Start: 2021-10-25 03:29:48 GMT [testing] Package: nanosv Version: 1.2.4+git20190409.c1ae30c-5 Installed-Size: 20560 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-pysam, python3-vcf, python3:any Recommends: sambamba Description: structural variant caller for nanopore data Homepage: https://github.com/mroosmalen/nanosv Description-md5: 7f9382ae1325c01d058025b24184dcc0 Section: science Priority: optional Filename: pool/main/n/nanosv/nanosv_1.2.4+git20190409.c1ae30c-5_all.deb Size: 2828320 MD5sum: ddd83cc83c1af9ff521a5a4aac1860fe SHA256: 286b195047413270488ff1b8544b105c6ef25a0d616c2e5aaeb782df59ec7f64 [sid] Package: nanosv Version: 1.2.4+git20190409.c1ae30c-6 Installed-Size: 20558 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-pysam, python3-vcf, python3:any Recommends: sambamba Description: structural variant caller for nanopore data Homepage: https://github.com/mroosmalen/nanosv Description-md5: 7f9382ae1325c01d058025b24184dcc0 Section: science Priority: optional Filename: pool/main/n/nanosv/nanosv_1.2.4+git20190409.c1ae30c-6_all.deb Size: 3043072 MD5sum: 2a9a73507721d5a0a442874b8bcdcd10 SHA256: a3824a4d160daed76678b12aeeba7083bea2a44d9ff058732a32223e7d5ace26 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt nanosv=1.2.4+git20190409.c1ae30c-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt nanosv=1.2.4+git20190409.c1ae30c-6 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-18-amd64 #1 SMP Debian 4.19.208-1 (2021-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp8dy24jfu 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp8dy24jfu 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/proc'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/proc'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/pts'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/pts'] 0m2.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/ptmx'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/ptmx'] 0m2.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/console'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/console'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/shm'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/shm'] 0m2.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp8dy24jfu/tmp/scripts/ 0m2.3s INFO: Running scripts post_chroot_unpack 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', 'update'] 0m5.2s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [128 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8292 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5704 kB] Fetched 14.1 MB in 2s (6215 kB/s) Reading package lists... 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', 'update'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', '-yf', 'dist-upgrade'] 0m8.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt bsdutils dash gcc-11-base libapt-pkg6.0 libblkid1 libgcc-s1 libmount1 libsmartcols1 libstdc++6 libuuid1 mount tzdata util-linux 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5965 kB of archives. After this operation, 38.9 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.37.2-4 [149 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 dash amd64 0.5.11+git20210120+802ebd4-2 [115 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.37.2-4 [1197 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 gcc-11-base amd64 11.2.0-10 [206 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libgcc-s1 amd64 11.2.0-10 [42.0 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libstdc++6 amd64 11.2.0-10 [577 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libapt-pkg6.0 amd64 2.3.11 [1026 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 apt amd64 2.3.11 [1506 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.37.2-4 [190 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.37.2-4 [201 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.37.2-4 [218 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.37.2-4 [161 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.37.2-4 [84.7 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2021d-1 [291 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5965 kB in 0s (50.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.37.2-4_amd64.deb ... Unpacking bsdutils (1:2.37.2-4) over (1:2.37.2-3) ... Setting up bsdutils (1:2.37.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210120+802ebd4-2_amd64.deb ... Unpacking dash (0.5.11+git20210120+802ebd4-2) over (0.5.11+git20210120+802ebd4-1) ... Setting up dash (0.5.11+git20210120+802ebd4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../util-linux_2.37.2-4_amd64.deb ... Unpacking util-linux (2.37.2-4) over (2.37.2-3) ... Setting up util-linux (2.37.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../gcc-11-base_11.2.0-10_amd64.deb ... Unpacking gcc-11-base:amd64 (11.2.0-10) over (11.2.0-9) ... Setting up gcc-11-base:amd64 (11.2.0-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11.2.0-10_amd64.deb ... Unpacking libgcc-s1:amd64 (11.2.0-10) over (11.2.0-9) ... Setting up libgcc-s1:amd64 (11.2.0-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../libstdc++6_11.2.0-10_amd64.deb ... Unpacking libstdc++6:amd64 (11.2.0-10) over (11.2.0-9) ... Setting up libstdc++6:amd64 (11.2.0-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.11_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.3.11) over (2.3.9) ... Setting up libapt-pkg6.0:amd64 (2.3.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../archives/apt_2.3.11_amd64.deb ... Unpacking apt (2.3.11) over (2.3.9) ... Setting up apt (2.3.