Start: 2024-12-13 15:08:19 GMT [testing] Package: nanopolish Source: nanopolish (0.14.0-1) Version: 0.14.0-1+b1 Installed-Size: 9343 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libhdf5-103-1t64, libhts3t64 (>= 1.17), libslow5-0t64 (>= 0.5.1), libstdc++6 (>= 13.1), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3:any, perl:any Recommends: python3-biopython, python3-pysam Suggests: perl, make Description: consensus caller for nanopore sequencing data Homepage: https://github.com/jts/nanopolish Description-md5: c65181cb6cafc3c3d9c0c69affe72640 Section: science Priority: optional Filename: pool/main/n/nanopolish/nanopolish_0.14.0-1+b1_amd64.deb Size: 2196264 MD5sum: c117a0a1d463b3593bb80c913d6d1534 SHA256: 1502670af9024882a30d80669852919bf059b66e0585b2be9239a7ec116c5a2a [sid] Package: nanopolish Source: nanopolish (0.14.0-1) Version: 0.14.0-1+b2 Installed-Size: 9639 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libhdf5-310 (>= 1.14.3), libhts3t64 (>= 1.17), libslow5-0t64 (>= 0.5.1), libstdc++6 (>= 14), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3:any, perl:any Recommends: python3-biopython, python3-pysam Suggests: perl, make Description: consensus caller for nanopore sequencing data Homepage: https://github.com/jts/nanopolish Description-md5: c65181cb6cafc3c3d9c0c69affe72640 Section: science Priority: optional Filename: pool/main/n/nanopolish/nanopolish_0.14.0-1+b2_amd64.deb Size: 2201352 MD5sum: 85e7c86fe150900f2226ce5ee067a983 SHA256: 62a71b8d13ddd4d54c0d7ea141a2e913a48252f18dfc11b7980ad08139bd0889 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt nanopolish=0.14.0-1+b2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt nanopolish=0.14.0-1+b2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpu4mwkcnv 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpu4mwkcnv 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpu4mwkcnv/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', 'update'] 0m3.3s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [172 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9351 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6276 kB] Fetched 15.8 MB in 2s (8634 kB/s) Reading package lists... 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', 'update'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s DUMP: 8870e87caea38e16efb3c1bf6a9296cd - 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s INFO: Running scripts post_setup 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_dummy_users'] 0m5.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_dummy_users'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_forbid_home'] 0m5.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_forbid_home'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_minimize'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_minimize'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_zz_backports'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_setup_zz_backports'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.2s DUMP: install ok installed apt apt 2.9.16 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.2-12 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2~rc1-2 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-8 install ok installed gpgv gpgv 2.2.45-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.2 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.16 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libblkid1:amd64 libblkid1 2.40.2-12 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-4 install ok installed libc6:amd64 libc6 2.40-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2~rc1-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.274 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2~rc1-2 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-12 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-12 install ok installed libss2:amd64 libss2 1.47.2~rc1-2 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-8 install ok installed libsystemd0:amd64 libsystemd0 257~rc3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257~rc3-1 install ok installed libunistring5:amd64 libunistring5 1.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-12 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-12 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2~rc1-2 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-12 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-12 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m5.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m5.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m5.6s INFO: Running scripts is_testable 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/is_testable_uninstallable'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/is_testable_uninstallable'] 0m5.6s INFO: Running scripts pre_test 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_test_exceptions'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_test_exceptions'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_test_root_password'] 0m5.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_test_root_password'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'show', '--no-all-versions', 'nanopolish'] 0m5.9s DUMP: Package: nanopolish Source: nanopolish (0.14.0-1) Version: 0.14.0-1+b1 Installed-Size: 9343 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libhdf5-103-1t64, libhts3t64 (>= 1.17), libslow5-0t64 (>= 0.5.1), libstdc++6 (>= 13.1), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3:any, perl:any Recommends: python3-biopython, python3-pysam Suggests: perl, make Description-en: consensus caller for nanopore sequencing data Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more. Description-md5: c65181cb6cafc3c3d9c0c69affe72640 Homepage: https://github.com/jts/nanopolish Section: science Priority: optional Filename: pool/main/n/nanopolish/nanopolish_0.14.0-1+b1_amd64.deb Size: 2196264 MD5sum: c117a0a1d463b3593bb80c913d6d1534 SHA256: 1502670af9024882a30d80669852919bf059b66e0585b2be9239a7ec116c5a2a 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'show', '--no-all-versions', 'nanopolish'] 0m5.9s INFO: apt-cache knows about the following packages: nanopolish 0m5.9s INFO: Running scripts pre_install 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_database-server'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_database-server'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_exceptions'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_exceptions'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_extras'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_extras'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy'] 0m6.