Start: 2022-11-24 15:34:25 GMT [testing] Package: nanolyse Version: 1.2.0-3 Installed-Size: 66 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-biopython, python3-mappy, python3:any Description: remove lambda phage reads from a fastq file Homepage: https://github.com/wdecoster/nanolyse Description-md5: cd14401b354eac752407c17a551a5108 Section: science Priority: optional Filename: pool/main/n/nanolyse/nanolyse_1.2.0-3_amd64.deb Size: 25332 MD5sum: bbb1619c1361284e9160841721811c45 SHA256: d05ab75800b2eb2c3aa78fbfb1fc8bd9e6b408e9599f4e930a1c033812ba06b5 [sid] Package: nanolyse Version: 1.2.0-4 Installed-Size: 66 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-biopython, python3-mappy, python3:any Description: remove lambda phage reads from a fastq file Homepage: https://github.com/wdecoster/nanolyse Description-md5: cd14401b354eac752407c17a551a5108 Section: science Priority: optional Filename: pool/main/n/nanolyse/nanolyse_1.2.0-4_amd64.deb Size: 25332 MD5sum: 9a70a4187c476cc83e114cab4914cb91 SHA256: 2fdc8dcbfc74be4b53bb4b106803881fac0531ec7f94ddf525e3dd05b2259596 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt nanolyse=1.2.0-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt nanolyse=1.2.0-4 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpjhrrn5wh 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpjhrrn5wh 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpjhrrn5wh/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', 'update'] 0m4.5s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [164 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8757 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5916 kB] Fetched 14.8 MB in 2s (7337 kB/s) Reading package lists... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', 'update'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', '-yf', 'dist-upgrade'] 0m6.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 mount util-linux util-linux-extra 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1961 kB of archives. After this operation, 2048 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-3 [93.9 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-3 [106 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-3 [110 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-3 [1177 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-3 [134 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-3 [147 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-3 [165 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.38.1-3 [28.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1961 kB in 0s (29.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8605 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-3_amd64.deb ... Unpacking bsdutils (1:2.38.1-3) over (1:2.38.1-1.1+b1) ... Setting up bsdutils (1:2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8604 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-3_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libsmartcols1:amd64 (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8603 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-3_amd64.deb ... Unpacking util-linux-extra (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up util-linux-extra (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8602 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-3_amd64.deb ... Unpacking util-linux (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up util-linux (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8600 files and directories currently installed.) Preparing to unpack .../mount_2.38.1-3_amd64.deb ... Unpacking mount (2.38.1-3) over (2.38.1-1.1+b1) ... Preparing to unpack .../libblkid1_2.38.1-3_amd64.deb ... Unpacking libblkid1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libblkid1:amd64 (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8597 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-3_amd64.deb ... Unpacking libmount1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libmount1:amd64 (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8596 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38.1-3_amd64.deb ... Unpacking libuuid1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libuuid1:amd64 (2.38.1-3) ... Setting up mount (2.38.1-3) ... Processing triggers for libc-bin (2.36-5) ... 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', '-yf', 'dist-upgrade'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.5s DUMP: 2642f542fd006d933807dc77c9c70658 - 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.5s INFO: Running scripts post_setup 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_dummy_users'] 0m7.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_dummy_users'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_forbid_home'] 0m7.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_forbid_home'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-3 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9+b1 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblkid1:amd64 libblkid1 2.38.1-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-5 install ok installed libc6:amd64 libc6 2.36-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.264 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.7-0.1 install ok installed libmount1:amd64 libmount1 2.38.1-3 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-3 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 252.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 252.1-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-3 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-3 install ok installed util-linux-extra util-linux-extra 2.38.1-3 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 0m8.