Start: 2026-10-08 10:05:59 GMT [testing] Package: mira-assembler Source: mira (4.9.6-12) Version: 4.9.6-12+b1 Installed-Size: 8428 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-filesystem1.90.0 (>= 1.90.0), libboost-thread1.90.0 (>= 1.90.0), libc6 (>= 2.38), libexpat1 (>= 2.0.1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 14), zlib1g (>= 1:1.2.6) Recommends: mira-rfam-12s-rrna Suggests: mira-doc Description: Whole Genome Shotgun and EST Sequence Assembler Homepage: https://sourceforge.net/p/mira-assembler/wiki/Home/ Description-md5: a8c6d1905e05378eb5c622bc2c3fc577 Tag: role::program Section: science Priority: optional Filename: pool/main/m/mira/mira-assembler_4.9.6-12+b1_amd64.deb Size: 2719752 MD5sum: 857ce5904c58d22849bbdacf7717a823 SHA256: 03e41eb8013edbb3657b11ca5e2eff1400ac3099fcb0487f6893181c0157462f [sid] Package: mira-assembler Source: mira (4.9.6-12) Version: 4.9.6-12+b2 Installed-Size: 8627 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-filesystem1.92.0 (>= 1.92.0), libboost-thread1.92.0 (>= 1.92.0), libc6 (>= 2.38), libexpat1 (>= 2.0.1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 14), zlib1g (>= 1:1.2.6) Recommends: mira-rfam-12s-rrna Suggests: mira-doc Description: Whole Genome Shotgun and EST Sequence Assembler Homepage: https://sourceforge.net/p/mira-assembler/wiki/Home/ Description-md5: a8c6d1905e05378eb5c622bc2c3fc577 Tag: role::program Section: science Priority: optional Filename: pool/main/m/mira/mira-assembler_4.9.6-12+b2_amd64.deb Size: 2800272 MD5sum: 95ed839ddd1866dd9a871fb80ba11bc6 SHA256: 0bdb40738b35a13c06d14338ab94313b73cdca081a24d9c76047b885dac7c909 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt mira-assembler=4.9.6-12+b2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt mira-assembler=4.9.6-12+b2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.111+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.111-1 (2026-09-28) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpg9k196em 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpg9k196em 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg9k196em', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg9k196em', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg9k196em/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg9k196em/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/12', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/12', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpg9k196em/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', 'update'] 0m2.5s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9993 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6617 kB] Fetched 16.8 MB in 1s (15.1 MB/s) Reading package lists... 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', 'update'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libmd0 libmount1 libsmartcols1 libuuid1 login login.defs mount passwd tzdata util-linux 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4079 kB of archives. After this operation, 98.3 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.42.4-1 [34.5 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.42.4-1 [185 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.42.4-1 [232 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.42.4-1 [153 kB] Get:5 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.42.4-1 [1254 kB] Get:6 http://deb.debian.org/debian forky/main amd64 mount amd64 2.42.4-1 [172 kB] Get:7 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.42.4-1 [124 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libmd0 amd64 1.3.0-1 [45.4 kB] Get:9 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.42.4-1 [92.9 kB] Get:10 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.20.2-2 [223 kB] Get:11 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.20.2-2 [1300 kB] Get:12 http://deb.debian.org/debian forky/main amd64 tzdata all 2026e-1 [262 kB] Preconfiguring packages ... Fetched 4079 kB in 0s (46.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libuuid1_2.42.4-1_amd64.deb ... Unpacking libuuid1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libuuid1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libblkid1_2.42.4-1_amd64.deb ... Unpacking libblkid1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libblkid1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libmount1_2.42.4-1_amd64.deb ... Unpacking libmount1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libmount1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.42.4-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libsmartcols1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../util-linux_2.42.4-1_amd64.deb ... Unpacking util-linux (2.42.4-1) over (2.42.3-1) ... Setting up util-linux (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../mount_2.42.4-1_amd64.deb ... Unpacking mount (2.42.4-1) over (2.42.3-1) ... Preparing to unpack .../login_1%3a4.16.0-2+really2.42.4-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.42.4-1) over (1:4.16.0-2+really2.42.3-1) ... Preparing to unpack .../libmd0_1.3.0-1_amd64.deb ... Unpacking libmd0:amd64 (1.3.0-1) over (1.2.0-2) ... Setting up libmd0:amd64 (1.3.