Start: 2021-02-21 23:57:09 GMT [testing] Package: mipe Version: 1.1-8 Installed-Size: 207 Maintainer: Debian Med Packaging Team Architecture: all Depends: libxml-twig-perl, libxml-perl, perl:any Description: Tools to store PCR-derived data Homepage: http://mipe.sourceforge.net Description-md5: 6847835b93b62243d086501dc2b27160 Tag: field::biology, field::biology:bioinformatics, field::biology:molecular, implemented-in::perl, interface::commandline, role::TODO, role::documentation, role::program, scope::utility, use::organizing, works-with-format::xml, works-with::TODO Section: science Priority: optional Filename: pool/main/m/mipe/mipe_1.1-8_all.deb Size: 60792 MD5sum: 89d0cc91e38e71cf5d7039caa893b0ef SHA256: 66363b2503dfa740f4cf2ef8bc4284caf07771b1116edfbf84ef35ce2260d45e [sid] Package: mipe Version: 1.1-9 Installed-Size: 211 Maintainer: Debian Med Packaging Team Architecture: all Depends: libxml-twig-perl, libxml-perl, perl:any Description: Tools to store PCR-derived data Homepage: http://mipe.sourceforge.net Description-md5: 6847835b93b62243d086501dc2b27160 Tag: field::biology, field::biology:bioinformatics, field::biology:molecular, implemented-in::perl, interface::commandline, role::TODO, role::documentation, role::program, scope::utility, use::organizing, works-with-format::xml, works-with::TODO Section: science Priority: optional Filename: pool/main/m/mipe/mipe_1.1-9_all.deb Size: 62760 MD5sum: 63c8d714402151acdf4a06b03f88ad29 SHA256: adacae3d39190ad71332bf17423243e6e2bf77fbdb41a0302b1be2f5b6c78fe1 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt mipe=1.1-9 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt mipe=1.1-9 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-14-amd64 #1 SMP Debian 4.19.171-2 (2021-01-30) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp_hkhktjt 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp_hkhktjt 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp_hkhktjt/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', 'update'] 0m4.9s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [123 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [8209 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [6264 kB] Fetched 14.6 MB in 2s (6234 kB/s) Reading package lists... 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', 'update'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libselinux1 libssl1.1 libzstd1 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1964 kB of archives. After this operation, 2048 B disk space will be freed. Get:1 http://deb.debian.org/debian bullseye/main amd64 libselinux1 amd64 3.1-3 [88.1 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libssl1.1 amd64 1.1.1j-1 [1554 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libzstd1 amd64 1.4.8+dfsg-2 [321 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1964 kB in 0s (30.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6648 files and directories currently installed.) Preparing to unpack .../libselinux1_3.1-3_amd64.deb ... Unpacking libselinux1:amd64 (3.1-3) over (3.1-2+b2) ... Setting up libselinux1:amd64 (3.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6647 files and directories currently installed.) Preparing to unpack .../libssl1.1_1.1.1j-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1j-1) over (1.1.1i-3) ... Setting up libssl1.1:amd64 (1.1.1j-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6647 files and directories currently installed.) Preparing to unpack .../libzstd1_1.4.8+dfsg-2_amd64.deb ... Unpacking libzstd1:amd64 (1.4.8+dfsg-2) over (1.4.8+dfsg-1) ... Setting up libzstd1:amd64 (1.4.8+dfsg-2) ... Processing triggers for libc-bin (2.31-9) ... 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s DUMP: 94f1343a62ec6c382ec1bc1030f1a453 - 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s INFO: Running scripts post_setup 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_dummy_users'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_dummy_users'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_forbid_home'] 0m6.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_forbid_home'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_minimize'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_minimize'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_zz_backports'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_setup_zz_backports'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.0s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.20 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.49 install ok installed bash bash 5.1-2 install ok installed bsdutils bsdutils 1:2.36.1-7 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.7.1 install ok installed e2fsprogs e2fsprogs 1.46.1-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.20 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-7 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-9 install ok installed libc6:amd64 libc6 2.31-9 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.256 install ok installed libext2fs2:amd64 libext2fs2 1.46.1-1 install ok installed libffi7:amd64 libffi7 3.3-5 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.0-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-4 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.5-1.0 install ok installed libmount1:amd64 libmount1 2.36.1-7 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-4 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-4 install ok installed libpam-runtime libpam-runtime 1.4.0-4 install ok installed libpam0g:amd64 libpam0g 1.4.0-4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-7 install ok installed libss2:amd64 libss2 1.46.1-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1j-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2 install ok installed libtirpc-common libtirpc-common 1.3.1-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1 install ok installed libudev1:amd64 libudev1 247.3-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-7 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.1-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-7 install ok installed ncurses-base ncurses-base 6.2+20201114-2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-2 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.32+dfsg-1 install ok installed tzdata tzdata 2021a-1 install ok installed util-linux util-linux 2.36.1-7 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m7.