Start: 2022-10-07 09:11:01 GMT [testing] Package: lumpy-sv-examples Source: lumpy-sv Version: 0.3.1+dfsg-6 Installed-Size: 54398 Maintainer: Debian Med Packaging Team Architecture: all Enhances: lumpy-sv Description: general probabilistic framework for structural variant discovery (data) Multi-Arch: foreign Homepage: https://github.com/arq5x/lumpy-sv Description-md5: 0d30dd2639cc1bf538f85568ced20ff2 Section: science Priority: optional Filename: pool/main/l/lumpy-sv/lumpy-sv-examples_0.3.1+dfsg-6_all.deb Size: 55664828 MD5sum: 206d444330d74432f929c122a245ab1b SHA256: b864860aa5d53ed76d9eddc1978ac695c17a4f23cc1011c71c18f356cdeea0f1 [sid] Package: lumpy-sv-examples Source: lumpy-sv Version: 0.3.1+dfsg-7 Installed-Size: 53323 Maintainer: Debian Med Packaging Team Architecture: all Enhances: lumpy-sv Description: general probabilistic framework for structural variant discovery (data) Multi-Arch: foreign Homepage: https://github.com/arq5x/lumpy-sv Description-md5: 0d30dd2639cc1bf538f85568ced20ff2 Section: science Priority: optional Filename: pool/main/l/lumpy-sv/lumpy-sv-examples_0.3.1+dfsg-7_all.deb Size: 54563848 MD5sum: f9cd1a1633a63c0c37ebe243a6dee896 SHA256: 0d82651dd61a1ac1c0616f4d53ba2c7dea79367e9f46e0c8566324cf1efed074 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt lumpy-sv-examples=0.3.1+dfsg-7 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt lumpy-sv-examples=0.3.1+dfsg-7 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp0ko5wyme 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp0ko5wyme 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/proc'] 0m2.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/proc'] 0m2.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/pts'] 0m2.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/pts'] 0m2.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/ptmx'] 0m2.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/ptmx'] 0m2.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/console'] 0m2.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/console'] 0m2.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/shm'] 0m2.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/shm'] 0m2.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.7s DEBUG: Created policy-rc.d and chmodded it. 0m2.7s DEBUG: Created resolv.conf. 0m2.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp0ko5wyme/tmp/scripts/ 0m2.7s INFO: Running scripts post_chroot_unpack 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', 'update'] 0m6.2s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [161 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8638 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5852 kB] Fetched 14.7 MB in 3s (5261 kB/s) Reading package lists... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', 'update'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 70.3 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.3 [70.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.3 kB in 0s (2636 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8603 files and directories currently installed.) Preparing to unpack .../base-files_12.3_amd64.deb ... Unpacking base-files (12.3) over (12.2) ... Setting up base-files (12.3) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.3s DUMP: 7d37e70ff6e6c8f460be6005d26b77c0 - 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.3s INFO: Running scripts post_setup 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_dummy_users'] 0m9.4s DUMP: useradd warning: dummy100's uid 100 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_dummy_users'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_forbid_home'] 0m9.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_forbid_home'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_minimize'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_minimize'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_zz_backports'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_setup_zz_backports'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DUMP: install ok installed adduser adduser 3.129 install ok installed apt apt 2.5.3 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2~rc2-2 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-3 install ok installed gpgv gpgv 2.2.39-1 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.3 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.35-1 install ok installed libc6:amd64 libc6 2.35-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.264 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-2 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-2 install ok installed libgdbm6:amd64 libgdbm6 1.23-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-2 install ok installed libpam-runtime libpam-runtime 1.5.2-2 install ok installed libpam0g:amd64 libpam0g 1.5.2-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libperl5.34:amd64 libperl5.34 5.34.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b2 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b2 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.6~rc1-1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 251.4-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-2 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.4-3 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.6~rc1-1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl perl 5.34.0-5 install ok installed perl-base perl-base 5.34.0-5 install ok installed perl-modules-5.34 perl-modules-5.34 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-6 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022d-1 install ok installed usr-is-merged usr-is-merged 31 install ok installed usrmerge usrmerge 31 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m9.