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.42.4-1_amd64.deb ... Unpacking bsdutils (1:2.42.4-1) over (1:2.42.3-1) ... Preparing to unpack .../login.defs_1%3a4.20.2-2_all.deb ... Unpacking login.defs (1:4.20.2-2) over (1:4.19.3-2) ... Preparing to unpack .../passwd_1%3a4.20.2-2_amd64.deb ... Unpacking passwd (1:4.20.2-2) over (1:4.19.3-2) ... Preparing to unpack .../tzdata_2026e-1_all.deb ... Unpacking tzdata (2026e-1) over (2026c-1) ... Setting up bsdutils (1:2.42.4-1) ... Setting up login.defs (1:4.20.2-2) ... Installing new version of config file /etc/login.defs ... Setting up tzdata (2026e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Oct 8 10:06:04 UTC 2026. Universal Time is now: Thu Oct 8 10:06:04 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up passwd (1:4.20.2-2) ... Setting up mount (2.42.4-1) ... Setting up login (1:4.16.0-2+really2.42.4-1) ... Processing triggers for libc-bin (2.43-6) ... 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.7s DUMP: d08f8b64854f02549db22334ae5e0815 - 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.7s INFO: Running scripts post_setup 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_forbid_home'] 0m6.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_forbid_home'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_minimize'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_minimize'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_zz_backports'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_setup_zz_backports'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.5s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-6 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-6 install ok installed libc6:amd64 libc6 2.43-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.2-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.20.2-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m6.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m6.9s INFO: Running scripts is_testable 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/is_testable_uninstallable'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/is_testable_uninstallable'] 0m6.9s INFO: Running scripts pre_test 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_test_exceptions'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_test_exceptions'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_test_root_password'] 0m7.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_test_root_password'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'show', '--no-all-versions', 'mira-assembler'] 0m7.3s DUMP: Package: mira-assembler Source: mira (4.9.6-12) Version: 4.9.6-12+b1 Installed-Size: 8428 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-filesystem1.90.0 (>= 1.90.0), libboost-thread1.90.0 (>= 1.90.0), libc6 (>= 2.38), libexpat1 (>= 2.0.1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 14), zlib1g (>= 1:1.2.6) Recommends: mira-rfam-12s-rrna Suggests: mira-doc Description-en: Whole Genome Shotgun and EST Sequence Assembler The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof. . The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments. . The package provides the following executables: Binaries provided: * mira: for assembly of genome sequences * miramem: estimating memory needed to assemble projects. * mirabait: a "grep" like tool to select reads with kmers up to 256 bases. * miraconvert: is a tool to convert, extract and sometimes recalculate all kinds of data related to sequence assembly files. Description-md5: a8c6d1905e05378eb5c622bc2c3fc577 Homepage: https://sourceforge.net/p/mira-assembler/wiki/Home/ Tag: role::program Section: science Priority: optional Filename: pool/main/m/mira/mira-assembler_4.9.6-12+b1_amd64.deb Size: 2719752 MD5sum: 857ce5904c58d22849bbdacf7717a823 SHA256: 03e41eb8013edbb3657b11ca5e2eff1400ac3099fcb0487f6893181c0157462f 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'show', '--no-all-versions', 'mira-assembler'] 0m7.3s INFO: apt-cache knows about the following packages: mira-assembler 0m7.3s INFO: Running scripts pre_install 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_database-server'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_database-server'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy'] 0m7.