Start: 2020-02-27 00:35:07 GMT [testing] Package: loki-doc Source: loki Version: 2.4.7.4-10 Installed-Size: 230 Maintainer: Debian Med Packaging Team Architecture: all Enhances: loki Description: MCMC linkage analysis on general pedigrees (PS manual) Description-md5: cdb20636f5859ad29987ae202873ef21 Tag: field::biology, made-of::postscript, role::documentation Section: doc Priority: optional Filename: pool/main/l/loki/loki-doc_2.4.7.4-10_all.deb Size: 225704 MD5sum: f63455754528c21673ac17aa43fb6ce3 SHA256: 338021c772298de3f0d8df60b643993509a738c17a2152e5d68f011c2ecff3e5 [sid] Package: loki-doc Source: loki Version: 2.4.7.4-10 Installed-Size: 230 Maintainer: Debian Med Packaging Team Architecture: all Enhances: loki Description: MCMC linkage analysis on general pedigrees (PS manual) Description-md5: cdb20636f5859ad29987ae202873ef21 Tag: field::biology, made-of::postscript, role::documentation Section: doc Priority: optional Filename: pool/main/l/loki/loki-doc_2.4.7.4-10_all.deb Size: 225704 MD5sum: f63455754528c21673ac17aa43fb6ce3 SHA256: 338021c772298de3f0d8df60b643993509a738c17a2152e5d68f011c2ecff3e5 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt loki-doc=2.4.7.4-10 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.1 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt loki-doc=2.4.7.4-10 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-8-amd64 #1 SMP Debian 4.19.98-1 (2020-01-26) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpscbg35wm 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpscbg35wm 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ bullseye main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpscbg35wm/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', 'update'] 0m4.1s DUMP: Get:1 http://mirror-ubc.debian.org/debian bullseye InRelease [113 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages [7688 kB] Fetched 7801 kB in 1s (5583 kB/s) Reading package lists... 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', 'update'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.0s DUMP: 2ec3a461fa2f76dc1cb26a6a803b5bbc - 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.0s INFO: Running scripts post_setup 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_dummy_users'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_dummy_users'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_forbid_home'] 0m13.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_forbid_home'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_force-unsafe-io'] 0m13.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_force-unsafe-io'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_minimize'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_minimize'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_squeeze-backports'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_squeeze-backports'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_zz_backports'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_setup_zz_backports'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m13.9s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.4 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-5 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.5-2 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10-20200222-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-29 install ok installed gpgv gpgv 2.2.19-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.9-3+b1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-5 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2+b1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.29-10 install ok installed libc6:amd64 libc6 2.29-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.10-10 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.251 install ok installed libext2fs2:amd64 libext2fs2 1.45.5-2 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi7:amd64 libffi7 3.3-3 install ok installed libgcc-s1:amd64 libgcc-s1 10-20200222-1 install ok installed libgcc1 libgcc1 1:10-20200222-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.12-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.37-1 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20191019-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.20-1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.2-2 install ok installed libselinux1:amd64 libselinux1 3.0-1+b1 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1+b1 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.5-2 install ok installed libstdc++6:amd64 libstdc++6 10-20200222-1 install ok installed libsystemd0:amd64 libsystemd0 244.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20191019-1 install ok installed libudev1:amd64 libudev1 244.3-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-3 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20191019-1 install ok installed ncurses-bin ncurses-bin 6.1+20191019-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.0-9 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-2.1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1.2 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m13.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m14.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m14.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m14.6s INFO: Running scripts is_testable 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/is_testable_uninstallable'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/is_testable_uninstallable'] 0m14.6s INFO: Running scripts pre_test 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_test_exceptions'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_test_exceptions'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_test_root_password'] 0m14.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_test_root_password'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'show', '--no-all-versions', 'loki-doc'] 0m15.0s DUMP: Package: loki-doc Source: loki Version: 2.4.7.4-10 Installed-Size: 230 Maintainer: Debian Med Packaging Team Architecture: all Enhances: loki Description-en: MCMC linkage analysis on general pedigrees (PS manual) Performs Markov chain Monte Carlo multipoint linkage analysis on large, complex pedigrees. The current package supports analyses on quantitative traits only, although this restriction will be lifted in later versions. Joint estimation of QTL number, position and effects uses Reversible Jump MCMC. It is also possible to perform affected only IBD sharing analyses. . Documentation on how to use Simon Heath's "prep" and "loki" tools for MCMC genetic linkage and IBD analysis on general pedigrees. Description-md5: cdb20636f5859ad29987ae202873ef21 Tag: field::biology, made-of::postscript, role::documentation Section: doc Priority: optional Filename: pool/main/l/loki/loki-doc_2.4.7.4-10_all.deb Size: 225704 MD5sum: f63455754528c21673ac17aa43fb6ce3 SHA256: 338021c772298de3f0d8df60b643993509a738c17a2152e5d68f011c2ecff3e5 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'show', '--no-all-versions', 'loki-doc'] 0m15.0s INFO: apt-cache knows about the following packages: loki-doc 0m15.0s INFO: Running scripts pre_install 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_database-server'] 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_database-server'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_exceptions'] 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_exceptions'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_extras'] 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_extras'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy'] 0m15.