Start: 2024-10-30 04:09:40 GMT [testing] Package: libhmsbeagle-java Source: libhmsbeagle (3.1.2+dfsg-13) Version: 3.1.2+dfsg-13+b1 Installed-Size: 37 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libhmsbeagle1v5 Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics (java) Multi-Arch: same Homepage: https://github.com/beagle-dev/beagle-lib Description-md5: 19e3721dbbb7bb8a6b2e6402430b80ec Section: java Priority: optional Filename: pool/main/libh/libhmsbeagle/libhmsbeagle-java_3.1.2+dfsg-13+b1_amd64.deb Size: 26980 MD5sum: 8039f6ef34b90429ab2ed82bacd9135b SHA256: 9f7ce0c916c3769587d318e63f5a315efd40492b7cd5b54e1110fb8dc87dd79c [sid] Package: libhmsbeagle-java Source: libhmsbeagle (3.1.2+dfsg-13) Version: 3.1.2+dfsg-13+b2 Installed-Size: 37 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libhmsbeagle1v5 Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics (java) Multi-Arch: same Homepage: https://github.com/beagle-dev/beagle-lib Description-md5: 19e3721dbbb7bb8a6b2e6402430b80ec Section: java Priority: optional Filename: pool/main/libh/libhmsbeagle/libhmsbeagle-java_3.1.2+dfsg-13+b2_amd64.deb Size: 27100 MD5sum: 35a60c9cc1d7f72965996585cf0daa20 SHA256: df8302c3ee4cc43c7cefc69595182d0e7c667dc3e094b87c1fd0b977d5e8857b Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libhmsbeagle-java=3.1.2+dfsg-13+b2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libhmsbeagle-java=3.1.2+dfsg-13+b2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp7lfpho3n 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp7lfpho3n 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp7lfpho3n/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', 'update'] 0m2.5s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [172 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9350 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6243 kB] Fetched 15.8 MB in 1s (12.6 MB/s) Reading package lists... 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', 'update'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', '-yf', 'dist-upgrade'] 0m5.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt base-passwd e2fsprogs libacl1 libapt-pkg6.0t64 libcom-err2 libdebconfclient0 libext2fs2t64 liblzma5 libss2 logsave sysvinit-utils 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3730 kB of archives. After this operation, 45.1 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 liblzma5 amd64 5.6.3-1 [272 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libapt-pkg6.0t64 amd64 2.9.10 [1045 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libdebconfclient0 amd64 0.272+b1 [10.3 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 base-passwd amd64 3.6.5 [53.1 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 apt amd64 2.9.10 [1413 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.11-1 [33.1 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 logsave amd64 1.47.1-1+b1 [23.0 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libext2fs2t64 amd64 1.47.1-1+b1 [211 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 e2fsprogs amd64 1.47.1-1+b1 [585 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libss2 amd64 1.47.1-1+b1 [27.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3730 kB in 0s (64.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5139 files and directories currently installed.) Preparing to unpack .../liblzma5_5.6.3-1_amd64.deb ... Unpacking liblzma5:amd64 (5.6.3-1) over (5.6.2-2) ... Setting up liblzma5:amd64 (5.6.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5139 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.10_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.10) over (2.9.8) ... Setting up libapt-pkg6.0t64:amd64 (2.9.10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5139 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.272+b1_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.272+b1) over (0.272) ... Setting up libdebconfclient0:amd64 (0.272+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5140 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.5_amd64.deb ... Unpacking base-passwd (3.6.5) over (3.6.4) ... Setting up base-passwd (3.6.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5143 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.10_amd64.deb ... Unpacking apt (2.9.10) over (2.9.8) ... Setting up apt (2.9.10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5143 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.11-1_amd64.deb ... Unpacking sysvinit-utils (3.11-1) over (3.10-3) ... Setting up sysvinit-utils (3.11-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5143 files and directories currently installed.) Preparing to unpack .../logsave_1.47.1-1+b1_amd64.deb ... Unpacking logsave (1.47.1-1+b1) over (1.47.1-1) ... Preparing to unpack .../libext2fs2t64_1.47.1-1+b1_amd64.deb ... Leaving 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.1-1+b1) over (1.47.1-1) ... Setting up libext2fs2t64:amd64 (1.47.1-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5145 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.1-1+b1_amd64.deb ... Unpacking e2fsprogs (1.47.1-1+b1) over (1.47.1-1) ... Preparing to unpack .../libacl1_2.3.2-2+b1_amd64.deb ... Unpacking libacl1:amd64 (2.3.2-2+b1) over (2.3.2-2) ... Setting up libacl1:amd64 (2.3.