Start: 2024-10-18 09:18:41 GMT [testing] Package: libncbi-vdb-dev Source: ncbi-vdb (3.0.2+dfsg-2) Version: 3.0.2+dfsg-2+b1 Installed-Size: 7852 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb3 (= 3.0.2+dfsg-2+b1), libncbi-wvdb-dev (= 3.0.2+dfsg-2+b1), libaec-dev, libbz2-dev, libzstd-dev, zlib1g-dev Description: libraries for using data in the INSDC Sequence Read Archives (devel) Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: e70dc7ddf4e377a06c2d8543dd083b4d Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_3.0.2+dfsg-2+b1_amd64.deb Size: 1459936 MD5sum: 9afacc1ef05b75db66c8ed6ff816b87b SHA256: b4db56b4647b60acc2f6e504e4b4d6dcee04bce16a890ed801acd7f26411be99 [sid] Package: libncbi-vdb-dev Source: ncbi-vdb Version: 3.0.9+dfsg-2 Installed-Size: 8800 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb3 (= 3.0.9+dfsg-2), libncbi-wvdb-dev (= 3.0.9+dfsg-2), libaec-dev, libbz2-dev, libzstd-dev, zlib1g-dev Description: libraries for using data in the INSDC Sequence Read Archives (devel) Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: e70dc7ddf4e377a06c2d8543dd083b4d Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_3.0.9+dfsg-2_amd64.deb Size: 1612452 MD5sum: cb98b5e75e6e64df9b01cc5825cbd956 SHA256: a4e431ff90fbe2fe23038c693f5ea3663cbaa29760d2250904f760189a550b5e Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libncbi-vdb-dev=3.0.9+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libncbi-vdb-dev=3.0.9+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpm90lv9zw 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpm90lv9zw 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpm90lv9zw/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', 'update'] 0m1.6s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [169 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9323 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6229 kB] Fetched 15.7 MB in 1s (16.5 MB/s) Reading package lists... 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', 'update'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', '-yf', 'dist-upgrade'] 0m1.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', '-yf', 'dist-upgrade'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.1s DUMP: 7438af6f0bd173211c6d3e89d81e85b1 - 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.1s INFO: Running scripts post_setup 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_dummy_users'] 0m2.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_dummy_users'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_forbid_home'] 0m2.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_forbid_home'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_minimize'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_minimize'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_zz_backports'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_setup_zz_backports'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.8s DUMP: install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b1 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:3.1.2-4 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-4+b1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 256.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.7-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.10-2 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m2.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m3.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m3.1s INFO: Running scripts is_testable 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/is_testable_uninstallable'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/is_testable_uninstallable'] 0m3.1s INFO: Running scripts pre_test 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_test_exceptions'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_test_exceptions'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_test_root_password'] 0m3.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_test_root_password'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m3.2s DUMP: Package: libncbi-vdb-dev Source: ncbi-vdb (3.0.2+dfsg-2) Version: 3.0.2+dfsg-2+b1 Installed-Size: 7852 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb3 (= 3.0.2+dfsg-2+b1), libncbi-wvdb-dev (= 3.0.2+dfsg-2+b1), libaec-dev, libbz2-dev, libzstd-dev, zlib1g-dev Description-en: libraries for using data in the INSDC Sequence Read Archives (devel) The (US) National Center for Biotechnology Information (NCBI)'s Virtual/Vertical Database (VDB) is a highly compressed column-oriented data warehousing technology developed initially to address the needs of the Sequence Read Archive (SRA). It is unique in that it builds databases from smaller parts that can function independently as _documents_, supports effective and efficient compression, supports encryption while remaining encrypted on disk, transparent distribution and remote access. . This is the development package for reading VDB data. Description-md5: e70dc7ddf4e377a06c2d8543dd083b4d Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_3.0.2+dfsg-2+b1_amd64.deb Size: 1459936 MD5sum: 9afacc1ef05b75db66c8ed6ff816b87b SHA256: b4db56b4647b60acc2f6e504e4b4d6dcee04bce16a890ed801acd7f26411be99 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m3.2s INFO: apt-cache knows about the following packages: libncbi-vdb-dev 0m3.2s INFO: Running scripts pre_install 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_database-server'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_database-server'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_exceptions'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_exceptions'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_extras'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_extras'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy'] 0m3.