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy', 'nanopolish'] 0m6.0s DUMP: nanopolish: Installed: (none) Candidate: 0.14.0-1+b1 Version table: 0.14.0-1+b1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy', 'nanopolish'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', '-y', 'install', 'nanopolish'] 0m14.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libaec0 libbrotli1 libcurl3t64-gnutls libcurl4t64 libdeflate0 libexpat1 libgdbm-compat4t64 libgdbm6t64 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhts3t64 libhtscodecs2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnsl2 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libslow5-0t64 libsqlite3-0 libssh2-1t64 libstreamvbyte0 libsz2 libtirpc-common libtirpc3t64 media-types netbase perl perl-modules-5.40 python3 python3-minimal python3.12 python3.12-minimal readline-common Suggested packages: gdbm-l10n krb5-doc krb5-user sensible-utils make perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.12-venv python3.12-doc binutils binfmt-support readline-doc Recommended packages: ca-certificates krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-biopython python3-pysam The following NEW packages will be installed: libaec0 libbrotli1 libcurl3t64-gnutls libcurl4t64 libdeflate0 libexpat1 libgdbm-compat4t64 libgdbm6t64 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhts3t64 libhtscodecs2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnsl2 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libslow5-0t64 libsqlite3-0 libssh2-1t64 libstreamvbyte0 libsz2 libtirpc-common libtirpc3t64 media-types nanopolish netbase perl perl-modules-5.40 python3 python3-minimal python3.12 python3.12-minimal readline-common 0 upgraded, 50 newly installed, 0 to remove and 0 not upgraded. Need to get 21.8 MB of archives. After this operation, 102 MB of additional disk space will be used. 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5141 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-1_amd64.deb ... Unpacking python3.12-minimal (3.12.8-1) ... Setting up libpython3.12-minimal:amd64 (3.12.8-1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5461 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../14-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-1) ... 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Preparing to unpack .../14-libngtcp2-crypto-gnutls8_1.9.1-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../15-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../16-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../17-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../18-libcurl3t64-gnutls_8.11.0-1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.11.0-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../19-libcurl4t64_8.11.0-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.11.0-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../20-libdeflate0_1.22-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.22-1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../21-libgomp1_14.2.0-8_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-8) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../22-libsz2_1.1.3-1+b1_amd64.deb ... Unpacking libsz2:amd64 (1.1.3-1+b1) ... Selecting previously unselected package libhdf5-103-1t64:amd64. Preparing to unpack .../23-libhdf5-103-1t64_1.10.10+repack-5+b1_amd64.deb ... Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-5+b1) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../24-libhtscodecs2_1.6.1-1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.1-1) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../25-libhts3t64_1.20+ds-2_amd64.deb ... Unpacking libhts3t64:amd64 (1.20+ds-2) ... Selecting previously unselected package libslow5-0t64:amd64. Preparing to unpack .../26-libslow5-0t64_0.7.0+dfsg-3+b2_amd64.deb ... Unpacking libslow5-0t64:amd64 (0.7.0+dfsg-3+b2) ... Selecting previously unselected package libstreamvbyte0:amd64. Preparing to unpack .../27-libstreamvbyte0_0.4.1-4+b1_amd64.deb ... Unpacking libstreamvbyte0:amd64 (0.4.1-4+b1) ... Selecting previously unselected package nanopolish. Preparing to unpack .../28-nanopolish_0.14.0-1+b1_amd64.deb ... Unpacking nanopolish (0.14.0-1+b1) ... Setting up libhtscodecs2:amd64 (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libstreamvbyte0:amd64 (0.4.1-4+b1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.22-1) ... Setting up libgomp1:amd64 (14.2.0-8) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libslow5-0t64:amd64 (0.7.0+dfsg-3+b2) ... Setting up libncursesw6:amd64 (6.5-2+b1) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up perl-modules-5.40 (5.40.0-8) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up readline-common (8.2-5) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up libperl5.40:amd64 (5.40.0-8) ... Setting up perl (5.40.0-8) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libcurl3t64-gnutls:amd64 (8.11.0-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-5+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-1) ... Setting up python3.12 (3.12.8-1) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up nanopolish (0.14.0-1+b1) ... Processing triggers for libc-bin (2.40-4) ... 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', '-y', 'install', 'nanopolish'] 0m14.0s INFO: Running scripts post_install 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_install_exceptions'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_install_exceptions'] 0m14.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m14.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m14.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpu4mwkcnv to sid 0m14.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m14.7s INFO: Running scripts pre_distupgrade 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', 'update'] 0m19.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7345 kB] Fetched 17.6 MB in 3s (5647 kB/s) Reading package lists... 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', 'update'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', '-yf', 'dist-upgrade'] 0m25.