Start: 2022-01-19 06:03:28 GMT [testing] Package: librg-reprof-bundle-perl Source: reprof Version: 1.0.1-7 Installed-Size: 21255 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, libai-fann-perl Description: protein secondary structure and accessibility predictor (perl module) Homepage: https://rostlab.org/ Description-md5: c445f7550b7b4d99a2f06d1b2366079b Tag: devel::lang:perl, devel::library, implemented-in::perl Section: perl Priority: optional Filename: pool/main/r/reprof/librg-reprof-bundle-perl_1.0.1-7_all.deb Size: 7482484 MD5sum: e59bfbd3a9a03eb4b84068bffdef90c9 SHA256: 0b5ba1625110a8f0122946a3371f1d5b99e88cc5e0cfe6f9bda5f1799f4cde82 [sid] Package: librg-reprof-bundle-perl Source: reprof Version: 1.0.1-8 Installed-Size: 21255 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, libai-fann-perl Description: protein secondary structure and accessibility predictor (perl module) Homepage: https://rostlab.org/ Description-md5: c445f7550b7b4d99a2f06d1b2366079b Tag: devel::lang:perl, devel::library, implemented-in::perl Section: perl Priority: optional Filename: pool/main/r/reprof/librg-reprof-bundle-perl_1.0.1-8_all.deb Size: 7480020 MD5sum: 794b8fb466a37126a776bfb2704f9147 SHA256: d0a2207e27b2ee6636198ea33a361fb800d20cd0178a4f987a1c9e53564a816b Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt librg-reprof-bundle-perl=1.0.1-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt librg-reprof-bundle-perl=1.0.1-8 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-18-amd64 #1 SMP Debian 4.19.208-1 (2021-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpf_nyozzv 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpf_nyozzv 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpf_nyozzv/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', 'update'] 0m3.9s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [129 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8251 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5669 kB] Fetched 14.0 MB in 2s (9295 kB/s) Reading package lists... 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', 'update'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', '-yf', 'dist-upgrade'] 0m4.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', '-yf', 'dist-upgrade'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.6s DUMP: d1eea6609971f6fcb8f81c4f80d2a669 - 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.6s INFO: Running scripts post_setup 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_forbid_home'] 0m5.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_forbid_home'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_minimize'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_minimize'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.14 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.2-6 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-13 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-13 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.61 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.14 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-2 install ok installed libc6:amd64 libc6 2.33-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-13 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-6 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-6 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-13 install ok installed libsystemd0:amd64 libsystemd0 250.2-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.2-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-6 install ok installed ncurses-base ncurses-base 6.3-1 install ok installed ncurses-bin ncurses-bin 6.3-1 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl-base perl-base 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m5.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m5.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m5.9s INFO: Running scripts is_testable 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/is_testable_uninstallable'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/is_testable_uninstallable'] 0m5.9s INFO: Running scripts pre_test 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_test_root_password'] 0m6.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_test_root_password'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'show', '--no-all-versions', 'librg-reprof-bundle-perl'] 0m6.2s DUMP: Package: librg-reprof-bundle-perl Source: reprof Version: 1.0.1-7 Installed-Size: 21255 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, libai-fann-perl Description-en: protein secondary structure and accessibility predictor (perl module) 'reprof' is an improved implementation of 'prof', a popular protein secondary structure and accessibility predictor. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance. . This package provides the perl modules implementing 'reprof' along with the necessary data files. Description-md5: c445f7550b7b4d99a2f06d1b2366079b Homepage: https://rostlab.org/ Tag: devel::lang:perl, devel::library, implemented-in::perl Section: perl Priority: optional Filename: pool/main/r/reprof/librg-reprof-bundle-perl_1.0.1-7_all.deb Size: 7482484 MD5sum: e59bfbd3a9a03eb4b84068bffdef90c9 SHA256: 0b5ba1625110a8f0122946a3371f1d5b99e88cc5e0cfe6f9bda5f1799f4cde82 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'show', '--no-all-versions', 'librg-reprof-bundle-perl'] 0m6.2s INFO: apt-cache knows about the following packages: librg-reprof-bundle-perl 0m6.2s INFO: Running scripts pre_install 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_exceptions'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_exceptions'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_extras'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_extras'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy'] 0m6.