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m10.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m10.0s INFO: Running scripts is_testable 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/is_testable_uninstallable'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/is_testable_uninstallable'] 0m10.0s INFO: Running scripts pre_test 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_test_exceptions'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_test_exceptions'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_test_root_password'] 0m10.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_test_root_password'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'show', '--no-all-versions', 'lumpy-sv-examples'] 0m10.2s DUMP: Package: lumpy-sv-examples Source: lumpy-sv Version: 0.3.1+dfsg-6 Installed-Size: 54398 Maintainer: Debian Med Packaging Team Architecture: all Enhances: lumpy-sv Description-en: general probabilistic framework for structural variant discovery (data) LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency. . This package contains some example data and scripts to test lumpy-sv. Description-md5: 0d30dd2639cc1bf538f85568ced20ff2 Multi-Arch: foreign Homepage: https://github.com/arq5x/lumpy-sv Section: science Priority: optional Filename: pool/main/l/lumpy-sv/lumpy-sv-examples_0.3.1+dfsg-6_all.deb Size: 55664828 MD5sum: 206d444330d74432f929c122a245ab1b SHA256: b864860aa5d53ed76d9eddc1978ac695c17a4f23cc1011c71c18f356cdeea0f1 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'show', '--no-all-versions', 'lumpy-sv-examples'] 0m10.2s INFO: apt-cache knows about the following packages: lumpy-sv-examples 0m10.2s INFO: Running scripts pre_install 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_database-server'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_database-server'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_exceptions'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_exceptions'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy'] 0m10.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy', 'lumpy-sv-examples'] 0m10.5s DUMP: lumpy-sv-examples: Installed: (none) Candidate: 0.3.1+dfsg-6 Version table: 0.3.1+dfsg-6 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy', 'lumpy-sv-examples'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', '-y', 'install', 'lumpy-sv-examples'] 0m14.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: lumpy-sv-examples 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 55.7 MB of archives. After this operation, 55.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 lumpy-sv-examples all 0.3.1+dfsg-6 [55.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.7 MB in 3s (19.9 MB/s) Selecting previously unselected package lumpy-sv-examples. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8605 files and directories currently installed.) Preparing to unpack .../lumpy-sv-examples_0.3.1+dfsg-6_all.deb ... Unpacking lumpy-sv-examples (0.3.1+dfsg-6) ... Setting up lumpy-sv-examples (0.3.1+dfsg-6) ... 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', '-y', 'install', 'lumpy-sv-examples'] 0m14.5s INFO: Running scripts post_install 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_install_exceptions'] 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_install_exceptions'] 0m14.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m14.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m14.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp0ko5wyme to sid 0m14.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m14.8s INFO: Running scripts pre_distupgrade 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', 'update'] 0m20.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9374 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6926 kB] Fetched 16.5 MB in 4s (3773 kB/s) Reading package lists... 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', 'update'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', '-yf', 'dist-upgrade'] 0m27.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash gcc-12-base grep libc-bin libc6 libffi8 libgcc-s1 libgnutls30 libpam-modules libpam-modules-bin libpam-runtime libpam0g libstdc++6 libsystemd0 libudev1 libunistring2 login lumpy-sv-examples passwd usr-is-merged usrmerge 21 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 66.1 MB of archives. After this operation, 635 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2-1 [1524 kB] Get:2 http://deb.debian.org/debian sid/main amd64 grep amd64 3.8-2 [432 kB] Get:3 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.12.3+dfsg1-1 [656 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.2.0-5 [208 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 12.2.0-5 [49.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 12.2.0-5 [613 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.35-2 [2944 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.35-2 [822 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-5 [131 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-5 [115 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-5 [330 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-5 [200 kB] Get:13 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.12.3+dfsg1-1 [1024 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.3-2 [26.