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libhdf5-103-1t64 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libhdf5-310 The following packages will be upgraded: apt libapt-pkg6.0t64 libcurl3t64-gnutls libcurl4t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libsystemd0 libudev1 nanopolish python3 python3-minimal python3.12 python3.12-minimal 14 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 13.0 MB of archives. After this operation, 4659 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 257-2 [448 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 257-2 [147 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.17 [1113 kB] Get:4 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.17 [1368 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get:6 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.8-2 [677 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.8-2 [1970 kB] Get:9 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.8-2 [2163 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.8-2 [816 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get:12 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.11.1-1 [360 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libhdf5-310 amd64 1.14.5+repack-1 [1340 kB] Get:15 http://deb.debian.org/debian sid/main amd64 nanopolish amd64 0.14.0-1+b2 [2201 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.0 MB in 0s (88.1 MB/s) (Reading database ... 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Preparing to unpack .../3-python3.12-minimal_3.12.8-2_amd64.deb ... Unpacking python3.12-minimal (3.12.8-2) over (3.12.8-1) ... Preparing to unpack .../4-libpython3.12-minimal_3.12.8-2_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-2) over (3.12.8-1) ... Preparing to unpack .../5-libpython3-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-1) ... Preparing to unpack .../6-libcurl3t64-gnutls_8.11.1-1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.11.1-1) over (8.11.0-1) ... Preparing to unpack .../7-libcurl4t64_8.11.1-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.11.1-1) over (8.11.0-1) ... Selecting previously unselected package libhdf5-310:amd64. Preparing to unpack .../8-libhdf5-310_1.14.5+repack-1_amd64.deb ... Unpacking libhdf5-310:amd64 (1.14.5+repack-1) ... Preparing to unpack .../9-nanopolish_0.14.0-1+b2_amd64.deb ... Unpacking nanopolish (0.14.0-1+b2) over (0.14.0-1+b1) ... Setting up libcurl4t64:amd64 (8.11.1-1) ... Setting up libpython3.12-minimal:amd64 (3.12.8-2) ... Setting up libcurl3t64-gnutls:amd64 (8.11.1-1) ... Setting up libhdf5-310:amd64 (1.14.5+repack-1) ... Setting up python3.12-minimal (3.12.8-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-2) ... Setting up python3.12 (3.12.8-2) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up nanopolish (0.14.0-1+b2) ... Processing triggers for libc-bin (2.40-4) ... 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', '-yf', 'dist-upgrade'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.5s DUMP: 18f2990e3bcee768e07b8708edcaf618 - 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'show', '--no-all-versions', 'nanopolish'] 0m26.8s DUMP: Package: nanopolish Source: nanopolish (0.14.0-1) Version: 0.14.0-1+b2 Installed-Size: 9639 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libhdf5-310 (>= 1.14.3), libhts3t64 (>= 1.17), libslow5-0t64 (>= 0.5.1), libstdc++6 (>= 14), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3:any, perl:any Recommends: python3-biopython, python3-pysam Suggests: perl, make Description-en: consensus caller for nanopore sequencing data Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more. Description-md5: c65181cb6cafc3c3d9c0c69affe72640 Homepage: https://github.com/jts/nanopolish Section: science Priority: optional Filename: pool/main/n/nanopolish/nanopolish_0.14.0-1+b2_amd64.deb Size: 2201352 MD5sum: 85e7c86fe150900f2226ce5ee067a983 SHA256: 62a71b8d13ddd4d54c0d7ea141a2e913a48252f18dfc11b7980ad08139bd0889 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'show', '--no-all-versions', 'nanopolish'] 0m26.8s INFO: apt-cache knows about the following packages: nanopolish 0m26.8s INFO: Running scripts pre_install 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_database-server'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_database-server'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_exceptions'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_exceptions'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_extras'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_extras'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy'] 0m27.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy', 'nanopolish'] 0m27.1s DUMP: nanopolish: Installed: 0.14.0-1+b2 Candidate: 0.14.0-1+b2 Version table: *** 0.14.0-1+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy', 'nanopolish'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', '-y', 'install', 'nanopolish'] 0m27.7s DUMP: Reading package lists... Building dependency tree... Reading state information... nanopolish is already the newest version (0.14.0-1+b2). The following package was automatically installed and is no longer required: libhdf5-103-1t64 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', '-y', 'install', 'nanopolish'] 0m27.7s INFO: Running scripts post_install 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_install_exceptions'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_install_exceptions'] 0m27.7s INFO: Running scripts post_distupgrade 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m28.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m28.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m28.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m28.8s INFO: Running scripts pre_install 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_database-server'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_database-server'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_exceptions'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_exceptions'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_extras'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_extras'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy'] 0m29.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy', 'nanopolish'] 0m29.0s DUMP: nanopolish: Installed: 0.14.0-1+b2 Candidate: 0.14.0-1+b2 Version table: *** 0.14.0-1+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-cache', 'policy', 'nanopolish'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', '-y', 'install', 'nanopolish=0.14.0-1+b2'] 0m29.8s DUMP: Reading package lists... Building dependency tree... Reading state information... nanopolish is already the newest version (0.14.0-1+b2). The following package was automatically installed and is no longer required: libhdf5-103-1t64 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', '-y', 'install', 'nanopolish=0.14.0-1+b2'] 0m29.8s INFO: Running scripts post_install 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_install_exceptions'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_install_exceptions'] 0m29.