Start: 2026-09-28 09:24:26 GMT [testing] Package: libncbi-wvdb3 Source: ncbi-vdb (3.2.1+dfsg-2) Version: 3.2.1+dfsg-2+b1 Installed-Size: 3485 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libstdc++6 (>= 4.1.1), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.2), ncbi-vdb-data (>= 3.2.1+dfsg-2) Description: virtual layer update module of ncbi-vdb library Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: 8a7b8bf0ce8fc54e15a4863648ce9ebb Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-wvdb3_3.2.1+dfsg-2+b1_amd64.deb Size: 1183296 MD5sum: 92a633b45ca94f33f4086ff0cab8b9a0 SHA256: 1b43eeff50d78bdd5d0632e0c23d2c315259c8fa3405afb39289c20d177893b7 [sid] Package: libncbi-wvdb3 Source: ncbi-vdb Version: 3.4.1+dfsg-1 Installed-Size: 3643 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libstdc++6 (>= 5), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.2), ncbi-vdb-data (>= 3.4.1+dfsg-1) Description: virtual layer update module of ncbi-vdb library Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: 8a7b8bf0ce8fc54e15a4863648ce9ebb Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-wvdb3_3.4.1+dfsg-1_amd64.deb Size: 1262416 MD5sum: 79dce9fac7e3eeddb6db3011f446c6b9 SHA256: 3b165448404950712d859cf3daea652a8c6595504816a28a98909be7b8434814 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libncbi-wvdb3=3.4.1+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libncbi-wvdb3=3.4.1+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp9fy9tst7 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp9fy9tst7 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/10', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/10', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp9fy9tst7/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', 'update'] 0m2.3s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9994 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6617 kB] Fetched 16.8 MB in 1s (15.1 MB/s) Reading package lists... 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', 'update'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.6s DUMP: 884bca274942f333c49b00d6a1e0e418 - 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.6s INFO: Running scripts post_setup 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_minimize'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_minimize'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_zz_backports'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_setup_zz_backports'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.3-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.3-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-6 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-6 install ok installed libc6:amd64 libc6 2.43-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.3-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.3-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.3-1 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.3-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026c-1 install ok installed util-linux util-linux 2.42.3-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m4.7s INFO: Running scripts is_testable 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_test_root_password'] 0m4.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_test_root_password'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'show', '--no-all-versions', 'libncbi-wvdb3'] 0m5.2s DUMP: Package: libncbi-wvdb3 Source: ncbi-vdb (3.2.1+dfsg-2) Version: 3.2.1+dfsg-2+b1 Installed-Size: 3485 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libstdc++6 (>= 4.1.1), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.2), ncbi-vdb-data (>= 3.2.1+dfsg-2) Description-en: virtual layer update module of ncbi-vdb library The (US) National Center for Biotechnology Information (NCBI)'s Virtual/Vertical Database (VDB) is a highly compressed column-oriented data warehousing technology developed initially to address the needs of the Sequence Read Archive (SRA). It is unique in that it builds databases from smaller parts that can function independently as _documents_, supports effective and efficient compression, supports encryption while remaining encrypted on disk, transparent distribution and remote access. . This package contains a runtime library for updating VDB data. Description-md5: 8a7b8bf0ce8fc54e15a4863648ce9ebb Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-wvdb3_3.2.1+dfsg-2+b1_amd64.deb Size: 1183296 MD5sum: 92a633b45ca94f33f4086ff0cab8b9a0 SHA256: 1b43eeff50d78bdd5d0632e0c23d2c315259c8fa3405afb39289c20d177893b7 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'show', '--no-all-versions', 'libncbi-wvdb3'] 0m5.2s INFO: apt-cache knows about the following packages: libncbi-wvdb3 0m5.2s INFO: Running scripts pre_install 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy'] 0m5.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy', 'libncbi-wvdb3'] 0m5.3s DUMP: libncbi-wvdb3: Installed: (none) Candidate: 3.2.1+dfsg-2+b1 Version table: 3.2.1+dfsg-2+b1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy', 'libncbi-wvdb3'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', '-y', 'install', 'libncbi-wvdb3'] 0m6.7s DUMP: Reading package lists... Building dependency tree... Solving dependencies... The following additional packages will be installed: libmbedcrypto16 libmbedtls21 libmbedx509-7 ncbi-vdb-data Recommended packages: python3:any The following NEW packages will be installed: libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-wvdb3 ncbi-vdb-data 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 2046 kB of archives. After this operation, 5603 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libmbedcrypto16 amd64 3.6.7-3 [367 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libmbedx509-7 amd64 3.6.7-3 [157 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libmbedtls21 amd64 3.6.7-3 [250 kB] Get:4 http://deb.debian.org/debian forky/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libncbi-wvdb3 amd64 3.2.1+dfsg-2+b1 [1183 kB] Fetched 2046 kB in 0s (27.1 MB/s) Selecting previously unselected package libmbedcrypto16:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4963 files and directories currently installed.) Preparing to unpack .../libmbedcrypto16_3.6.7-3_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.7-3) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../libmbedx509-7_3.6.7-3_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.7-3) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../libmbedtls21_3.6.7-3_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.7-3) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-wvdb3:amd64. Preparing to unpack .../libncbi-wvdb3_3.2.1+dfsg-2+b1_amd64.deb ... Unpacking libncbi-wvdb3:amd64 (3.2.1+dfsg-2+b1) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up libmbedcrypto16:amd64 (3.6.7-3) ... Setting up libmbedx509-7:amd64 (3.6.7-3) ... Setting up libmbedtls21:amd64 (3.6.7-3) ... Setting up libncbi-wvdb3:amd64 (3.2.1+dfsg-2+b1) ... Processing triggers for libc-bin (2.43-6) ... 