Start: 2022-04-12 00:12:57 GMT [testing] Package: mauve-aligner Version: 2.4.0+4736-4 Installed-Size: 543 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbiojava1.7-java, libcommons-cli-java, libdbus-java, libunixsocket-java, libzeus-jscl-java, java-wrappers, libbiojava-java, progressivemauve Description: multiple genome alignment Homepage: https://darlinglab.org/mauve/ Description-md5: 3a6b6e20614d8331f48ecec8afbd02a9 Section: science Priority: optional Filename: pool/main/m/mauve-aligner/mauve-aligner_2.4.0+4736-4_amd64.deb Size: 488964 MD5sum: a5b3645bb66b4fd26cdd8f3e2c057606 SHA256: e1ce071b08aaf90be10fb4597e6dda6bb5251c8411d2951c612196f0ed979d4a [sid] Package: mauve-aligner Version: 2.4.0+4736-6 Installed-Size: 544 Maintainer: Debian Med Packaging Team Architecture: all Depends: libbiojava1.9-java, libcommons-cli-java, libdbus-java, libunixsocket-java, libzeus-jscl-java, java-wrappers, libbiojava-java (>= 1:1.9.5+dfsg-1), progressivemauve Description: multiple genome alignment Homepage: https://darlinglab.org/mauve/ Description-md5: 3a6b6e20614d8331f48ecec8afbd02a9 Section: science Priority: optional Filename: pool/main/m/mauve-aligner/mauve-aligner_2.4.0+4736-6_all.deb Size: 489224 MD5sum: f501782e59dfe8b906a5571b60393c64 SHA256: dc0950efad3a33efbd0d52d6aeda9b854ba0288d4d748306df8c6decac81b2c8 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt mauve-aligner=2.4.0+4736-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt mauve-aligner=2.4.0+4736-6 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-20-amd64 #1 SMP Debian 4.19.235-1 (2022-03-17) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpbiiptxwu 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpbiiptxwu 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpbiiptxwu/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', 'update'] 0m4.4s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [130 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8420 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5733 kB] Fetched 14.3 MB in 2s (7413 kB/s) Reading package lists... 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', 'update'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: perl-base 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1640 kB of archives. After this operation, 28.7 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.34.0-4 [1640 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1640 kB in 0s (35.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6687 files and directories currently installed.) Preparing to unpack .../perl-base_5.34.0-4_amd64.deb ... Unpacking perl-base (5.34.0-4) over (5.34.0-3) ... Setting up perl-base (5.34.0-4) ... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.7s DUMP: 6f31250447e697b7ae58a933ad72ae90 - 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.7s INFO: Running scripts post_setup 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_dummy_users'] 0m6.8s DUMP: useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_dummy_users'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_forbid_home'] 0m6.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_forbid_home'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.9s DUMP: install ok installed adduser adduser 3.121 install ok installed apt apt 2.4.4 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.3-1+b1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.7 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-2 install ok installed gcc-12-base:amd64 gcc-12-base 12-20220319-1 install ok installed gpgv gpgv 2.2.27-3+b1 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.62 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.4.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.3-1+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-7 install ok installed libc6:amd64 libc6 2.33-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12-20220319-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.3-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.19.2-2+b1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.19.2-2+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.19.2-2+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.19.2-2+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.3-1+b1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b2 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b2 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.3-1+b1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-1 install ok installed libstdc++6:amd64 libstdc++6 12-20220319-1 install ok installed libsystemd0:amd64 libsystemd0 250.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.37.3-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.10+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-3+b1 install ok installed mount mount 2.37.3-1+b1 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-4 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022a-1 install ok installed util-linux util-linux 2.37.3-1+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m7.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m7.1s INFO: Running scripts is_testable 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s INFO: Running scripts pre_test 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_test_exceptions'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_test_exceptions'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_test_root_password'] 0m7.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_test_root_password'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'show', '--no-all-versions', 'mauve-aligner'] 0m7.3s DUMP: Package: mauve-aligner Version: 2.4.0+4736-4 Installed-Size: 543 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbiojava1.7-java, libcommons-cli-java, libdbus-java, libunixsocket-java, libzeus-jscl-java, java-wrappers, libbiojava-java, progressivemauve Description-en: multiple genome alignment Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences. . Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours. . Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition. . Mauve is developed at the University of Wisconsin. Description-md5: 3a6b6e20614d8331f48ecec8afbd02a9 Homepage: https://darlinglab.org/mauve/ Section: science Priority: optional Filename: pool/main/m/mauve-aligner/mauve-aligner_2.4.0+4736-4_amd64.deb Size: 488964 MD5sum: a5b3645bb66b4fd26cdd8f3e2c057606 SHA256: e1ce071b08aaf90be10fb4597e6dda6bb5251c8411d2951c612196f0ed979d4a 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'show', '--no-all-versions', 'mauve-aligner'] 0m7.3s INFO: apt-cache knows about the following packages: mauve-aligner 0m7.3s INFO: Running scripts pre_install 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_database-server'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_database-server'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy'] 0m7.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy', 'mauve-aligner'] 0m7.4s DUMP: mauve-aligner: Installed: (none) Candidate: 2.4.0+4736-4 Version table: 2.4.0+4736-4 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy', 'mauve-aligner'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', '-y', 'install', 'mauve-aligner'] 0m25.