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../mount_2.37.2-4_amd64.deb ... Unpacking mount (2.37.2-4) over (2.37.2-3) ... Preparing to unpack .../libblkid1_2.37.2-4_amd64.deb ... Unpacking libblkid1:amd64 (2.37.2-4) over (2.37.2-3) ... Setting up libblkid1:amd64 (2.37.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../libmount1_2.37.2-4_amd64.deb ... Unpacking libmount1:amd64 (2.37.2-4) over (2.37.2-3) ... Setting up libmount1:amd64 (2.37.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.37.2-4_amd64.deb ... Unpacking libsmartcols1:amd64 (2.37.2-4) over (2.37.2-3) ... Setting up libsmartcols1:amd64 (2.37.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../libuuid1_2.37.2-4_amd64.deb ... Unpacking libuuid1:amd64 (2.37.2-4) over (2.37.2-3) ... Setting up libuuid1:amd64 (2.37.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../tzdata_2021d-1_all.deb ... Unpacking tzdata (2021d-1) over (2021c-2) ... Setting up tzdata (2021d-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Oct 25 03:29:57 UTC 2021. Universal Time is now: Mon Oct 25 03:29:57 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up mount (2.37.2-4) ... Processing triggers for libc-bin (2.32-4) ... 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', '-yf', 'dist-upgrade'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.8s DUMP: fad78df1a0fea13d42be4ac4682a350d - 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.8s INFO: Running scripts post_setup 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_dummy_users'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_dummy_users'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_forbid_home'] 0m10.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_forbid_home'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_minimize'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_minimize'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_zz_backports'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_setup_zz_backports'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.7s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.11 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-3+b2 install ok installed bsdutils bsdutils 1:2.37.2-4 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-2 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-11 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-10 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.11 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1 install ok installed libblkid1:amd64 libblkid1 2.37.2-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.32-4 install ok installed libc6:amd64 libc6 2.32-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.25-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-10 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-3+b1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-4 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-5 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-10 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-10 install ok installed libpam-runtime libpam-runtime 1.4.0-10 install ok installed libpam0g:amd64 libpam0g 1.4.0-10 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.2-2 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-4 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-10 install ok installed libsystemd0:amd64 libsystemd0 249.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.17.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-4 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 249.5-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-4 install ok installed ncurses-base ncurses-base 6.2+20201114-4 install ok installed ncurses-bin ncurses-bin 6.2+20201114-4 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.00-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021d-1 install ok installed util-linux util-linux 2.37.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m10.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m11.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m11.1s INFO: Running scripts is_testable 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/is_testable_uninstallable'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/is_testable_uninstallable'] 0m11.1s INFO: Running scripts pre_test 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_test_exceptions'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_test_exceptions'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_test_root_password'] 0m11.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_test_root_password'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'show', '--no-all-versions', 'nanosv'] 0m11.3s DUMP: Package: nanosv Version: 1.2.4+git20190409.c1ae30c-5 Installed-Size: 20560 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-pysam, python3-vcf, python3:any Recommends: sambamba Description-en: structural variant caller for nanopore data NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies?? MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers. NanoSV has been extensively tested using Oxford Nanopore MinION sequencing data. Description-md5: 7f9382ae1325c01d058025b24184dcc0 Homepage: https://github.com/mroosmalen/nanosv Section: science Priority: optional Filename: pool/main/n/nanosv/nanosv_1.2.4+git20190409.c1ae30c-5_all.deb Size: 2828320 MD5sum: ddd83cc83c1af9ff521a5a4aac1860fe SHA256: 286b195047413270488ff1b8544b105c6ef25a0d616c2e5aaeb782df59ec7f64 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'show', '--no-all-versions', 'nanosv'] 0m11.3s INFO: apt-cache knows about the following packages: nanosv 0m11.3s INFO: Running scripts pre_install 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_database-server'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_database-server'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_exceptions'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_exceptions'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_extras'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_extras'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy'] 0m11.