Start: 2023-05-25 22:30:36 GMT [testing] Package: med-cloud Source: debian-med Version: 3.8.1 Installed-Size: 30 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, bioperl, bioperl-run, biosquid, bowtie, bowtie2, boxshade, bwa, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, glam2, gmap, grinder, gromacs, hhsuite, hisat2, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, muscle3, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, plink1.9, plink2, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, python3-biomaj3-cli, python3-biopython, python3-cogent3, qiime, r-bioc-edger, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise Suggests: anfo, bagpipe, blast2, cufflinks, embassy-phylip, giira Description: Debian Med bioinformatics applications usable in cloud computing Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: metapackages Priority: optional Filename: pool/main/d/debian-med/med-cloud_3.8.1_all.deb Size: 9840 MD5sum: cd5b1d3ef2659a4481274dc65928bfe2 SHA256: cbe22fd5cef1e60ee3bcd916e66c28f812a76e62ff459d8dfc2b897e4068e419 [sid] Package: med-cloud Source: debian-med Version: 3.8.1 Installed-Size: 30 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, bioperl, bioperl-run, biosquid, bowtie, bowtie2, boxshade, bwa, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, glam2, gmap, grinder, gromacs, hhsuite, hisat2, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, muscle3, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, plink1.9, plink2, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, python3-biomaj3-cli, python3-biopython, python3-cogent3, qiime, r-bioc-edger, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise Suggests: anfo, bagpipe, blast2, cufflinks, embassy-phylip, giira Description: Debian Med bioinformatics applications usable in cloud computing Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: metapackages Priority: optional Filename: pool/main/d/debian-med/med-cloud_3.8.1_all.deb Size: 9840 MD5sum: cd5b1d3ef2659a4481274dc65928bfe2 SHA256: cbe22fd5cef1e60ee3bcd916e66c28f812a76e62ff459d8dfc2b897e4068e419 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt med-cloud=3.8.1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt med-cloud=3.8.1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpvvpqlpjq 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpvvpqlpjq 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/proc'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/proc'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/pts'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/pts'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpvvpqlpjq/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', 'update'] 0m3.9s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [189 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8912 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6079 kB] Fetched 15.2 MB in 1s (10.6 MB/s) Reading package lists... 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', 'update'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: dpkg libcap2 libdebconfclient0 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1604 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 dpkg amd64 1.21.22 [1567 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libcap2 amd64 1:2.66-4 [27.0 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libdebconfclient0 amd64 0.270 [9900 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 1604 kB in 0s (32.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8064 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.22_amd64.deb ... Unpacking dpkg (1.21.22) over (1.21.21) ... Setting up dpkg (1.21.22) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8064 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-4_amd64.deb ... Unpacking libcap2:amd64 (1:2.66-4) over (1:2.66-3) ... Setting up libcap2:amd64 (1:2.66-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8064 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.270_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.270) over (0.269) ... Setting up libdebconfclient0:amd64 (0.270) ... Processing triggers for libc-bin (2.36-9) ... 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s DUMP: b94116a731f9f8187e059b26434a6277 - 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s INFO: Running scripts post_setup 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_dummy_users'] 0m5.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_dummy_users'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_forbid_home'] 0m5.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_forbid_home'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_minimize'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_minimize'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_zz_backports'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_setup_zz_backports'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.9s DUMP: install ok installed apt apt 2.6.0 install ok installed base-files base-files 12.4 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.0 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9 install ok installed libc6:amd64 libc6 2.36-9 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6 install ok installed libpam-runtime libpam-runtime 1.5.2-6 install ok installed libpam0g:amd64 libpam0g 1.5.2-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b5 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.6-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.6-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl perl 5.36.0-7 install ok installed perl-base perl-base 5.36.0-7 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-3 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m5.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m6.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m6.3s INFO: Running scripts is_testable 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/is_testable_uninstallable'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/is_testable_uninstallable'] 0m6.3s INFO: Running scripts pre_test 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_test_exceptions'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_test_exceptions'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_test_root_password'] 0m6.