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', '-y', 'install', 'libncbi-wvdb3'] 0m6.7s INFO: Running scripts post_install 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_install_exceptions'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_install_exceptions'] 0m6.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m7.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m7.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp9fy9tst7 to sid 0m7.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m7.0s INFO: Running scripts pre_distupgrade 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_distupgrade_exceptions'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_distupgrade_exceptions'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', 'update'] 0m10.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7727 kB] Fetched 18.7 MB in 2s (9362 kB/s) Reading package lists... 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', 'update'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', '-yf', 'dist-upgrade'] 0m15.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libexpat1 libffi8 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 media-types netbase python3 python3-minimal python3.14 python3.14-minimal readline-common The following packages will be upgraded: bsdutils libaudit-common libaudit1 libblkid1 libmount1 libncbi-wvdb3 libselinux1 libsmartcols1 libsystemd0 libudev1 libuuid1 login mount ncbi-vdb-data util-linux 15 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 12.9 MB of archives. After this operation, 30.1 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.42.4-1 [34.5 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.42.4-1 [185 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.42.4-1 [232 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.42.4-1 [153 kB] Get:5 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.42.4-1 [1254 kB] Get:6 http://deb.debian.org/debian sid/main amd64 mount amd64 2.42.4-1 [172 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.11-2.1 [92.2 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 262-1 [512 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:11 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.42.4-1 [124 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.5-1 [132 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3.14-minimal amd64 3.14.7-5 [902 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3.14-minimal amd64 3.14.7-5 [2720 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:16 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:17 http://deb.debian.org/debian sid/main amd64 netbase all 6.6 [10.3 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:20 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libpython3.14-stdlib amd64 3.14.7-5 [2362 kB] Get:24 http://deb.debian.org/debian sid/main amd64 python3.14 amd64 3.14.7-5 [861 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:26 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 262-1 [148 kB] Get:28 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.42.4-1 [92.9 kB] Get:29 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.4.1+dfsg-1 [86.1 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libncbi-wvdb3 amd64 3.4.1+dfsg-1 [1262 kB] Fetched 12.9 MB in 0s (60.0 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5043 files and directories currently installed.) Preparing to unpack .../util-linux_2.42.4-1_amd64.deb ... Unpacking util-linux (2.42.4-1) over (2.42.3-1) ... Setting up util-linux (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5044 files and directories currently installed.) Preparing to unpack .../mount_2.42.4-1_amd64.deb ... Unpacking mount (2.42.4-1) over (2.42.3-1) ... Preparing to unpack .../libselinux1_3.11-2.1_amd64.deb ... Unpacking libselinux1:amd64 (3.11-2.1) over (3.11-2) ... Setting up libselinux1:amd64 (3.11-2.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5044 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.2.1-1_all.deb ... Unpacking libaudit-common (1:4.2.1-1) over (1:4.1.2-1) ... Setting up libaudit-common (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5044 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.2.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.2.1-1) over (1:4.1.2-1+b2) ... Setting up libaudit1:amd64 (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5043 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.42.4-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.42.4-1) over (1:4.16.0-2+really2.42.3-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.8.5-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.5-1) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.7-5_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.7-5) ... Selecting previously unselected package python3.14-minimal. Preparing to unpack .../python3.14-minimal_3.14.7-5_amd64.deb ... Unpacking python3.14-minimal (3.14.7-5) ... Setting up libpython3.14-minimal:amd64 (3.14.7-5) ... Setting up libexpat1:amd64 (2.8.5-1) ... Setting up python3.14-minimal (3.14.7-5) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5399 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.14.7-3_amd64.deb ... Unpacking python3-minimal (3.14.7-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../06-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../08-libpython3.14-stdlib_3.14.7-5_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.7-5) ... Selecting previously unselected package python3.14. Preparing to unpack .../09-python3.14_3.14.7-5_amd64.deb ... Unpacking python3.14 (3.14.7-5) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../10-libpython3-stdlib_3.14.7-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3-minimal (3.14.7-3) ... Selecting previously unselected package python3. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5948 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.42.4-1_amd64.deb ... Unpacking bsdutils (1:2.42.4-1) over (1:2.42.3-1) ... Preparing to unpack .../ncbi-vdb-data_3.4.1+dfsg-1_all.deb ... Unpacking ncbi-vdb-data (3.4.1+dfsg-1) over (3.2.1+dfsg-2) ... Preparing to unpack .../libncbi-wvdb3_3.4.1+dfsg-1_amd64.deb ... Unpacking libncbi-wvdb3:amd64 (3.4.1+dfsg-1) over (3.2.1+dfsg-2+b1) ... Setting up media-types (14.0.0) ... Setting up bsdutils (1:2.42.4-1) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up mount (2.42.4-1) ... Setting up netbase (6.6) ... Setting up readline-common (8.3-4) ... Setting up login (1:4.16.0-2+really2.42.4-1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libpython3.14-stdlib:amd64 (3.14.7-5) ... Setting up python3.14 (3.14.7-5) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3 (3.14.7-3) ... Setting up ncbi-vdb-data (3.4.1+dfsg-1) ... Setting up libncbi-wvdb3:amd64 (3.4.1+dfsg-1) ... Processing triggers for libc-bin (2.43-6) ... 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', '-yf', 'dist-upgrade'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.0s DUMP: 3ea30317eb55d031c83f79b0c1239633 - 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'show', '--no-all-versions', 'libncbi-wvdb3'] 0m16.4s DUMP: Package: libncbi-wvdb3 Source: ncbi-vdb Version: 3.4.1+dfsg-1 Installed-Size: 3643 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libstdc++6 (>= 5), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.2), ncbi-vdb-data (>= 3.4.1+dfsg-1) Description-en: virtual layer update module of ncbi-vdb library The (US) National Center for Biotechnology Information (NCBI)'s Virtual/Vertical Database (VDB) is a highly compressed column-oriented data warehousing technology developed initially to address the needs of the Sequence Read Archive (SRA). It is unique in that it builds databases from smaller parts that can function independently as _documents_, supports effective and efficient compression, supports encryption while remaining encrypted on disk, transparent distribution and remote access. . This package contains a runtime library for updating VDB data. Description-md5: 8a7b8bf0ce8fc54e15a4863648ce9ebb Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-wvdb3_3.4.1+dfsg-1_amd64.deb Size: 1262416 MD5sum: 79dce9fac7e3eeddb6db3011f446c6b9 SHA256: 3b165448404950712d859cf3daea652a8c6595504816a28a98909be7b8434814 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'show', '--no-all-versions', 'libncbi-wvdb3'] 0m16.4s INFO: apt-cache knows about the following packages: libncbi-wvdb3 0m16.4s INFO: Running scripts pre_install 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_database-server'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_database-server'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_exceptions'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_extras'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_extras'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy'] 0m16.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy', 'libncbi-wvdb3'] 0m16.5s DUMP: libncbi-wvdb3: Installed: 3.4.1+dfsg-1 Candidate: 3.4.1+dfsg-1 Version table: *** 3.4.1+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy', 'libncbi-wvdb3'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', '-y', 'install', 'libncbi-wvdb3'] 0m17.4s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-wvdb3 is already the newest version (3.4.1+dfsg-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', '-y', 'install', 'libncbi-wvdb3'] 0m17.4s INFO: Running scripts post_install 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_install_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_install_exceptions'] 0m17.5s INFO: Running scripts post_distupgrade 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m17.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m17.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m18.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m18.3s INFO: Running scripts pre_install 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_database-server'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_database-server'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_exceptions'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_exceptions'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_extras'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_extras'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy'] 0m18.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy', 'libncbi-wvdb3'] 0m18.4s DUMP: libncbi-wvdb3: Installed: 3.4.1+dfsg-1 Candidate: 3.4.1+dfsg-1 Version table: *** 3.4.1+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-cache', 'policy', 'libncbi-wvdb3'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', '-y', 'install', 'libncbi-wvdb3=3.4.1+dfsg-1'] 0m19.4s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-wvdb3 is already the newest version (3.4.1+dfsg-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', '-y', 'install', 'libncbi-wvdb3=3.4.1+dfsg-1'] 0m19.4s INFO: Running scripts post_install 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_install_exceptions'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_install_exceptions'] 0m19.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m19.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m20.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', '-ac', '--ignore-obsolete'] 0m20.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', '-ac', '--ignore-obsolete'] 0m20.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.6s DUMP: 0.17.5+b5 0m20.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.6s INFO: Running adequate version 0.17.5+b5 now. 0m20.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'libncbi-wvdb3'] 0m20.