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy', 'nanosv'] 0m11.4s DUMP: nanosv: Installed: (none) Candidate: 1.2.4+git20190409.c1ae30c-5 Version table: 1.2.4+git20190409.c1ae30c-5 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy', 'nanosv'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', '-y', 'install', 'nanosv'] 0m17.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbrotli1 libcurl3-gnutls libdeflate0 libexpat1 libhts3 libhtscodecs2 libldap-2.4-2 libmpdec3 libncursesw6 libnghttp2-14 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 media-types python3 python3-minimal python3-pkg-resources python3-pysam python3-vcf python3.9 python3.9-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv python3-setuptools python3.9-venv python3.9-doc binutils binfmt-support readline-doc Recommended packages: ca-certificates libldap-common libgpm2 publicsuffix libsasl2-modules sambamba The following NEW packages will be installed: libbrotli1 libcurl3-gnutls libdeflate0 libexpat1 libhts3 libhtscodecs2 libldap-2.4-2 libmpdec3 libncursesw6 libnghttp2-14 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 media-types nanosv python3 python3-minimal python3-pkg-resources python3-pysam python3-vcf python3.9 python3.9-minimal readline-common 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 13.0 MB of archives. After this operation, 55.1 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libpython3.9-minimal amd64 3.9.7-4 [804 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.4.1-2+b1 [104 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 python3.9-minimal amd64 3.9.7-4 [1963 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 media-types all 4.0.0 [30.3 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.2+20201114-4 [132 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.1-2 [73.8 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.1-2 [168 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libpython3.9-stdlib amd64 3.9.7-4 [1688 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 python3.9 amd64 3.9.7-4 [480 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libldap-2.4-2 amd64 2.4.59+dfsg-1 [232 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-2 [178 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+b1 [338 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.8-1 [53.1 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.1.1-3+b1 [50.1 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.13+ds-2 [395 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 python3-pysam amd64 0.17.0+ds-2 [1627 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 58.2.0-1 [192 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 python3-vcf amd64 0.6.8+git20170215.476169c-8 [43.0 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 nanosv all 1.2.4+git20190409.c1ae30c-5 [2828 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.0 MB in 0s (70.5 MB/s) Selecting previously unselected package libpython3.9-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6663 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.7-4_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.7-4) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.4.1-2+b1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.1-2+b1) ... Selecting previously unselected package python3.9-minimal. 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Preparing to unpack .../08-libssh2-1_1.10.0-2_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-2) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../09-libcurl3-gnutls_7.74.0-1.3+b1_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.74.0-1.3+b1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../10-libdeflate0_1.8-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.8-1) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../11-libhtscodecs2_1.1.1-3+b1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.1.1-3+b1) ... Selecting previously unselected package libhts3:amd64. Preparing to unpack .../12-libhts3_1.13+ds-2_amd64.deb ... Unpacking libhts3:amd64 (1.13+ds-2) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../13-python3-pysam_0.17.0+ds-2_amd64.deb ... Unpacking python3-pysam (0.17.0+ds-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../14-python3-pkg-resources_58.2.0-1_all.deb ... Unpacking python3-pkg-resources (58.2.0-1) ... Selecting previously unselected package python3-vcf. Preparing to unpack .../15-python3-vcf_0.6.8+git20170215.476169c-8_amd64.deb ... Unpacking python3-vcf (0.6.8+git20170215.476169c-8) ... Selecting previously unselected package nanosv. Preparing to unpack .../16-nanosv_1.2.4+git20190409.c1ae30c-5_all.deb ... Unpacking nanosv (1.2.4+git20190409.c1ae30c-5) ... Setting up libhtscodecs2:amd64 (1.1.1-3+b1) ... Setting up media-types (4.0.0) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.36.0-2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libdeflate0:amd64 (1.8-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncursesw6:amd64 (6.2+20201114-4) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libssh2-1:amd64 (1.10.0-2) ... Setting up readline-common (8.1-2) ... Setting up libreadline8:amd64 (8.1-2) ... Setting up libldap-2.4-2:amd64 (2.4.59+dfsg-1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+b1) ... Setting up libpython3.9-stdlib:amd64 (3.9.7-4) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up libhts3:amd64 (1.13+ds-2) ... Setting up python3.9 (3.9.7-4) ... Setting up python3 (3.9.2-3) ... Setting up python3-pkg-resources (58.2.0-1) ... Setting up python3-pysam (0.17.0+ds-2) ... Setting up python3-vcf (0.6.8+git20170215.476169c-8) ... Setting up nanosv (1.2.4+git20190409.c1ae30c-5) ... Processing triggers for libc-bin (2.32-4) ... 