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common java-wrappers libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.7-java libboost-filesystem1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libbrotli1 libbsd0 libbytecode-java libcommons-cli-java libcommons-collections3-java libcommons-dbcp-java libcommons-pool-java libcups2 libdbus-1-3 libdbus-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libfontconfig1 libfreetype6 libgenome0 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhsqldb-java libicu67 libjpeg62-turbo liblcms2-2 libllvm13 libmatthew-debug-java libmd0 libmems1 libmuscle1 libnspr4 libnss3 libpciaccess0 libpcsclite1 libpng16-16 libsensors-config libsensors5 libservlet-api-java libsqlite3-0 libunixsocket-java libvulkan1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 libzeus-jscl-java openjdk-11-jre openjdk-11-jre-headless openssl progressivemauve sensible-utils ucf unzip x11-common Suggested packages: libasound2-plugins alsa-utils java-virtual-machine libjgrapht-java libbiojava-java-doc libcommons-collections3-java-doc libcommons-dbcp-java-doc libgeronimo-jta-1.2-spec-java cups-common libhsqldb-java-doc liblcms2-utils libmatthew-java-doc pciutils pcscd lm-sensors libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic zip Recommended packages: alsa-ucm-conf alsa-topology-conf dbus libglib2.0-data shared-mime-info xdg-user-dirs mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra The following NEW packages will be installed: ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common java-wrappers libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.7-java libboost-filesystem1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libbrotli1 libbsd0 libbytecode-java libcommons-cli-java libcommons-collections3-java libcommons-dbcp-java libcommons-pool-java libcups2 libdbus-1-3 libdbus-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libfontconfig1 libfreetype6 libgenome0 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhsqldb-java libicu67 libjpeg62-turbo liblcms2-2 libllvm13 libmatthew-debug-java libmd0 libmems1 libmuscle1 libnspr4 libnss3 libpciaccess0 libpcsclite1 libpng16-16 libsensors-config libsensors5 libservlet-api-java libsqlite3-0 libunixsocket-java libvulkan1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 libzeus-jscl-java mauve-aligner openjdk-11-jre openjdk-11-jre-headless openssl progressivemauve sensible-utils ucf unzip x11-common 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 110 MB of archives. After this operation, 436 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 1.1.1n-1 [853 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20211016 [156 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043 [74.0 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.72 [14.5 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-5 [124 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-5 [58.4 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.0-1 [235 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-5 [62.1 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.1op1-2 [349 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.2-1 [164 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.4.8-1 [109 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b3 [276 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.11.1+dfsg-1 [400 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config all 2.13.1-4.4 [281 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.13.1-4.4 [350 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.33-1 [113 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.38.2-1 [829 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.77-1 [1327 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.6.1-2 [38.8 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.6.1-2+b1 [374 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.72.0-1+b1 [1426 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.5-3 [60.1 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 openjdk-11-jre-headless amd64 11.0.14.1+1-1 [37.3 MB] Get:30 http://deb.debian.org/debian bookworm/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20190909 [15.7 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.4.0-1 [51.0 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-1 [29.6 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.6-1 [114 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.7.5-1 [308 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.7.5-1 [774 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.110-1 [15.4 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.110-1 [44.7 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 21.3.7-1 [74.8 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.7.5-1 [203 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-1 [22.4 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:54 http://deb.debian.org/debian bookworm/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.110-1 [29.3 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.16-3 [53.7 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libdrm-intel1 amd64 2.4.110-1 [72.6 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.110-1 [27.5 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.110-1 [30.9 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.186-1 [179 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20210910-1 [97.5 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.13+dfsg-1 [709 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-1+b1 [6997 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libllvm13 amd64 1:13.0.1-3+b2 [20.1 MB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libvulkan1 amd64 1.3.204.1-2 [113 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 21.3.7-1 [10.8 MB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 21.3.7-1 [184 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.4.0-1 [33.7 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libgl1 amd64 1.4.0-1 [90.9 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libgif7 amd64 5.1.9-2 [45.1 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1 [84.0 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 openjdk-11-jre amd64 11.0.14.1+1-1 [175 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 default-jre amd64 2:1.11-72 [1044 B] Get:80 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-26 [171 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 java-wrappers all 0.3 [10.9 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libcommons-pool-java all 1.6-4 [109 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libcommons-collections3-java all 3.2.2-2 [526 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libcommons-dbcp-java all 1.4-7 [157 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libservlet-api-java all 4.0.1-2 [81.0 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libhsqldb-java all 2.6.1-1 [1619 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libbytecode-java all 0.92.svn.20090106-2.1 [88.9 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libbiojava1.7-java all 1:1.7.1-9 [3274 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libbiojava-java all 1:1.7.1-9 [48.7 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-14 [283 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libboost-iostreams1.74.0 