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'libncbi-wvdb3'] 0m20.7s INFO: Running scripts pre_remove 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_exceptions'] 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/pre_remove_exceptions'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.2s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-6 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-6 install ok installed libc6:amd64 libc6 2.43-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libexpat1:amd64 libexpat1 2.8.5-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.7-3 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.7-3 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.7-3 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncbi-wvdb3:amd64 libncbi-wvdb3 3.4.1+dfsg-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.7-5 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.7-5 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.4-1 install ok installed ncbi-vdb-data ncbi-vdb-data 3.4.1+dfsg-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed python3 python3 3.14.7-3 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3.14 python3.14 3.14.7-5 install ok installed python3.14-minimal python3.14-minimal 3.14.7-5 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026c-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', 'remove', '--allow-remove-essential', 'libexpat1:amd64', 'libffi8:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-wvdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m22.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: libexpat1 libffi8 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-wvdb3 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 media-types ncbi-vdb-data netbase python3 python3-minimal python3.14 python3.14-minimal readline-common 0 upgraded, 0 newly installed, 20 to remove and 0 not upgraded. After this operation, 35.4 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5947 files and directories currently installed.) Removing libncbi-wvdb3:amd64 (3.4.1+dfsg-1) ... Removing ncbi-vdb-data (3.4.1+dfsg-1) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.7-5) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.7-5) ... Removing libexpat1:amd64 (2.8.5-1) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.7-5) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing libmbedtls21:amd64 (3.6.7-3) ... Removing libmbedx509-7:amd64 (3.6.7-3) ... Removing libmbedcrypto16:amd64 (3.6.7-3) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libpython3.14-minimal:amd64 (3.14.7-5) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.43-6) ... 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', 'remove', '--allow-remove-essential', 'libexpat1:amd64', 'libffi8:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-wvdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m22.9s INFO: Running scripts post_remove 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_remove_exceptions'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_remove_exceptions'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg', '--purge', 'libexpat1:amd64', 'libffi8:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-wvdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m22.9s DUMP: dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libmbedcrypto16 which is not installed dpkg: warning: ignoring request to remove libmbedtls21 which is not installed dpkg: warning: ignoring request to remove libmbedx509-7 which is not installed dpkg: warning: ignoring request to remove libncbi-wvdb3 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed (Reading database ... 4972 files and directories currently installed.) Purging configuration files for libpython3.14-minimal:amd64 (3.14.7-5) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for ncbi-vdb-data (3.4.1+dfsg-1) ... Purging configuration files for netbase (6.6) ... Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.7-5) ... Purging configuration files for readline-common (8.3-4) ... 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg', '--purge', 'libexpat1:amd64', 'libffi8:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-wvdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m22.9s INFO: Running scripts post_purge 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_purge_exceptions'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_purge_exceptions'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg', '--purge', '--pending'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg', '--purge', '--pending'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg', '--remove', '--pending'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg', '--remove', '--pending'] 0m22.9s INFO: Running scripts post_test 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_test_exceptions'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'tmp/scripts/post_test_exceptions'] 0m22.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m23.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg-divert', '--list'] 0m23.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'dpkg-divert', '--list'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', 'clean'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7', 'apt-get', 'clean'] 0m23.3s DEBUG: Recording chroot state 0m24.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/shm'] 0m24.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/shm'] 0m24.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/console'] 0m24.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/console'] 0m24.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/ptmx'] 0m24.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/ptmx'] 0m24.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/pts'] 0m24.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/dev/pts'] 0m24.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/proc'] 0m24.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7/proc'] 0m24.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m24.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9fy9tst7'] 0m24.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp9fy9tst7 0m24.5s INFO: PASS: Upgrading between Debian distributions. 0m24.5s INFO: PASS: All tests. 0m24.5s INFO: piuparts run ends. ret=0 End: 2026-09-28 09:24:50 GMT