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m3.3s DUMP: libncbi-vdb-dev: Installed: (none) Candidate: 3.0.2+dfsg-2+b1 Version table: 3.0.2+dfsg-2+b1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m4.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libcrypt-dev libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libncbi-vdb3 libncbi-wvdb-dev libncbi-wvdb3 libsz2 libzstd-dev linux-libc-dev ncbi-vdb-data rpcsvc-proto zlib1g-dev Suggested packages: libc-devtools glibc-doc manpages-dev Recommended packages: bzip2-doc manpages manpages-dev The following NEW packages will be installed: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libcrypt-dev libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libncbi-vdb-dev libncbi-vdb3 libncbi-wvdb-dev libncbi-wvdb3 libsz2 libzstd-dev linux-libc-dev ncbi-vdb-data rpcsvc-proto zlib1g-dev 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. Need to get 11.4 MB of archives. After this operation, 48.3 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get:3 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libc-dev-bin amd64 2.40-3 [51.8 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 linux-libc-dev all 6.11.2-1 [2424 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libcrypt-dev amd64 1:4.4.36-5 [118 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libc6-dev amd64 2.40-3 [1956 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 ncbi-vdb-data all 3.0.2+dfsg-2 [73.3 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb3 amd64 3.0.2+dfsg-2+b1 [1049 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libncbi-wvdb3 amd64 3.0.2+dfsg-2+b1 [1078 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libncbi-wvdb-dev amd64 3.0.2+dfsg-2+b1 [1186 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.6+dfsg-1 [368 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb-dev amd64 3.0.2+dfsg-2+b1 [1460 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.4 MB in 0s (147 MB/s) Selecting previously unselected package libaec0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5144 files and directories currently installed.) Preparing to unpack .../00-libaec0_1.1.3-1_amd64.deb ... Unpacking libaec0:amd64 (1.1.3-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../01-libsz2_1.1.3-1_amd64.deb ... Unpacking libsz2:amd64 (1.1.3-1) ... Selecting previously unselected package libaec-dev:amd64. Preparing to unpack .../02-libaec-dev_1.1.3-1_amd64.deb ... Unpacking libaec-dev:amd64 (1.1.3-1) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../03-libc-dev-bin_2.40-3_amd64.deb ... Unpacking libc-dev-bin (2.40-3) ... Selecting previously unselected package linux-libc-dev. Preparing to unpack .../04-linux-libc-dev_6.11.2-1_all.deb ... Unpacking linux-libc-dev (6.11.2-1) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../05-libcrypt-dev_1%3a4.4.36-5_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.36-5) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../06-rpcsvc-proto_1.4.3-1_amd64.deb ... Unpacking rpcsvc-proto (1.4.3-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../07-libc6-dev_2.40-3_amd64.deb ... Unpacking libc6-dev:amd64 (2.40-3) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../08-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libmbedcrypto7t64:amd64. Preparing to unpack .../09-libmbedcrypto7t64_2.28.8-1_amd64.deb ... Unpacking libmbedcrypto7t64:amd64 (2.28.8-1) ... Selecting previously unselected package libmbedx509-1t64:amd64. Preparing to unpack .../10-libmbedx509-1t64_2.28.8-1_amd64.deb ... Unpacking libmbedx509-1t64:amd64 (2.28.8-1) ... Selecting previously unselected package libmbedtls14t64:amd64. Preparing to unpack .../11-libmbedtls14t64_2.28.8-1_amd64.deb ... Unpacking libmbedtls14t64:amd64 (2.28.8-1) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../12-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../13-libncbi-vdb3_3.0.2+dfsg-2+b1_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.0.2+dfsg-2+b1) ... Selecting previously unselected package libncbi-wvdb3:amd64. Preparing to unpack .../14-libncbi-wvdb3_3.0.2+dfsg-2+b1_amd64.deb ... Unpacking libncbi-wvdb3:amd64 (3.0.2+dfsg-2+b1) ... Selecting previously unselected package libncbi-wvdb-dev:amd64. Preparing to unpack .../15-libncbi-wvdb-dev_3.0.2+dfsg-2+b1_amd64.deb ... Unpacking libncbi-wvdb-dev:amd64 (3.0.2+dfsg-2+b1) ... Selecting previously unselected package libzstd-dev:amd64. Preparing to unpack .../16-libzstd-dev_1.5.6+dfsg-1_amd64.deb ... Unpacking libzstd-dev:amd64 (1.5.6+dfsg-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../17-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Selecting previously unselected package libncbi-vdb-dev:amd64. Preparing to unpack .../18-libncbi-vdb-dev_3.0.2+dfsg-2+b1_amd64.deb ... Unpacking libncbi-vdb-dev:amd64 (3.0.2+dfsg-2+b1) ... Setting up libzstd-dev:amd64 (1.5.6+dfsg-1) ... Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ... Setting up linux-libc-dev (6.11.2-1) ... Setting up libaec0:amd64 (1.1.3-1) ... Setting up rpcsvc-proto (1.4.3-1) ... Setting up libcrypt-dev:amd64 (1:4.4.36-5) ... Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... Setting up libc-dev-bin (2.40-3) ... Setting up libsz2:amd64 (1.1.3-1) ... Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... Setting up libaec-dev:amd64 (1.1.3-1) ... Setting up libmbedtls14t64:amd64 (2.28.8-1) ... Setting up libc6-dev:amd64 (2.40-3) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up libncbi-vdb3:amd64 (3.0.2+dfsg-2+b1) ... Setting up libncbi-wvdb3:amd64 (3.0.2+dfsg-2+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libncbi-wvdb-dev:amd64 (3.0.2+dfsg-2+b1) ... Setting up libncbi-vdb-dev:amd64 (3.0.2+dfsg-2+b1) ... Processing triggers for libc-bin (2.40-3) ... 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m4.4s INFO: Running scripts post_install 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_install_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_install_exceptions'] 0m4.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m4.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpm90lv9zw to sid 0m4.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m4.7s INFO: Running scripts pre_distupgrade 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_distupgrade_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_distupgrade_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', 'update'] 0m6.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7342 kB] Fetched 17.6 MB in 2s (11.3 MB/s) Reading package lists... 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', 'update'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', '-yf', 'dist-upgrade'] 0m8.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libmbedcrypto16 libmbedtls21 libmbedx509-7 The following packages will be upgraded: apt libapt-pkg6.0t64 libaudit-common libaudit1 libdb5.3t64 libncbi-vdb-dev libncbi-vdb3 libncbi-wvdb-dev libncbi-wvdb3 ncbi-vdb-data perl-base sysvinit-utils tzdata 13 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB of archives. After this operation, 4264 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.40.0-6 [1675 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.9 [1045 kB] Get:3 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.9 [1413 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.10-3 [33.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.0.1-1 [12.3 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.0.1-1 [54.5 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Get:8 http://deb.debian.org/debian sid/main amd64 tzdata all 2024b-3 [255 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.0-3 [350 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.0-3 [144 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.0-3 [230 kB] Get:12 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [74.0 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libncbi-vdb-dev amd64 3.0.9+dfsg-2 [1612 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libncbi-vdb3 amd64 3.0.9+dfsg-2 [1189 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libncbi-wvdb-dev amd64 3.0.9+dfsg-2 [1311 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libncbi-wvdb3 amd64 3.0.9+dfsg-2 [1191 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.3 MB in 0s (138 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9052 files and directories currently installed.) Preparing to unpack .../perl-base_5.40.0-6_amd64.deb ... Unpacking perl-base (5.40.0-6) over (5.38.2-5) ... Setting up perl-base (5.40.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9051 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.9_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.9) over (2.9.8) ... Setting up libapt-pkg6.0t64:amd64 (2.9.9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9051 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.9_amd64.deb ... Unpacking apt (2.9.9) over (2.9.8) ... Setting up apt (2.9.9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9051 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.10-3_amd64.deb ... Unpacking sysvinit-utils (3.10-3) over (3.10-2) ... Setting up sysvinit-utils (3.10-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9051 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.1-1_all.deb ... Unpacking libaudit-common (1:4.0.1-1) over (1:3.1.2-4) ... Setting up libaudit-common (1:4.0.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9051 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.1-1) over (1:3.1.2-4+b1) ... Setting up libaudit1:amd64 (1:4.0.