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 0m8.0s INFO: Running scripts is_testable 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s INFO: Running scripts pre_test 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_test_root_password'] 0m8.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_test_root_password'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'show', '--no-all-versions', 'nanolyse'] 0m8.2s DUMP: Package: nanolyse Version: 1.2.0-3 Installed-Size: 66 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-biopython, python3-mappy, python3:any Description-en: remove lambda phage reads from a fastq file NanoLyse is a tool for rapid removal of contaminant DNA, using the Minimap2 aligner through the mappy Python binding. A typical application would be the removal of the lambda phage control DNA fragment supplied by ONT, for which the reference sequence is included in the package. However, this approach may lead to unwanted loss of reads from regions highly homologous to the lambda phage genome. Description-md5: cd14401b354eac752407c17a551a5108 Homepage: https://github.com/wdecoster/nanolyse Section: science Priority: optional Filename: pool/main/n/nanolyse/nanolyse_1.2.0-3_amd64.deb Size: 25332 MD5sum: bbb1619c1361284e9160841721811c45 SHA256: d05ab75800b2eb2c3aa78fbfb1fc8bd9e6b408e9599f4e930a1c033812ba06b5 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'show', '--no-all-versions', 'nanolyse'] 0m8.2s INFO: apt-cache knows about the following packages: nanolyse 0m8.2s INFO: Running scripts pre_install 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_exceptions'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_extras'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_extras'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy'] 0m8.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy', 'nanolyse'] 0m8.4s DUMP: nanolyse: Installed: (none) Candidate: 1.2.0-3 Version table: 1.2.0-3 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy', 'nanolyse'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', '-y', 'install', 'nanolyse'] 0m48.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: fonts-urw-base35 libblas3 libbrotli1 libbsd0 libdeflate0 libexpat1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 liblerc4 libmd0 libmpdec3 libncursesw6 libnsl2 libopenjp2-7 libpng16-16 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libtiff5 libtirpc-common libtirpc3 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support python3 python3-biopython python3-mappy python3-minimal python3-numpy python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3.10 python3.10-minimal python3.11 python3.11-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre low-memory-monitor krb5-doc krb5-user liblcms2-utils python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc python3-setuptools pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3.10-venv python3.10-doc binutils binfmt-support python3.11-venv python3.11-doc readline-doc sgml-base-doc debhelper Recommended packages: libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 bzip2 file xz-utils python-biopython-doc ncbi-blast+ python3-olefile The following NEW packages will be installed: fonts-urw-base35 libblas3 libbrotli1 libbsd0 libdeflate0 libexpat1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 liblerc4 libmd0 libmpdec3 libncursesw6 libnsl2 libopenjp2-7 libpng16-16 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libtiff5 libtirpc-common libtirpc3 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support nanolyse python3 python3-biopython python3-mappy python3-minimal python3-numpy python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3.10 python3.10-minimal python3.11 python3.11-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 38.7 MB of archives. After this operation, 141 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.7-1 [2008 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-minimal amd64 3.10.8-3 [784 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.10-minimal amd64 3.10.8-3 [1951 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.10.6-1 [38.7 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 8.0.0 [33.4 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-1 [32.2 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-1 [78.6 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-1 [331 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-1 [134 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.1 [68.4 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.1 [165 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.0-1 [838 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-stdlib amd64 3.10.8-3 [1685 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 python3.10 amd64 3.10.8-3 [506 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.10.6-1 [21.7 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.10.6-1 [38.2 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.0-3 [812 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.0-3 [2064 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b5 [279 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.38-2 [290 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [420 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.1 [573 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-6 [6374 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.10.1-2 [156 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-1 [117 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-9 [145 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-9 [792 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.1-2 [1393 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-9 [116 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 5.2.0-2+b1 [1886 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.2-1+b1 [169 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.10.1-2 [2202 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.13.1-1+b1 [153 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1 [189 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.0-3 [1712 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4 [11.0 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.2-2+b2 [280 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libtiff5 amd64 4.4.0-5+b1 [302 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.2-2+b2 [96.3 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.2-2+b2 [106 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 65.5.0-1 [278 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.0-3 [559 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.21.5-2 [3845 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.11-1+b1 [79.6 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.11-1+b1 [40.6 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.2.0-1.1+b1 [468 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.11-1 [566 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.79+dfsg-3+b1 [1425 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 python3-mappy amd64 2.24+dfsg-2+b2 [160 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 nanolyse amd64 1.2.0-3 [25.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.7 MB in 0s (125 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8596 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.7-1_amd64.deb ... Unpacking libssl3:amd64 (3.0.7-1) ... Selecting previously unselected package libpython3.10-minimal:amd64. Preparing to unpack .../libpython3.10-minimal_3.10.8-3_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.8-3_amd64.deb ... Unpacking python3.10-minimal (3.10.8-3) ... Setting up libssl3:amd64 (3.0.7-1) ... Setting up libpython3.10-minimal:amd64 (3.10.8-3) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.10-minimal (3.10.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8913 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.10.6-1_amd64.deb ... Unpacking python3-minimal (3.10.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... 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Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../09-libkrb5-3_1.20.1-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../10-libgssapi-krb5-2_1.20.1-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../12-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../13-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-1.1_all.deb ... Unpacking readline-common (8.2-1.1) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9436 files and directories currently installed.) Preparing to unpack .../00-python3_3.10.6-1_amd64.deb ... Unpacking python3 (3.10.6-1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../01-libpython3.11-minimal_3.11.0-3_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.0-3) ... Selecting previously unselected package python3.11-minimal. 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Unpacking python3-reportlab-accel:amd64 (3.6.11-1+b1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../44-python3-pil_9.2.0-1.1+b1_amd64.deb ... Unpacking python3-pil:amd64 (9.2.0-1.1+b1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../45-python3-reportlab_3.6.11-1_all.deb ... Unpacking python3-reportlab (3.6.11-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../46-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../48-python3-biopython_1.79+dfsg-3+b1_amd64.deb ... Unpacking python3-biopython (1.79+dfsg-3+b1) ... Selecting previously unselected package python3-mappy. Preparing to unpack .../49-python3-mappy_2.24+dfsg-2+b2_amd64.deb ... Unpacking python3-mappy (2.24+dfsg-2+b2) ... Selecting previously unselected package nanolyse. Preparing to unpack .../50-nanolyse_1.2.0-3_amd64.deb ... Unpacking nanolyse (1.2.0-3) ... Setting up media-types (8.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.13.1-1+b1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up libglib2.0-0:amd64 (2.74.1-2) ... No schema files found: doing nothing. Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b5) ... Setting up libsqlite3-0:amd64 (3.40.0-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.14-1) ... Setting up libgomp1:amd64 (12.2.0-9) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libkrb5support0:amd64 (1.20.1-1) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up libblas3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Setting up xfonts-encodings (1:1.0.4-2.1) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-9) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.38-2) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libk5crypto3:amd64 (1.20.1-1) ... Setting up libgfortran5:amd64 (12.2.0-9) ... Setting up libwebp7:amd64 (1.2.2-2+b2) ... Setting up libmd0:amd64 (1.0.4-2) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libopenjp2-7:amd64 (2.5.0-1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-1) ... Setting up libtiff5:amd64 (4.4.0-5+b1) ... Setting up libpython3.11-minimal:amd64 (3.11.0-3) ... Setting up libwebpmux3:amd64 (1.2.2-2+b2) ... Setting up libbsd0:amd64 (0.11.7-1) ... Setting up mailcap (3.70+nmu1) ... Setting up readline-common (8.2-1.1) ... Setting up python3.11-minimal (3.11.0-3) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up mime-support (3.66) ... Setting up libwebpdemux2:amd64 (1.2.2-2+b2) ... Setting up libreadline8:amd64 (8.2-1.1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-1) ... Setting up xml-core (0.18+nmu1) ... Setting up libharfbuzz0b:amd64 (5.2.0-2+b1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libraqm0:amd64 (0.7.0-4) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.0-3) ... Setting up fonts-urw-base35 (20200910-6) ... Setting up libpython3.10-stdlib:amd64 (3.10.8-3) ... Setting up libpython3-stdlib:amd64 (3.10.6-1) ... Setting up python3.11 (3.11.0-3) ... Setting up python3.10 (3.10.8-3) ... Setting up python3 (3.10.6-1) ... Setting up python3-pil:amd64 (9.2.0-1.1+b1) ... Setting up python3-reportlab-accel:amd64 (3.6.11-1+b1) ... Setting up python3-reportlab (3.6.11-1) ... Setting up python3-pkg-resources (65.5.0-1) ... Setting up python3-renderpm:amd64 (3.6.11-1+b1) ... Setting up python3-mappy (2.24+dfsg-2+b2) ... Setting up python3-numpy (1:1.21.5-2) ... Processing triggers for libc-bin (2.36-5) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.79+dfsg-3+b1) ... Setting up nanolyse (1.2.0-3) ... 