Start: 2025-05-27 02:52:21 GMT [testing] Package: libncbi6t64 Source: ncbi-tools6 Version: 6.1.20170106+dfsg2-5 Installed-Size: 13909 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: libncbi6 Provides: libncbi6 (= 6.1.20170106+dfsg2-5) Depends: ncbi-data (= 6.1.20170106+dfsg2-5), libc6 (>= 2.38), libgnutls30t64 (>= 3.8.1) Breaks: libncbi6 (<< 6.1.20170106+dfsg2-5) Description: NCBI libraries for biology applications Multi-Arch: same Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description-md5: ee2f5e6d19b749ea798d4e71fc2ea0e6 Section: libs Priority: optional Filename: pool/main/n/ncbi-tools6/libncbi6t64_6.1.20170106+dfsg2-5_amd64.deb Size: 4103276 MD5sum: dfc0e17e6696e55bee33c963d0c37109 SHA256: 56cb5b0ad4f757751c6684b7477cc363763ef8aaf435d9b36ae61a0de70b5547 [sid] Package: libncbi6t64 Source: ncbi-tools6 Version: 6.1.20170106+dfsg2-6 Installed-Size: 13918 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: libncbi6 Provides: libncbi6 (= 6.1.20170106+dfsg2-6) Depends: ncbi-data (= 6.1.20170106+dfsg2-6), libc6 (>= 2.38), libgnutls30t64 (>= 3.8.1) Breaks: libncbi6 (<< 6.1.20170106+dfsg2-6) Description: NCBI libraries for biology applications Multi-Arch: same Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description-md5: ee2f5e6d19b749ea798d4e71fc2ea0e6 Section: libs Priority: optional Filename: pool/main/n/ncbi-tools6/libncbi6t64_6.1.20170106+dfsg2-6_amd64.deb Size: 4107204 MD5sum: 4c0211836e6c47eee7ec512754b39b70 SHA256: 35b692a08eec5939befc202eeeb267467607da64de002ac2e8a2f73e5afd2d0b Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libncbi6t64=6.1.20170106+dfsg2-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libncbi6t64=6.1.20170106+dfsg2-6 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-35-amd64 #1 SMP Debian 5.10.237-1 (2025-05-19) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpgqpax_96 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpgqpax_96 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpgqpax_96/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', 'update'] 0m1.5s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [178 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9677 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6491 kB] Fetched 16.3 MB in 1s (19.4 MB/s) Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', '-yf', 'dist-upgrade'] 0m1.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', '-yf', 'dist-upgrade'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.0s DUMP: 3dc1c878abec06238ee56ec08224ec44 - 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.0s INFO: Running scripts post_setup 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_dummy_users'] 0m2.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_dummy_users'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_forbid_home'] 0m2.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_forbid_home'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_minimize'] 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_minimize'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_zz_backports'] 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_setup_zz_backports'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.4s DUMP: install ok installed apt apt 3.0.1 install ok installed base-files base-files 13.8 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b2 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-2 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.22 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.1 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-8 install ok installed libc6:amd64 libc6 2.41-8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-7 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-4 install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.5-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.5-2 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-3 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-2 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-3 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m2.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m2.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m2.6s INFO: Running scripts is_testable 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/is_testable_uninstallable'] 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/is_testable_uninstallable'] 0m2.6s INFO: Running scripts pre_test 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_test_exceptions'] 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_test_exceptions'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_test_root_password'] 0m2.