Start: 2024-10-16 15:54:42 GMT [testing] Package: libsmithwaterman-dev Source: libsmithwaterman (0.0+git20160702.2610e25-12) Version: 0.0+git20160702.2610e25-12+b1 Installed-Size: 172 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libsmithwaterman0 (= 0.0+git20160702.2610e25-12+b1), libdisorder-dev Description: determine similar regions between two strings or genomic sequences (devel) Multi-Arch: same Homepage: https://github.com/ekg/smithwaterman Description-md5: 4b3b50c6f301c8d77b3ba93fc159d579 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/libs/libsmithwaterman/libsmithwaterman-dev_0.0+git20160702.2610e25-12+b1_amd64.deb Size: 40792 MD5sum: d77d12aa0f163daa9b6af809c180f38b SHA256: 7f55a7d7cb5183e2531bf0dc91474c89cd7c76e0e45db03622632e3f6c81be76 [sid] Package: libsmithwaterman-dev Source: libsmithwaterman (0.0+git20160702.2610e25-12) Version: 0.0+git20160702.2610e25-12+b2 Installed-Size: 171 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libsmithwaterman0 (= 0.0+git20160702.2610e25-12+b2), libdisorder-dev Description: determine similar regions between two strings or genomic sequences (devel) Multi-Arch: same Homepage: https://github.com/ekg/smithwaterman Description-md5: 4b3b50c6f301c8d77b3ba93fc159d579 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/libs/libsmithwaterman/libsmithwaterman-dev_0.0+git20160702.2610e25-12+b2_amd64.deb Size: 41392 MD5sum: 6669e8471f089239d49187dddcbab6f1 SHA256: f9e329c5cb5bd9c727e04cda8f83d529a87d15fc9500667315db022eb9b5e013 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libsmithwaterman-dev=0.0+git20160702.2610e25-12+b2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt libsmithwaterman-dev=0.0+git20160702.2610e25-12+b2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpwta5bq7_ 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpwta5bq7_ 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpwta5bq7_/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', 'update'] 0m1.5s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [169 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9314 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6225 kB] Fetched 15.7 MB in 1s (18.8 MB/s) Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils gcc-14-base gpgv hostname libblkid1 libgcc-s1 libmount1 libsmartcols1 libstdc++6 libsystemd0 libudev1 libuuid1 login mount util-linux 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3688 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.40.2-9 [105 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 hostname amd64 3.25 [11.0 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.40.2-9 [35.6 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.40.2-9 [168 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.40.2-9 [199 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.40.2-9 [139 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.40.2-9 [1216 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.40.2-9 [154 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.40.2-9 [81.4 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 gpgv amd64 2.2.44-1 [218 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 gcc-14-base amd64 14.2.0-6 [46.7 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libstdc++6 amd64 14.2.0-6 [715 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libgcc-s1 amd64 14.2.0-6 [72.8 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 256.7-1 [382 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 256.7-1 [145 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3688 kB in 0s (96.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5141 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.2-9_amd64.deb ... Unpacking bsdutils (1:2.40.2-9) over (1:2.40.2-8) ... Setting up bsdutils (1:2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5141 files and directories currently installed.) Preparing to unpack .../hostname_3.25_amd64.deb ... Unpacking hostname (3.25) over (3.23+nmu2) ... Setting up hostname (3.25) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5141 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40.2-9_amd64.deb ... Unpacking libuuid1:amd64 (2.40.2-9) over (2.40.2-8) ... Setting up libuuid1:amd64 (2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5141 files and directories currently installed.) Preparing to unpack .../libblkid1_2.40.2-9_amd64.deb ... Unpacking libblkid1:amd64 (2.40.2-9) over (2.40.2-8) ... Setting up libblkid1:amd64 (2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5141 files and directories currently installed.) Preparing to unpack .../libmount1_2.40.2-9_amd64.deb ... Unpacking libmount1:amd64 (2.40.2-9) over (2.40.2-8) ... Setting up libmount1:amd64 (2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5141 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.2-9_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40.2-9) over (2.40.2-8) ... Setting up libsmartcols1:amd64 (2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5141 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.2-9_amd64.deb ... Unpacking util-linux (2.40.2-9) over (2.40.2-8) ... Setting up util-linux (2.40.2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5141 files and directories currently installed.) Preparing to unpack .../mount_2.40.2-9_amd64.deb ... Unpacking mount (2.40.2-9) over (2.40.2-8) ... Preparing to unpack .../login_1%3a4.16.0-2+really2.40.2-9_amd64.deb ... Unpacking login (1:4.16.0-2+really2.40.2-9) over (1:4.16.0-2+really2.40.2-8) ... Preparing to unpack .../gpgv_2.2.44-1_amd64.deb ... Unpacking gpgv (2.2.44-1) over (2.2.43-8+b1) ... Setting up gpgv (2.2.44-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5140 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.2.0-6_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-6) over (14.2.0-3) ... Setting up gcc-14-base:amd64 (14.2.