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m30.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m31.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', '-ac', '--ignore-obsolete'] 0m32.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', '-ac', '--ignore-obsolete'] 0m32.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.8s DUMP: 0.15.6 0m32.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.8s INFO: Running adequate version 0.15.6 now. 0m32.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'nanopolish'] 0m32.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'nanopolish'] 0m32.9s INFO: Running scripts pre_remove 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_exceptions'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/pre_remove_exceptions'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.8s DUMP: install ok installed apt apt 2.9.17 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.2-12 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2~rc1-2 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-8 install ok installed gpgv gpgv 2.2.45-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.2 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.17 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libblkid1:amd64 libblkid1 2.40.2-12 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-4 install ok installed libc6:amd64 libc6 2.40-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2~rc1-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.11.1-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.11.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.274 install ok installed libdeflate0:amd64 libdeflate0 1.22-1 install ok installed libexpat1:amd64 libexpat1 2.6.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2~rc1-2 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-8 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-3 install ok installed libhdf5-103-1t64:amd64 libhdf5-103-1t64 1.10.10+repack-5+b1 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libhts3t64:amd64 libhts3t64 1.20+ds-2 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-3 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.18+dfsg-3+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-12 install ok installed libncursesw6:amd64 libncursesw6 6.5-2+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.6.0-2 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.9.1-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.9.1-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libperl5.40:amd64 libperl5.40 5.40.0-8 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.7-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.8-2 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.8-2 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-8 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-8 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libslow5-0t64:amd64 libslow5-0t64 0.7.0+dfsg-3+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-12 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.2~rc1-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-8 install ok installed libstreamvbyte0:amd64 libstreamvbyte0 0.4.1-4+b1 install ok installed libsystemd0:amd64 libsystemd0 257-2 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3+b1 install ok installed libudev1:amd64 libudev1 257-2 install ok installed libunistring5:amd64 libunistring5 1.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-12 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-12 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2~rc1-2 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40.2-12 install ok installed nanopolish nanopolish 0.14.0-1+b2 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed netbase netbase 6.4 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl perl 5.40.0-8 install ok installed perl-base perl-base 5.40.0-8 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.0-8 install ok installed python3 python3 3.12.7-1 install ok installed python3-minimal python3-minimal 3.12.7-1 install ok installed python3.12 python3.12 3.12.8-2 install ok installed python3.12-minimal python3.12-minimal 3.12.8-2 install ok installed readline-common readline-common 8.2-5 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-12 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', 'remove', 'libaec0:amd64', 'libbrotli1:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-310:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl2:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslow5-0t64:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstreamvbyte0:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'media-types', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'nanopolish'] 0m36.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libaec0 libbrotli1 libcurl3t64-gnutls libcurl4t64 libdeflate0 libexpat1 libgdbm-compat4t64 libgdbm6t64 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhdf5-310 libhts3t64 libhtscodecs2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnsl2 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libslow5-0t64 libsqlite3-0 libssh2-1t64 libstreamvbyte0 libsz2 libtirpc-common libtirpc3t64 media-types nanopolish netbase perl perl-modules-5.40 python3 python3-minimal python3.12 python3.12-minimal readline-common 0 upgraded, 0 newly installed, 51 to remove and 0 not upgraded. After this operation, 107 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8411 files and directories currently installed.) Removing nanopolish (0.14.0-1+b2) ... Removing libhdf5-310:amd64 (1.14.5+repack-1) ... Removing libhdf5-103-1t64:amd64 (1.10.10+repack-5+b1) ... Removing libsz2:amd64 (1.1.3-1+b1) ... Removing libaec0:amd64 (1.1.3-1+b1) ... Removing libcurl4t64:amd64 (8.11.1-1) ... Removing libhts3t64:amd64 (1.20+ds-2) ... Removing libcurl3t64-gnutls:amd64 (8.11.1-1) ... Removing libbrotli1:amd64 (1.1.0-2+b6) ... Removing libdeflate0:amd64 (1.22-1) ... Removing python3 (3.12.7-1) ... Removing python3.12 (3.12.8-2) ... Removing python3-minimal (3.12.7-1) ... Removing