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_test_root_password'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'show', '--no-all-versions', 'libncbi6t64'] 0m2.8s DUMP: Package: libncbi6t64 Source: ncbi-tools6 Version: 6.1.20170106+dfsg2-5 Installed-Size: 13909 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: libncbi6 Provides: libncbi6 (= 6.1.20170106+dfsg2-5) Depends: ncbi-data (= 6.1.20170106+dfsg2-5), libc6 (>= 2.38), libgnutls30t64 (>= 3.8.1) Breaks: libncbi6 (<< 6.1.20170106+dfsg2-5) Description-en: NCBI libraries for biology applications The NCBI Software Development Toolkit was developed for the production and distribution of GenBank, Entrez, BLAST, and related services by NCBI. It allows you to read and write NCBI ASN.1 files, builds Blast or Entrez, etc. Description-md5: ee2f5e6d19b749ea798d4e71fc2ea0e6 Multi-Arch: same Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Section: libs Priority: optional Filename: pool/main/n/ncbi-tools6/libncbi6t64_6.1.20170106+dfsg2-5_amd64.deb Size: 4103276 MD5sum: dfc0e17e6696e55bee33c963d0c37109 SHA256: 56cb5b0ad4f757751c6684b7477cc363763ef8aaf435d9b36ae61a0de70b5547 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'show', '--no-all-versions', 'libncbi6t64'] 0m2.8s INFO: apt-cache knows about the following packages: libncbi6t64 0m2.8s INFO: Running scripts pre_install 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_database-server'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_database-server'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_exceptions'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_exceptions'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_extras'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_extras'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy'] 0m2.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy', 'libncbi6t64'] 0m2.8s DUMP: libncbi6t64: Installed: (none) Candidate: 6.1.20170106+dfsg2-5 Version table: 6.1.20170106+dfsg2-5 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy', 'libncbi6t64'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', '-y', 'install', 'libncbi6t64'] 0m3.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libffi8 libgnutls30t64 libidn2-0 libp11-kit0 libtasn1-6 libunistring5 ncbi-data Suggested packages: gnutls-bin The following NEW packages will be installed: libffi8 libgnutls30t64 libidn2-0 libncbi6t64 libp11-kit0 libtasn1-6 libunistring5 ncbi-data 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 10.2 MB of archives. After this operation, 48.0 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libncbi6t64 amd64 6.1.20170106+dfsg2-5 [4103 kB] Fetched 10.2 MB in 0s (90.7 MB/s) Selecting previously unselected package libffi8:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4941 files and directories currently installed.) Preparing to unpack .../0-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../1-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../2-libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../3-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../4-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../5-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../6-ncbi-data_6.1.20170106+dfsg2-5_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-5) ... Selecting previously unselected package libncbi6t64:amd64. Preparing to unpack .../7-libncbi6t64_6.1.20170106+dfsg2-5_amd64.deb ... Unpacking libncbi6t64:amd64 (6.1.20170106+dfsg2-5) ... Setting up ncbi-data (6.1.20170106+dfsg2-5) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libncbi6t64:amd64 (6.1.20170106+dfsg2-5) ... Processing triggers for libc-bin (2.41-8) ... 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', '-y', 'install', 'libncbi6t64'] 0m3.8s INFO: Running scripts post_install 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_install_exceptions'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_install_exceptions'] 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m4.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpgqpax_96 to sid 0m4.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m4.0s INFO: Running scripts pre_distupgrade 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_distupgrade_exceptions'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_distupgrade_exceptions'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', 'update'] 0m6.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [208 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7396 kB] Fetched 17.7 MB in 2s (11.3 MB/s) Reading package lists... 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', 'update'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', '-yf', 'dist-upgrade'] 0m7.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt dpkg libapt-pkg7.0 libncbi6t64 libsqlite3-0 ncbi-data 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.7 MB of archives. After this operation, 27.6 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.0.2 [1113 kB] Get:2 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.19 [1541 kB] Get:3 http://deb.debian.org/debian sid/main amd64 apt amd64 3.0.2 [1453 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-5 [914 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libncbi6t64 amd64 6.1.20170106+dfsg2-6 [4107 kB] Get:6 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Fetched 12.7 MB in 0s (86.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5214 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.0.2_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.0.2) over (3.0.1) ... Setting up libapt-pkg7.0:amd64 (3.0.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5214 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.19_amd64.deb ... Unpacking dpkg (1.22.19) over (1.22.18) ... Setting up dpkg (1.22.19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5214 files and directories currently installed.) Preparing to unpack .../archives/apt_3.0.2_amd64.deb ... Unpacking apt (3.0.2) over (3.0.1) ... Setting up apt (3.0.