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy', 'mira-assembler'] 0m7.4s DUMP: mira-assembler: Installed: (none) Candidate: 4.9.6-12+b1 Version table: 4.9.6-12+b1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy', 'mira-assembler'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', '-y', 'install', 'mira-assembler'] 0m9.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: libboost-filesystem1.90.0 libboost-thread1.90.0 libexpat1 libgomp1 Suggested packages: mira-doc Recommended packages: mira-rfam-12s-rrna The following NEW packages will be installed: libboost-filesystem1.90.0 libboost-thread1.90.0 libexpat1 libgomp1 mira-assembler 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 3555 kB of archives. After this operation, 14.1 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.8.4-2 [130 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libboost-filesystem1.90.0 amd64 1.90.0-6.1+b1 [295 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libboost-thread1.90.0 amd64 1.90.0-6.1+b1 [260 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 16.2.0-3 [151 kB] Get:5 http://deb.debian.org/debian forky/main amd64 mira-assembler amd64 4.9.6-12+b1 [2720 kB] Fetched 3555 kB in 0s (36.5 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4950 files and directories currently installed.) Preparing to unpack .../libexpat1_2.8.4-2_amd64.deb ... Unpacking libexpat1:amd64 (2.8.4-2) ... Selecting previously unselected package libboost-filesystem1.90.0:amd64. Preparing to unpack .../libboost-filesystem1.90.0_1.90.0-6.1+b1_amd64.deb ... Unpacking libboost-filesystem1.90.0:amd64 (1.90.0-6.1+b1) ... Selecting previously unselected package libboost-thread1.90.0:amd64. Preparing to unpack .../libboost-thread1.90.0_1.90.0-6.1+b1_amd64.deb ... Unpacking libboost-thread1.90.0:amd64 (1.90.0-6.1+b1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../libgomp1_16.2.0-3_amd64.deb ... Unpacking libgomp1:amd64 (16.2.0-3) ... Selecting previously unselected package mira-assembler. Preparing to unpack .../mira-assembler_4.9.6-12+b1_amd64.deb ... Unpacking mira-assembler (4.9.6-12+b1) ... Setting up libexpat1:amd64 (2.8.4-2) ... Setting up libgomp1:amd64 (16.2.0-3) ... Setting up libboost-thread1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libboost-filesystem1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up mira-assembler (4.9.6-12+b1) ... Processing triggers for libc-bin (2.43-6) ... 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', '-y', 'install', 'mira-assembler'] 0m9.3s INFO: Running scripts post_install 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_install_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_install_exceptions'] 0m9.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m9.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m9.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpg9k196em to sid 0m9.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m9.7s INFO: Running scripts pre_distupgrade 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', 'update'] 0m17.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7731 kB] Fetched 18.7 MB in 7s (2832 kB/s) Reading package lists... 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', 'update'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', '-yf', 'dist-upgrade'] 0m20.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libboost-filesystem1.90.0 libboost-thread1.90.0 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libboost-filesystem1.92.0 libboost-thread1.92.0 The following packages will be upgraded: findutils libaudit-common libaudit1 libc-bin libc-gconv-modules-extra libc6 libexpat1 libpcre2-8-0 libssl3t64 login.defs mira-assembler openssl-provider-legacy passwd 13 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 12.7 MB of archives. After this operation, 4815 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.11.0-3 [788 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.43-7 [621 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.9.0-1 [133 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.48-3.1 [312 kB] Get:9 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.6.5-1 [329 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.6.5-1 [2621 kB] Get:11 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.20.3-1 [224 kB] Get:12 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.20.3-1 [1298 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libboost-filesystem1.92.0 amd64 1.92.0-3 [293 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libboost-thread1.92.0 amd64 1.92.0-3 [261 kB] Get:15 http://deb.debian.org/debian sid/main amd64 mira-assembler amd64 4.9.6-12+b2 [2800 kB] Preconfiguring packages ... Fetched 12.7 MB in 0s (84.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5015 files and directories currently installed.) Preparing to unpack .../findutils_4.11.0-3_amd64.deb ... Unpacking findutils (4.11.0-3) over (4.11.0-2) ... Setting up findutils (4.11.