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', '-y', 'install', 'nanolyse'] 0m48.5s INFO: Running scripts post_install 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_install_exceptions'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_install_exceptions'] 0m48.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 0m49.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 0m49.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpjhrrn5wh to sid 0m49.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m49.1s INFO: Running scripts pre_distupgrade 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_distupgrade_exceptions'] 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_distupgrade_exceptions'] 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', 'update'] 0m52.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9399 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6946 kB] Fetched 16.5 MB in 2s (6929 kB/s) Reading package lists... 0m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', 'update'] 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', '-yf', 'dist-upgrade'] 0m54.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libdebconfclient0 libgcrypt20 libjbig0 liblzma5 libpython3-stdlib libreadline8 nanolyse python3 python3-minimal readline-common tar zlib1g 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2163 kB of archives. After this operation, 94.2 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.1 [836 kB] Get:2 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.10.6-3 [25.5 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.10.6-3 [25.2 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.10.6-3 [8588 B] Get:5 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.265 [7720 B] Get:6 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.1-3 [696 kB] Get:7 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.2.8-0.0 [186 kB] Get:8 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-1.2 [68.5 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6 [31.6 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-1.2 [165 kB] Get:12 http://deb.debian.org/debian sid/main amd64 nanolyse amd64 1.2.0-4 [25.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2163 kB in 0s (30.8 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13000 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.10.6-3_amd64.deb ... Unpacking python3-minimal (3.10.6-3) over (3.10.6-1) ... Setting up python3-minimal (3.10.6-3) ... (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13000 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.1-3_amd64.deb ... Unpacking libgcrypt20:amd64 (1.10.1-3) over (1.10.1-2) ... Setting up libgcrypt20:amd64 (1.10.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13000 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.8-0.0_amd64.deb ... Unpacking liblzma5:amd64 (5.2.8-0.0) over (5.2.7-0.1) ... Setting up liblzma5:amd64 (5.2.8-0.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13000 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.13.dfsg-1) over (1:1.2.11.dfsg-4.1) ... Setting up zlib1g:amd64 (1:1.2.13.dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13000 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-1.2_all.deb ... Unpacking readline-common (8.2-1.2) over (8.2-1.1) ... Preparing to unpack .../libjbig0_2.1-6_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6) over (2.1-3.1+b2) ... Preparing to unpack .../libreadline8_8.2-1.2_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.2) over (8.2-1.1) ... Preparing to unpack .../nanolyse_1.2.0-4_amd64.deb ... Unpacking nanolyse (1.2.0-4) over (1.2.0-3) ... Setting up libjbig0:amd64 (2.1-6) ... Setting up readline-common (8.2-1.2) ... Setting up libpython3-stdlib:amd64 (3.10.6-3) ... Setting up libreadline8:amd64 (8.2-1.2) ... Setting up python3 (3.10.6-3) ... Setting up nanolyse (1.2.0-4) ... Processing triggers for libc-bin (2.36-5) ... Processing triggers for mailcap (3.70+nmu1) ... 0m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', '-yf', 'dist-upgrade'] 0m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m54.8s DUMP: c2c7ddfe0194791c75a28c32d94db500 - 0m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'show', '--no-all-versions', 'nanolyse'] 0m55.0s DUMP: Package: nanolyse Version: 1.2.0-4 Installed-Size: 66 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-biopython, python3-mappy, python3:any Description-en: remove lambda phage reads from a fastq file NanoLyse is a tool for rapid removal of contaminant DNA, using the Minimap2 aligner through the mappy Python binding. A typical application would be the removal of the lambda phage control DNA fragment supplied by ONT, for which the reference sequence is included in the package. However, this approach may lead to unwanted loss of reads from regions highly homologous to the lambda phage genome. Description-md5: cd14401b354eac752407c17a551a5108 Homepage: https://github.com/wdecoster/nanolyse Section: science Priority: optional Filename: pool/main/n/nanolyse/nanolyse_1.2.0-4_amd64.deb Size: 25332 MD5sum: 9a70a4187c476cc83e114cab4914cb91 SHA256: 2fdc8dcbfc74be4b53bb4b106803881fac0531ec7f94ddf525e3dd05b2259596 0m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'show', '--no-all-versions', 'nanolyse'] 0m55.0s INFO: apt-cache knows about the following packages: nanolyse 0m55.0s INFO: Running scripts pre_install 0m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_database-server'] 0m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_database-server'] 0m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_exceptions'] 0m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_exceptions'] 0m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_extras'] 0m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_extras'] 0m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture'] 0m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture'] 0m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy'] 0m55.