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_test_root_password'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 0m6.6s DUMP: Package: med-cloud Source: debian-med Version: 3.8.1 Installed-Size: 30 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, bioperl, bioperl-run, biosquid, bowtie, bowtie2, boxshade, bwa, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, glam2, gmap, grinder, gromacs, hhsuite, hisat2, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, muscle3, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, plink1.9, plink2, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, python3-biomaj3-cli, python3-biopython, python3-cogent3, qiime, r-bioc-edger, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise Suggests: anfo, bagpipe, blast2, cufflinks, embassy-phylip, giira Description-en: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited. Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: metapackages Priority: optional Filename: pool/main/d/debian-med/med-cloud_3.8.1_all.deb Size: 9840 MD5sum: cd5b1d3ef2659a4481274dc65928bfe2 SHA256: cbe22fd5cef1e60ee3bcd916e66c28f812a76e62ff459d8dfc2b897e4068e419 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 0m6.6s INFO: apt-cache knows about the following packages: med-cloud 0m6.6s INFO: Running scripts pre_install 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_database-server'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_database-server'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_exceptions'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_exceptions'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_extras'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_extras'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy'] 0m6.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy', 'med-cloud'] 0m6.6s DUMP: med-cloud: Installed: (none) Candidate: 3.8.1 Version table: 3.8.1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy', 'med-cloud'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', '-y', 'install', 'med-cloud'] 0m7.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser blends-common liblocale-gettext-perl med-config med-tasks menu sensible-utils tasksel tasksel-data Suggested packages: cron quota blends-doc anfo bagpipe blast2 cufflinks embassy-phylip giira menu-l10n gksu | kde-cli-tools | ktsuss Recommended packages: abyss acedb-other aevol alien-hunter altree amap-align ampliconnoise aragorn arden autodock autodock-vina autogrid bamtools bedtools bioperl bioperl-run biosquid bowtie bowtie2 boxshade bwa cassiopee cd-hit cdbfasta circos clearcut clonalframe clustalo clustalw concavity conservation-code datamash dialign dialign-tx discosnp disulfinder dnaclust dssp embassy-domainatrix embassy-domalign embassy-domsearch emboss exonerate fastdnaml fastlink fastqc fasttree fitgcp flexbar freecontact gasic genometools gff2aplot gff2ps glam2 gmap grinder gromacs hhsuite hisat2 hmmer idba infernal jellyfish kalign kissplice last-align loki macs mafft mapsembler2 maq melting minia mipe mira-assembler mlv-smile mothur mrbayes mummer muscle muscle3 mustang ncbi-epcr ncbi-tools-bin ncoils neobio paraclu parsinsert pdb2pqr perm phyml phyutility picard-tools plink plink1.9 plink2 poa prank prime-phylo primer3 probabel probcons proda prodigal python3-biomaj3-cli python3-biopython python3-cogent3 qiime r-bioc-edger r-bioc-hilbertvis r-cran-pvclust r-cran-qtl r-cran-vegan r-other-mott-happy.hbrem raster3d readseq rnahybrid rtax samtools seqan-apps sibsim4 sigma-align sim4 smalt snap soapdenovo soapdenovo2 squizz sra-toolkit ssake staden-io-lib-utils t-coffee tabix theseus tigr-glimmer tree-puzzle | tree-ppuzzle vcftools velvet wise laptop-detect The following NEW packages will be installed: adduser blends-common liblocale-gettext-perl med-cloud med-config med-tasks menu sensible-utils tasksel tasksel-data 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 713 kB of archives. After this operation, 3084 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 tasksel-data all 3.72 [18.0 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 tasksel all 3.72 [51.0 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 adduser all 3.133 [183 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 menu amd64 2.1.49 [371 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 blends-common all 0.7.5 [25.2 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 med-config all 3.8.1 [11.1 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 med-tasks all 3.8.1 [8704 B] Get:10 http://deb.debian.org/debian bookworm/main amd64 med-cloud all 3.8.1 [9840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 713 kB in 0s (11.9 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8066 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package tasksel-data. Preparing to unpack .../tasksel-data_3.72_all.deb ... Unpacking tasksel-data (3.72) ... Selecting previously unselected package tasksel. Preparing to unpack .../archives/tasksel_3.72_all.deb ... Unpacking tasksel (3.72) ... Selecting previously unselected package adduser. Preparing to unpack .../archives/adduser_3.133_all.deb ... Unpacking adduser (3.133) ... Setting up adduser (3.133) ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8302 files and directories currently installed.) Preparing to unpack .../0-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package menu. Preparing to unpack .../1-menu_2.1.49_amd64.deb ... Unpacking menu (2.1.49) ... Selecting previously unselected package blends-common. Preparing to unpack .../2-blends-common_0.7.5_all.deb ... Unpacking blends-common (0.7.5) ... Selecting previously unselected package med-config. Preparing to unpack .../3-med-config_3.8.1_all.deb ... Unpacking med-config (3.8.1) ... Selecting previously unselected package med-tasks. Preparing to unpack .../4-med-tasks_3.8.1_all.deb ... Unpacking med-tasks (3.8.1) ... Selecting previously unselected package med-cloud. Preparing to unpack .../5-med-cloud_3.8.1_all.deb ... Unpacking med-cloud (3.8.1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up menu (2.1.49) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up tasksel (3.72) ... Setting up tasksel-data (3.72) ... Setting up med-tasks (3.8.1) ... Processing triggers for menu (2.1.49) ... Setting up blends-common (0.7.5) ... Setting up med-config (3.8.1) ... Adding group `med' (GID 150) ... Done. Setting up med-cloud (3.8.1) ... 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', '-y', 'install', 'med-cloud'] 0m7.8s INFO: Running scripts post_install 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_install_exceptions'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_install_exceptions'] 0m7.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m8.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpvvpqlpjq to sid 0m8.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m8.2s INFO: Running scripts pre_distupgrade 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', 'update'] 0m11.