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5015 files and directories currently installed.) Preparing to unpack .../libc-gconv-modules-extra_2.43-7_amd64.deb ... Unpacking libc-gconv-modules-extra:amd64 (2.43-7) over (2.43-6) ... Setting up libc-gconv-modules-extra:amd64 (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5015 files and directories currently installed.) Preparing to unpack .../libc6_2.43-7_amd64.deb ... Unpacking libc6:amd64 (2.43-7) over (2.43-6) ... Setting up libc6:amd64 (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5015 files and directories currently installed.) Preparing to unpack .../libc-bin_2.43-7_amd64.deb ... Unpacking libc-bin (2.43-7) over (2.43-6) ... Setting up libc-bin (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5015 files and directories currently installed.) Preparing to unpack .../libexpat1_2.9.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.9.0-1) over (2.8.4-2) ... Preparing to unpack .../libaudit-common_1%3a4.2.1-1_all.deb ... Unpacking libaudit-common (1:4.2.1-1) over (1:4.1.2-1) ... Setting up libaudit-common (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5015 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.2.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.2.1-1) over (1:4.1.2-1+b2) ... Setting up libaudit1:amd64 (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5014 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.48-3.1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.48-3.1) over (10.48-3) ... Setting up libpcre2-8-0:amd64 (10.48-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5014 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.6.5-1_amd64.deb ... Unpacking openssl-provider-legacy (3.6.5-1) over (3.6.4-1) ... Setting up openssl-provider-legacy (3.6.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5014 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.6.5-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.6.5-1) over (3.6.4-1) ... Setting up libssl3t64:amd64 (3.6.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5014 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.20.3-1_all.deb ... Unpacking login.defs (1:4.20.3-1) over (1:4.20.2-2) ... Preparing to unpack .../passwd_1%3a4.20.3-1_amd64.deb ... Unpacking passwd (1:4.20.3-1) over (1:4.20.2-2) ... Selecting previously unselected package libboost-filesystem1.92.0:amd64. Preparing to unpack .../libboost-filesystem1.92.0_1.92.0-3_amd64.deb ... Unpacking libboost-filesystem1.92.0:amd64 (1.92.0-3) ... Selecting previously unselected package libboost-thread1.92.0:amd64. Preparing to unpack .../libboost-thread1.92.0_1.92.0-3_amd64.deb ... Unpacking libboost-thread1.92.0:amd64 (1.92.0-3) ... Preparing to unpack .../mira-assembler_4.9.6-12+b2_amd64.deb ... Unpacking mira-assembler (4.9.6-12+b2) over (4.9.6-12+b1) ... Setting up libexpat1:amd64 (2.9.0-1) ... Setting up login.defs (1:4.20.3-1) ... Setting up passwd (1:4.20.3-1) ... Setting up libboost-filesystem1.92.0:amd64 (1.92.0-3) ... Setting up libboost-thread1.92.0:amd64 (1.92.0-3) ... Setting up mira-assembler (4.9.6-12+b2) ... Processing triggers for libselinux1:amd64 (3.11-2.1) ... Processing triggers for libc-bin (2.43-7) ... 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', '-yf', 'dist-upgrade'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.1s DUMP: af815de184026a9e771305ca48702cc0 - 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'show', '--no-all-versions', 'mira-assembler'] 0m21.5s DUMP: Package: mira-assembler Source: mira (4.9.6-12) Version: 4.9.6-12+b2 Installed-Size: 8627 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-filesystem1.92.0 (>= 1.92.0), libboost-thread1.92.0 (>= 1.92.0), libc6 (>= 2.38), libexpat1 (>= 2.0.1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 14), zlib1g (>= 1:1.2.6) Recommends: mira-rfam-12s-rrna Suggests: mira-doc Description-en: Whole Genome Shotgun and EST Sequence Assembler The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof. . The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments. . The package provides the following executables: Binaries provided: * mira: for assembly of genome sequences * miramem: estimating memory needed to assemble projects. * mirabait: a "grep" like tool to select reads with kmers up to 256 bases. * miraconvert: is a tool to convert, extract and sometimes recalculate all kinds of data related to sequence assembly files. Description-md5: a8c6d1905e05378eb5c622bc2c3fc577 Homepage: https://sourceforge.net/p/mira-assembler/wiki/Home/ Tag: role::program Section: science Priority: optional Filename: pool/main/m/mira/mira-assembler_4.9.6-12+b2_amd64.deb Size: 2800272 MD5sum: 95ed839ddd1866dd9a871fb80ba11bc6 