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m55.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy'] 0m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy', 'nanolyse'] 0m55.2s DUMP: nanolyse: Installed: 1.2.0-4 Candidate: 1.2.0-4 Version table: *** 1.2.0-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy', 'nanolyse'] 0m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', '-y', 'install', 'nanolyse'] 0m55.5s DUMP: Reading package lists... Building dependency tree... Reading state information... nanolyse is already the newest version (1.2.0-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m55.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', '-y', 'install', 'nanolyse'] 0m55.5s INFO: Running scripts post_install 0m55.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_install_exceptions'] 0m55.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_install_exceptions'] 0m55.5s INFO: Running scripts post_distupgrade 0m55.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_distupgrade_exceptions'] 0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_distupgrade_exceptions'] 0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_distupgrade_zz_backports'] 0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_distupgrade_zz_backports'] 0m55.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 0m56.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 0m56.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 0m56.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 0m56.9s INFO: Running scripts pre_install 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_database-server'] 0m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_database-server'] 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_exceptions'] 0m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_exceptions'] 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_extras'] 0m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_extras'] 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture'] 0m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture'] 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy'] 0m57.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy'] 0m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy', 'nanolyse'] 0m57.0s DUMP: nanolyse: Installed: 1.2.0-4 Candidate: 1.2.0-4 Version table: *** 1.2.0-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-cache', 'policy', 'nanolyse'] 0m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', '-y', 'install', 'nanolyse=1.2.0-4'] 0m57.4s DUMP: Reading package lists... Building dependency tree... Reading state information... nanolyse is already the newest version (1.2.0-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', '-y', 'install', 'nanolyse=1.2.0-4'] 0m57.4s INFO: Running scripts post_install 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_install_exceptions'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_install_exceptions'] 0m57.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 0m58.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 0m58.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', '-ac', '--ignore-obsolete'] 1m0.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', '-ac', '--ignore-obsolete'] 1m0.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m0.0s DUMP: 0.15.6 1m0.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m0.0s INFO: Running adequate version 0.15.6 now. 1m0.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'nanolyse'] 1m0.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'nanolyse'] 1m0.1s INFO: Running scripts pre_remove 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_exceptions'] 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/pre_remove_exceptions'] 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m1.7s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-3 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9+b1 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-6 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblas3:amd64 libblas3 3.10.1-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-3 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b5 install ok installed libbsd0:amd64 libbsd0 0.11.7-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-5 install ok installed libc6:amd64 libc6 2.36-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-9 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgomp1:amd64 libgomp1 12.2.0-9 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 5.2.0-2+b1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-6 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.2-1+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-1 install ok installed liblapack3:amd64 liblapack3 3.10.1-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.13.1-1+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.8-0.0 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-3 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libncursesw6:amd64 libncursesw6 6.3+20220423-2 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libpng16-16:amd64 libpng16-16 1.6.38-2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.10.6-3 install ok installed libpython3.10-minimal:amd64 libpython3.10-minimal 3.10.8-3 install ok installed libpython3.10-stdlib:amd64 libpython3.10-stdlib 3.10.8-3 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.0-3 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.0-3 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-9 install ok installed libraqm0:amd64 libraqm0 0.7.0-4 install ok installed libreadline8:amd64 libreadline8 8.2-1.2 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.0-1 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libssl3:amd64 libssl3 3.0.7-1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 252.