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy', 'loki-doc'] 0m15.2s DUMP: loki-doc: Installed: (none) Candidate: 2.4.7.4-10 Version table: 2.4.7.4-10 500 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy', 'loki-doc'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', '-y', 'install', 'loki-doc'] 0m16.3s DUMP: Reading package lists... Building dependency tree... The following NEW packages will be installed: loki-doc 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 226 kB of archives. After this operation, 236 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 loki-doc all 2.4.7.4-10 [226 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 226 kB in 0s (5542 kB/s) Selecting previously unselected package loki-doc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6544 files and directories currently installed.) Preparing to unpack .../loki-doc_2.4.7.4-10_all.deb ... Unpacking loki-doc (2.4.7.4-10) ... Setting up loki-doc (2.4.7.4-10) ... 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', '-y', 'install', 'loki-doc'] 0m16.3s INFO: Running scripts post_install 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_install_exceptions'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_install_exceptions'] 0m16.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m16.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m16.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpscbg35wm to sid 0m16.9s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m16.9s INFO: Running scripts pre_distupgrade 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', 'update'] 0m21.5s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [142 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8288 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6196 kB] Fetched 14.6 MB in 3s (4348 kB/s) Reading package lists... 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', 'update'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', '-yf', 'dist-upgrade'] 0m24.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash gcc-9-base gzip libgcrypt20 libgmp10 zlib1g 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2606 kB of archives. After this operation, 5120 B of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 bash amd64 5.0-6 [1379 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 gzip amd64 1.10-1 [131 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.8.5-5 [557 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [253 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 gcc-9-base amd64 9.2.1-30 [196 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2606 kB in 0s (33.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6554 files and directories currently installed.) Preparing to unpack .../archives/bash_5.0-6_amd64.deb ... Unpacking bash (5.0-6) over (5.0-5) ... Setting up bash (5.0-6) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6554 files and directories currently installed.) Preparing to unpack .../archives/gzip_1.10-1_amd64.deb ... Unpacking gzip (1.10-1) over (1.9-3+b1) ... Setting up gzip (1.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6553 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.5-5_amd64.deb ... Unpacking libgcrypt20:amd64 (1.8.5-5) over (1.8.5-3) ... Setting up libgcrypt20:amd64 (1.8.5-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6553 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-4_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.0+dfsg-4) over (2:6.1.2+dfsg-4) ... Setting up libgmp10:amd64 (2:6.2.0+dfsg-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6553 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-2) over (1:1.2.11.dfsg-1.2) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6553 files and directories currently installed.) Preparing to unpack .../gcc-9-base_9.2.1-30_amd64.deb ... Unpacking gcc-9-base:amd64 (9.2.1-30) over (9.2.1-29) ... Setting up gcc-9-base:amd64 (9.2.1-30) ... Processing triggers for libc-bin (2.29-10) ... 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', '-yf', 'dist-upgrade'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m25.2s DUMP: 24cf460bf2bcd55cf818718e15fecee4 - 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'show', '--no-all-versions', 'loki-doc'] 0m25.6s DUMP: Package: loki-doc Source: loki Version: 2.4.7.4-10 Installed-Size: 230 Maintainer: Debian Med Packaging Team Architecture: all Enhances: loki Description-en: MCMC linkage analysis on general pedigrees (PS manual) Performs Markov chain Monte Carlo multipoint linkage analysis on large, complex pedigrees. The current package supports analyses on quantitative traits only, although this restriction will be lifted in later versions. Joint estimation of QTL number, position and effects uses Reversible Jump MCMC. It is also possible to perform affected only IBD sharing analyses. . Documentation on how to use Simon Heath's "prep" and "loki" tools for MCMC genetic linkage and IBD analysis on general pedigrees. Description-md5: cdb20636f5859ad29987ae202873ef21 Tag: field::biology, made-of::postscript, role::documentation Section: doc Priority: optional Filename: pool/main/l/loki/loki-doc_2.4.7.4-10_all.deb Size: 225704 MD5sum: f63455754528c21673ac17aa43fb6ce3 SHA256: 338021c772298de3f0d8df60b643993509a738c17a2152e5d68f011c2ecff3e5 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'show', '--no-all-versions', 'loki-doc'] 0m25.6s INFO: apt-cache knows about the following packages: loki-doc 0m25.6s INFO: Running scripts pre_install 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_database-server'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_database-server'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_exceptions'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_exceptions'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_extras'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_extras'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy'] 0m25.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy', 'loki-doc'] 0m26.0s DUMP: loki-doc: Installed: 2.4.7.4-10 Candidate: 2.4.7.4-10 Version table: *** 2.4.7.4-10 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy', 'loki-doc'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', '-y', 'install', 'loki-doc'] 0m27.0s DUMP: Reading package lists... Building dependency tree... Reading state information... loki-doc is already the newest version (2.4.7.4-10). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', '-y', 'install', 'loki-doc'] 0m27.0s INFO: Running scripts post_install 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_install_exceptions'] 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_install_exceptions'] 0m27.0s INFO: Running scripts post_distupgrade 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m28.