amd64 1.74.0-14 [265 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libboost-program-options1.74.0 amd64 1.74.0-14 [357 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libcommons-cli-java all 1.4-2 [57.3 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libmatthew-debug-java all 0.8.1-1.1 [13.9 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libunixsocket-java amd64 0.8.1-1.1 [16.2 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libdbus-java all 2.8-10 [142 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libgenome0 amd64 1.3.11+svn20110227.4616-4 [123 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12-20220319-1 [116 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libmuscle1 amd64 3.7+4565-7 [252 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libmems1 amd64 1.6.0+4725-9+b1 [674 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libzeus-jscl-java all 1.72-2 [129 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 progressivemauve amd64 1.2.0+4713+dfsg-5+b1 [870 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 mauve-aligner amd64 2.4.0+4736-4 [489 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 110 MB in 1s (91.8 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6689 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_1.1.1n-1_amd64.deb ... Unpacking openssl (1.1.1n-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package ucf. Preparing to unpack .../003-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package java-common. Preparing to unpack .../004-java-common_0.72_all.deb ... Unpacking java-common (0.72) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../005-libavahi-common-data_0.8-5_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-5) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../006-libavahi-common3_0.8-5_amd64.deb ... Unpacking libavahi-common3:amd64 (0.8-5) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../007-libdbus-1-3_1.14.0-1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.14.0-1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../008-libavahi-client3_0.8-5_amd64.deb ... 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Setting up libbrotli1:amd64 (1.0.9-2+b3) ... Setting up libsqlite3-0:amd64 (3.38.2-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libsensors-config (1:3.6.0-7) ... Setting up libboost-filesystem1.74.0:amd64 (1.74.0-14) ... Setting up libgomp1:amd64 (12-20220319-1) ... Setting up libunixsocket-java (0.8.1-1.1) ... Setting up libmatthew-debug-java (0.8.1-1.1) ... Setting up libcommons-collections3-java (3.2.2-2) ... Setting up libasound2-data (1.2.6.1-2) ... Setting up libz3-4:amd64 (4.8.12-1+b1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.2-1) ... Setting up libx11-data (2:1.7.5-1) ... Setting up libnspr4:amd64 (2:4.33-1) ... Setting up libavahi-common-data:amd64 (0.8-5) ... Setting up libdbus-1-3:amd64 (1.14.0-1) ... Setting up libzeus-jscl-java (1.72-2) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libcommons-pool-java (1.6-4) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libpcsclite1:amd64 (1.9.5-3) ... Setting up libdbus-java (2.8-10) ... Setting up libsensors5:amd64 (1:3.6.0-7) ... Setting up libglapi-mesa:amd64 (21.3.7-1) ... Setting up libvulkan1:amd64 (1.3.204.1-2) ... Setting up libgif7:amd64 (5.1.9-2) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up sensible-utils (0.0.17) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libasound2:amd64 (1.2.6.1-2+b1) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up openssl (1.1.1n-1) ... Setting up libbsd0:amd64 (0.11.6-1) ... Setting up libdrm-common (2.4.110-1) ... Setting up libelf1:amd64 (0.186-1) ... Setting up libxml2:amd64 (2.9.13+dfsg-1) ... Setting up libcommons-dbcp-java (1.4-7) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libxcb-xfixes0:amd64 (1.14-3) ... Setting up java-wrappers (0.3) ... Setting up libmuscle1 (3.7+4565-7) ... Setting up libhsqldb-java (2.6.1-1) ... Setting up libxcb-glx0:amd64 (1.14-3) ... Setting up libedit2:amd64 (3.1-20210910-1) ... Setting up libavahi-common3:amd64 (0.8-5) ... Setting up libnss3:amd64 (2:3.77-1) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libmems1:amd64 (1.6.0+4725-9+b1) ... Setting up libxcb-present0:amd64 (1.14-3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up progressivemauve (1.2.0+4713+dfsg-5+b1) ... Setting up libfreetype6:amd64 (2.11.1+dfsg-1) ... Setting up libxcb-sync1:amd64 (1.14-3) ... Setting up libllvm13:amd64 (1:13.0.1-3+b2) ... Setting up ucf (3.0043) ... Setting up libxcb-dri2-0:amd64 (1.14-3) ... Setting up libdrm2:amd64 (2.4.110-1) ... Setting up libx11-6:amd64 (2:1.7.5-1) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libavahi-client3:amd64 (0.8-5) ... Setting up libdrm-amdgpu1:amd64 (2.4.110-1) ... Setting up libxcb-dri3-0:amd64 (1.14-3) ... Setting up libx11-xcb1:amd64 (2:1.7.5-1) ... Setting up libdrm-nouveau2:amd64 (2.4.110-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libdrm-radeon1:amd64 (2.4.110-1) ... Setting up fontconfig-config (2.13.1-4.4) ... Setting up libdrm-intel1:amd64 (2.4.110-1) ... Setting up libgl1-mesa-dri:amd64 (21.3.7-1) ... Setting up libxext6:amd64 (2:1.3.4-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxfixes3:amd64 (1:6.0.0-1) ... Setting up libcups2:amd64 (2.4.1op1-2) ... Setting up libfontconfig1:amd64 (2.13.1-4.4) ... Setting up libglx-mesa0:amd64 (21.3.7-1) ... Setting up libxi6:amd64 (2:1.8-1) ... Setting up libglx0:amd64 (1.4.0-1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libgl1:amd64 (1.4.0-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:amd64 (11.0.14.1+1-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.14.1+1-1) ... Setting up default-jre (2:1.11-72) ... Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up libbytecode-java (0.92.svn.20090106-2.1) ... Setting up libbiojava1.7-java (1:1.7.1-9) ... Setting up libbiojava-java (1:1.7.1-9) ... Setting up mauve-aligner (2.4.0+4736-4) ... Processing triggers for libc-bin (2.33-7) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', '-y', 'install', 'mauve-aligner'] 0m25.5s INFO: Running scripts post_install 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_install_exceptions'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_install_exceptions'] 0m25.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m25.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m25.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpbiiptxwu to sid 0m25.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m25.7s INFO: Running scripts pre_distupgrade 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', 'update'] 0m29.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9138 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6778 kB] Fetched 16.1 MB in 3s (6332 kB/s) Reading package lists... 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', 'update'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', '-yf', 'dist-upgrade'] 0m33.