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [192 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9451 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6991 kB] Fetched 16.6 MB in 2s (7630 kB/s) Reading package lists... 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', 'update'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', '-yf', 'dist-upgrade'] 0m12.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: adduser apt libapt-pkg6.0 tasksel tasksel-data tzdata 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2828 kB of archives. After this operation, 53.2 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.6.1 [907 kB] Get:2 http://deb.debian.org/debian sid/main amd64 adduser all 3.134 [183 kB] Get:3 http://deb.debian.org/debian sid/main amd64 apt amd64 2.6.1 [1373 kB] Get:4 http://deb.debian.org/debian sid/main amd64 tasksel-data all 3.73 [18.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 tasksel all 3.73 [51.2 kB] Get:6 http://deb.debian.org/debian sid/main amd64 tzdata all 2023c-4 [296 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2828 kB in 0s (39.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8571 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.6.1_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.6.1) over (2.6.0) ... Setting up libapt-pkg6.0:amd64 (2.6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8571 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.134_all.deb ... Unpacking adduser (3.134) over (3.133) ... Setting up adduser (3.134) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8571 files and directories currently installed.) Preparing to unpack .../archives/apt_2.6.1_amd64.deb ... Unpacking apt (2.6.1) over (2.6.0) ... Setting up apt (2.6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8571 files and directories currently installed.) Preparing to unpack .../tasksel-data_3.73_all.deb ... Unpacking tasksel-data (3.73) over (3.72) ... Preparing to unpack .../archives/tasksel_3.73_all.deb ... Unpacking tasksel (3.73) over (3.72) ... Preparing to unpack .../tzdata_2023c-4_all.deb ... Unpacking tzdata (2023c-4) over (2023c-3) ... Setting up tzdata (2023c-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu May 25 22:30:48 UTC 2023. Universal Time is now: Thu May 25 22:30:48 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up tasksel (3.73) ... Processing triggers for menu (2.1.49) ... Processing triggers for libc-bin (2.36-9) ... Setting up tasksel-data (3.73) ... 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', '-yf', 'dist-upgrade'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.1s DUMP: 2946abd7db82d9818962f73da062a35f - 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 0m14.3s DUMP: Package: med-cloud Source: debian-med Version: 3.8.1 Installed-Size: 30 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, bioperl, bioperl-run, biosquid, bowtie, bowtie2, boxshade, bwa, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, glam2, gmap, grinder, gromacs, hhsuite, hisat2, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, muscle3, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, plink1.9, plink2, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, python3-biomaj3-cli, python3-biopython, python3-cogent3, qiime, r-bioc-edger, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise Suggests: anfo, bagpipe, blast2, cufflinks, embassy-phylip, giira Description-en: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited. Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: metapackages Priority: optional Filename: pool/main/d/debian-med/med-cloud_3.8.1_all.deb Size: 9840 MD5sum: cd5b1d3ef2659a4481274dc65928bfe2 SHA256: cbe22fd5cef1e60ee3bcd916e66c28f812a76e62ff459d8dfc2b897e4068e419 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 0m14.3s INFO: apt-cache knows about the following packages: med-cloud 0m14.3s INFO: Running scripts pre_install 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_database-server'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_database-server'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_exceptions'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_exceptions'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_extras'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_extras'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy'] 0m14.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy', 'med-cloud'] 0m14.4s DUMP: med-cloud: Installed: 3.8.1 Candidate: 3.8.1 Version table: *** 3.8.1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy', 'med-cloud'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', '-y', 'install', 'med-cloud'] 0m14.7s DUMP: Reading package lists... Building dependency tree... Reading state information... med-cloud is already the newest version (3.8.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', '-y', 'install', 'med-cloud'] 0m14.7s INFO: Running scripts post_install 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_install_exceptions'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_install_exceptions'] 0m14.7s INFO: Running scripts post_distupgrade 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_distupgrade_exceptions'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_distupgrade_exceptions'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_distupgrade_zz_backports'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_distupgrade_zz_backports'] 0m14.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m15.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m15.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m15.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m15.5s INFO: Running scripts pre_install 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_database-server'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_database-server'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_exceptions'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_exceptions'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy'] 0m15.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy', 'med-cloud'] 0m15.6s DUMP: med-cloud: Installed: 3.8.1 Candidate: 3.8.1 Version table: *** 3.8.1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-cache', 'policy', 'med-cloud'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', '-y', 'install', 'med-cloud=3.8.1'] 0m16.1s DUMP: Reading package lists... Building dependency tree... Reading state information... med-cloud is already the newest version (3.8.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', '-y', 'install', 'med-cloud=3.8.1'] 0m16.1s INFO: Running scripts post_install 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_install_exceptions'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_install_exceptions'] 0m16.