64 libprotobuf32t64 3.21.12-17 install ok installed libprrte-bin libprrte-bin 5.0.0~rc1-1 install ok installed libprrte4:amd64 libprrte4 5.0.0~rc1-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.3-1 install ok installed libpsm2-2 libpsm2-2 11.2.185-2.1 install ok installed librdmacm1t64:amd64 librdmacm1t64 65.0-1.1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-6 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd-shared:amd64 libsystemd-shared 262-1 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libucc1:amd64 libucc1 1.9.0-1 install ok installed libucx0:amd64 libucx0 1.22.0-1 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxml2-16:amd64 libxml2-16 2.15.4+dfsg-1 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1+b3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1.1 install ok installed libze1:amd64 libze1 1.32.0-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed mpi-default-bin mpi-default-bin 1.20 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.4-1+b1 install ok installed openmpi-bin openmpi-bin 6.0.0~rc2-2 install ok installed openmpi-common openmpi-common 6.0.0~rc2-2 install ok installed openssh-client openssh-client 1:10.6p1-1 install ok installed openssh-common openssh-common 1:10.6p1-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed pci.ids pci.ids 0.0~2026.09.23-1 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed prrte-common prrte-common 5.0.0~rc1-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed systemd systemd 262-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', 'remove', '--allow-remove-essential', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfmt10:amd64', 'libfmt11:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgenomicsdb1', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libllvm21:amd64', 'libmunge2:amd64', 'libmuparserx4.0.12:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libprotobuf32t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1t64:amd64', 'libsystemd-shared:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'systemd', 'libgenomicsdb-jni'] 0m45.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ibverbs-providers libamd-comgr3 libamdhip64-6 libbrotli1 libcbor0.10 libclang-common-21-dev libcom-err2 libcurl4t64 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libesmtp6 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libffi8 libfido2-1 libfmt10 libfmt11 libfuse3-4 libgdbm-compat4t64 libgdbm6t64 libgenomicsdb-jni libgenomicsdb1 libgfortran5 libgomp1 libgssapi-krb5-2 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libllvm21 libmunge2 libmuparserx4.0.12 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libperl5.42 libpmix2t64 libprotobuf32t64 libprrte-bin libprrte4 libpsl5t64 libpsm2-2 librdmacm1t64 libsasl2-2 libsasl2-modules-db libssh2-1t64 libsystemd-shared libucc1 libucx0 libunistring5 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2-16 libxnvctrl0 libz3-4 libze1 mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-common pci.ids perl perl-modules-5.42 prrte-common systemd 0 upgraded, 0 newly installed, 90 to remove and 0 not upgraded. After this operation, 420 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9674 files and directories currently installed.) Removing libgenomicsdb-jni (1.5.5-3+b1) ... Removing libgenomicsdb1 (1.5.5-3+b1) ... Removing mpi-default-bin (1.20) ... Removing openmpi-bin (6.0.0~rc2-2) ... Removing libopenmpi40:amd64 (6.0.0~rc2-2) ... Removing libfabric1:amd64 (2.1.0-1.1+b2) ... Removing ibverbs-providers:amd64 (65.0-1.1) ... Removing libucc1:amd64 (1.9.0-1) ... Removing libucx0:amd64 (1.22.0-1) ... Removing libamdhip64-6:amd64 (6.4.3-5) ... Removing libamd-comgr3:amd64 (7.0.2+dfsg-3) ... Removing libcurl4t64:amd64 (8.23.0~rc2-1) ... Removing libbrotli1:amd64 (1.2.0-4+b1) ... Removing openssh-client (1:10.6p1-1) ... Removing openssh-common (1:10.6p1-1) ... Removing libfido2-1:amd64 (1.17.0-2) ... Removing libcbor0.10:amd64 (0.10.2-2.2) ... Removing libclang-common-21-dev:amd64 (1:21.1.8-13) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1+b2) ... Removing libhsakmt1:amd64 (6.4.3+dfsg-4) ... Removing libhsa-runtime64-1:amd64 (6.4.3+dfsg-5) ... Removing libdrm-amdgpu1:amd64 (2.4.134-3) ... Removing libdrm2:amd64 (2.4.134-3) ... Removing libdrm-common (2.4.134-3) ... Removing libllvm21:amd64 (1:21.1.8-13) ... Removing libedit2:amd64 (3.1-20260512-1) ... Removing libelf1t64:amd64 (0.196-1) ... Removing libprrte-bin (5.0.0~rc1-1) ... Removing libprrte4:amd64 (5.0.0~rc1-1) ... Removing libpmix2t64:amd64 (7.0.0~rc1-2) ... Removing libesmtp6:amd64 (1.1.0-3.2+b2) ... Removing libevent-pthreads-2.1-7t64:amd64 (2.1.13-stable-1) ... Removing libevent-core-2.1-7t64:amd64 (2.1.13-stable-1) ... Removing libffi8:amd64 (3.8.0-2) ... Removing libfmt10:amd64 (10.1.1+ds1-4+b2) ... Removing libfmt11:amd64 (11.1.1+ds1-2) ... Removing libfuse3-4:amd64 (3.18.3-1) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libgfortran5:amd64 (16.2.0-3) ... Removing libgomp1:amd64 (16.2.0-3) ... Removing libhwloc-plugins:amd64 (2.15.0-2) ... Removing libhwloc15:amd64 (2.15.0-2) ... Removing libibmad5:amd64 (65.0-1.1) ... Removing libibumad3:amd64 (65.0-1.1) ... Removing librdmacm1t64:amd64 (65.0-1.1) ... Removing libibverbs1:amd64 (65.0-1.1) ... Removing libpsl5t64:amd64 (0.23.3-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing libldap2:amd64 (2.6.14+dfsg-2) ... Removing libmunge2:amd64 (0.5.18-1) ... Removing libmuparserx4.0.12:amd64 (4.0.12-2.1+b1) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libnl-route-3-200:amd64 (3.12.0-2+b1) ... Removing libnl-3-200:amd64 (3.12.0-2+b1) ... Removing libpsm2-2 (11.2.185-2.1) ... Removing libnuma1:amd64 (2.0.19-1+b2) ... Removing libpciaccess0:amd64 (0.19-2) ... Removing libprotobuf32t64:amd64 (3.21.12-17) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libssh2-1t64:amd64 (1.11.1-6) ... Removing systemd (262-1) ... Removing libsystemd-shared:amd64 (262-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxnvctrl0:amd64 (535.171.04-1+b3) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Removing libxml2-16:amd64 (2.15.4+dfsg-1) ... Removing libz3-4:amd64 (4.13.3-1.1) ... Removing libze1:amd64 (1.32.0-1) ... Removing ocl-icd-libopencl1:amd64 (2.3.4-1+b1) ... Removing openmpi-common (6.0.0~rc2-2) ... Removing pci.ids (0.0~2026.09.23-1) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing prrte-common (5.0.0~rc1-1) ... Processing triggers for libc-bin (2.43-7) ... 0m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', 'remove', '--allow-remove-essential', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfmt10:amd64', 'libfmt11:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgenomicsdb1', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libllvm21:amd64', 'libmunge2:amd64', 'libmuparserx4.0.12:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libprotobuf32t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1t64:amd64', 'libsystemd-shared:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'systemd', 'libgenomicsdb-jni'] 0m45.7s INFO: Running scripts post_remove 0m45.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_remove_exceptions'] 0m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_remove_exceptions'] 0m45.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfmt10:amd64', 'libfmt11:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgenomicsdb1', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libllvm21:amd64', 'libmunge2:amd64', 'libmuparserx4.0.12:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libprotobuf32t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1t64:amd64', 'libsystemd-shared:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'systemd'] 0m45.9s DUMP: (Reading database ... 4991 files and directories currently installed.) Purging configuration files for ibverbs-providers:amd64 (65.0-1.1) ... dpkg: warning: ignoring request to remove libamd-comgr3 which is not installed dpkg: warning: ignoring request to remove libamdhip64-6 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libcbor0.10 which is not installed dpkg: warning: ignoring request to remove libclang-common-21-dev which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which is not installed dpkg: warning: ignoring request to remove libdrm-common which is not installed dpkg: warning: ignoring request to remove libdrm2 which is not installed dpkg: warning: ignoring request to remove libedit2 which is not installed dpkg: warning: ignoring request to remove libelf1t64 which is not installed dpkg: warning: ignoring request to remove libesmtp6 which is not installed dpkg: warning: ignoring request to remove libevent-core-2.1-7t64 which is not installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7t64 which is not installed dpkg: warning: ignoring request to remove libfabric1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfido2-1 which is not installed dpkg: warning: ignoring request to remove libfmt10 which is not installed dpkg: warning: ignoring request to remove libfmt11 which is not installed dpkg: warning: ignoring request to remove libfuse3-4 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgenomicsdb1 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... dpkg: warning: ignoring request to remove libhsa-runtime64-1 which is not installed dpkg: warning: ignoring request to remove libhsakmt1 which is not installed dpkg: warning: ignoring request to remove libhwloc-plugins which is not installed dpkg: warning: ignoring request to remove libhwloc15 which is not installed dpkg: warning: ignoring request to remove libibmad5 which is not installed dpkg: warning: ignoring request to remove libibumad3 which is not installed dpkg: warning: ignoring request to remove libibverbs1 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove libllvm21 which is not installed dpkg: warning: ignoring request to remove libmunge2 which is not installed dpkg: warning: ignoring request to remove libmuparserx4.0.12 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed Purging configuration files for libnl-3-200:amd64 (3.12.0-2+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which is not installed dpkg: warning: ignoring request to remove libnuma1 which is not installed dpkg: warning: ignoring request to remove libopenmpi40 which is not installed dpkg: warning: ignoring request to remove libpciaccess0 which is not installed dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpmix2t64 which is not installed dpkg: warning: ignoring request to remove libprotobuf32t64 which is not installed Purging configuration files for libprrte-bin (5.0.0~rc1-1) ... dpkg: warning: ignoring request to remove libprrte4 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpsm2-2 which is not installed dpkg: warning: ignoring request to remove librdmacm1t64 which is not installed dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libsystemd-shared which is not installed dpkg: warning: ignoring request to remove libucc1 which is not installed dpkg: warning: ignoring request to remove libucx0 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxnvctrl0 which is not installed dpkg: warning: ignoring request to remove libz3-4 which is not installed dpkg: warning: ignoring request to remove libze1 which is not installed dpkg: warning: ignoring request to remove mpi-default-bin which is not installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which is not installed Purging configuration files for openmpi-bin (6.0.0~rc2-2) ... dpkg: warning: ignoring request to remove openmpi-common which is not installed Purging configuration files for openssh-client (1:10.6p1-1) ... dpkg: warning: ignoring request to remove openssh-common which is not installed dpkg: warning: ignoring request to remove pci.ids which is not installed Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed dpkg: warning: ignoring request to remove prrte-common which is not installed Purging configuration files for systemd (262-1) ... 0m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfmt10:amd64', 'libfmt11:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgenomicsdb1', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libllvm21:amd64', 'libmunge2:amd64', 'libmuparserx4.0.12:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libprotobuf32t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1t64:amd64', 'libsystemd-shared:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'systemd'] 0m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg', '--purge', 'libgenomicsdb-jni'] 0m45.9s DUMP: dpkg: warning: ignoring request to remove libgenomicsdb-jni which is not installed 0m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg', '--purge', 'libgenomicsdb-jni'] 0m45.9s INFO: Running scripts post_purge 0m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_purge_exceptions'] 0m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_purge_exceptions'] 0m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg', '--purge', '--pending'] 0m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg', '--purge', '--pending'] 0m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg', '--remove', '--pending'] 0m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg', '--remove', '--pending'] 0m45.9s INFO: Running scripts post_test 0m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_test_exceptions'] 0m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'tmp/scripts/post_test_exceptions'] 0m45.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m46.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg-divert', '--list'] 0m46.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'dpkg-divert', '--list'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', 'clean'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf6twcajw', 'apt-get', 'clean'] 0m46.4s DEBUG: Recording chroot state 0m47.2s INFO: Warning: Package purging left files on system: /etc/default/locale -> ../locale.conf not owned /etc/vconsole.conf -> default/keyboard not owned /root/.ssh/ not owned /var/cache/private/ not owned /var/lib/private/ not owned /var/log/private/ not owned 0m47.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/shm'] 0m47.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/shm'] 0m47.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/console'] 0m47.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/console'] 0m47.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/ptmx'] 0m47.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/ptmx'] 0m47.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/pts'] 0m47.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/dev/pts'] 0m47.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/proc'] 0m47.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf6twcajw/proc'] 0m47.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m47.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpf6twcajw'] 0m47.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpf6twcajw 0m47.9s INFO: PASS: Upgrading between Debian distributions. 0m47.9s INFO: PASS: All tests. 0m47.9s INFO: piuparts run ends. ret=0 End: 2026-10-07 16:00:42 GMT