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5214 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.46.1-5_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-5) over (3.46.1-4) ... Setting up libsqlite3-0:amd64 (3.46.1-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5214 files and directories currently installed.) Preparing to unpack .../libncbi6t64_6.1.20170106+dfsg2-6_amd64.deb ... Unpacking libncbi6t64:amd64 (6.1.20170106+dfsg2-6) over (6.1.20170106+dfsg2-5) ... Preparing to unpack .../ncbi-data_6.1.20170106+dfsg2-6_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-6) over (6.1.20170106+dfsg2-5) ... Setting up ncbi-data (6.1.20170106+dfsg2-6) ... Setting up libncbi6t64:amd64 (6.1.20170106+dfsg2-6) ... Processing triggers for libc-bin (2.41-8) ... 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', '-yf', 'dist-upgrade'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.0s DUMP: b6ccd1715be2204698470280dbac18f2 - 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'show', '--no-all-versions', 'libncbi6t64'] 0m8.2s DUMP: Package: libncbi6t64 Source: ncbi-tools6 Version: 6.1.20170106+dfsg2-6 Installed-Size: 13918 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: libncbi6 Provides: libncbi6 (= 6.1.20170106+dfsg2-6) Depends: ncbi-data (= 6.1.20170106+dfsg2-6), libc6 (>= 2.38), libgnutls30t64 (>= 3.8.1) Breaks: libncbi6 (<< 6.1.20170106+dfsg2-6) Description-en: NCBI libraries for biology applications The NCBI Software Development Toolkit was developed for the production and distribution of GenBank, Entrez, BLAST, and related services by NCBI. It allows you to read and write NCBI ASN.1 files, builds Blast or Entrez, etc. Description-md5: ee2f5e6d19b749ea798d4e71fc2ea0e6 Multi-Arch: same Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Section: libs Priority: optional Filename: pool/main/n/ncbi-tools6/libncbi6t64_6.1.20170106+dfsg2-6_amd64.deb Size: 4107204 MD5sum: 4c0211836e6c47eee7ec512754b39b70 SHA256: 35b692a08eec5939befc202eeeb267467607da64de002ac2e8a2f73e5afd2d0b 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'show', '--no-all-versions', 'libncbi6t64'] 0m8.2s INFO: apt-cache knows about the following packages: libncbi6t64 0m8.2s INFO: Running scripts pre_install 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy'] 0m8.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy', 'libncbi6t64'] 0m8.2s DUMP: libncbi6t64: Installed: 6.1.20170106+dfsg2-6 Candidate: 6.1.20170106+dfsg2-6 Version table: *** 6.1.20170106+dfsg2-6 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy', 'libncbi6t64'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', '-y', 'install', 'libncbi6t64'] 0m8.5s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi6t64 is already the newest version (6.1.20170106+dfsg2-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', '-y', 'install', 'libncbi6t64'] 0m8.5s INFO: Running scripts post_install 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_install_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_install_exceptions'] 0m8.5s INFO: Running scripts post_distupgrade 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_distupgrade_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_distupgrade_exceptions'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_distupgrade_zz_backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_distupgrade_zz_backports'] 0m8.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m8.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m8.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m8.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m8.9s INFO: Running scripts pre_install 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_database-server'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_database-server'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy'] 0m8.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy', 'libncbi6t64'] 0m9.0s DUMP: libncbi6t64: Installed: 6.1.20170106+dfsg2-6 Candidate: 6.1.20170106+dfsg2-6 Version table: *** 6.1.20170106+dfsg2-6 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-cache', 'policy', 'libncbi6t64'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', '-y', 'install', 'libncbi6t64=6.1.20170106+dfsg2-6'] 0m9.2s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi6t64 is already the newest version (6.1.20170106+dfsg2-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', '-y', 'install', 'libncbi6t64=6.1.20170106+dfsg2-6'] 0m9.2s INFO: Running scripts post_install 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_install_exceptions'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_install_exceptions'] 0m9.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m9.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m9.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', '-ac', '--ignore-obsolete'] 0m10.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', '-ac', '--ignore-obsolete'] 0m10.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m10.0s DUMP: 0.15.6 0m10.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m10.0s INFO: Running adequate version 0.15.6 now. 0m10.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'libncbi6t64'] 0m10.