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m7.2s INFO: Running scripts is_testable 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/is_testable_uninstallable'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/is_testable_uninstallable'] 0m7.3s INFO: Running scripts pre_test 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_test_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_test_exceptions'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_test_root_password'] 0m7.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_test_root_password'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'show', '--no-all-versions', 'mipe'] 0m7.5s DUMP: Package: mipe Version: 1.1-8 Installed-Size: 207 Maintainer: Debian Med Packaging Team Architecture: all Depends: libxml-twig-perl, libxml-perl, perl:any Description-en: Tools to store PCR-derived data MIPE provides a standard format to exchange and/or storage of all information associated with PCR experiments using a flat text file. This will: * allow for exchange of PCR data between researchers/laboratories * enable traceability of the data * prevent problems when submitting data to dbSTS or dbSNP * enable the writing of standard scripts to extract data (e.g. a list of PCR primers, SNP positions or haplotypes for different animals) . Although this tool can be used for data storage, it's primary focus should be data exchange. For larger repositories, relational databases are more appropriate for storage of these data. The MIPE format could then be used as a standard format to import into and/or export from these databases. Description-md5: 6847835b93b62243d086501dc2b27160 Homepage: http://mipe.sourceforge.net Tag: field::biology, field::biology:bioinformatics, field::biology:molecular, implemented-in::perl, interface::commandline, role::TODO, role::documentation, role::program, scope::utility, use::organizing, works-with-format::xml, works-with::TODO Section: science Priority: optional Filename: pool/main/m/mipe/mipe_1.1-8_all.deb Size: 60792 MD5sum: 89d0cc91e38e71cf5d7039caa893b0ef SHA256: 66363b2503dfa740f4cf2ef8bc4284caf07771b1116edfbf84ef35ce2260d45e 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'show', '--no-all-versions', 'mipe'] 0m7.5s INFO: apt-cache knows about the following packages: mipe 0m7.5s INFO: Running scripts pre_install 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_database-server'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_database-server'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_exceptions'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_exceptions'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_extras'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_extras'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy'] 0m7.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy', 'mipe'] 0m7.5s DUMP: mipe: Installed: (none) Candidate: 1.1-8 Version table: 1.1-8 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy', 'mipe'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', '-y', 'install', 'mipe'] 0m13.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates libencode-locale-perl libexpat1 libfile-listing-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.32 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-perl libxml-twig-perl netbase openssl perl perl-modules-5.32 perl-openssl-defaults Suggested packages: gdbm-l10n libdata-dump-perl libcrypt-ssleay-perl sensible-utils libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl Recommended packages: libhtml-format-perl libclone-perl libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libtext-iconv-perl libtie-ixhash-perl libxml-xpathengine-perl | libxml-xpath-perl The following NEW packages will be installed: ca-certificates libencode-locale-perl libexpat1 libfile-listing-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.32 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-perl libxml-twig-perl mipe netbase openssl perl perl-modules-5.32 perl-openssl-defaults 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 10.4 MB of archives. After this operation, 55.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-2 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-2 [4101 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-2 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 netbase all 6.2 [19.9 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1j-1 [850 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-1 [96.9 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libfile-listing-perl all 6.14-1 [12.4 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 liburi-perl all 5.07-1 [90.4 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libhtml-parser-perl amd64 3.75-1+b1 [105 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libio-html-perl all 1.001-1.1 [18.6 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libhttp-message-perl all 6.27-1 [79.5 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 perl-openssl-defaults amd64 5 [7360 B] Get:24 http://deb.debian.org/debian bullseye/main amd64 libnet-ssleay-perl amd64 1.88-3+b1 [321 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 libio-socket-ssl-perl all 2.069-1 [215 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libnet-http-perl all 6.20-1 [25.1 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libwww-perl all 6.52-1 [192 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libxml-parser-perl amd64 2.46-2 [206 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 libxml-perl all 0.08-3.1 [93.9 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libxml-twig-perl all 1:3.52-1 [181 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 mipe all 1.1-8 [60.