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtiff5:amd64 libtiff5 4.4.0-5+b1 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libudev1:amd64 libudev1 252.1-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-3 install ok installed libwebp7:amd64 libwebp7 1.2.2-2+b2 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.2.2-2+b2 install ok installed libwebpmux3:amd64 libwebpmux3 1.2.2-2+b2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mailcap mailcap 3.70+nmu1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 8.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.38.1-3 install ok installed nanolyse nanolyse 1.2.0-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed python3 python3 3.10.6-3 install ok installed python3-biopython python3-biopython 1.79+dfsg-3+b1 install ok installed python3-mappy python3-mappy 2.24+dfsg-2+b2 install ok installed python3-minimal python3-minimal 3.10.6-3 install ok installed python3-numpy python3-numpy 1:1.21.5-2 install ok installed python3-pil:amd64 python3-pil 9.2.0-1.1+b1 install ok installed python3-pkg-resources python3-pkg-resources 65.5.0-1 install ok installed python3-renderpm:amd64 python3-renderpm 3.6.11-1+b1 install ok installed python3-reportlab python3-reportlab 3.6.11-1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.6.11-1+b1 install ok installed python3.10 python3.10 3.10.8-3 install ok installed python3.10-minimal python3.10-minimal 3.10.8-3 install ok installed python3.11 python3.11 3.11.0-3 install ok installed python3.11-minimal python3.11-minimal 3.11.0-3 install ok installed readline-common readline-common 8.2-1.2 install ok installed sed sed 4.8-1 install ok installed sgml-base sgml-base 1.31 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1.1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-3 install ok installed util-linux-extra util-linux-extra 2.38.1-3 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.1 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', 'remove', 'fonts-urw-base35', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'mailcap', 'media-types', 'mime-support', 'python3', 'python3-biopython', 'python3-mappy', 'python3-minimal', 'python3-numpy', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.10', 'python3.10-minimal', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'nanolyse'] 1m37.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: fonts-urw-base35 libblas3 libbrotli1 libbsd0 libdeflate0 libexpat1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 liblerc4 libmd0 libmpdec3 libncursesw6 libnsl2 libopenjp2-7 libpng16-16 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libtiff5 libtirpc-common libtirpc3 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support nanolyse python3 python3-biopython python3-mappy python3-minimal python3-numpy python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3.10 python3.10-minimal python3.11 python3.11-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 0 newly installed, 75 to remove and 0 not upgraded. After this operation, 141 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12999 files and directories currently installed.) Removing nanolyse (1.2.0-4) ... Removing python3-biopython (1.79+dfsg-3+b1) ... Removing python3-renderpm:amd64 (3.6.11-1+b1) ... Removing fonts-urw-base35 (20200910-6) ... Removing python3-numpy (1:1.21.5-2) ... Removing liblapack3:amd64 (3.10.1-2) ... Removing libblas3:amd64 (3.10.1-2) ... Removing xfonts-utils (1:7.7+6) ... Removing python3-reportlab (3.6.11-1) ... Removing python3-pil:amd64 (9.2.0-1.1+b1) ... Removing libraqm0:amd64 (0.7.0-4) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-1) ... Removing libtiff5:amd64 (4.4.0-5+b1) ... Removing libdeflate0:amd64 (1.14-1) ... Removing python3.11 (3.11.0-3) ... Removing python3.11-minimal (3.11.0-3) ... Removing python3-reportlab-accel:amd64 (3.6.11-1+b1) ... Removing python3-pkg-resources (65.5.0-1) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing libgfortran5:amd64 (12.2.0-9) ... Removing libharfbuzz0b:amd64 (5.2.0-2+b1) ... Removing libglib2.0-0:amd64 (2.74.1-2) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libgomp1:amd64 (12.2.0-9) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libpython3.11-stdlib:amd64 (3.11.0-3) ... Removing libjbig0:amd64 (2.1-6) ... Removing libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Removing liblcms2-2:amd64 (2.13.1-1+b1) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing libmd0:amd64 (1.0.4-2) ... Removing libopenjp2-7:amd64 (2.5.0-1) ... Removing libpython3.11-minimal:amd64 (3.11.0-3) ... Removing libquadmath0:amd64 (12.2.0-9) ... Removing libwebpmux3:amd64 (1.2.2-2+b2) ... Removing libwebpdemux2:amd64 (1.2.2-2+b2) ... Removing libwebp7:amd64 (1.2.2-2+b2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing mime-support (3.66) ... Removing mailcap (3.70+nmu1) ... Removing python3-mappy (2.24+dfsg-2+b2) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.1) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libfreetype6:amd64 (2.12.1+dfsg-3) ... Removing libbrotli1:amd64 (1.0.9-2+b5) ... Removing python3 (3.10.6-3) ... Removing python3.10 (3.10.8-3) ... Removing libpython3-stdlib:amd64 (3.10.6-3) ... Removing libpython3.10-stdlib:amd64 (3.10.