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'libncbi6t64'] 0m10.1s INFO: Running scripts pre_remove 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_exceptions'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/pre_remove_exceptions'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.5s DUMP: install ok installed apt apt 3.0.2 install ok installed base-files base-files 13.8 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b2 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-2 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.22 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.19 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.2 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-8 install ok installed libc6:amd64 libc6 2.41-8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-7 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278 install ok installed libffi8:amd64 libffi8 3.4.8-2 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libncbi6t64:amd64 libncbi6t64 6.1.20170106+dfsg2-6 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-5 install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.5-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.5-2 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-6 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-3 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-2 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-3 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', 'remove', '--allow-remove-essential', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libidn2-0:amd64', 'libncbi6t64:amd64', 'libp11-kit0:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'ncbi-data'] 0m10.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libffi8 libgnutls30t64 libidn2-0 libncbi6t64 libp11-kit0 libtasn1-6 libunistring5 ncbi-data 0 upgraded, 0 newly installed, 8 to remove and 0 not upgraded. After this operation, 48.0 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5214 files and directories currently installed.) Removing libncbi6t64:amd64 (6.1.20170106+dfsg2-6) ... Removing libgnutls30t64:amd64 (3.8.9-2) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libffi8:amd64 (3.4.8-2) ... Removing libidn2-0:amd64 (2.3.8-2) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libunistring5:amd64 (1.3-2) ... Removing ncbi-data (6.1.20170106+dfsg2-6) ... Processing triggers for libc-bin (2.41-8) ... 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', 'remove', '--allow-remove-essential', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libidn2-0:amd64', 'libncbi6t64:amd64', 'libp11-kit0:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'ncbi-data'] 0m10.9s INFO: Running scripts post_remove 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_remove_exceptions'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_remove_exceptions'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg', '--purge', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libidn2-0:amd64', 'libncbi6t64:amd64', 'libp11-kit0:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'ncbi-data'] 0m10.9s DUMP: dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libncbi6t64 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed (Reading database ... 4944 files and directories currently installed.) Purging configuration files for ncbi-data (6.1.20170106+dfsg2-6) ... 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg', '--purge', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libidn2-0:amd64', 'libncbi6t64:amd64', 'libp11-kit0:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'ncbi-data'] 0m10.9s INFO: Running scripts post_purge 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_purge_exceptions'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_purge_exceptions'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg', '--purge', '--pending'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg', '--purge', '--pending'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg', '--remove', '--pending'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg', '--remove', '--pending'] 0m10.9s INFO: Running scripts post_test 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_test_exceptions'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'tmp/scripts/post_test_exceptions'] 0m10.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m11.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg-divert', '--list'] 0m11.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'dpkg-divert', '--list'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', 'clean'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqpax_96', 'apt-get', 'clean'] 0m11.1s DEBUG: Recording chroot state 0m11.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/shm'] 0m11.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/shm'] 0m11.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/console'] 0m11.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/console'] 0m11.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/ptmx'] 0m11.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/ptmx'] 0m11.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/pts'] 0m11.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/dev/pts'] 0m11.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/proc'] 0m11.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqpax_96/proc'] 0m11.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m11.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgqpax_96'] 0m11.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpgqpax_96 0m11.8s INFO: PASS: Upgrading between Debian distributions. 0m11.8s INFO: PASS: All tests. 0m11.8s INFO: piuparts run ends. ret=0 End: 2025-05-27 02:52:33 GMT