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m28.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m28.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m28.9s INFO: Running scripts pre_install 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_database-server'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_database-server'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_exceptions'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_exceptions'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_extras'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_extras'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy'] 0m29.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy', 'loki-doc'] 0m29.2s DUMP: loki-doc: Installed: 2.4.7.4-10 Candidate: 2.4.7.4-10 Version table: *** 2.4.7.4-10 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-cache', 'policy', 'loki-doc'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', '-y', 'install', 'loki-doc=2.4.7.4-10'] 0m30.3s DUMP: Reading package lists... Building dependency tree... Reading state information... loki-doc is already the newest version (2.4.7.4-10). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', '-y', 'install', 'loki-doc=2.4.7.4-10'] 0m30.3s INFO: Running scripts post_install 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_install_exceptions'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_install_exceptions'] 0m30.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m31.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m31.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', '-ac', '--ignore-obsolete'] 0m32.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', '-ac', '--ignore-obsolete'] 0m32.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.8s DUMP: 0.15.2 0m32.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.8s INFO: Running adequate version 0.15.2 now. 0m32.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'loki-doc'] 0m32.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'loki-doc'] 0m32.9s INFO: Running scripts pre_remove 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_exceptions'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/pre_remove_exceptions'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.6s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.4 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-6 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.5-2 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10-20200222-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-30 install ok installed gpgv gpgv 2.2.19-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-5 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2+b1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.29-10 install ok installed libc6:amd64 libc6 2.29-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.10-10 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.251 install ok installed libext2fs2:amd64 libext2fs2 1.45.5-2 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi7:amd64 libffi7 3.3-3 install ok installed libgcc-s1:amd64 libgcc-s1 10-20200222-1 install ok installed libgcc1 libgcc1 1:10-20200222-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.12-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.37-1 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20191019-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.20-1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.2-2 install ok installed libselinux1:amd64 libselinux1 3.0-1+b1 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1+b1 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.5-2 install ok installed libstdc++6:amd64 libstdc++6 10-20200222-1 install ok installed libsystemd0:amd64 libsystemd0 244.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20191019-1 install ok installed libudev1:amd64 libudev1 244.3-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-3 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.5-2 install ok installed loki-doc loki-doc 2.4.7.4-10 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20191019-1 install ok installed ncurses-bin ncurses-bin 6.1+20191019-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.0-9 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-2.1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', 'remove', 'loki-doc'] 0m35.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: loki-doc 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 236 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6553 files and directories currently installed.) Removing loki-doc (2.4.7.4-10) ... 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', 'remove', 'loki-doc'] 0m35.5s INFO: Running scripts post_remove 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_remove_exceptions'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_remove_exceptions'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg', '--purge', 'loki-doc'] 0m35.5s DUMP: dpkg: warning: ignoring request to remove loki-doc which isn't installed 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg', '--purge', 'loki-doc'] 0m35.5s INFO: Running scripts post_purge 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_purge_exceptions'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_purge_exceptions'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg', '--purge', '--pending'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg', '--purge', '--pending'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg', '--remove', '--pending'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg', '--remove', '--pending'] 0m35.6s INFO: Running scripts post_test 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_test_exceptions'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'tmp/scripts/post_test_exceptions'] 0m35.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m36.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg-divert', '--list'] 0m36.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'dpkg-divert', '--list'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', 'clean'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpscbg35wm', 'apt-get', 'clean'] 0m36.0s DEBUG: Recording chroot state 0m36.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/shm'] 0m36.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/shm'] 0m36.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/console'] 0m36.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/console'] 0m36.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/ptmx'] 0m36.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/ptmx'] 0m36.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/pts'] 0m36.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/dev/pts'] 0m36.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/proc'] 0m36.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpscbg35wm/proc'] 0m36.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m37.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpscbg35wm'] 0m37.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpscbg35wm 0m37.0s INFO: PASS: Upgrading between Debian distributions. 0m37.0s INFO: PASS: All tests. 0m37.0s INFO: piuparts run ends. ret=0 End: 2020-02-27 00:35:44 GMT