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.4 MB in 0s (42.9 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6649 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.32_5.32.1-2_all.deb ... Unpacking perl-modules-5.32 (5.32.1-2) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../02-libgdbm-compat4_1.19-2_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.19-2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../03-libperl5.32_5.32.1-2_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-2) ... Selecting previously unselected package perl. Preparing to unpack .../04-perl_5.32.1-2_amd64.deb ... Unpacking perl (5.32.1-2) ... Selecting previously unselected package netbase. Preparing to unpack .../05-netbase_6.2_all.deb ... Unpacking netbase (6.2) ... Selecting previously unselected package openssl. Preparing to unpack .../06-openssl_1.1.1j-1_amd64.deb ... Unpacking openssl (1.1.1j-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../07-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../08-libencode-locale-perl_1.05-1.1_all.deb ... Unpacking libencode-locale-perl (1.05-1.1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../09-libexpat1_2.2.10-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../10-libtimedate-perl_2.3300-1_all.deb ... Unpacking libtimedate-perl (2.3300-1) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../11-libhttp-date-perl_6.05-1_all.deb ... Unpacking libhttp-date-perl (6.05-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../12-libfile-listing-perl_6.14-1_all.deb ... Unpacking libfile-listing-perl (6.14-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../13-libhtml-tagset-perl_3.20-4_all.deb ... Unpacking libhtml-tagset-perl (3.20-4) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../14-liburi-perl_5.07-1_all.deb ... Unpacking liburi-perl (5.07-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../15-libhtml-parser-perl_3.75-1+b1_amd64.deb ... Unpacking libhtml-parser-perl (3.75-1+b1) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../16-libhtml-tree-perl_5.07-2_all.deb ... Unpacking libhtml-tree-perl (5.07-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../17-libio-html-perl_1.001-1.1_all.deb ... Unpacking libio-html-perl (1.001-1.1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../18-liblwp-mediatypes-perl_6.04-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../19-libhttp-message-perl_6.27-1_all.deb ... Unpacking libhttp-message-perl (6.27-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../20-libhttp-cookies-perl_6.10-1_all.deb ... Unpacking libhttp-cookies-perl (6.10-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../21-libhttp-negotiate-perl_6.01-1_all.deb ... Unpacking libhttp-negotiate-perl (6.01-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../22-perl-openssl-defaults_5_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (5) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../23-libnet-ssleay-perl_1.88-3+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.88-3+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../24-libio-socket-ssl-perl_2.069-1_all.deb ... Unpacking libio-socket-ssl-perl (2.069-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../25-libnet-http-perl_6.20-1_all.deb ... Unpacking libnet-http-perl (6.20-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../26-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../27-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../28-libwww-perl_6.52-1_all.deb ... Unpacking libwww-perl (6.52-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../29-liblwp-protocol-https-perl_6.10-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.10-1) ... Selecting previously unselected package libxml-parser-perl:amd64. Preparing to unpack .../30-libxml-parser-perl_2.46-2_amd64.deb ... Unpacking libxml-parser-perl:amd64 (2.46-2) ... Selecting previously unselected package libxml-perl. Preparing to unpack .../31-libxml-perl_0.08-3.1_all.deb ... Unpacking libxml-perl (0.08-3.1) ... Selecting previously unselected package libxml-twig-perl. Preparing to unpack .../32-libxml-twig-perl_1%3a3.52-1_all.deb ... Unpacking libxml-twig-perl (1:3.52-1) ... Selecting previously unselected package mipe. Preparing to unpack .../33-mipe_1.1-8_all.deb ... Unpacking mipe (1.1-8) ... Setting up libexpat1:amd64 (2.2.10-1) ... Setting up perl-modules-5.32 (5.32.1-2) ... Setting up perl-openssl-defaults:amd64 (5) ... Setting up netbase (6.2) ... Setting up openssl (1.1.1j-1) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up libperl5.32:amd64 (5.32.1-2) ... Setting up perl (5.32.1-2) ... Setting up libio-html-perl (1.001-1.1) ... Setting up libtimedate-perl (2.3300-1) ... Setting up liburi-perl (5.07-1) ... Setting up libnet-ssleay-perl (1.88-3+b1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libfile-listing-perl (6.14-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libnet-http-perl (6.20-1) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up libio-socket-ssl-perl (2.069-1) ... Setting up libhttp-message-perl (6.27-1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libwww-perl (6.52-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libxml-parser-perl:amd64 (2.46-2) ... Setting up libxml-twig-perl (1:3.52-1) ... Setting up libxml-perl (0.08-3.1) ... Setting up mipe (1.1-8) ... Processing triggers for libc-bin (2.31-9) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', '-y', 'install', 'mipe'] 0m13.3s INFO: Running scripts post_install 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_install_exceptions'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_install_exceptions'] 0m13.