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9050 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-9) over (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9050 files and directories currently installed.) Preparing to unpack .../0-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) over (2024a-4) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../1-libmbedcrypto16_3.6.0-3_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.0-3) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../2-libmbedx509-7_3.6.0-3_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.0-3) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../3-libmbedtls21_3.6.0-3_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.0-3) ... Preparing to unpack .../4-ncbi-vdb-data_3.0.9+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.0.9+dfsg-2) over (3.0.2+dfsg-2) ... Preparing to unpack .../5-libncbi-vdb-dev_3.0.9+dfsg-2_amd64.deb ... Unpacking libncbi-vdb-dev:amd64 (3.0.9+dfsg-2) over (3.0.2+dfsg-2+b1) ... Preparing to unpack .../6-libncbi-vdb3_3.0.9+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.0.9+dfsg-2) over (3.0.2+dfsg-2+b1) ... Preparing to unpack .../7-libncbi-wvdb-dev_3.0.9+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb-dev:amd64 (3.0.9+dfsg-2) over (3.0.2+dfsg-2+b1) ... Preparing to unpack .../8-libncbi-wvdb3_3.0.9+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb3:amd64 (3.0.9+dfsg-2) over (3.0.2+dfsg-2+b1) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 18 09:18:49 UTC 2024. Universal Time is now: Fri Oct 18 09:18:49 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up ncbi-vdb-data (3.0.9+dfsg-2) ... Setting up libmbedcrypto16:amd64 (3.6.0-3) ... Setting up libmbedx509-7:amd64 (3.6.0-3) ... Setting up libmbedtls21:amd64 (3.6.0-3) ... Setting up libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... Setting up libncbi-wvdb3:amd64 (3.0.9+dfsg-2) ... Setting up libncbi-wvdb-dev:amd64 (3.0.9+dfsg-2) ... Setting up libncbi-vdb-dev:amd64 (3.0.9+dfsg-2) ... Processing triggers for libc-bin (2.40-3) ... 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', '-yf', 'dist-upgrade'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.9s DUMP: 964d0e47c5a9dbdc61d7e9154e2fa92b - 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m9.0s DUMP: Package: libncbi-vdb-dev Source: ncbi-vdb Version: 3.0.9+dfsg-2 Installed-Size: 8800 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb3 (= 3.0.9+dfsg-2), libncbi-wvdb-dev (= 3.0.9+dfsg-2), libaec-dev, libbz2-dev, libzstd-dev, zlib1g-dev Description-en: libraries for using data in the INSDC Sequence Read Archives (devel) The (US) National Center for Biotechnology Information (NCBI)'s Virtual/Vertical Database (VDB) is a highly compressed column-oriented data warehousing technology developed initially to address the needs of the Sequence Read Archive (SRA). It is unique in that it builds databases from smaller parts that can function independently as _documents_, supports effective and efficient compression, supports encryption while remaining encrypted on disk, transparent distribution and remote access. . This is the development package for reading VDB data. Description-md5: e70dc7ddf4e377a06c2d8543dd083b4d Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_3.0.9+dfsg-2_amd64.deb Size: 1612452 MD5sum: cb98b5e75e6e64df9b01cc5825cbd956 SHA256: a4e431ff90fbe2fe23038c693f5ea3663cbaa29760d2250904f760189a550b5e 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m9.0s INFO: apt-cache knows about the following packages: libncbi-vdb-dev 0m9.0s INFO: Running scripts pre_install 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy'] 0m9.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m9.1s DUMP: libncbi-vdb-dev: Installed: 3.0.9+dfsg-2 Candidate: 3.0.9+dfsg-2 Version table: *** 3.0.9+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m9.3s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-vdb-dev is already the newest version (3.0.9+dfsg-2). The following packages were automatically installed and are no longer required: libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m9.3s INFO: Running scripts post_install 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_install_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_install_exceptions'] 0m9.3s INFO: Running scripts post_distupgrade 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_distupgrade_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_distupgrade_exceptions'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_distupgrade_zz_backports'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_distupgrade_zz_backports'] 0m9.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m9.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m9.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m10.