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy', 'librg-reprof-bundle-perl'] 0m6.4s DUMP: librg-reprof-bundle-perl: Installed: (none) Candidate: 1.0.1-7 Version table: 1.0.1-7 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy', 'librg-reprof-bundle-perl'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', '-y', 'install', 'librg-reprof-bundle-perl'] 0m9.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libai-fann-perl libfann2 libgdbm-compat4 libgdbm6 libperl5.32 perl perl-modules-5.32 Suggested packages: libfann-dev libfann-doc gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl Recommended packages: netbase The following NEW packages will be installed: libai-fann-perl libfann2 libgdbm-compat4 libgdbm6 libperl5.32 librg-reprof-bundle-perl perl perl-modules-5.32 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 14.9 MB of archives. After this operation, 69.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.22-1 [82.1 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.22-1 [56.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.32.1-6 [293 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libfann2 amd64 2.2.0+ds-6 [66.5 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libai-fann-perl amd64 0.10-5+b1 [29.1 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 librg-reprof-bundle-perl all 1.0.1-7 [7482 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.9 MB in 0s (103 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6676 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.22-1_amd64.deb ... Unpacking libgdbm6:amd64 (1.22-1) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.22-1_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.22-1) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../3-libperl5.32_5.32.1-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-6) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.32.1-6_amd64.deb ... Unpacking perl (5.32.1-6) ... Selecting previously unselected package libfann2:amd64. Preparing to unpack .../5-libfann2_2.2.0+ds-6_amd64.deb ... Unpacking libfann2:amd64 (2.2.0+ds-6) ... Selecting previously unselected package libai-fann-perl. Preparing to unpack .../6-libai-fann-perl_0.10-5+b1_amd64.deb ... Unpacking libai-fann-perl (0.10-5+b1) ... Selecting previously unselected package librg-reprof-bundle-perl. Preparing to unpack .../7-librg-reprof-bundle-perl_1.0.1-7_all.deb ... Unpacking librg-reprof-bundle-perl (1.0.1-7) ... Setting up perl-modules-5.32 (5.32.1-6) ... Setting up libfann2:amd64 (2.2.0+ds-6) ... Setting up libgdbm6:amd64 (1.22-1) ... Setting up libgdbm-compat4:amd64 (1.22-1) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up perl (5.32.1-6) ... Setting up libai-fann-perl (0.10-5+b1) ... Setting up librg-reprof-bundle-perl (1.0.1-7) ... Processing triggers for libc-bin (2.33-2) ... 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', '-y', 'install', 'librg-reprof-bundle-perl'] 0m9.8s INFO: Running scripts post_install 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_install_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_install_exceptions'] 0m9.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m10.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m10.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpf_nyozzv to sid 0m10.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m10.2s INFO: Running scripts pre_distupgrade 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', 'update'] 0m13.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8887 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6669 kB] Fetched 15.7 MB in 2s (6535 kB/s) Reading package lists... 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', 'update'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', '-yf', 'dist-upgrade'] 0m16.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debianutils gcc-10-base gcc-11-base libc-bin libc6 libffi8 libgcc-s1 libgpg-error0 librg-reprof-bundle-perl libstdc++6 libsystemd0 libtinfo6 libudev1 libxxhash0 ncurses-base ncurses-bin 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 14.0 MB of archives. After this operation, 26.6 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.5-1 [93.7 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.3-2 [439 kB] Get:3 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-14 [207 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-14 [42.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-14 [577 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.33-3 [2831 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.33-3 [829 kB] Get:8 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.3-2 [278 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 250.3-1 [404 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.2-4 [24.7 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.43-3 [82.2 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.3-2 [349 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 250.3-1 [178 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.1-1 [27.6 kB] Get:15 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.3.0-14 [206 kB] Get:16 http://deb.debian.org/debian sid/main amd64 librg-reprof-bundle-perl all 1.0.1-8 [7480 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.0 MB in 0s (125 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8719 files and directories currently installed.) Preparing to unpack .../debianutils_5.5-1_amd64.deb ... Unpacking debianutils (5.5-1) over (4.11.2) ... Setting up debianutils (5.5-1) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8715 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10.3.0-14_amd64.deb ... Unpacking gcc-10-base:amd64 (10.3.0-14) over (10.3.0-13) ... Preparing to unpack .../librg-reprof-bundle-perl_1.0.1-8_all.deb ... Unpacking librg-reprof-bundle-perl (1.0.1-8) over (1.0.1-7) ... Setting up gcc-10-base:amd64 (10.3.0-14) ... Setting up librg-reprof-bundle-perl (1.0.1-8) ... Processing triggers for libc-bin (2.33-3) ... 