SHA256: 0bdb40738b35a13c06d14338ab94313b73cdca081a24d9c76047b885dac7c909 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'show', '--no-all-versions', 'mira-assembler'] 0m21.5s INFO: apt-cache knows about the following packages: mira-assembler 0m21.5s INFO: Running scripts pre_install 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_database-server'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_database-server'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_exceptions'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_exceptions'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_extras'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_extras'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy'] 0m21.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy', 'mira-assembler'] 0m21.6s DUMP: mira-assembler: Installed: 4.9.6-12+b2 Candidate: 4.9.6-12+b2 Version table: *** 4.9.6-12+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy', 'mira-assembler'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', '-y', 'install', 'mira-assembler'] 0m22.2s DUMP: Reading package lists... Building dependency tree... Reading state information... mira-assembler is already the newest version (4.9.6-12+b2). Solving dependencies... The following packages were automatically installed and are no longer required: libboost-filesystem1.90.0 libboost-thread1.90.0 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', '-y', 'install', 'mira-assembler'] 0m22.2s INFO: Running scripts post_install 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_install_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_install_exceptions'] 0m22.2s INFO: Running scripts post_distupgrade 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m22.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m22.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m22.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m22.9s INFO: Running scripts pre_install 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_database-server'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_database-server'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_exceptions'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_exceptions'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_extras'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_extras'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy'] 0m23.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy', 'mira-assembler'] 0m23.0s DUMP: mira-assembler: Installed: 4.9.6-12+b2 Candidate: 4.9.6-12+b2 Version table: *** 4.9.6-12+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-cache', 'policy', 'mira-assembler'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', '-y', 'install', 'mira-assembler=4.9.6-12+b2'] 0m24.1s DUMP: Reading package lists... Building dependency tree... Reading state information... mira-assembler is already the newest version (4.9.6-12+b2). Solving dependencies... The following packages were automatically installed and are no longer required: libboost-filesystem1.90.0 libboost-thread1.90.0 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', '-y', 'install', 'mira-assembler=4.9.6-12+b2'] 0m24.1s INFO: Running scripts post_install 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_install_exceptions'] 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_install_exceptions'] 0m24.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m24.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m24.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg9k196em', '-ac', '--ignore-obsolete'] 0m25.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg9k196em', '-ac', '--ignore-obsolete'] 0m25.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.3s DUMP: 0.17.5+b5 0m25.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.3s INFO: Running adequate version 0.17.5+b5 now. 0m25.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'mira-assembler'] 0m25.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'mira-assembler'] 0m25.4s INFO: Running scripts pre_remove 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_exceptions'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/pre_remove_exceptions'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.9s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libboost-filesystem1.90.0:amd64 libboost-filesystem1.90.0 1.90.0-6.1+b1 install ok installed libboost-filesystem1.92.0:amd64 libboost-filesystem1.92.0 1.92.0-3 install ok installed libboost-thread1.90.0:amd64 libboost-thread1.90.0 1.90.0-6.1+b1 install ok installed libboost-thread1.92.0:amd64 libboost-thread1.92.0 1.92.0-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libexpat1:amd64 libexpat1 2.9.0-1 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgomp1:amd64 libgomp1 16.2.0-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mira-assembler mira-assembler 4.9.6-12+b2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', 'remove', '--allow-remove-essential', 'libboost-filesystem1.90.0:amd64', 'libboost-filesystem1.92.0:amd64', 'libboost-thread1.90.0:amd64', 'libboost-thread1.92.0:amd64', 'libexpat1:amd64', 'libgomp1:amd64', 'mira-assembler'] 0m27.