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libunistring2 amd64 1.0-2 [437 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.7.8-2 [1417 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 251.5-1 [414 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 251.5-1 [187 kB] Get:19 http://deb.debian.org/debian sid/main amd64 usr-is-merged all 32 [5524 B] Get:20 http://deb.debian.org/debian sid/main amd64 usrmerge all 32 [13.2 kB] Get:21 http://deb.debian.org/debian sid/main amd64 lumpy-sv-examples all 0.3.1+dfsg-7 [54.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 66.1 MB in 3s (22.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8642 files and directories currently installed.) Preparing to unpack .../archives/bash_5.2-1_amd64.deb ... Unpacking bash (5.2-1) over (5.2~rc2-2) ... Setting up bash (5.2-1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8642 files and directories currently installed.) Preparing to unpack .../archives/grep_3.8-2_amd64.deb ... Unpacking grep (3.8-2) over (3.7-1) ... Setting up grep (3.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8644 files and directories currently installed.) Preparing to unpack .../login_1%3a4.12.3+dfsg1-1_amd64.deb ... Unpacking login (1:4.12.3+dfsg1-1) over (1:4.11.1+dfsg1-2) ... Setting up login (1:4.12.3+dfsg1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8656 files and directories currently installed.) Preparing to unpack .../gcc-12-base_12.2.0-5_amd64.deb ... Unpacking gcc-12-base:amd64 (12.2.0-5) over (12.2.0-3) ... Setting up gcc-12-base:amd64 (12.2.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8656 files and directories currently installed.) Preparing to unpack .../libgcc-s1_12.2.0-5_amd64.deb ... Unpacking libgcc-s1:amd64 (12.2.0-5) over (12.2.0-3) ... Setting up libgcc-s1:amd64 (12.2.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8656 files and directories currently installed.) Preparing to unpack .../libstdc++6_12.2.0-5_amd64.deb ... Unpacking libstdc++6:amd64 (12.2.0-5) over (12.2.0-3) ... Setting up libstdc++6:amd64 (12.2.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8656 files and directories currently installed.) Preparing to unpack .../libc6_2.35-2_amd64.deb ... Unpacking libc6:amd64 (2.35-2) over (2.35-1) ... Setting up libc6:amd64 (2.35-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8656 files and directories currently installed.) Preparing to unpack .../libc-bin_2.35-2_amd64.deb ... Unpacking libc-bin (2.35-2) over (2.35-1) ... Setting up libc-bin (2.35-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8656 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-5_amd64.deb ... Unpacking libpam0g:amd64 (1.5.2-5) over (1.5.2-2) ... Setting up libpam0g:amd64 (1.5.2-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8656 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-5_amd64.deb ... Unpacking libpam-modules-bin (1.5.2-5) over (1.5.2-2) ... Replacing files in old package libpam-modules:amd64 (1.5.2-2) ... Setting up libpam-modules-bin (1.5.2-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8656 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-5_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.2-5) over (1.5.2-2) ... Setting up libpam-modules:amd64 (1.5.2-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8656 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.2-5_all.deb ... Unpacking libpam-runtime (1.5.2-5) over (1.5.2-2) ... Setting up libpam-runtime (1.5.2-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8656 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.12.3+dfsg1-1_amd64.deb ... Unpacking passwd (1:4.12.3+dfsg1-1) over (1:4.11.1+dfsg1-2) ... Setting up passwd (1:4.12.3+dfsg1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8683 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.3-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.3-2) over (3.4.2-4) ... Setting up libffi8:amd64 (3.4.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8683 files and directories currently installed.) Preparing to unpack .../libunistring2_1.0-2_amd64.deb ... Unpacking libunistring2:amd64 (1.0-2) over (1.0-1) ... Setting up libunistring2:amd64 (1.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8683 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.8-2_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.8-2) over (3.7.7-2) ... Setting up libgnutls30:amd64 (3.7.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8683 files and directories currently installed.) Preparing to unpack .../libsystemd0_251.5-1_amd64.deb ... Unpacking libsystemd0:amd64 (251.5-1) over (251.4-3) ... Setting up libsystemd0:amd64 (251.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8684 files and directories currently installed.) Preparing to unpack .../libudev1_251.5-1_amd64.deb ... Unpacking libudev1:amd64 (251.5-1) over (251.4-3) ... Setting up libudev1:amd64 (251.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8685 files and directories currently installed.) Preparing to unpack .../usr-is-merged_32_all.deb ... W: /etc/unsupported-skip-usrmerge-conversion exists. Unpacking usr-is-merged (32) over (31) ... Setting up usr-is-merged (32) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8685 files and directories currently installed.) Preparing to unpack .../archives/usrmerge_32_all.deb ... Unpacking usrmerge (32) over (31) ... Setting up usrmerge (32) ... W: /etc/unsupported-skip-usrmerge-conversion exists. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8685 files and directories currently installed.) Preparing to unpack .../lumpy-sv-examples_0.3.1+dfsg-7_all.deb ... Unpacking lumpy-sv-examples (0.3.1+dfsg-7) over (0.3.1+dfsg-6) ... Setting up lumpy-sv-examples (0.3.1+dfsg-7) ... Processing triggers for libc-bin (2.35-2) ... Processing triggers for debianutils (5.7-0.3) ... 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', '-yf', 'dist-upgrade'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m27.7s DUMP: f399eb81b3de7276a96d4448de6ddea9 - 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'show', '--no-all-versions', 'lumpy-sv-examples'] 0m27.9s DUMP: Package: lumpy-sv-examples Source: lumpy-sv Version: 0.3.1+dfsg-7 Installed-Size: 53323 Maintainer: Debian Med Packaging Team Architecture: all Enhances: lumpy-sv Description-en: general probabilistic framework for structural variant discovery (data) LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency. . This package contains some example data and scripts to test lumpy-sv. Description-md5: 0d30dd2639cc1bf538f85568ced20ff2 Multi-Arch: foreign Homepage: https://github.com/arq5x/lumpy-sv Section: science Priority: optional Filename: pool/main/l/lumpy-sv/lumpy-sv-examples_0.3.1+dfsg-7_all.deb Size: 54563848 MD5sum: f9cd1a1633a63c0c37ebe243a6dee896 SHA256: 0d82651dd61a1ac1c0616f4d53ba2c7dea79367e9f46e0c8566324cf1efed074 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'show', '--no-all-versions', 'lumpy-sv-examples'] 0m27.9s INFO: apt-cache knows about the following packages: lumpy-sv-examples 0m27.9s INFO: Running scripts pre_install 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_database-server'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_database-server'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_exceptions'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_exceptions'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_extras'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_extras'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy'] 0m28.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy', 'lumpy-sv-examples'] 0m28.0s DUMP: lumpy-sv-examples: Installed: 0.3.1+dfsg-7 Candidate: 0.3.1+dfsg-7 Version table: *** 0.3.1+dfsg-7 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy', 'lumpy-sv-examples'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', '-y', 'install', 'lumpy-sv-examples'] 0m28.4s DUMP: Reading package lists... Building dependency tree... Reading state information... lumpy-sv-examples is already the newest version (0.3.1+dfsg-7). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', '-y', 'install', 'lumpy-sv-examples'] 0m28.4s INFO: Running scripts post_install 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_install_exceptions'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_install_exceptions'] 0m28.5s INFO: Running scripts post_distupgrade 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_distupgrade_exceptions'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_distupgrade_exceptions'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_distupgrade_zz_backports'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_distupgrade_zz_backports'] 0m28.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m28.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m28.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m29.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m29.1s INFO: Running scripts pre_install 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_database-server'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_database-server'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_exceptions'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_exceptions'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_extras'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_extras'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy'] 0m29.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy', 'lumpy-sv-examples'] 0m29.3s DUMP: lumpy-sv-examples: Installed: 0.3.1+dfsg-7 Candidate: 0.3.1+dfsg-7 Version table: *** 0.3.1+dfsg-7 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-cache', 'policy', 'lumpy-sv-examples'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', '-y', 'install', 'lumpy-sv-examples=0.3.1+dfsg-7'] 0m30.0s DUMP: Reading package lists... Building dependency tree... Reading state information... lumpy-sv-examples is already the newest version (0.3.1+dfsg-7). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', '-y', 'install', 'lumpy-sv-examples=0.3.1+dfsg-7'] 0m30.0s INFO: Running scripts post_install 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_install_exceptions'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_install_exceptions'] 0m30.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m30.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m30.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', '-ac', '--ignore-obsolete'] 0m31.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', '-ac', '--ignore-obsolete'] 0m31.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.9s DUMP: 0.15.6 0m31.