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5147 files and directories currently installed.) Preparing to unpack .../libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) over (1.47.1-1) ... Preparing to unpack .../libss2_1.47.1-1+b1_amd64.deb ... Unpacking libss2:amd64 (1.47.1-1+b1) over (1.47.1-1) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up libss2:amd64 (1.47.1-1+b1) ... Setting up logsave (1.47.1-1+b1) ... Setting up e2fsprogs (1.47.1-1+b1) ... Processing triggers for libc-bin (2.40-3) ... 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', '-yf', 'dist-upgrade'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s DUMP: cab96d2d1756c9005fc69ee9491da3cd - 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s INFO: Running scripts post_setup 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_dummy_users'] 0m7.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_dummy_users'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_forbid_home'] 0m7.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_forbid_home'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_minimize'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_minimize'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_zz_backports'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_setup_zz_backports'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.4s DUMP: install ok installed apt apt 2.9.10 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.10 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:3.1.2-4 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-4+b1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-3 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272+b1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 256.7-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.7-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.40.0-6 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m7.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m7.8s INFO: Running scripts is_testable 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/is_testable_uninstallable'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/is_testable_uninstallable'] 0m7.8s INFO: Running scripts pre_test 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_test_exceptions'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_test_exceptions'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_test_root_password'] 0m7.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_test_root_password'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'show', '--no-all-versions', 'libhmsbeagle-java'] 0m8.1s DUMP: Package: libhmsbeagle-java Source: libhmsbeagle (3.1.2+dfsg-13) Version: 3.1.2+dfsg-13+b1 Installed-Size: 37 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libhmsbeagle1v5 Description-en: High-performance lib for Bayesian and Maximum Likelihood phylogenetics (java) BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It can make use of highly-parallel processors such as those in graphics cards (GPUs) found in many PCs. . The project involves an open API and fast implementations of a library for evaluating phylogenetic likelihoods (continuous time Markov processes) of biomolecular sequence evolution. . The aim is to provide high performance evaluation 'services' to a wide range of phylogenetic software, both Bayesian samplers and Maximum Likelihood optimizers. This allows these packages to make use of implementations that make use of optimized hardware such as graphics processing units. . This package contains the Java interface. Description-md5: 19e3721dbbb7bb8a6b2e6402430b80ec Multi-Arch: same Homepage: https://github.com/beagle-dev/beagle-lib Section: java Priority: optional Filename: pool/main/libh/libhmsbeagle/libhmsbeagle-java_3.1.2+dfsg-13+b1_amd64.deb Size: 26980 MD5sum: 8039f6ef34b90429ab2ed82bacd9135b SHA256: 9f7ce0c916c3769587d318e63f5a315efd40492b7cd5b54e1110fb8dc87dd79c 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'show', '--no-all-versions', 'libhmsbeagle-java'] 0m8.1s INFO: apt-cache knows about the following packages: libhmsbeagle-java 0m8.1s INFO: Running scripts pre_install 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_database-server'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_database-server'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_exceptions'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_exceptions'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_extras'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_extras'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy'] 0m8.