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: libboost-filesystem1.90.0 libboost-filesystem1.92.0 libboost-thread1.90.0 libboost-thread1.92.0 libexpat1 libgomp1 mira-assembler 0 upgraded, 0 newly installed, 7 to remove and 0 not upgraded. After this operation, 18.9 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5022 files and directories currently installed.) Removing libboost-filesystem1.90.0:amd64 (1.90.0-6.1+b1) ... Removing mira-assembler (4.9.6-12+b2) ... Removing libboost-filesystem1.92.0:amd64 (1.92.0-3) ... Removing libboost-thread1.90.0:amd64 (1.90.0-6.1+b1) ... Removing libboost-thread1.92.0:amd64 (1.92.0-3) ... Removing libexpat1:amd64 (2.9.0-1) ... Removing libgomp1:amd64 (16.2.0-3) ... Processing triggers for libc-bin (2.43-7) ... 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', 'remove', '--allow-remove-essential', 'libboost-filesystem1.90.0:amd64', 'libboost-filesystem1.92.0:amd64', 'libboost-thread1.90.0:amd64', 'libboost-thread1.92.0:amd64', 'libexpat1:amd64', 'libgomp1:amd64', 'mira-assembler'] 0m27.1s INFO: Running scripts post_remove 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_remove_exceptions'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_remove_exceptions'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg', '--purge', 'libboost-filesystem1.90.0:amd64', 'libboost-filesystem1.92.0:amd64', 'libboost-thread1.90.0:amd64', 'libboost-thread1.92.0:amd64', 'libexpat1:amd64', 'libgomp1:amd64'] 0m27.1s DUMP: dpkg: warning: ignoring request to remove libboost-filesystem1.90.0 which is not installed dpkg: warning: ignoring request to remove libboost-filesystem1.92.0 which is not installed dpkg: warning: ignoring request to remove libboost-thread1.90.0 which is not installed dpkg: warning: ignoring request to remove libboost-thread1.92.0 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg', '--purge', 'libboost-filesystem1.90.0:amd64', 'libboost-filesystem1.92.0:amd64', 'libboost-thread1.90.0:amd64', 'libboost-thread1.92.0:amd64', 'libexpat1:amd64', 'libgomp1:amd64'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg', '--purge', 'mira-assembler'] 0m27.1s DUMP: dpkg: warning: ignoring request to remove mira-assembler which is not installed 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg', '--purge', 'mira-assembler'] 0m27.1s INFO: Running scripts post_purge 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_purge_exceptions'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_purge_exceptions'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg', '--purge', '--pending'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg', '--purge', '--pending'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg', '--remove', '--pending'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg', '--remove', '--pending'] 0m27.1s INFO: Running scripts post_test 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_test_exceptions'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'tmp/scripts/post_test_exceptions'] 0m27.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m27.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg-divert', '--list'] 0m27.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'dpkg-divert', '--list'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', 'clean'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg9k196em', 'apt-get', 'clean'] 0m27.5s DEBUG: Recording chroot state 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/shm'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/shm'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/console'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/console'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/ptmx'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/ptmx'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/pts'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg9k196em/dev/pts'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg9k196em/proc'] 0m28.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg9k196em/proc'] 0m28.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m28.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg9k196em'] 0m28.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpg9k196em 0m28.7s INFO: PASS: Upgrading between Debian distributions. 0m28.7s INFO: PASS: All tests. 0m28.7s INFO: piuparts run ends. ret=0 End: 2026-10-08 10:06:28 GMT