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libbytecode-java libcommons-collections3-java libcups2 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libfontconfig1 libfreetype6 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libharfbuzz0b libhsqldb-java libicu67 libjpeg62-turbo liblcms2-2 libllvm13 libmd0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libpng16-16 libsensors-config libsensors5 libservlet-api-java libsqlite3-0 libvulkan1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 openjdk-11-jre openjdk-11-jre-headless ucf x11-common Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libbiojava1.7-java The following NEW packages will be installed: libatinject-jsr330-api-java libbiojava1.9-java libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java The following packages will be upgraded: apt gzip libapt-pkg6.0 libbiojava-java libcap-ng0 libgcrypt20 libgl1-mesa-dri libglapi-mesa libglx-mesa0 liblzma5 libpcre2-8-0 libpcre3 libzstd1 mauve-aligner 14 upgraded, 6 newly installed, 1 to remove and 0 not upgraded. Need to get 22.0 MB of archives. After this operation, 3242 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1 [140 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.1-2 [704 kB] Get:3 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.2.5-2.1 [168 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [275 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.4.5 [1029 kB] Get:6 http://deb.debian.org/debian sid/main amd64 apt amd64 2.4.5 [1496 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:8 http://deb.debian.org/debian sid/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libguava-java all 29.0-6 [2419 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libjgraph-java all 5.12.4.2+dfsg-5.1 [205 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libjgrapht0.8-java all 0.8.3-5 [214 kB] Get:12 http://deb.debian.org/debian sid/main amd64 mauve-aligner all 2.4.0+4736-6 [489 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libbiojava-java all 1:1.9.5+dfsg-2 [7148 B] Get:14 http://deb.debian.org/debian sid/main amd64 libbiojava1.9-java all 1:1.9.5+dfsg-2 [3117 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.7.9-2.2+b2 [14.7 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.39-4 [252 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-14 [345 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libglx-mesa0 amd64 21.3.8-1 [184 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libgl1-mesa-dri amd64 21.3.8-1 [10.8 MB] Get:20 http://deb.debian.org/debian sid/main amd64 libglapi-mesa amd64 21.3.8-1 [74.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.0 MB in 0s (53.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8861 files and directories currently installed.) Preparing to unpack .../archives/gzip_1.12-1_amd64.deb ... Unpacking gzip (1.12-1) over (1.10-4) ... Setting up gzip (1.12-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8861 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.4.5_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.4.5) over (2.4.4) ... Setting up libapt-pkg6.0:amd64 (2.4.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8861 files and directories currently installed.) Preparing to unpack .../archives/apt_2.4.5_amd64.deb ... Unpacking apt (2.4.5) over (2.4.4) ... Setting up apt (2.4.5) ... Removing obsolete conffile /etc/kernel/postinst.d/apt-auto-removal ... Selecting previously unselected package libatinject-jsr330-api-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8860 files and directories currently installed.) Preparing to unpack .../0-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../1-libjsr305-java_0.1~+svn49-11_all.deb ... Unpacking libjsr305-java (0.1~+svn49-11) ... Selecting previously unselected package libguava-java. Preparing to unpack .../2-libguava-java_29.0-6_all.deb ... Unpacking libguava-java (29.0-6) ... Selecting previously unselected package libjgraph-java. Preparing to unpack .../3-libjgraph-java_5.12.4.2+dfsg-5.1_all.deb ... Unpacking libjgraph-java (5.12.4.2+dfsg-5.1) ... Selecting previously unselected package libjgrapht0.8-java. Preparing to unpack .../4-libjgrapht0.8-java_0.8.3-5_all.deb ... Unpacking libjgrapht0.8-java (0.8.3-5) ... Preparing to unpack .../5-mauve-aligner_2.4.0+4736-6_all.deb ... Unpacking mauve-aligner (2.4.0+4736-6) over (2.4.0+4736-4) ... dpkg: libbiojava1.7-java: dependency problems, but removing anyway as you requested: libbiojava-java depends on libbiojava1.7-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8956 files and directories currently installed.) Removing libbiojava1.7-java (1:1.7.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8950 files and directories currently installed.) Preparing to unpack .../libbiojava-java_1%3a1.9.5+dfsg-2_all.deb ... Unpacking libbiojava-java (1:1.9.5+dfsg-2) over (1:1.7.1-9) ... Selecting previously unselected package libbiojava1.9-java. Preparing to unpack .../libbiojava1.9-java_1%3a1.9.5+dfsg-2_all.deb ... Unpacking libbiojava1.9-java (1:1.9.5+dfsg-2) ... Preparing to unpack .../libcap-ng0_0.7.9-2.2+b2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.9-2.2+b2) over (0.7.9-2.2+b1) ... Setting up libcap-ng0:amd64 (0.7.9-2.2+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8975 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.39-4_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.39-4) over (10.39-3) ... Setting up libpcre2-8-0:amd64 (10.39-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8975 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-14_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-14) over (2:8.39-13) ... Setting up libpcre3:amd64 (2:8.39-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8975 files and directories currently installed.) Preparing to unpack .../libglx-mesa0_21.3.8-1_amd64.deb ... Unpacking libglx-mesa0:amd64 (21.3.8-1) over (21.3.7-1) ... Preparing to unpack .../libgl1-mesa-dri_21.3.8-1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (21.3.8-1) over (21.3.7-1) ... Preparing to unpack .../libglapi-mesa_21.3.8-1_amd64.deb ... Unpacking libglapi-mesa:amd64 (21.3.8-1) over (21.3.7-1) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libjgraph-java (5.12.4.2+dfsg-5.1) ... Setting up libglapi-mesa:amd64 (21.3.8-1) ... Setting up libjgrapht0.8-java (0.8.3-5) ... Setting up libgl1-mesa-dri:amd64 (21.3.8-1) ... Setting up libguava-java (29.0-6) ... Setting up libbiojava1.9-java (1:1.9.5+dfsg-2) ... Setting up libbiojava-java (1:1.9.5+dfsg-2) ... Setting up libglx-mesa0:amd64 (21.3.8-1) ... Setting up mauve-aligner (2.4.0+4736-6) ... Processing triggers for libc-bin (2.33-7) ... 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', '-yf', 'dist-upgrade'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m33.9s DUMP: 6dbbeee056b67584590d804ac89feca2 - 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'show', '--no-all-versions', 'mauve-aligner'] 0m34.1s DUMP: Package: mauve-aligner Version: 2.4.0+4736-6 Installed-Size: 544 Maintainer: Debian Med Packaging Team Architecture: all Depends: libbiojava1.9-java, libcommons-cli-java, libdbus-java, libunixsocket-java, libzeus-jscl-java, java-wrappers, libbiojava-java (>= 1:1.9.5+dfsg-1), progressivemauve Description-en: multiple genome alignment Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences. . Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours. . Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition. . Mauve is developed at the University of Wisconsin. Description-md5: 3a6b6e20614d8331f48ecec8afbd02a9 Homepage: https://darlinglab.org/mauve/ Section: science Priority: optional Filename: pool/main/m/mauve-aligner/mauve-aligner_2.4.0+4736-6_all.deb Size: 489224 MD5sum: f501782e59dfe8b906a5571b60393c64 SHA256: dc0950efad3a33efbd0d52d6aeda9b854ba0288d4d748306df8c6decac81b2c8 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'show', '--no-all-versions', 'mauve-aligner'] 0m34.1s INFO: apt-cache knows about the following packages: mauve-aligner 0m34.1s INFO: Running scripts pre_install 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_database-server'] 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_database-server'] 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_exceptions'] 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_exceptions'] 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_extras'] 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_extras'] 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture'] 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture'] 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy'] 0m34.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy', 'mauve-aligner'] 0m34.2s DUMP: mauve-aligner: Installed: 2.4.0+4736-6 Candidate: 2.4.0+4736-6 Version table: *** 2.4.0+4736-6 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy', 'mauve-aligner'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', '-y', 'install', 'mauve-aligner'] 0m34.5s DUMP: Reading package lists... Building dependency tree... Reading state information... mauve-aligner is already the newest version (2.4.0+4736-6). The following packages were automatically installed and are no longer required: ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libbytecode-java libcommons-collections3-java libcups2 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libfontconfig1 libfreetype6 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libharfbuzz0b libhsqldb-java libicu67 libjpeg62-turbo liblcms2-2 libllvm13 libmd0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libpng16-16 libsensors-config libsensors5 libservlet-api-java libsqlite3-0 libvulkan1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 openjdk-11-jre openjdk-11-jre-headless ucf x11-common Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', '-y', 'install', 'mauve-aligner'] 0m34.5s INFO: Running scripts post_install 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_install_exceptions'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_install_exceptions'] 0m34.6s INFO: Running scripts post_distupgrade 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_distupgrade_exceptions'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_distupgrade_exceptions'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_distupgrade_zz_backports'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_distupgrade_zz_backports'] 0m34.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m34.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m34.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m35.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m35.3s INFO: Running scripts pre_install 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_database-server'] 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_database-server'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_exceptions'] 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_exceptions'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_extras'] 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_extras'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy'] 0m35.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy', 'mauve-aligner'] 0m35.4s DUMP: mauve-aligner: Installed: 2.4.0+4736-6 Candidate: 2.4.0+4736-6 Version table: *** 2.4.0+4736-6 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-cache', 'policy', 'mauve-aligner'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', '-y', 'install', 'mauve-aligner=2.4.0+4736-6'] 0m35.9s DUMP: Reading package lists... Building dependency tree... Reading state information... mauve-aligner is already the newest version (2.4.0+4736-6). The following packages were automatically installed and are no longer required: ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libbytecode-java libcommons-collections3-java libcups2 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libfontconfig1 libfreetype6 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libharfbuzz0b libhsqldb-java libicu67 libjpeg62-turbo liblcms2-2 libllvm13 libmd0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libpng16-16 libsensors-config libsensors5 libservlet-api-java libsqlite3-0 libvulkan1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 openjdk-11-jre openjdk-11-jre-headless ucf x11-common Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m35.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', '-y', 'install', 'mauve-aligner=2.4.0+4736-6'] 0m35.9s INFO: Running scripts post_install 0m35.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_install_exceptions'] 0m35.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_install_exceptions'] 0m35.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m36.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m36.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', '-ac', '--ignore-obsolete'] 0m39.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', '-ac', '--ignore-obsolete'] 0m39.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m39.5s DUMP: 0.15.2 0m39.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m39.5s INFO: Running adequate version 0.15.2 now. 0m39.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'mauve-aligner'] 0m39.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'mauve-aligner'] 0m39.6s INFO: Running scripts pre_remove 0m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_exceptions'] 0m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/pre_remove_exceptions'] 0m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m41.6s DUMP: install ok installed adduser adduser 3.121 install ok installed apt apt 2.4.5 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.3-1+b1 install ok installed ca-certificates ca-certificates 20211016 install ok installed ca-certificates-java ca-certificates-java 20190909 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.1 install ok installed default-jre default-jre 2:1.11-72 install ok installed default-jre-headless default-jre-headless 2:1.11-72 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.7 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-2 install ok installed fontconfig-config fontconfig-config 2.13.1-4.4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed gcc-12-base:amd64 gcc-12-base 12-20220319-1 install ok installed gpgv gpgv 2.2.27-3+b1 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.62 install ok installed java-common java-common 0.72 install ok installed java-wrappers java-wrappers 0.3 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.4.5 install ok installed libasound2:amd64 libasound2 1.2.6.1-2+b1 install ok installed libasound2-data libasound2-data 1.2.6.1-2 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-5 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-5 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-5 install ok installed libbiojava-java libbiojava-java 1:1.9.5+dfsg-2 install ok installed libbiojava1.9-java libbiojava1.9-java 1:1.9.5+dfsg-2 install ok installed libblkid1:amd64 libblkid1 2.37.3-1+b1 install ok installed libboost-filesystem1.74.0:amd64 libboost-filesystem1.74.0 1.74.0-14 install ok installed libboost-iostreams1.74.0:amd64 libboost-iostreams1.74.0 1.74.0-14 install ok installed libboost-program-options1.74.0:amd64 libboost-program-options1.74.0 1.74.0-14 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b3 install ok installed libbsd0:amd64 libbsd0 0.11.6-1 install ok installed libbytecode-java libbytecode-java 0.92.svn.20090106-2.