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', '-yf', 'dist-upgrade'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.7s DUMP: 020be2b60400f5cf8a84a908b12ae55a - 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'show', '--no-all-versions', 'librg-reprof-bundle-perl'] 0m16.9s DUMP: Package: librg-reprof-bundle-perl Source: reprof Version: 1.0.1-8 Installed-Size: 21255 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, libai-fann-perl Description-en: protein secondary structure and accessibility predictor (perl module) 'reprof' is an improved implementation of 'prof', a popular protein secondary structure and accessibility predictor. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance. . This package provides the perl modules implementing 'reprof' along with the necessary data files. Description-md5: c445f7550b7b4d99a2f06d1b2366079b Homepage: https://rostlab.org/ Tag: devel::lang:perl, devel::library, implemented-in::perl Section: perl Priority: optional Filename: pool/main/r/reprof/librg-reprof-bundle-perl_1.0.1-8_all.deb Size: 7480020 MD5sum: 794b8fb466a37126a776bfb2704f9147 SHA256: d0a2207e27b2ee6636198ea33a361fb800d20cd0178a4f987a1c9e53564a816b 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'show', '--no-all-versions', 'librg-reprof-bundle-perl'] 0m16.9s INFO: apt-cache knows about the following packages: librg-reprof-bundle-perl 0m16.9s INFO: Running scripts pre_install 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy'] 0m16.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy', 'librg-reprof-bundle-perl'] 0m17.0s DUMP: librg-reprof-bundle-perl: Installed: 1.0.1-8 Candidate: 1.0.1-8 Version table: *** 1.0.1-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy', 'librg-reprof-bundle-perl'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', '-y', 'install', 'librg-reprof-bundle-perl'] 0m17.3s DUMP: Reading package lists... Building dependency tree... Reading state information... librg-reprof-bundle-perl is already the newest version (1.0.1-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', '-y', 'install', 'librg-reprof-bundle-perl'] 0m17.3s INFO: Running scripts post_install 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_install_exceptions'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_install_exceptions'] 0m17.3s INFO: Running scripts post_distupgrade 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m17.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m17.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m18.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m18.2s INFO: Running scripts pre_install 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_database-server'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_database-server'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_exceptions'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_exceptions'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_extras'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_extras'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy'] 0m18.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy', 'librg-reprof-bundle-perl'] 0m18.4s DUMP: librg-reprof-bundle-perl: Installed: 1.0.1-8 Candidate: 1.0.1-8 Version table: *** 1.0.1-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-cache', 'policy', 'librg-reprof-bundle-perl'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', '-y', 'install', 'librg-reprof-bundle-perl=1.0.1-8'] 0m18.9s DUMP: Reading package lists... Building dependency tree... Reading state information... librg-reprof-bundle-perl is already the newest version (1.0.1-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', '-y', 'install', 'librg-reprof-bundle-perl=1.0.1-8'] 0m18.9s INFO: Running scripts post_install 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_install_exceptions'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_install_exceptions'] 0m18.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m19.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m19.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', '-ac', '--ignore-obsolete'] 0m20.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', '-ac', '--ignore-obsolete'] 0m20.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.6s DUMP: 0.15.2 0m20.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.6s INFO: Running adequate version 0.15.2 now. 0m20.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'librg-reprof-bundle-perl'] 0m20.