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.9s INFO: Running adequate version 0.15.6 now. 0m31.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'lumpy-sv-examples'] 0m32.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'lumpy-sv-examples'] 0m32.0s INFO: Running scripts pre_remove 0m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_exceptions'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/pre_remove_exceptions'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m33.4s DUMP: install ok installed adduser adduser 3.129 install ok installed apt apt 2.5.3 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-1 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-5 install ok installed gpgv gpgv 2.2.39-1 install ok installed grep grep 3.8-2 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.3 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.35-2 install ok installed libc6:amd64 libc6 2.35-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.264 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1 install ok installed libffi8:amd64 libffi8 3.4.3-2 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-2 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-5 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-2 install ok installed libgdbm6:amd64 libgdbm6 1.23-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libperl5.34:amd64 libperl5.34 5.34.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b2 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b2 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.6~rc1-1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-5 install ok installed libsystemd0:amd64 libsystemd0 251.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-2 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.5-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.12.3+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1 install ok installed lumpy-sv-examples lumpy-sv-examples 0.3.1+dfsg-7 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.12.3+dfsg1-1 install ok installed perl perl 5.34.0-5 install ok installed perl-base perl-base 5.34.0-5 install ok installed perl-modules-5.34 perl-modules-5.34 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-6 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022d-1 install ok installed usr-is-merged usr-is-merged 32 install ok installed usrmerge usrmerge 32 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', 'remove', 'lumpy-sv-examples'] 0m34.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: lumpy-sv-examples 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 54.6 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8685 files and directories currently installed.) Removing lumpy-sv-examples (0.3.1+dfsg-7) ... 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', 'remove', 'lumpy-sv-examples'] 0m34.1s INFO: Running scripts post_remove 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_remove_exceptions'] 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_remove_exceptions'] 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg', '--purge', 'lumpy-sv-examples'] 0m34.1s DUMP: dpkg: warning: ignoring request to remove lumpy-sv-examples which isn't installed 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg', '--purge', 'lumpy-sv-examples'] 0m34.1s INFO: Running scripts post_purge 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_purge_exceptions'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_purge_exceptions'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg', '--purge', '--pending'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg', '--purge', '--pending'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg', '--remove', '--pending'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg', '--remove', '--pending'] 0m34.2s INFO: Running scripts post_test 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_test_exceptions'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'tmp/scripts/post_test_exceptions'] 0m34.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m34.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg-divert', '--list'] 0m34.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'dpkg-divert', '--list'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', 'clean'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme', 'apt-get', 'clean'] 0m34.6s DEBUG: Recording chroot state 0m35.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/shm'] 0m35.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/shm'] 0m35.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/console'] 0m35.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/console'] 0m35.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/ptmx'] 0m35.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/ptmx'] 0m35.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/pts'] 0m35.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/dev/pts'] 0m35.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/proc'] 0m35.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme/proc'] 0m35.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m35.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0ko5wyme'] 0m35.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp0ko5wyme 0m35.7s INFO: PASS: Upgrading between Debian distributions. 0m35.7s INFO: PASS: All tests. 0m35.7s INFO: piuparts run ends. ret=0 End: 2022-10-07 09:11:37 GMT