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-7 install ok installed libc6:amd64 libc6 2.33-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcommons-cli-java libcommons-cli-java 1.4-2 install ok installed libcommons-collections3-java libcommons-collections3-java 3.2.2-2 install ok installed libcommons-dbcp-java libcommons-dbcp-java 1.4-7 install ok installed libcommons-pool-java libcommons-pool-java 1.6-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libcups2:amd64 libcups2 2.4.1op1-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.0-1 install ok installed libdbus-java libdbus-java 2.8-10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.110-1 install ok installed libdrm-common libdrm-common 2.4.110-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.110-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.110-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.110-1 install ok installed libdrm2:amd64 libdrm2 2.4.110-1 install ok installed libedit2:amd64 libedit2 3.1-20210910-1 install ok installed libelf1:amd64 libelf1 0.186-1 install ok installed libexpat1:amd64 libexpat1 2.4.8-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.4 install ok installed libfreetype6:amd64 libfreetype6 2.11.1+dfsg-1 install ok installed libgcc-s1:amd64 libgcc-s1 12-20220319-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgenome0:amd64 libgenome0 1.3.11+svn20110227.4616-4 install ok installed libgif7:amd64 libgif7 5.1.9-2 install ok installed libgl1:amd64 libgl1 1.4.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 21.3.8-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 21.3.8-1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.72.0-1+b1 install ok installed libglvnd0:amd64 libglvnd0 1.4.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 21.3.8-1 install ok installed libglx0:amd64 libglx0 1.4.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.3-4+b1 install ok installed libgomp1:amd64 libgomp1 12-20220319-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.19.2-2+b1 install ok installed libguava-java libguava-java 29.0-6 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhsqldb-java libhsqldb-java 2.6.1-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libjgraph-java libjgraph-java 5.12.4.2+dfsg-5.1 install ok installed libjgrapht0.8-java libjgrapht0.8-java 0.8.3-5 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.2-1 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed libk5crypto3:amd64 libk5crypto3 1.19.2-2+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.19.2-2+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.19.2-2+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.12~rc1-2 install ok installed libllvm13:amd64 libllvm13 1:13.0.1-3+b2 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmatthew-debug-java libmatthew-debug-java 0.8.1-1.1 install ok installed libmd0:amd64 libmd0 1.0.4-1 install ok installed libmems1:amd64 libmems1 1.6.0+4725-9+b1 install ok installed libmount1:amd64 libmount1 2.37.3-1+b1 install ok installed libmuscle1 libmuscle1 3.7+4565-7 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.33-1 install ok installed libnss3:amd64 libnss3 2:3.77-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-4 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libpcsclite1:amd64 libpcsclite1 1.9.5-3 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b2 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b2 install ok installed libsensors-config libsensors-config 1:3.6.0-7 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-7 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libservlet-api-java libservlet-api-java 4.0.1-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.3-1+b1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.38.2-1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-1 install ok installed libstdc++6:amd64 libstdc++6 12-20220319-1 install ok installed libsystemd0:amd64 libsystemd0 250.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libunixsocket-java libunixsocket-java 0.8.1-1.1 install ok installed libuuid1:amd64 libuuid1 2.37.3-1+b1 install ok installed libvulkan1:amd64 libvulkan1 1.3.204.1-2 install ok installed libx11-6:amd64 libx11-6 2:1.7.5-1 install ok installed libx11-data libx11-data 2:1.7.5-1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.7.5-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.14-3 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.14-3 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.14-3 install ok installed libxcb-present0:amd64 libxcb-present0 1.14-3 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.14-3 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.14-3 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.14-3 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-1 install ok installed libxi6:amd64 libxi6 2:1.8-1 install ok installed libxml2:amd64 libxml2 2.9.13+dfsg-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libz3-4:amd64 libz3-4 4.8.12-1+b1 install ok installed libzeus-jscl-java libzeus-jscl-java 1.72-2 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mauve-aligner mauve-aligner 2.4.0+4736-6 install ok installed mawk mawk 1.3.4.20200120-3+b1 install ok installed mount mount 2.37.3-1+b1 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed openjdk-11-jre:amd64 openjdk-11-jre 11.0.14.1+1-1 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.14.1+1-1 install ok installed openssl openssl 1.1.1n-1 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-4 install ok installed progressivemauve progressivemauve 1.2.0+4713+dfsg-5+b1 install ok installed sed sed 4.8-1 install ok installed sensible-utils sensible-utils 0.0.17 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022a-1 install ok installed ucf ucf 3.0043 install ok installed unzip unzip 6.0-26 install ok installed util-linux util-linux 2.37.3-1+b1 install ok installed x11-common x11-common 1:7.7+23 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4 0m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', 'remove', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'java-wrappers', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava-java', 'libbiojava1.9-java', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbytecode-java', 'libcommons-cli-java', 'libcommons-collections3-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdbus-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgenome0:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libhsqldb-java', 'libicu67:amd64', 'libjgraph-java', 'libjgrapht0.8-java', 'libjpeg62-turbo:amd64', 'libjsr305-java', 'liblcms2-2:amd64', 'libllvm13:amd64', 'libmatthew-debug-java', 'libmd0:amd64', 'libmems1:amd64', 'libmuscle1', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsensors-config', 'libsensors5:amd64', 'libservlet-api-java', 'libsqlite3-0:amd64', 'libunixsocket-java', 'libvulkan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'libzeus-jscl-java', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'progressivemauve', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'mauve-aligner'] 0m43.