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m16.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m17.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', '-ac', '--ignore-obsolete'] 0m17.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', '-ac', '--ignore-obsolete'] 0m17.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m17.7s DUMP: 0.15.6 0m17.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m17.7s INFO: Running adequate version 0.15.6 now. 0m17.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'med-cloud'] 0m17.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'med-cloud'] 0m17.8s INFO: Running scripts pre_remove 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_exceptions'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/pre_remove_exceptions'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.1s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed blends-common blends-common 0.7.5 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9 install ok installed libc6:amd64 libc6 2.36-9 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-5 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6 install ok installed libpam-runtime libpam-runtime 1.5.2-6 install ok installed libpam0g:amd64 libpam0g 1.5.2-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b5 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.6-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.6-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed med-cloud med-cloud 3.8.1 install ok installed med-config med-config 3.8.1 install ok installed med-tasks med-tasks 3.8.1 install ok installed menu menu 2.1.49 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl perl 5.36.0-7 install ok installed perl-base perl-base 5.36.0-7 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7 install ok installed sed sed 4.9-1 install ok installed sensible-utils sensible-utils 0.0.17+nmu1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tasksel tasksel 3.73 install ok installed tasksel-data tasksel-data 3.73 install ok installed tzdata tzdata 2023c-4 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', 'remove', 'blends-common', 'liblocale-gettext-perl', 'med-config', 'med-tasks', 'menu', 'sensible-utils', 'tasksel', 'tasksel-data', 'med-cloud'] 0m20.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: blends-common liblocale-gettext-perl med-cloud med-config med-tasks menu sensible-utils tasksel tasksel-data 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. After this operation, 2382 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8569 files and directories currently installed.) Removing med-cloud (3.8.1) ... Removing med-config (3.8.1) ... Removing blends-common (0.7.5) ... Removing med-tasks (3.8.1) ... Removing menu (2.1.49) ... Removing sensible-utils (0.0.17+nmu1) ... Removing tasksel (3.73) ... Removing tasksel-data (3.73) ... Removing liblocale-gettext-perl (1.07-5) ... 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', 'remove', 'blends-common', 'liblocale-gettext-perl', 'med-config', 'med-tasks', 'menu', 'sensible-utils', 'tasksel', 'tasksel-data', 'med-cloud'] 0m20.0s INFO: Running scripts post_remove 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_remove_exceptions'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_remove_exceptions'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg', '--purge', 'blends-common', 'liblocale-gettext-perl', 'med-config', 'med-tasks', 'menu', 'sensible-utils', 'tasksel', 'tasksel-data'] 0m20.2s DUMP: (Reading database ... 8152 files and directories currently installed.) Purging configuration files for blends-common (0.7.5) ... dpkg: warning: ignoring request to remove liblocale-gettext-perl which isn't installed Purging configuration files for med-config (3.8.1) ... dpkg: warning: ignoring request to remove med-tasks which isn't installed Purging configuration files for menu (2.1.49) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for tasksel (3.73) ... dpkg: warning: ignoring request to remove tasksel-data which isn't installed 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg', '--purge', 'blends-common', 'liblocale-gettext-perl', 'med-config', 'med-tasks', 'menu', 'sensible-utils', 'tasksel', 'tasksel-data'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg', '--purge', 'med-cloud'] 0m20.2s DUMP: dpkg: warning: ignoring request to remove med-cloud which isn't installed 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg', '--purge', 'med-cloud'] 0m20.2s INFO: Running scripts post_purge 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_purge_exceptions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_purge_exceptions'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg', '--purge', '--pending'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg', '--purge', '--pending'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg', '--remove', '--pending'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg', '--remove', '--pending'] 0m20.2s INFO: Running scripts post_test 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_test_exceptions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'tmp/scripts/post_test_exceptions'] 0m20.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m20.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg-divert', '--list'] 0m20.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'dpkg-divert', '--list'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', 'clean'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq', 'apt-get', 'clean'] 0m20.7s DEBUG: Recording chroot state 0m21.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/shm'] 0m21.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/shm'] 0m21.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/console'] 0m21.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/console'] 0m21.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/ptmx'] 0m21.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/ptmx'] 0m21.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/pts'] 0m21.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/dev/pts'] 0m21.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/proc'] 0m21.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq/proc'] 0m21.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m21.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvvpqlpjq'] 0m21.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpvvpqlpjq 0m22.0s INFO: PASS: Upgrading between Debian distributions. 0m22.0s INFO: PASS: All tests. 0m22.0s INFO: piuparts run ends. ret=0 End: 2023-05-25 22:30:58 GMT