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy', 'libhmsbeagle-java'] 0m8.2s DUMP: libhmsbeagle-java: Installed: (none) Candidate: 3.1.2+dfsg-13+b1 Version table: 3.1.2+dfsg-13+b1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy', 'libhmsbeagle-java'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', '-y', 'install', 'libhmsbeagle-java'] 0m14.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libclang-common-19-dev libclang-cpp19 libclc-19 libclc-19-dev libdrm-amdgpu1 libdrm-common libdrm-radeon1 libdrm2 libedit2 libelf1t64 libexpat1 libhmsbeagle1v5 libicu72 libllvm19 libllvmspirvlib19.1 libxml2 libz3-4 mesa-opencl-icd ocl-icd-libopencl1 Recommended packages: libclang-rt-19-dev The following NEW packages will be installed: libclang-common-19-dev libclang-cpp19 libclc-19 libclc-19-dev libdrm-amdgpu1 libdrm-common libdrm-radeon1 libdrm2 libedit2 libelf1t64 libexpat1 libhmsbeagle-java libhmsbeagle1v5 libicu72 libllvm19 libllvmspirvlib19.1 libxml2 libz3-4 mesa-opencl-icd ocl-icd-libopencl1 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. Need to get 93.6 MB of archives. After this operation, 496 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libclang-common-19-dev amd64 1:19.1.2-1 [739 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.2-1 [26.0 MB] Get:7 http://deb.debian.org/debian trixie/main amd64 libclang-cpp19 amd64 1:19.1.2-1 [13.2 MB] Get:8 http://deb.debian.org/debian trixie/main amd64 libclc-19-dev all 1:19.1.2-1 [65.0 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libclc-19 all 1:19.1.2-1 [12.1 MB] Get:10 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get:11 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libllvmspirvlib19.1 amd64 19.1.0-1 [891 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 mesa-opencl-icd amd64 24.2.4-1 [22.5 MB] Get:19 http://deb.debian.org/debian trixie/main amd64 libhmsbeagle1v5 amd64 3.1.2+dfsg-13+b1 [139 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libhmsbeagle-java amd64 3.1.2+dfsg-13+b1 [27.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 93.6 MB in 0s (246 MB/s) Selecting previously unselected package libclang-common-19-dev:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5153 files and directories currently installed.) Preparing to unpack .../00-libclang-common-19-dev_1%3a19.1.2-1_amd64.deb ... Unpacking libclang-common-19-dev:amd64 (1:19.1.2-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20240808-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20240808-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../02-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../03-libxml2_2.12.7+dfsg+really2.9.14-0.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../04-libz3-4_4.8.12-3.1+b2_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-3.1+b2) ... Selecting previously unselected package libllvm19:amd64. Preparing to unpack .../05-libllvm19_1%3a19.1.2-1_amd64.deb ... Unpacking libllvm19:amd64 (1:19.1.2-1) ... Selecting previously unselected package libclang-cpp19. Preparing to unpack .../06-libclang-cpp19_1%3a19.1.2-1_amd64.deb ... Unpacking libclang-cpp19 (1:19.1.2-1) ... Selecting previously unselected package libclc-19-dev. Preparing to unpack .../07-libclc-19-dev_1%3a19.1.2-1_all.deb ... Unpacking libclc-19-dev (1:19.1.2-1) ... Selecting previously unselected package libclc-19. Preparing to unpack .../08-libclc-19_1%3a19.1.2-1_all.deb ... Unpacking libclc-19 (1:19.1.2-1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../09-libdrm-common_2.4.123-1_all.deb ... Unpacking libdrm-common (2.4.123-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../10-libdrm2_2.4.123-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.123-1) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../11-libdrm-amdgpu1_2.4.123-1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... Selecting previously unselected package libdrm-radeon1:amd64. Preparing to unpack .../12-libdrm-radeon1_2.4.123-1_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../13-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../14-libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../15-ocl-icd-libopencl1_2.3.2-1+b1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Selecting previously unselected package libllvmspirvlib19.1:amd64. Preparing to unpack .../16-libllvmspirvlib19.1_19.1.0-1_amd64.deb ... Unpacking libllvmspirvlib19.1:amd64 (19.1.0-1) ... Selecting previously unselected package mesa-opencl-icd:amd64. Preparing to unpack .../17-mesa-opencl-icd_24.2.4-1_amd64.deb ... Unpacking mesa-opencl-icd:amd64 (24.2.4-1) ... Selecting previously unselected package libhmsbeagle1v5:amd64. Preparing to unpack .../18-libhmsbeagle1v5_3.1.2+dfsg-13+b1_amd64.deb ... Unpacking libhmsbeagle1v5:amd64 (3.1.2+dfsg-13+b1) ... Selecting previously unselected package libhmsbeagle-java:amd64. Preparing