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common java-wrappers libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.9-java libboost-filesystem1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libbrotli1 libbsd0 libbytecode-java libcommons-cli-java libcommons-collections3-java libcommons-dbcp-java libcommons-pool-java libcups2 libdbus-1-3 libdbus-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libfontconfig1 libfreetype6 libgenome0 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libguava-java libharfbuzz0b libhsqldb-java libicu67 libjgraph-java libjgrapht0.8-java libjpeg62-turbo libjsr305-java liblcms2-2 libllvm13 libmatthew-debug-java libmd0 libmems1 libmuscle1 libnspr4 libnss3 libpciaccess0 libpcsclite1 libpng16-16 libsensors-config libsensors5 libservlet-api-java libsqlite3-0 libunixsocket-java libvulkan1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 libzeus-jscl-java mauve-aligner openjdk-11-jre openjdk-11-jre-headless openssl progressivemauve sensible-utils ucf unzip x11-common 0 upgraded, 0 newly installed, 108 to remove and 0 not upgraded. After this operation, 440 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8975 files and directories currently installed.) Removing libbytecode-java (0.92.svn.20090106-2.1) ... Removing default-jre (2:1.11-72) ... Removing openjdk-11-jre:amd64 (11.0.14.1+1-1) ... Removing default-jre-headless (2:1.11-72) ... Removing mauve-aligner (2.4.0+4736-6) ... Removing java-wrappers (0.3) ... Removing libbiojava-java (1:1.9.5+dfsg-2) ... Removing libbiojava1.9-java (1:1.9.5+dfsg-2) ... Removing libguava-java (29.0-6) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Removing progressivemauve (1.2.0+4713+dfsg-5+b1) ... Removing libmems1:amd64 (1.6.0+4725-9+b1) ... Removing libboost-filesystem1.74.0:amd64 (1.74.0-14) ... Removing libboost-iostreams1.74.0:amd64 (1.74.0-14) ... Removing libboost-program-options1.74.0:amd64 (1.74.0-14) ... Removing libgl1:amd64 (1.4.0-1) ... Removing libglx0:amd64 (1.4.0-1) ... Removing libglx-mesa0:amd64 (21.3.8-1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libgl1-mesa-dri:amd64 (21.3.8-1) ... Removing libllvm13:amd64 (1:13.0.1-3+b2) ... Removing libedit2:amd64 (3.1-20210910-1) ... Removing libcommons-cli-java (1.4-2) ... Removing libcommons-collections3-java (3.2.2-2) ... Removing libcommons-dbcp-java (1.4-7) ... Removing libcommons-pool-java (1.6-4) ... Removing libdbus-java (2.8-10) ... Removing libdrm-amdgpu1:amd64 (2.4.110-1) ... Removing libdrm-radeon1:amd64 (2.4.110-1) ... Removing libdrm-nouveau2:amd64 (2.4.110-1) ... Removing libdrm-intel1:amd64 (2.4.110-1) ... Removing libelf1:amd64 (0.186-1) ... Removing libgenome0:amd64 (1.3.11+svn20110227.4616-4) ... Removing libgif7:amd64 (5.1.9-2) ... Removing libglapi-mesa:amd64 (21.3.8-1) ... Removing libglvnd0:amd64 (1.4.0-1) ... Removing libmuscle1 (3.7+4565-7) ... Removing libgomp1:amd64 (12-20220319-1) ... Removing libhsqldb-java (2.6.1-1) ... Removing libxml2:amd64 (2.9.13+dfsg-1) ... Removing libicu67:amd64 (67.1-7) ... Removing libjgrapht0.8-java (0.8.3-5) ... Removing libjgraph-java (5.12.4.2+dfsg-5.1) ... Removing libjsr305-java (0.1~+svn49-11) ... Removing libmatthew-debug-java (0.8.1-1.1) ... Removing libpciaccess0:amd64 (0.16-3) ... Removing libsensors5:amd64 (1:3.6.0-7) ... Removing libsensors-config (1:3.6.0-7) ... Removing libservlet-api-java (4.0.1-2) ... Removing libunixsocket-java (0.8.1-1.1) ... Removing libvulkan1:amd64 (1.3.204.1-2) ... Removing libx11-xcb1:amd64 (2:1.7.5-1) ... Removing libxcb-dri2-0:amd64 (1.14-3) ... Removing libxcb-dri3-0:amd64 (1.14-3) ... Removing libxcb-glx0:amd64 (1.14-3) ... Removing libxcb-present0:amd64 (1.14-3) ... Removing libxcb-shm0:amd64 (1.14-3) ... Removing libxcb-sync1:amd64 (1.14-3) ... Removing libxcb-xfixes0:amd64 (1.14-3) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxi6:amd64 (2:1.8-1) ... Removing libxext6:amd64 (2:1.3.4-1) ... Removing libxfixes3:amd64 (1:6.0.0-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libz3-4:amd64 (4.8.12-1+b1) ... Removing libzeus-jscl-java (1.72-2) ... Removing unzip (6.0-26) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libx11-6:amd64 (2:1.7.5-1) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.6-1) ... Removing libdrm2:amd64 (2.4.110-1) ... Removing libdrm-common (2.4.110-1) ... Removing libmd0:amd64 (1.0.4-1) ... Removing libx11-data (2:1.7.5-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing openjdk-11-jre-headless:amd64 (11.0.14.1+1-1) ... Removing libfontconfig1:amd64 (2.13.1-4.4) ... Removing fontconfig-config (2.13.1-4.4) ... Removing fonts-dejavu-core (2.37-2) ... Removing java-common (0.72) ... Removing libasound2:amd64 (1.2.6.1-2+b1) ... Removing libasound2-data (1.2.6.1-2) ... Removing libcups2:amd64 (2.4.1op1-2) ... Removing libavahi-client3:amd64 (0.8-5) ... Removing libavahi-common3:amd64 (0.8-5) ... Removing libavahi-common-data:amd64 (0.8-5) ... Removing libharfbuzz0b:amd64 (2.7.4-1) ... Removing libfreetype6:amd64 (2.11.1+dfsg-1) ... Removing libbrotli1:amd64 (1.0.9-2+b3) ... Removing libdbus-1-3:amd64 (1.14.0-1) ... Removing libexpat1:amd64 (2.4.8-1) ... Removing libglib2.0-0:amd64 (2.72.0-1+b1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.2-1) ... Removing liblcms2-2:amd64 (2.12~rc1-2) ... Removing libpcsclite1:amd64 (1.9.5-3) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.17) ... Removing ca-certificates-java (20190909) ... Removing ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libnss3:amd64 (2:3.77-1) ... Removing libnspr4:amd64 (2:4.33-1) ... Removing libsqlite3-0:amd64 (3.38.2-1) ... Removing openssl (1.1.1n-1) ... Processing triggers for libc-bin (2.33-7) ... 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', 'remove', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'java-wrappers', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava-java', 'libbiojava1.9-java', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbytecode-java', 'libcommons-cli-java', 'libcommons-collections3-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdbus-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgenome0:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libhsqldb-java', 'libicu67:amd64', 'libjgraph-java', 'libjgrapht0.8-java', 'libjpeg62-turbo:amd64', 'libjsr305-java', 'liblcms2-2:amd64', 'libllvm13:amd64', 'libmatthew-debug-java', 'libmd0:amd64', 'libmems1:amd64', 'libmuscle1', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsensors-config', 'libsensors5:amd64', 'libservlet-api-java', 'libsqlite3-0:amd64', 'libunixsocket-java', 'libvulkan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'libzeus-jscl-java', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'progressivemauve', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'mauve-aligner'] 0m43.0s INFO: Running scripts post_remove 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_remove_exceptions'] 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_remove_exceptions'] 