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncursesw6:amd64 (6.3+20220423-2) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libpng16-16:amd64 (1.6.38-2) ... Removing python3-minimal (3.10.6-3) ... Removing libreadline8:amd64 (8.2-1.2) ... Removing libsqlite3-0:amd64 (3.40.0-1) ... Removing media-types (8.0.0) ... Removing readline-common (8.2-1.2) ... Removing python3.10-minimal (3.10.8-3) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-1) ... Removing libkrb5-3:amd64 (1.20.1-1) ... Removing libk5crypto3:amd64 (1.20.1-1) ... Removing libkeyutils1:amd64 (1.6.3-1) ... Removing libkrb5support0:amd64 (1.20.1-1) ... Removing libpython3.10-minimal:amd64 (3.10.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libssl3:amd64 (3.0.7-1) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for libc-bin (2.36-5) ... 1m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', 'remove', 'fonts-urw-base35', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'mailcap', 'media-types', 'mime-support', 'python3', 'python3-biopython', 'python3-mappy', 'python3-minimal', 'python3-numpy', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.10', 'python3.10-minimal', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'nanolyse'] 1m37.5s INFO: Running scripts post_remove 1m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_remove_exceptions'] 1m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_remove_exceptions'] 1m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg', '--purge', 'fonts-urw-base35', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'mailcap', 'media-types', 'mime-support', 'python3', 'python3-biopython', 'python3-mappy', 'python3-minimal', 'python3-numpy', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.10', 'python3.10-minimal', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 1m37.7s DUMP: (Reading database ... 8635 files and directories currently installed.) Purging configuration files for fonts-urw-base35 (20200910-6) ... dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.1-2) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.10-minimal:amd64 (3.10.8-3) ... dpkg: warning: ignoring request to remove libpython3.10-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.0-3) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... Purging configuration files for media-types (8.0.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for python3 (3.10.6-3) ... dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-mappy which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3.10 which isn't installed Purging configuration files for python3.10-minimal (3.10.8-3) ... dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.0-3) ... Purging configuration files for readline-common (8.2-1.2) ... Purging configuration files for sgml-base (1.31) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.18+nmu1) ... 1m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg', '--purge', 'fonts-urw-base35', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'mailcap', 'media-types', 'mime-support', 'python3', 'python3-biopython', 'python3-mappy', 'python3-minimal', 'python3-numpy', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.10', 'python3.10-minimal', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 1m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg', '--purge', 'nanolyse'] 1m37.7s DUMP: dpkg: warning: ignoring request to remove nanolyse which isn't installed 1m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg', '--purge', 'nanolyse'] 1m37.7s INFO: Running scripts post_purge 1m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_purge_exceptions'] 1m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_purge_exceptions'] 1m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg', '--purge', '--pending'] 1m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg', '--purge', '--pending'] 1m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg', '--remove', '--pending'] 1m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg', '--remove', '--pending'] 1m37.7s INFO: Running scripts post_test 1m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_test_exceptions'] 1m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'tmp/scripts/post_test_exceptions'] 1m37.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 1m38.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 1m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg-divert', '--list'] 1m38.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'dpkg-divert', '--list'] 1m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', 'clean'] 1m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh', 'apt-get', 'clean'] 1m38.3s DEBUG: Recording chroot state 1m39.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/shm'] 1m39.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/shm'] 1m39.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/console'] 1m39.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/console'] 1m39.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/ptmx'] 1m39.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/ptmx'] 1m39.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/pts'] 1m39.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/dev/pts'] 1m39.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/proc'] 1m39.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh/proc'] 1m39.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 1m39.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjhrrn5wh'] 1m39.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpjhrrn5wh 1m39.5s INFO: PASS: Upgrading between Debian distributions. 1m39.5s INFO: PASS: All tests. 1m39.5s INFO: piuparts run ends. ret=0 End: 2022-11-24 15:36:05 GMT