to unpack .../19-libhmsbeagle-java_3.1.2+dfsg-13+b1_amd64.deb ... Unpacking libhmsbeagle-java:amd64 (3.1.2+dfsg-13+b1) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up libicu72:amd64 (72.1-5) ... Setting up libclang-common-19-dev:amd64 (1:19.1.2-1) ... Setting up libedit2:amd64 (3.1-20240808-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libclc-19-dev (1:19.1.2-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libllvm19:amd64 (1:19.1.2-1) ... Setting up libclc-19 (1:19.1.2-1) ... Setting up libllvmspirvlib19.1:amd64 (19.1.0-1) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libclang-cpp19 (1:19.1.2-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libdrm-radeon1:amd64 (2.4.123-1) ... Setting up mesa-opencl-icd:amd64 (24.2.4-1) ... Setting up libhmsbeagle1v5:amd64 (3.1.2+dfsg-13+b1) ... Setting up libhmsbeagle-java:amd64 (3.1.2+dfsg-13+b1) ... Processing triggers for libc-bin (2.40-3) ... 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', '-y', 'install', 'libhmsbeagle-java'] 0m14.0s INFO: Running scripts post_install 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_install_exceptions'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_install_exceptions'] 0m14.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m14.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m14.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp7lfpho3n to sid 0m14.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m14.3s INFO: Running scripts pre_distupgrade 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', 'update'] 0m17.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7332 kB] Fetched 17.6 MB in 2s (7182 kB/s) Reading package lists... 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', 'update'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', '-yf', 'dist-upgrade'] 0m26.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: coreutils gcc-14-base gpgv libaudit-common libaudit1 libcap2 libclang-common-19-dev libclang-cpp19 libclc-19 libclc-19-dev libexpat1 libgcc-s1 libgmp10 libgnutls30t64 libhmsbeagle-java libhmsbeagle1v5 libhogweed6t64 libicu72 libidn2-0 libllvm19 liblz4-1 liblzma5 libmd0 libnettle8t64 libp11-kit0 libpam-modules libpam-modules-bin libpam0g libpcre2-8-0 libseccomp2 libssl3t64 libstdc++6 libtasn1-6 libtinfo6 libunistring5 libxxhash0 libz3-4 libzstd1 ncurses-bin ocl-icd-libopencl1 openssl-provider-legacy tzdata zlib1g 43 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 82.4 MB of archives. After this operation, 1085 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.5-1+b1 [2922 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.5-2+b1 [434 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.0.1-1 [12.3 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.0.1-1 [54.5 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.3-7+b1 [68.3 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-7+b1 [54.1 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-7+b1 [267 kB] Get:8 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.45-1 [218 kB] Get:10 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-7 [46.9 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-7 [713 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-7 [72.8 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5+b1 [27.8 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b2 [560 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10-1+b1 [305 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10-1+b1 [335 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.2-1+b1 [429 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-2+b1 [429 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.6-2+b1 [1446 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b2 [26.6 kB] Get:23 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-3+b1 [60.3 kB] Get:24 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.3-1+b1 [272 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b2 [266 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1+b2 [47.4 kB] Get:28 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.3.2-2 [298 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.6+dfsg-1+b1 [300 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.3.2-2 [2271 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.5-2+b1 [344 kB] Get:32 http://deb.debian.org/debian sid/main amd64 tzdata all 2024b-3 [255 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libclang-common-19-dev amd64 1:19.1.2-2 [739 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1+b3 [7772 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libclang-cpp19 amd64 1:19.1.2-2 [13.2 MB] Get:36 http://deb.debian.org/debian sid/main amd64 libllvm19 amd64 1:19.1.2-2 [26.0 MB] Get:37 http://deb.debian.org/debian sid/main amd64 libclc-19 all 1:19.1.2-2 [12.1 MB] Get:38 http://deb.debian.org/debian sid/main amd64 libclc-19-dev all 1:19.1.2-2 [65.1 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.3-2 [105 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libhmsbeagle1v5 amd64 3.1.2+dfsg-13+b2 [141 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libhmsbeagle-java amd64 3.1.2+dfsg-13+b2 [27.1 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get:43 http://deb.