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg', '--purge', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'java-wrappers', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava-java', 'libbiojava1.9-java', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbytecode-java', 'libcommons-cli-java', 'libcommons-collections3-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdbus-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgenome0:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libhsqldb-java', 'libicu67:amd64', 'libjgraph-java', 'libjgrapht0.8-java', 'libjpeg62-turbo:amd64', 'libjsr305-java', 'liblcms2-2:amd64', 'libllvm13:amd64', 'libmatthew-debug-java', 'libmd0:amd64', 'libmems1:amd64', 'libmuscle1', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsensors-config', 'libsensors5:amd64', 'libservlet-api-java', 'libsqlite3-0:amd64', 'libunixsocket-java', 'libvulkan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'libzeus-jscl-java', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'progressivemauve', 'sensible-utils', 'ucf', 'unzip', 'x11-common'] 0m43.3s DUMP: (Reading database ... 6767 files and directories currently installed.) Purging configuration files for ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20190909) ... dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for fontconfig-config (2.13.1-4.4) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... Purging configuration files for java-common (0.72) ... dpkg: warning: ignoring request to remove java-wrappers which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbiojava-java which isn't installed dpkg: warning: ignoring request to remove libbiojava1.9-java which isn't installed dpkg: warning: ignoring request to remove libboost-filesystem1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-iostreams1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-program-options1.74.0 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libbytecode-java which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-collections3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-dbcp-java which isn't installed dpkg: warning: ignoring request to remove libcommons-pool-java which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdbus-java which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgenome0 which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (21.3.8-1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.72.0-1+b1) ... dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhsqldb-java which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libjgraph-java which isn't installed dpkg: warning: ignoring request to remove libjgrapht0.8-java which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libllvm13 which isn't installed dpkg: warning: ignoring request to remove libmatthew-debug-java which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmems1 which isn't installed dpkg: warning: ignoring request to remove libmuscle1 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed Purging configuration files for libsensors-config (1:3.6.0-7) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libservlet-api-java which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libunixsocket-java which isn't installed dpkg: warning: ignoring request to remove libvulkan1 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove libzeus-jscl-java which isn't installed dpkg: warning: ignoring request to remove openjdk-11-jre which isn't installed Purging configuration files for openjdk-11-jre-headless:amd64 (11.0.14.1+1-1) ... Purging configuration files for openssl (1.1.1n-1) ... dpkg: warning: ignoring request to remove progressivemauve which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for unzip (6.0-26) ... Purging configuration files for x11-common (1:7.7+23) ... 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg', '--purge', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'java-wrappers', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava-java', 'libbiojava1.9-java', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbytecode-java', 'libcommons-cli-java', 'libcommons-collections3-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdbus-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgenome0:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libhsqldb-java', 'libicu67:amd64', 'libjgraph-java', 'libjgrapht0.8-java', 'libjpeg62-turbo:amd64', 'libjsr305-java', 'liblcms2-2:amd64', 'libllvm13:amd64', 'libmatthew-debug-java', 'libmd0:amd64', 'libmems1:amd64', 'libmuscle1', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsensors-config', 'libsensors5:amd64', 'libservlet-api-java', 'libsqlite3-0:amd64', 'libunixsocket-java', 'libvulkan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'libzeus-jscl-java', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'progressivemauve', 'sensible-utils', 'ucf', 'unzip', 'x11-common'] 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg', '--purge', 'mauve-aligner'] 0m43.3s DUMP: dpkg: warning: ignoring request to remove mauve-aligner which isn't installed 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg', '--purge', 'mauve-aligner'] 0m43.3s INFO: Running scripts post_purge 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_purge_exceptions'] 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_purge_exceptions'] 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg', '--purge', '--pending'] 0m43.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg', '--purge', '--pending'] 0m43.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg', '--remove', '--pending'] 0m43.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg', '--remove', '--pending'] 0m43.4s INFO: Running scripts post_test 0m43.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_test_exceptions'] 0m43.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'tmp/scripts/post_test_exceptions'] 0m43.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m43.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg-divert', '--list'] 0m43.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'dpkg-divert', '--list'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', 'clean'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu', 'apt-get', 'clean'] 0m43.6s DEBUG: Recording chroot state 0m44.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/shm'] 0m44.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/shm'] 0m44.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/console'] 0m44.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/console'] 0m44.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/ptmx'] 0m44.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/ptmx'] 0m44.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/pts'] 0m44.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/dev/pts'] 0m44.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/proc'] 0m44.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu/proc'] 0m44.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m44.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbiiptxwu'] 0m44.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpbiiptxwu 0m44.4s INFO: PASS: Upgrading between Debian distributions. 0m44.4s INFO: PASS: All tests. 0m44.4s INFO: piuparts run ends. ret=0 End: 2022-04-12 00:13:42 GMT