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5140 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-6_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-6) over (14.2.0-3) ... Setting up libstdc++6:amd64 (14.2.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5140 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-6_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-6) over (14.2.0-3) ... Setting up libgcc-s1:amd64 (14.2.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5140 files and directories currently installed.) Preparing to unpack .../libsystemd0_256.7-1_amd64.deb ... Unpacking libsystemd0:amd64 (256.7-1) over (256.6-1) ... Setting up libsystemd0:amd64 (256.7-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5140 files and directories currently installed.) Preparing to unpack .../libudev1_256.7-1_amd64.deb ... Unpacking libudev1:amd64 (256.7-1) over (256.6-1) ... Setting up libudev1:amd64 (256.7-1) ... Setting up mount (2.40.2-9) ... Setting up login (1:4.16.0-2+really2.40.2-9) ... Processing triggers for libc-bin (2.40-3) ... 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: e0f50955345325ea46c5be86946c5442 - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_dummy_users'] 0m3.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_dummy_users'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_forbid_home'] 0m3.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_forbid_home'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_minimize'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_minimize'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_zz_backports'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_setup_zz_backports'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.0s DUMP: install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b1 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-4 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-4+b1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 256.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.7-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.10-2 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m3.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m3.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m3.2s INFO: Running scripts is_testable 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/is_testable_uninstallable'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/is_testable_uninstallable'] 0m3.2s INFO: Running scripts pre_test 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_test_exceptions'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_test_exceptions'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_test_root_password'] 0m3.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_test_root_password'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'show', '--no-all-versions', 'libsmithwaterman-dev'] 0m3.4s DUMP: Package: libsmithwaterman-dev Source: libsmithwaterman (0.0+git20160702.2610e25-12) Version: 0.0+git20160702.2610e25-12+b1 Installed-Size: 172 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libsmithwaterman0 (= 0.0+git20160702.2610e25-12+b1), libdisorder-dev Description-en: determine similar regions between two strings or genomic sequences (devel) The Smith??Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith??Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. . This is the development package containing the statically linked library and the header files. Description-md5: 4b3b50c6f301c8d77b3ba93fc159d579 Multi-Arch: same Homepage: https://github.com/ekg/smithwaterman Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/libs/libsmithwaterman/libsmithwaterman-dev_0.0+git20160702.2610e25-12+b1_amd64.deb Size: 40792 MD5sum: d77d12aa0f163daa9b6af809c180f38b SHA256: 7f55a7d7cb5183e2531bf0dc91474c89cd7c76e0e45db03622632e3f6c81be76 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'show', '--no-all-versions', 'libsmithwaterman-dev'] 0m3.4s INFO: apt-cache knows about the following packages: libsmithwaterman-dev 0m3.4s INFO: Running scripts pre_install 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_database-server'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_database-server'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_exceptions'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_exceptions'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_extras'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_extras'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy'] 0m3.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy', 'libsmithwaterman-dev'] 0m3.4s DUMP: libsmithwaterman-dev: Installed: (none) Candidate: 0.0+git20160702.2610e25-12+b1 Version table: 0.0+git20160702.2610e25-12+b1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy', 'libsmithwaterman-dev'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', '-y', 'install', 'libsmithwaterman-dev'] 0m4.