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.4 MB in 0s (213 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6028 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.5-2+b1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-2+b1) over (0.25.5-2) ... Setting up libp11-kit0:amd64 (0.25.5-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6029 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3+b3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b3) over (4.19.0-3+b2) ... Setting up libtasn1-6:amd64 (4.19.0-3+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6029 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.6-2+b1_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.6-2+b1) over (3.8.6-2) ... Setting up libgnutls30t64:amd64 (3.8.6-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6030 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b2_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b2) over (0.8.2-2+b1) ... Setting up libxxhash0:amd64 (0.8.2-2+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6030 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-3+b1_amd64.deb ... Unpacking liblz4-1:amd64 (1.9.4-3+b1) over (1.9.4-3) ... Setting up liblz4-1:amd64 (1.9.4-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6031 files and directories currently installed.) Preparing to unpack .../liblzma5_5.6.3-1+b1_amd64.deb ... Unpacking liblzma5:amd64 (5.6.3-1+b1) over (5.6.3-1) ... Setting up liblzma5:amd64 (5.6.3-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6032 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2+b1_amd64.deb ... Unpacking libmd0:amd64 (1.1.0-2+b1) over (1.1.0-2) ... Setting up libmd0:amd64 (1.1.0-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6033 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-4+b2_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.42-4+b2) over (10.42-4+b1) ... Setting up libpcre2-8-0:amd64 (10.42-4+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6033 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1+b2_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1+b2) over (2.5.5-1+b1) ... Setting up libseccomp2:amd64 (2.5.5-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6033 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.3.2-2_amd64.deb ... Unpacking openssl-provider-legacy (3.3.2-2) over (3.3.2-1) ... Setting up openssl-provider-legacy (3.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6033 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.6+dfsg-1+b1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.6+dfsg-1+b1) over (1.5.6+dfsg-1) ... Setting up libzstd1:amd64 (1.5.6+dfsg-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6034 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.3.2-2_amd64.deb ... Unpacking libssl3t64:amd64 (3.3.2-2) over (3.3.2-1) ... Setting up libssl3t64:amd64 (3.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6034 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.5-2+b1_amd64.deb ... Unpacking libtinfo6:amd64 (6.5-2+b1) over (6.5-2) ... Setting up libtinfo6:amd64 (6.5-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6035 files and directories currently installed.) Preparing to unpack .../00-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) over (2024a-4) ... Preparing to unpack .../01-libclang-common-19-dev_1%3a19.1.2-2_amd64.deb ... Unpacking libclang-common-19-dev:amd64 (1:19.1.2-2) over (1:19.1.2-1) ... Preparing to unpack .../02-libz3-4_4.8.12-3.1+b3_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-3.1+b3) over (4.8.12-3.1+b2) ... Preparing to unpack .../03-libclang-cpp19_1%3a19.1.2-2_amd64.deb ... Unpacking libclang-cpp19 (1:19.1.2-2) over (1:19.1.2-1) ... Preparing to unpack .../04-libllvm19_1%3a19.1.2-2_amd64.deb ... Unpacking libllvm19:amd64 (1:19.1.2-2) over (1:19.1.2-1) ... Preparing to unpack .../05-libclc-19_1%3a19.1.2-2_all.deb ... Unpacking libclc-19 (1:19.1.2-2) over (1:19.1.2-1) ... Preparing to unpack .../06-libclc-19-dev_1%3a19.1.2-2_all.deb ... Unpacking libclc-19-dev (1:19.1.2-2) over (1:19.1.2-1) ... Preparing to unpack .../07-libexpat1_2.6.3-2_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-2) over (2.6.3-1) ... Preparing to unpack .../08-libhmsbeagle1v5_3.1.2+dfsg-13+b2_amd64.deb ... Unpacking libhmsbeagle1v5:amd64 (3.1.2+dfsg-13+b2) over (3.1.2+dfsg-13+b1) ... Preparing to unpack .../09-libhmsbeagle-java_3.1.2+dfsg-13+b2_amd64.deb ... Unpacking libhmsbeagle-java:amd64 (3.1.2+dfsg-13+b2) over (3.1.2+dfsg-13+b1) ... Preparing to unpack .../10-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) over (72.1-5) ... Preparing to unpack .../11-ocl-icd-libopencl1_2.3.2-1+b2_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1+b2) over (2.3.2-1+b1) ... Setting up libexpat1:amd64 (2.6.3-2) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up libclang-common-19-dev:amd64 (1:19.1.2-2) ... Setting up libhmsbeagle1v5:amd64 (3.1.2+dfsg-13+b2) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Oct 30 04:10:06 UTC 2024. Universal Time is now: Wed Oct 30 04:10:06 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libz3-4:amd64 (4.8.12-3.1+b3) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Setting up libclc-19-dev (1:19.1.2-2) ... Setting up libllvm19:amd64 (1:19.1.2-2) ... Setting up libclc-19 (1:19.1.2-2) ... Setting up libhmsbeagle-java:amd64 (3.1.2+dfsg-13+b2) ... Setting up libclang-cpp19 (1:19.1.2-2) ... Processing triggers for libc-bin (2.40-3) ... 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', '-yf', 'dist-upgrade'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.8s DUMP: cda3f16ee835e74ad9ae552ededb5254 - 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'show', '--no-all-versions', 'libhmsbeagle-java'] 0m27.1s DUMP: Package: libhmsbeagle-java Source: libhmsbeagle (3.1.2+dfsg-13) Version: 3.1.2+dfsg-13+b2 Installed-Size: 37 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libhmsbeagle1v5 Description-en: High-performance lib for Bayesian and Maximum Likelihood phylogenetics (java) BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It can make use of highly-parallel processors such as those in graphics cards (GPUs) found in many PCs. . The project involves an open API and fast implementations of a library for evaluating phylogenetic likelihoods (continuous time Markov processes) of biomolecular sequence evolution. . The aim is to provide high performance evaluation 'services' to a wide range of phylogenetic software, both Bayesian samplers and Maximum Likelihood optimizers. This allows these packages to make use of implementations that make use of optimized hardware such as graphics processing units. . This package contains the Java interface. Description-md5: 19e3721dbbb7bb8a6b2e6402430b80ec Multi-Arch: same Homepage: https://github.com/beagle-dev/beagle-lib Section: java Priority: optional Filename: pool/main/libh/libhmsbeagle/libhmsbeagle-java_3.1.2+dfsg-13+b2_amd64.deb Size: 27100 MD5sum: 35a60c9cc1d7f72965996585cf0daa20 SHA256: df8302c3ee4cc43c7cefc69595182d0e7c667dc3e094b87c1fd0b977d5e8857b 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'show', '--no-all-versions', 'libhmsbeagle-java'] 0m27.1s INFO: apt-cache knows about the following packages: libhmsbeagle-java 0m27.1s INFO: Running scripts pre_install 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_database-server'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_database-server'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_exceptions'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_exceptions'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_extras'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_extras'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy'] 0m27.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy', 'libhmsbeagle-java'] 0m27.3s DUMP: libhmsbeagle-java: Installed: 3.1.2+dfsg-13+b2 Candidate: 3.1.2+dfsg-13+b2 Version table: *** 3.1.2+dfsg-13+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy', 'libhmsbeagle-java'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', '-y', 'install', 'libhmsbeagle-java'] 0m28.0s DUMP: Reading package lists... Building dependency tree... Reading state information... libhmsbeagle-java is already the newest version (3.1.2+dfsg-13+b2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', '-y', 'install', 'libhmsbeagle-java'] 0m28.0s INFO: Running scripts post_install 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_install_exceptions'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_install_exceptions'] 0m28.0s INFO: Running scripts post_distupgrade 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_distupgrade_exceptions'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_distupgrade_exceptions'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_distupgrade_zz_backports'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_distupgrade_zz_backports'] 0m28.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m28.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m28.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m29.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m29.0s INFO: Running scripts pre_install 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_database-server'] 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_database-server'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_exceptions'] 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_exceptions'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_extras'] 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_extras'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture'] 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy'] 0m29.