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m10.0s INFO: Running scripts pre_install 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_database-server'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_database-server'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_exceptions'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_exceptions'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_extras'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_extras'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy'] 0m10.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m10.0s DUMP: libncbi-vdb-dev: Installed: 3.0.9+dfsg-2 Candidate: 3.0.9+dfsg-2 Version table: *** 3.0.9+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev=3.0.9+dfsg-2'] 0m10.3s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-vdb-dev is already the newest version (3.0.9+dfsg-2). The following packages were automatically installed and are no longer required: libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev=3.0.9+dfsg-2'] 0m10.3s INFO: Running scripts post_install 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_install_exceptions'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_install_exceptions'] 0m10.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m10.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m10.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', '-ac', '--ignore-obsolete'] 0m11.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', '-ac', '--ignore-obsolete'] 0m11.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.3s DUMP: 0.15.6 0m11.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.3s INFO: Running adequate version 0.15.6 now. 0m11.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'libncbi-vdb-dev'] 0m11.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'libncbi-vdb-dev'] 0m11.4s INFO: Running scripts pre_remove 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_exceptions'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/pre_remove_exceptions'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m12.1s DUMP: install ok installed apt apt 2.9.9 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b1 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libaec-dev:amd64 libaec-dev 1.1.3-1 install ok installed libaec0:amd64 libaec0 1.1.3-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.9 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc-dev-bin libc-dev-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libc6-dev:amd64 libc6-dev 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.0-3 install ok installed libmbedcrypto7t64:amd64 libmbedcrypto7t64 2.28.8-1 install ok installed libmbedtls14t64:amd64 libmbedtls14t64 2.28.8-1 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.0-3 install ok installed libmbedx509-1t64:amd64 libmbedx509-1t64 2.28.8-1 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.0-3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libncbi-vdb-dev:amd64 libncbi-vdb-dev 3.0.9+dfsg-2 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.0.9+dfsg-2 install ok installed libncbi-wvdb-dev:amd64 libncbi-wvdb-dev 3.0.9+dfsg-2 install ok installed libncbi-wvdb3:amd64 libncbi-wvdb3 3.0.9+dfsg-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 256.7-1 install ok installed libsz2:amd64 libsz2 1.1.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.7-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd-dev:amd64 libzstd-dev 1.5.6+dfsg-1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed linux-libc-dev linux-libc-dev 6.11.2-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncbi-vdb-data ncbi-vdb-data 3.0.9+dfsg-2 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.40.0-6 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.10-3 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', 'remove', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcrypt-dev:amd64', 'libmbedcrypto16:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedtls21:amd64', 'libmbedx509-1t64:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb-dev:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb-dev:amd64', 'libncbi-wvdb3:amd64', 'libsz2:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'ncbi-vdb-data', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 0m12.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libcrypt-dev libmbedcrypto16 libmbedcrypto7t64 libmbedtls14t64 libmbedtls21 libmbedx509-1t64 libmbedx509-7 libncbi-vdb-dev libncbi-vdb3 libncbi-wvdb-dev libncbi-wvdb3 libsz2 libzstd-dev linux-libc-dev ncbi-vdb-data rpcsvc-proto zlib1g-dev 0 upgraded, 0 newly installed, 22 to remove and 0 not upgraded. After this operation, 52.5 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9060 files and directories currently installed.) Removing libncbi-vdb-dev:amd64 (3.0.9+dfsg-2) ... Removing libaec-dev:amd64 (1.1.3-1) ... Removing libsz2:amd64 (1.1.3-1) ... Removing libaec0:amd64 (1.1.3-1) ... Removing libbz2-dev:amd64 (1.0.8-6) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Removing libc6-dev:amd64 (2.40-3) ... Removing libc-dev-bin (2.40-3) ... Removing libcrypt-dev:amd64 (1:4.4.36-5) ... Removing libncbi-wvdb-dev:amd64 (3.0.9+dfsg-2) ... Removing libncbi-wvdb3:amd64 (3.0.9+dfsg-2) ... Removing libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... Removing libmbedtls14t64:amd64 (2.28.8-1) ... Removing libmbedx509-1t64:amd64 (2.28.8-1) ... Removing libmbedcrypto7t64:amd64 (2.28.8-1) ... Removing libmbedtls21:amd64 (3.6.0-3) ... Removing libmbedx509-7:amd64 (3.6.0-3) ... Removing libzstd-dev:amd64 (1.5.6+dfsg-1) ... Removing linux-libc-dev (6.11.2-1) ... Removing ncbi-vdb-data (3.0.9+dfsg-2) ... Removing rpcsvc-proto (1.4.3-1) ... Removing libmbedcrypto16:amd64 (3.6.0-3) ... Processing triggers for libc-bin (2.40-3) ... 