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libdisorder-dev libdisorder0 libsmithwaterman0 The following NEW packages will be installed: libdisorder-dev libdisorder0 libsmithwaterman-dev libsmithwaterman0 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 87.0 kB of archives. After this operation, 333 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-4+b1 [4884 B] Get:2 http://deb.debian.org/debian trixie/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-4+b1 [4860 B] Get:3 http://deb.debian.org/debian trixie/main amd64 libsmithwaterman0 amd64 0.0+git20160702.2610e25-12+b1 [36.5 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libsmithwaterman-dev amd64 0.0+git20160702.2610e25-12+b1 [40.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.0 kB in 0s (537 kB/s) Selecting previously unselected package libdisorder0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5144 files and directories currently installed.) Preparing to unpack .../libdisorder0_0.0.2+git20130809.8062ee1-4+b1_amd64.deb ... Unpacking libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b1) ... Selecting previously unselected package libdisorder-dev:amd64. Preparing to unpack .../libdisorder-dev_0.0.2+git20130809.8062ee1-4+b1_amd64.deb ... Unpacking libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b1) ... Selecting previously unselected package libsmithwaterman0:amd64. Preparing to unpack .../libsmithwaterman0_0.0+git20160702.2610e25-12+b1_amd64.deb ... Unpacking libsmithwaterman0:amd64 (0.0+git20160702.2610e25-12+b1) ... Selecting previously unselected package libsmithwaterman-dev:amd64. Preparing to unpack .../libsmithwaterman-dev_0.0+git20160702.2610e25-12+b1_amd64.deb ... Unpacking libsmithwaterman-dev:amd64 (0.0+git20160702.2610e25-12+b1) ... Setting up libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libsmithwaterman0:amd64 (0.0+git20160702.2610e25-12+b1) ... Setting up libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libsmithwaterman-dev:amd64 (0.0+git20160702.2610e25-12+b1) ... Processing triggers for libc-bin (2.40-3) ... 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', '-y', 'install', 'libsmithwaterman-dev'] 0m4.0s INFO: Running scripts post_install 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_install_exceptions'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_install_exceptions'] 0m4.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m4.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m4.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpwta5bq7_ to sid 0m4.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m4.2s INFO: Running scripts pre_distupgrade 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_distupgrade_exceptions'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_distupgrade_exceptions'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', 'update'] 0m6.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7340 kB] Fetched 17.6 MB in 1s (12.1 MB/s) Reading package lists... 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', 'update'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libattr1 libaudit-common libaudit1 libdb5.3t64 libdisorder-dev libdisorder0 libsmithwaterman-dev libsmithwaterman0 perl-base sysvinit-utils tzdata 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2844 kB of archives. After this operation, 91.1 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.40.0-6 [1675 kB] Get:2 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.10-3 [33.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-2 [22.7 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.0.1-1 [12.3 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.0.1-1 [54.5 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Get:7 http://deb.debian.org/debian sid/main amd64 tzdata all 2024b-3 [255 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-4+b2 [4912 B] Get:9 http://deb.debian.org/debian sid/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-4+b2 [4908 B] Get:10 http://deb.debian.org/debian sid/main amd64 libsmithwaterman-dev amd64 0.0+git20160702.2610e25-12+b2 [41.4 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsmithwaterman0 amd64 0.0+git20160702.2610e25-12+b2 [36.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2844 kB in 0s (68.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5180 files and directories currently installed.) Preparing to unpack .../perl-base_5.40.0-6_amd64.deb ... Unpacking perl-base (5.40.0-6) over (5.38.2-5) ... Setting up perl-base (5.40.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5179 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.10-3_amd64.deb ... Unpacking sysvinit-utils (3.10-3) over (3.10-2) ... Setting up sysvinit-utils (3.10-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5179 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-2_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.2-2) over (1:2.5.2-1) ... Setting up libattr1:amd64 (1:2.5.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5179 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.1-1_all.deb ... Unpacking libaudit-common (1:4.0.1-1) over (1:3.1.2-4) ... Setting up libaudit-common (1:4.0.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5179 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.1-1) over (1:3.1.2-4+b1) ... Setting up libaudit1:amd64 (1:4.0.