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', '-y', 'install', 'nanosv'] 0m17.4s INFO: Running scripts post_install 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_install_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_install_exceptions'] 0m17.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m17.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m17.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp8dy24jfu to sid 0m17.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m17.8s INFO: Running scripts pre_distupgrade 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', 'update'] 0m22.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8790 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6586 kB] Fetched 15.5 MB in 3s (4751 kB/s) Reading package lists... 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', 'update'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', '-yf', 'dist-upgrade'] 0m24.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debconf debianutils libexpat1 libncursesw6 libtinfo6 nanosv ncurses-base ncurses-bin 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4575 kB of archives. After this operation, 7168 B disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.5-1 [93.7 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.2+20210905-1 [133 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.2+20210905-1 [348 kB] Get:4 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.2+20210905-1 [434 kB] Get:5 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.2+20210905-1 [277 kB] Get:6 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.78 [143 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.4.1-3 [104 kB] Get:8 http://deb.debian.org/debian sid/main amd64 nanosv all 1.2.4+git20190409.c1ae30c-6 [3043 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4575 kB in 0s (18.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7706 files and directories currently installed.) Preparing to unpack .../debianutils_5.5-1_amd64.deb ... Unpacking debianutils (5.5-1) over (4.11.2) ... Setting up debianutils (5.5-1) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7702 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.2+20210905-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20210905-1) over (6.2+20201114-4) ... Preparing to unpack .../libtinfo6_6.2+20210905-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.2+20210905-1) over (6.2+20201114-4) ... Setting up libtinfo6:amd64 (6.2+20210905-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7702 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2+20210905-1_amd64.deb ... Unpacking ncurses-bin (6.2+20210905-1) over (6.2+20201114-4) ... Setting up ncurses-bin (6.2+20210905-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7702 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20210905-1_all.deb ... Unpacking ncurses-base (6.2+20210905-1) over (6.2+20201114-4) ... Setting up ncurses-base (6.2+20210905-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7702 files and directories currently installed.) Preparing to unpack .../debconf_1.5.78_all.deb ... Unpacking debconf (1.5.78) over (1.5.77) ... Setting up debconf (1.5.78) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7701 files and directories currently installed.) Preparing to unpack .../libexpat1_2.4.1-3_amd64.deb ... Unpacking libexpat1:amd64 (2.4.1-3) over (2.4.1-2+b1) ... Preparing to unpack .../nanosv_1.2.4+git20190409.c1ae30c-6_all.deb ... Unpacking nanosv (1.2.4+git20190409.c1ae30c-6) over (1.2.4+git20190409.c1ae30c-5) ... Setting up libexpat1:amd64 (2.4.1-3) ... Setting up nanosv (1.2.4+git20190409.c1ae30c-6) ... Setting up libncursesw6:amd64 (6.2+20210905-1) ... Processing triggers for libc-bin (2.32-4) ... 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', '-yf', 'dist-upgrade'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m24.8s DUMP: 7329ecf6ab39475e11fac34de18a7767 - 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'show', '--no-all-versions', 'nanosv'] 0m25.0s DUMP: Package: nanosv Version: 1.2.4+git20190409.c1ae30c-6 Installed-Size: 20558 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-pysam, python3-vcf, python3:any Recommends: sambamba Description-en: structural variant caller for nanopore data NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies?? MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers. NanoSV has been extensively tested using Oxford Nanopore MinION sequencing data. Description-md5: 7f9382ae1325c01d058025b24184dcc0 Homepage: https://github.com/mroosmalen/nanosv Section: science Priority: optional Filename: pool/main/n/nanosv/nanosv_1.2.4+git20190409.c1ae30c-6_all.deb Size: 3043072 MD5sum: 2a9a73507721d5a0a442874b8bcdcd10 SHA256: a3824a4d160daed76678b12aeeba7083bea2a44d9ff058732a32223e7d5ace26 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'show', '--no-all-versions', 'nanosv'] 0m25.0s INFO: apt-cache knows about the following packages: nanosv 0m25.0s INFO: Running scripts pre_install 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_database-server'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_database-server'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_exceptions'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_exceptions'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_extras'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_extras'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy'] 0m25.