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy', 'libhmsbeagle-java'] 0m29.2s DUMP: libhmsbeagle-java: Installed: 3.1.2+dfsg-13+b2 Candidate: 3.1.2+dfsg-13+b2 Version table: *** 3.1.2+dfsg-13+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-cache', 'policy', 'libhmsbeagle-java'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', '-y', 'install', 'libhmsbeagle-java=3.1.2+dfsg-13+b2'] 0m29.7s DUMP: Reading package lists... Building dependency tree... Reading state information... libhmsbeagle-java is already the newest version (3.1.2+dfsg-13+b2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', '-y', 'install', 'libhmsbeagle-java=3.1.2+dfsg-13+b2'] 0m29.7s INFO: Running scripts post_install 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_install_exceptions'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_install_exceptions'] 0m29.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m30.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m30.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', '-ac', '--ignore-obsolete'] 0m32.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', '-ac', '--ignore-obsolete'] 0m32.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.2s DUMP: 0.15.6 0m32.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.2s INFO: Running adequate version 0.15.6 now. 0m32.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'libhmsbeagle-java'] 0m32.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'libhmsbeagle-java'] 0m32.2s INFO: Running scripts pre_remove 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_exceptions'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/pre_remove_exceptions'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m33.1s DUMP: install ok installed apt apt 2.9.10 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-7 install ok installed gpgv gpgv 2.2.45-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.10 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-3 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libclang-common-19-dev:amd64 libclang-common-19-dev 1:19.1.2-2 install ok installed libclang-cpp19 libclang-cpp19 1:19.1.2-2 install ok installed libclc-19 libclc-19 1:19.1.2-2 install ok installed libclc-19-dev libclc-19-dev 1:19.1.2-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272+b1 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.123-1 install ok installed libdrm-common libdrm-common 2.4.123-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.123-1 install ok installed libdrm2:amd64 libdrm2 2.4.123-1 install ok installed libedit2:amd64 libedit2 3.1-20240808-1 install ok installed libelf1t64:amd64 libelf1t64 0.192-4 install ok installed libexpat1:amd64 libexpat1 2.6.3-2 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhmsbeagle-java:amd64 libhmsbeagle-java 3.1.2+dfsg-13+b2 install ok installed libhmsbeagle1v5:amd64 libhmsbeagle1v5 3.1.2+dfsg-13+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libicu72:amd64 libicu72 72.1-5+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libllvm19:amd64 libllvm19 1:19.1.2-2 install ok installed libllvmspirvlib19.1:amd64 libllvmspirvlib19.1 19.1.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b2 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b2 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-7 install ok installed libsystemd0:amd64 libsystemd0 256.7-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 256.7-2 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1+b3 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mesa-opencl-icd:amd64 mesa-opencl-icd 24.2.4-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.2-1+b2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.40.0-6 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', 'remove', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libexpat1:amd64', 'libhmsbeagle-java:amd64', 'libhmsbeagle1v5:amd64', 'libicu72:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libxml2:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'ocl-icd-libopencl1:amd64'] 0m34.