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m13.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m13.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp_hkhktjt to sid 0m13.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m13.7s INFO: Running scripts pre_distupgrade 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', 'update'] 0m17.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [153 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8594 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6478 kB] Fetched 15.2 MB in 3s (5856 kB/s) Reading package lists... 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', 'update'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', '-yf', 'dist-upgrade'] 0m19.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt gpgv libapt-pkg6.0 libffi7 libgcrypt20 libgnutls30 libhogweed6 libhttp-message-perl libio-html-perl libnettle8 libtimedate-perl mipe sysvinit-utils tar 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6698 kB of archives. After this operation, 56.3 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1 [847 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.8.7-3 [563 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.2.0 [1012 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.27-1 [625 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.7-2 [267 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.7-2 [319 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.7.0-7 [1330 kB] Get:8 http://deb.debian.org/debian sid/main amd64 apt amd64 2.2.0 [1491 kB] Get:9 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 2.96-6 [25.2 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libffi7 amd64 3.3-6 [23.1 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libio-html-perl all 1.004-2 [16.1 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libhttp-message-perl all 6.28-1 [79.6 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:14 http://deb.debian.org/debian sid/main amd64 mipe all 1.1-9 [62.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6698 kB in 0s (28.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9663 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1_amd64.deb ... Unpacking tar (1.34+dfsg-1) over (1.32+dfsg-1) ... Setting up tar (1.34+dfsg-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9663 files and directories currently installed.) Preparing to unpack .../libio-html-perl_1.004-2_all.deb ... Unpacking libio-html-perl (1.004-2) over (1.001-1.1) ... Preparing to unpack .../libhttp-message-perl_6.28-1_all.deb ... Unpacking libhttp-message-perl (6.28-1) over (6.27-1) ... Preparing to unpack .../libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) over (2.3300-1) ... Preparing to unpack .../archives/mipe_1.1-9_all.deb ... Unpacking mipe (1.1-9) over (1.1-8) ... Setting up mipe (1.1-9) ... Setting up libio-html-perl (1.004-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libhttp-message-perl (6.28-1) ... Processing triggers for libc-bin (2.31-9) ... 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', '-yf', 'dist-upgrade'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m20.1s DUMP: f4c53bf04a96461466293b3d7b6ca1c3 - 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'show', '--no-all-versions', 'mipe'] 0m20.3s DUMP: Package: mipe Version: 1.1-9 Installed-Size: 211 Maintainer: Debian Med Packaging Team Architecture: all Depends: libxml-twig-perl, libxml-perl, perl:any Description-en: Tools to store PCR-derived data MIPE provides a standard format to exchange and/or storage of all information associated with PCR experiments using a flat text file. This will: * allow for exchange of PCR data between researchers/laboratories * enable traceability of the data * prevent problems when submitting data to dbSTS or dbSNP * enable the writing of standard scripts to extract data (e.g. a list of PCR primers, SNP positions or haplotypes for different animals) . Although this tool can be used for data storage, it's primary focus should be data exchange. For larger repositories, relational databases are more appropriate for storage of these data. The MIPE format could then be used as a standard format to import into and/or export from these databases. Description-md5: 6847835b93b62243d086501dc2b27160 Homepage: http://mipe.sourceforge.net Tag: field::biology, field::biology:bioinformatics, field::biology:molecular, implemented-in::perl, interface::commandline, role::TODO, role::documentation, role::program, scope::utility, use::organizing, works-with-format::xml, works-with::TODO Section: science Priority: optional Filename: pool/main/m/mipe/mipe_1.1-9_all.deb Size: 62760 MD5sum: 63c8d714402151acdf4a06b03f88ad29 SHA256: adacae3d39190ad71332bf17423243e6e2bf77fbdb41a0302b1be2f5b6c78fe1 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'show', '--no-all-versions', 'mipe'] 0m20.3s INFO: apt-cache knows about the following packages: mipe 0m20.3s INFO: Running scripts pre_install 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_database-server'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_database-server'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_exceptions'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_exceptions'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_extras'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_extras'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy'] 0m20.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy', 'mipe'] 0m20.4s DUMP: mipe: Installed: 1.1-9 Candidate: 1.1-9 Version table: *** 1.1-9 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy', 'mipe'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', '-y', 'install', 'mipe'] 0m20.7s DUMP: Reading package lists... Building dependency tree... Reading state information... mipe is already the newest version (1.1-9). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', '-y', 'install', 'mipe'] 0m20.7s INFO: Running scripts post_install 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_install_exceptions'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_install_exceptions'] 0m20.7s INFO: Running scripts post_distupgrade 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m21.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m21.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m21.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m21.6s INFO: Running scripts pre_install 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_database-server'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_database-server'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_exceptions'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_exceptions'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_extras'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_extras'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy'] 0m21.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy', 'mipe'] 0m21.7s DUMP: mipe: Installed: 1.1-9 Candidate: 1.1-9 Version table: *** 1.1-9 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-cache', 'policy', 'mipe'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', '-y', 'install', 'mipe=1.1-9'] 0m22.0s DUMP: Reading package lists... Building dependency tree... Reading state information... mipe is already the newest version (1.1-9). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', '-y', 'install', 'mipe=1.1-9'] 0m22.0s INFO: Running scripts post_install 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_install_exceptions'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_install_exceptions'] 0m22.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m22.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m22.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', '-ac', '--ignore-obsolete'] 0m23.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', '-ac', '--ignore-obsolete'] 0m23.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.8s DUMP: 0.15.2 0m23.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.8s INFO: Running adequate version 0.15.2 now. 0m23.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'mipe'] 0m24.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'mipe'] 0m24.0s INFO: Running scripts pre_remove 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_exceptions'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/pre_remove_exceptions'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.0s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.2.0 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.49 install ok installed bash bash 5.1-2 install ok installed bsdutils bsdutils 1:2.36.1-7 install ok installed ca-certificates ca-certificates 20210119 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.7.1 install ok installed e2fsprogs e2fsprogs 1.46.1-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-1 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.0 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-7 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-9 install ok installed libc6:amd64 libc6 2.31-9 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.256 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1.1 install ok installed libexpat1:amd64 libexpat1 2.2.10-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.1-1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfile-listing-perl libfile-listing-perl 6.14-1 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.0-7 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-4 install ok installed libhogweed6:amd64 libhogweed6 3.7-2 install ok installed libhtml-parser-perl libhtml-parser-perl 3.75-1+b1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-4 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.10-1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-1 install ok installed libhttp-message-perl libhttp-message-perl 6.28-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libio-html-perl libio-html-perl 1.004-2 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.069-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-4 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.10-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.5-1.0 install ok installed libmount1:amd64 libmount1 2.36.1-7 install ok installed libnet-http-perl libnet-http-perl 6.20-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.88-3+b1 install ok installed libnettle8:amd64 libnettle8 3.7-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-4 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-4 install ok installed libpam-runtime libpam-runtime 1.4.0-4 install ok installed libpam0g:amd64 libpam0g 1.4.0-4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-2 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-7 install ok installed libss2:amd64 libss2 1.46.1-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1j-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2 install ok installed libtirpc-common libtirpc-common 1.3.1-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libudev1:amd64 libudev1 247.3-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed liburi-perl liburi-perl 5.07-1 install ok installed libuuid1:amd64 libuuid1 2.36.1-7 install ok installed libwww-perl libwww-perl 6.52-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libxml-parser-perl:amd64 libxml-parser-perl 2.46-2 install ok installed libxml-perl libxml-perl 0.08-3.1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.52-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.1-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mipe mipe 1.1-9 install ok installed mount mount 2.36.1-7 install ok installed ncurses-base ncurses-base 6.2+20201114-2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2 install ok installed netbase netbase 6.2 install ok installed openssl openssl 1.1.1j-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-2 install ok installed perl-base perl-base 5.32.1-2 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-2 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 5 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-6 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1 install ok installed util-linux util-linux 2.36.1-7 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', 'remove', 'ca-certificates', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libperl5.32:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-twig-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'mipe'] 0m26.