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'librg-reprof-bundle-perl'] 0m20.6s INFO: Running scripts pre_remove 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/pre_remove_exceptions'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.4s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.14 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.2-6 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.5-1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-14 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-14 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.61 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libai-fann-perl libai-fann-perl 0.10-5+b1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.14 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-3 install ok installed libc6:amd64 libc6 2.33-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libfann2:amd64 libfann2 2.2.0+ds-6 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.22-1 install ok installed libgdbm6:amd64 libgdbm6 1.22-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-6 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-6 install ok installed librg-reprof-bundle-perl librg-reprof-bundle-perl 1.0.1-8 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-6 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 250.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.3-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-6 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl perl 5.32.1-6 install ok installed perl-base perl-base 5.32.1-6 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', 'remove', 'libai-fann-perl', 'libfann2:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.32:amd64', 'perl', 'perl-modules-5.32', 'librg-reprof-bundle-perl'] 0m22.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libai-fann-perl libfann2 libgdbm-compat4 libgdbm6 libperl5.32 librg-reprof-bundle-perl perl perl-modules-5.32 0 upgraded, 0 newly installed, 8 to remove and 0 not upgraded. After this operation, 69.7 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8715 files and directories currently installed.) Removing librg-reprof-bundle-perl (1.0.1-8) ... Removing libai-fann-perl (0.10-5+b1) ... Removing libfann2:amd64 (2.2.0+ds-6) ... Removing perl (5.32.1-6) ... Removing libperl5.32:amd64 (5.32.1-6) ... Removing libgdbm-compat4:amd64 (1.22-1) ... Removing libgdbm6:amd64 (1.22-1) ... Removing perl-modules-5.32 (5.32.1-6) ... Processing triggers for libc-bin (2.33-3) ... 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', 'remove', 'libai-fann-perl', 'libfann2:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.32:amd64', 'perl', 'perl-modules-5.32', 'librg-reprof-bundle-perl'] 0m22.0s INFO: Running scripts post_remove 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_remove_exceptions'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_remove_exceptions'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg', '--purge', 'libai-fann-perl', 'libfann2:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.32:amd64', 'perl', 'perl-modules-5.32'] 0m22.0s DUMP: dpkg: warning: ignoring request to remove libai-fann-perl which isn't installed dpkg: warning: ignoring request to remove libfann2 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed (Reading database ... 6675 files and directories currently installed.) Purging configuration files for perl (5.32.1-6) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg', '--purge', 'libai-fann-perl', 'libfann2:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.32:amd64', 'perl', 'perl-modules-5.32'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg', '--purge', 'librg-reprof-bundle-perl'] 0m22.0s DUMP: dpkg: warning: ignoring request to remove librg-reprof-bundle-perl which isn't installed 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg', '--purge', 'librg-reprof-bundle-perl'] 0m22.0s INFO: Running scripts post_purge 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_purge_exceptions'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_purge_exceptions'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg', '--purge', '--pending'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg', '--purge', '--pending'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg', '--remove', '--pending'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg', '--remove', '--pending'] 0m22.1s INFO: Running scripts post_test 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_test_exceptions'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'tmp/scripts/post_test_exceptions'] 0m22.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m22.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg-divert', '--list'] 0m22.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'dpkg-divert', '--list'] 0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', 'clean'] 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv', 'apt-get', 'clean'] 0m22.4s DEBUG: Recording chroot state 0m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/shm'] 0m23.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/shm'] 0m23.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/console'] 0m23.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/console'] 0m23.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/ptmx'] 0m23.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/ptmx'] 0m23.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/pts'] 0m23.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/dev/pts'] 0m23.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/proc'] 0m23.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv/proc'] 0m23.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m23.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpf_nyozzv'] 0m23.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpf_nyozzv 0m23.5s INFO: PASS: Upgrading between Debian distributions. 0m23.5s INFO: PASS: All tests. 0m23.5s INFO: piuparts run ends. ret=0 End: 2022-01-19 06:03:52 GMT