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5178 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-9) over (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5178 files and directories currently installed.) Preparing to unpack .../tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) over (2024a-4) ... Preparing to unpack .../libdisorder-dev_0.0.2+git20130809.8062ee1-4+b2_amd64.deb ... Unpacking libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b2) over (0.0.2+git20130809.8062ee1-4+b1) ... Preparing to unpack .../libdisorder0_0.0.2+git20130809.8062ee1-4+b2_amd64.deb ... Unpacking libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b2) over (0.0.2+git20130809.8062ee1-4+b1) ... Preparing to unpack .../libsmithwaterman-dev_0.0+git20160702.2610e25-12+b2_amd64.deb ... Unpacking libsmithwaterman-dev:amd64 (0.0+git20160702.2610e25-12+b2) over (0.0+git20160702.2610e25-12+b1) ... Preparing to unpack .../libsmithwaterman0_0.0+git20160702.2610e25-12+b2_amd64.deb ... Unpacking libsmithwaterman0:amd64 (0.0+git20160702.2610e25-12+b2) over (0.0+git20160702.2610e25-12+b1) ... Setting up libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up libsmithwaterman0:amd64 (0.0+git20160702.2610e25-12+b2) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Oct 16 15:54:49 UTC 2024. Universal Time is now: Wed Oct 16 15:54:49 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up libsmithwaterman-dev:amd64 (0.0+git20160702.2610e25-12+b2) ... Processing triggers for libc-bin (2.40-3) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.2s DUMP: 3ed7186a787777f520660aad28a30394 - 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'show', '--no-all-versions', 'libsmithwaterman-dev'] 0m7.3s DUMP: Package: libsmithwaterman-dev Source: libsmithwaterman (0.0+git20160702.2610e25-12) Version: 0.0+git20160702.2610e25-12+b2 Installed-Size: 171 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libsmithwaterman0 (= 0.0+git20160702.2610e25-12+b2), libdisorder-dev Description-en: determine similar regions between two strings or genomic sequences (devel) The Smith??Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith??Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. . This is the development package containing the statically linked library and the header files. Description-md5: 4b3b50c6f301c8d77b3ba93fc159d579 Multi-Arch: same Homepage: https://github.com/ekg/smithwaterman Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/libs/libsmithwaterman/libsmithwaterman-dev_0.0+git20160702.2610e25-12+b2_amd64.deb Size: 41392 MD5sum: 6669e8471f089239d49187dddcbab6f1 SHA256: f9e329c5cb5bd9c727e04cda8f83d529a87d15fc9500667315db022eb9b5e013 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'show', '--no-all-versions', 'libsmithwaterman-dev'] 0m7.3s INFO: apt-cache knows about the following packages: libsmithwaterman-dev 0m7.3s INFO: Running scripts pre_install 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_database-server'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_database-server'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_exceptions'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_exceptions'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_extras'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_extras'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy'] 0m7.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy', 'libsmithwaterman-dev'] 0m7.4s DUMP: libsmithwaterman-dev: Installed: 0.0+git20160702.2610e25-12+b2 Candidate: 0.0+git20160702.2610e25-12+b2 Version table: *** 0.0+git20160702.2610e25-12+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy', 'libsmithwaterman-dev'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', '-y', 'install', 'libsmithwaterman-dev'] 0m7.7s DUMP: Reading package lists... Building dependency tree... Reading state information... libsmithwaterman-dev is already the newest version (0.0+git20160702.2610e25-12+b2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', '-y', 'install', 'libsmithwaterman-dev'] 0m7.7s INFO: Running scripts post_install 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_install_exceptions'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_install_exceptions'] 0m7.7s INFO: Running scripts post_distupgrade 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_distupgrade_exceptions'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_distupgrade_exceptions'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_distupgrade_zz_backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_distupgrade_zz_backports'] 0m7.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m8.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m8.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m8.2s INFO: Running scripts pre_install 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy'] 0m8.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy', 'libsmithwaterman-dev'] 0m8.3s DUMP: libsmithwaterman-dev: Installed: 0.0+git20160702.2610e25-12+b2 Candidate: 0.0+git20160702.2610e25-12+b2 Version table: *** 0.0+git20160702.2610e25-12+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-cache', 'policy', 'libsmithwaterman-dev'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', '-y', 'install', 'libsmithwaterman-dev=0.0+git20160702.2610e25-12+b2'] 0m8.5s DUMP: Reading package lists... Building dependency tree... Reading state information... libsmithwaterman-dev is already the newest version (0.0+git20160702.2610e25-12+b2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', '-y', 'install', 'libsmithwaterman-dev=0.0+git20160702.2610e25-12+b2'] 0m8.5s INFO: Running scripts post_install 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_install_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_install_exceptions'] 0m8.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m8.