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates libencode-locale-perl libexpat1 libfile-listing-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.32 libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-perl libxml-twig-perl mipe netbase openssl perl perl-modules-5.32 perl-openssl-defaults 0 upgraded, 0 newly installed, 34 to remove and 0 not upgraded. After this operation, 55.7 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9665 files and directories currently installed.) Removing mipe (1.1-9) ... Removing libxml-twig-perl (1:3.52-1) ... Removing libxml-perl (0.08-3.1) ... Removing libxml-parser-perl:amd64 (2.46-2) ... Removing libexpat1:amd64 (2.2.10-1) ... Removing liblwp-protocol-https-perl (6.10-1) ... Removing libwww-perl (6.52-1) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.01-1) ... Removing libhttp-cookies-perl (6.10-1) ... Removing libhttp-message-perl (6.28-1) ... Removing libencode-locale-perl (1.05-1.1) ... Removing libfile-listing-perl (6.14-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libhttp-date-perl (6.05-1) ... Removing libtry-tiny-perl (0.30-1) ... Removing libnet-http-perl (6.20-1) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.75-1+b1) ... Removing libhtml-tagset-perl (3.20-4) ... Removing libio-html-perl (1.004-2) ... Removing libio-socket-ssl-perl (2.069-1) ... Removing liblwp-mediatypes-perl (6.04-1) ... Removing libnet-ssleay-perl (1.88-3+b1) ... Removing libtimedate-perl (2.3300-2) ... Removing netbase (6.2) ... Removing openssl (1.1.1j-1) ... Removing perl-openssl-defaults:amd64 (5) ... Removing liburi-perl (5.07-1) ... Removing perl (5.32.1-2) ... Removing libperl5.32:amd64 (5.32.1-2) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing perl-modules-5.32 (5.32.1-2) ... Processing triggers for libc-bin (2.31-9) ... 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', 'remove', 'ca-certificates', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libperl5.32:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-twig-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'mipe'] 0m26.2s INFO: Running scripts post_remove 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_remove_exceptions'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_remove_exceptions'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg', '--purge', 'ca-certificates', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libperl5.32:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-twig-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64'] 0m26.3s DUMP: (Reading database ... 6659 files and directories currently installed.) Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed Purging configuration files for netbase (6.2) ... Purging configuration files for openssl (1.1.1j-1) ... Purging configuration files for perl (5.32.1-2) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg', '--purge', 'ca-certificates', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libperl5.32:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-twig-perl', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg', '--purge', 'mipe'] 0m26.4s DUMP: dpkg: warning: ignoring request to remove mipe which isn't installed 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg', '--purge', 'mipe'] 0m26.4s INFO: Running scripts post_purge 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_purge_exceptions'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_purge_exceptions'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg', '--purge', '--pending'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg', '--purge', '--pending'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg', '--remove', '--pending'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg', '--remove', '--pending'] 0m26.4s INFO: Running scripts post_test 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_test_exceptions'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'tmp/scripts/post_test_exceptions'] 0m26.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m26.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg-divert', '--list'] 0m26.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'dpkg-divert', '--list'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', 'clean'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt', 'apt-get', 'clean'] 0m26.8s DEBUG: Recording chroot state 0m27.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/shm'] 0m27.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/shm'] 0m27.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/console'] 0m27.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/console'] 0m27.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/ptmx'] 0m27.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/ptmx'] 0m27.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/pts'] 0m27.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/dev/pts'] 0m27.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/proc'] 0m27.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt/proc'] 0m27.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m27.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_hkhktjt'] 0m27.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp_hkhktjt 0m27.5s INFO: PASS: Upgrading between Debian distributions. 0m27.5s INFO: PASS: All tests. 0m27.5s INFO: piuparts run ends. ret=0 End: 2021-02-21 23:57:36 GMT