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libclang-common-19-dev libclang-cpp19 libclc-19 libclc-19-dev libdrm-amdgpu1 libdrm-common libdrm-radeon1 libdrm2 libedit2 libelf1t64 libexpat1 libhmsbeagle-java libhmsbeagle1v5 libicu72 libllvm19 libllvmspirvlib19.1 libxml2 libz3-4 mesa-opencl-icd ocl-icd-libopencl1 0 upgraded, 0 newly installed, 20 to remove and 0 not upgraded. After this operation, 497 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6024 files and directories currently installed.) Removing libhmsbeagle-java:amd64 (3.1.2+dfsg-13+b2) ... Removing libhmsbeagle1v5:amd64 (3.1.2+dfsg-13+b2) ... Removing mesa-opencl-icd:amd64 (24.2.4-1) ... Removing libclc-19 (1:19.1.2-2) ... Removing libclang-common-19-dev:amd64 (1:19.1.2-2) ... Removing libclang-cpp19 (1:19.1.2-2) ... Removing libclc-19-dev (1:19.1.2-2) ... Removing libdrm-amdgpu1:amd64 (2.4.123-1) ... Removing libdrm-radeon1:amd64 (2.4.123-1) ... Removing libdrm2:amd64 (2.4.123-1) ... Removing libdrm-common (2.4.123-1) ... Removing libllvmspirvlib19.1:amd64 (19.1.0-1) ... Removing libllvm19:amd64 (1:19.1.2-2) ... Removing libedit2:amd64 (3.1-20240808-1) ... Removing libelf1t64:amd64 (0.192-4) ... Removing libexpat1:amd64 (2.6.3-2) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Removing libicu72:amd64 (72.1-5+b1) ... Removing libz3-4:amd64 (4.8.12-3.1+b3) ... Removing ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Processing triggers for libc-bin (2.40-3) ... 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', 'remove', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libexpat1:amd64', 'libhmsbeagle-java:amd64', 'libhmsbeagle1v5:amd64', 'libicu72:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libxml2:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'ocl-icd-libopencl1:amd64'] 0m34.0s INFO: Running scripts post_remove 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_remove_exceptions'] 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_remove_exceptions'] 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg', '--purge', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libexpat1:amd64', 'libhmsbeagle-java:amd64', 'libhmsbeagle1v5:amd64', 'libicu72:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libxml2:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'ocl-icd-libopencl1:amd64'] 0m34.0s DUMP: dpkg: warning: ignoring request to remove libclang-common-19-dev which isn't installed dpkg: warning: ignoring request to remove libclang-cpp19 which isn't installed dpkg: warning: ignoring request to remove libclc-19 which isn't installed dpkg: warning: ignoring request to remove libclc-19-dev which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libhmsbeagle-java which isn't installed dpkg: warning: ignoring request to remove libhmsbeagle1v5 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libllvm19 which isn't installed dpkg: warning: ignoring request to remove libllvmspirvlib19.1 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed (Reading database ... 5162 files and directories currently installed.) Purging configuration files for mesa-opencl-icd:amd64 (24.2.4-1) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg', '--purge', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libexpat1:amd64', 'libhmsbeagle-java:amd64', 'libhmsbeagle1v5:amd64', 'libicu72:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libxml2:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'ocl-icd-libopencl1:amd64'] 0m34.0s INFO: Running scripts post_purge 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_purge_exceptions'] 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_purge_exceptions'] 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg', '--purge', '--pending'] 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg', '--purge', '--pending'] 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg', '--remove', '--pending'] 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg', '--remove', '--pending'] 0m34.1s INFO: Running scripts post_test 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_test_exceptions'] 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'tmp/scripts/post_test_exceptions'] 0m34.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m34.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg-divert', '--list'] 0m34.5s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'dpkg-divert', '--list'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', 'clean'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n', 'apt-get', 'clean'] 0m34.6s DEBUG: Recording chroot state 0m35.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/shm'] 0m35.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/shm'] 0m35.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/console'] 0m35.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/console'] 0m35.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/ptmx'] 0m35.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/ptmx'] 0m35.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/pts'] 0m35.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/dev/pts'] 0m35.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/proc'] 0m35.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n/proc'] 0m35.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m35.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7lfpho3n'] 0m35.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp7lfpho3n 0m35.7s INFO: PASS: Upgrading between Debian distributions. 0m35.7s INFO: PASS: All tests. 0m35.7s INFO: piuparts run ends. ret=0 End: 2024-10-30 04:10:16 GMT