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m8.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', '-ac', '--ignore-obsolete'] 0m9.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', '-ac', '--ignore-obsolete'] 0m9.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m9.2s DUMP: 0.15.6 0m9.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m9.2s INFO: Running adequate version 0.15.6 now. 0m9.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'libsmithwaterman-dev'] 0m9.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'libsmithwaterman-dev'] 0m9.2s INFO: Running scripts pre_remove 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_exceptions'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/pre_remove_exceptions'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DUMP: install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b1 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libdisorder-dev:amd64 libdisorder-dev 0.0.2+git20130809.8062ee1-4+b2 install ok installed libdisorder0:amd64 libdisorder0 0.0.2+git20130809.8062ee1-4+b2 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libsmithwaterman-dev:amd64 libsmithwaterman-dev 0.0+git20160702.2610e25-12+b2 install ok installed libsmithwaterman0:amd64 libsmithwaterman0 0.0+git20160702.2610e25-12+b2 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 256.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.7-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.40.0-6 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.10-3 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', 'remove', 'libdisorder-dev:amd64', 'libdisorder0:amd64', 'libsmithwaterman-dev:amd64', 'libsmithwaterman0:amd64'] 0m10.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libdisorder-dev libdisorder0 libsmithwaterman-dev libsmithwaterman0 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. After this operation, 336 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5166 files and directories currently installed.) Removing libsmithwaterman-dev:amd64 (0.0+git20160702.2610e25-12+b2) ... Removing libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Removing libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Removing libsmithwaterman0:amd64 (0.0+git20160702.2610e25-12+b2) ... Processing triggers for libc-bin (2.40-3) ... 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', 'remove', 'libdisorder-dev:amd64', 'libdisorder0:amd64', 'libsmithwaterman-dev:amd64', 'libsmithwaterman0:amd64'] 0m10.0s INFO: Running scripts post_remove 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_remove_exceptions'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_remove_exceptions'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg', '--purge', 'libdisorder-dev:amd64', 'libdisorder0:amd64', 'libsmithwaterman-dev:amd64', 'libsmithwaterman0:amd64'] 0m10.0s DUMP: dpkg: warning: ignoring request to remove libdisorder-dev which isn't installed dpkg: warning: ignoring request to remove libdisorder0 which isn't installed dpkg: warning: ignoring request to remove libsmithwaterman-dev which isn't installed dpkg: warning: ignoring request to remove libsmithwaterman0 which isn't installed 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg', '--purge', 'libdisorder-dev:amd64', 'libdisorder0:amd64', 'libsmithwaterman-dev:amd64', 'libsmithwaterman0:amd64'] 0m10.0s INFO: Running scripts post_purge 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_purge_exceptions'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_purge_exceptions'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg', '--purge', '--pending'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg', '--purge', '--pending'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg', '--remove', '--pending'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg', '--remove', '--pending'] 0m10.0s INFO: Running scripts post_test 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_test_exceptions'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'tmp/scripts/post_test_exceptions'] 0m10.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m10.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg-divert', '--list'] 0m10.2s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'dpkg-divert', '--list'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', 'clean'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_', 'apt-get', 'clean'] 0m10.3s DEBUG: Recording chroot state 0m10.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/shm'] 0m10.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/shm'] 0m10.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/console'] 0m10.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/console'] 0m10.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/ptmx'] 0m10.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/ptmx'] 0m10.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/pts'] 0m10.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/dev/pts'] 0m10.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/proc'] 0m10.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_/proc'] 0m10.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m10.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwta5bq7_'] 0m10.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpwta5bq7_ 0m10.9s INFO: PASS: Upgrading between Debian distributions. 0m10.9s INFO: PASS: All tests. 0m10.9s INFO: piuparts run ends. ret=0 End: 2024-10-16 15:54:53 GMT