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', 'remove', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcrypt-dev:amd64', 'libmbedcrypto16:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedtls21:amd64', 'libmbedx509-1t64:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb-dev:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb-dev:amd64', 'libncbi-wvdb3:amd64', 'libsz2:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'ncbi-vdb-data', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 0m12.7s INFO: Running scripts post_remove 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_remove_exceptions'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_remove_exceptions'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg', '--purge', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcrypt-dev:amd64', 'libmbedcrypto16:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedtls21:amd64', 'libmbedx509-1t64:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb-dev:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb-dev:amd64', 'libncbi-wvdb3:amd64', 'libsz2:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'ncbi-vdb-data', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 0m12.7s DUMP: dpkg: warning: ignoring request to remove libaec-dev which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed (Reading database ... 5130 files and directories currently installed.) Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-5) ... dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7t64 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14t64 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1t64 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb-dev which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed dpkg: warning: ignoring request to remove libncbi-wvdb-dev which isn't installed dpkg: warning: ignoring request to remove libncbi-wvdb3 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libzstd-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove ncbi-vdb-data which isn't installed dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg', '--purge', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcrypt-dev:amd64', 'libmbedcrypto16:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedtls21:amd64', 'libmbedx509-1t64:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb-dev:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb-dev:amd64', 'libncbi-wvdb3:amd64', 'libsz2:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'ncbi-vdb-data', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 0m12.7s INFO: Running scripts post_purge 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_purge_exceptions'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_purge_exceptions'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg', '--purge', '--pending'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg', '--purge', '--pending'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg', '--remove', '--pending'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg', '--remove', '--pending'] 0m12.7s INFO: Running scripts post_test 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_test_exceptions'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'tmp/scripts/post_test_exceptions'] 0m12.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m13.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg-divert', '--list'] 0m13.0s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'dpkg-divert', '--list'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', 'clean'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw', 'apt-get', 'clean'] 0m13.0s DEBUG: Recording chroot state 0m13.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/shm'] 0m13.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/shm'] 0m13.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/console'] 0m13.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/console'] 0m13.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/ptmx'] 0m13.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/ptmx'] 0m13.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/pts'] 0m13.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/dev/pts'] 0m13.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/proc'] 0m13.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw/proc'] 0m13.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m13.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpm90lv9zw'] 0m13.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpm90lv9zw 0m13.7s INFO: PASS: Upgrading between Debian distributions. 0m13.7s INFO: PASS: All tests. 0m13.7s INFO: piuparts run ends. ret=0 End: 2024-10-18 09:18:55 GMT