python3.12-minimal (3.12.8-2) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing perl (5.40.0-8) ... Removing libperl5.40:amd64 (5.40.0-8) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing libgomp1:amd64 (14.2.0-8) ... Removing libpython3-stdlib:amd64 (3.12.7-1) ... Removing libpython3.12-stdlib:amd64 (3.12.8-2) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-3+b3) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-3) ... Removing libhtscodecs2:amd64 (1.6.1-1) ... Removing libkrb5-3:amd64 (1.21.3-3) ... Removing libk5crypto3:amd64 (1.21.3-3) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-3) ... Removing libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Removing libncursesw6:amd64 (6.5-2+b1) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libnghttp3-9:amd64 (1.6.0-2) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Removing libngtcp2-16:amd64 (1.9.1-1) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libpython3.12-minimal:amd64 (3.12.8-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-5) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Removing libslow5-0t64:amd64 (0.7.0+dfsg-3+b2) ... Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libstreamvbyte0:amd64 (0.4.1-4+b1) ... Removing libtirpc-common (1.3.4+ds-1.3) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing perl-modules-5.40 (5.40.0-8) ... Removing readline-common (8.2-5) ... Processing triggers for libc-bin (2.40-4) ... 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', 'remove', 'libaec0:amd64', 'libbrotli1:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-310:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl2:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslow5-0t64:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstreamvbyte0:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'media-types', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'nanopolish'] 0m36.6s INFO: Running scripts post_remove 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_remove_exceptions'] 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_remove_exceptions'] 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg', '--purge', 'libaec0:amd64', 'libbrotli1:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-310:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl2:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslow5-0t64:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstreamvbyte0:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'media-types', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.12', 'python3.12-minimal', 'readline-common'] 0m36.7s DUMP: dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed (Reading database ... 5146 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-3) ... dpkg: warning: ignoring request to remove libhdf5-103-1t64 which isn't installed dpkg: warning: ignoring request to remove libhdf5-310 which isn't installed dpkg: warning: ignoring request to remove libhts3t64 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-16 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.8-2) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-5) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libslow5-0t64 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libstreamvbyte0 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.3) ... Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for perl (5.40.0-8) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed Purging configuration files for python3 (3.12.7-1) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.8-2) ... Purging configuration files for readline-common (8.2-5) ... 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg', '--purge', 'libaec0:amd64', 'libbrotli1:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-310:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl2:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslow5-0t64:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstreamvbyte0:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'media-types', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.12', 'python3.12-minimal', 'readline-common'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg', '--purge', 'nanopolish'] 0m36.7s DUMP: dpkg: warning: ignoring request to remove nanopolish which isn't installed 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg', '--purge', 'nanopolish'] 0m36.7s INFO: Running scripts post_purge 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_purge_exceptions'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_purge_exceptions'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg', '--purge', '--pending'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg', '--purge', '--pending'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg', '--remove', '--pending'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg', '--remove', '--pending'] 0m36.7s INFO: Running scripts post_test 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_test_exceptions'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'tmp/scripts/post_test_exceptions'] 0m36.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m37.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg-divert', '--list'] 0m37.2s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'dpkg-divert', '--list'] 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', 'clean'] 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv', 'apt-get', 'clean'] 0m37.2s DEBUG: Recording chroot state 0m38.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/shm'] 0m38.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/shm'] 0m38.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/console'] 0m38.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/console'] 0m38.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/ptmx'] 0m38.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/ptmx'] 0m38.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/pts'] 0m38.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/dev/pts'] 0m38.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/proc'] 0m38.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv/proc'] 0m38.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m38.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpu4mwkcnv'] 0m38.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpu4mwkcnv 0m38.3s INFO: PASS: Upgrading between Debian distributions. 0m38.3s INFO: PASS: All tests. 0m38.3s INFO: piuparts run ends. ret=0 End: 2024-12-13 15:08:58 GMT