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy', 'nanosv'] 0m25.1s DUMP: nanosv: Installed: 1.2.4+git20190409.c1ae30c-6 Candidate: 1.2.4+git20190409.c1ae30c-6 Version table: *** 1.2.4+git20190409.c1ae30c-6 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m25.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy', 'nanosv'] 0m25.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', '-y', 'install', 'nanosv'] 0m25.5s DUMP: Reading package lists... Building dependency tree... Reading state information... nanosv is already the newest version (1.2.4+git20190409.c1ae30c-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', '-y', 'install', 'nanosv'] 0m25.5s INFO: Running scripts post_install 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_install_exceptions'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_install_exceptions'] 0m25.6s INFO: Running scripts post_distupgrade 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_distupgrade_exceptions'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_distupgrade_exceptions'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_distupgrade_zz_backports'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_distupgrade_zz_backports'] 0m25.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m25.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m25.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m26.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m26.3s INFO: Running scripts pre_install 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_database-server'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_database-server'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_exceptions'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_exceptions'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_extras'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_extras'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy'] 0m26.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy', 'nanosv'] 0m26.4s DUMP: nanosv: Installed: 1.2.4+git20190409.c1ae30c-6 Candidate: 1.2.4+git20190409.c1ae30c-6 Version table: *** 1.2.4+git20190409.c1ae30c-6 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-cache', 'policy', 'nanosv'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', '-y', 'install', 'nanosv=1.2.4+git20190409.c1ae30c-6'] 0m26.9s DUMP: Reading package lists... Building dependency tree... Reading state information... nanosv is already the newest version (1.2.4+git20190409.c1ae30c-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', '-y', 'install', 'nanosv=1.2.4+git20190409.c1ae30c-6'] 0m26.9s INFO: Running scripts post_install 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_install_exceptions'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_install_exceptions'] 0m26.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m27.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m27.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', '-ac', '--ignore-obsolete'] 0m28.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', '-ac', '--ignore-obsolete'] 0m28.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m28.7s DUMP: 0.15.2 0m28.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m28.7s INFO: Running adequate version 0.15.2 now. 0m28.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'nanosv'] 0m28.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'nanosv'] 0m28.8s INFO: Running scripts pre_remove 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_exceptions'] 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/pre_remove_exceptions'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m30.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.11 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-3+b2 install ok installed bsdutils bsdutils 1:2.37.2-4 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-2 install ok installed debconf debconf 1.5.78 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.5-1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-11 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-10 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.11 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1 install ok installed libblkid1:amd64 libblkid1 2.37.2-4 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.32-4 install ok installed libc6:amd64 libc6 2.32-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.25-2 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.74.0-1.3+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.8-1 install ok installed libexpat1:amd64 libexpat1 2.4.1-3 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-10 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-3+b1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhts3:amd64 libhts3 1.13+ds-2 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.1.1-3+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.59+dfsg-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-4 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libncursesw6:amd64 libncursesw6 6.2+20210905-1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-5 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-10 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-10 install ok installed libpam-runtime libpam-runtime 1.4.0-10 install ok installed libpam0g:amd64 libpam0g 1.4.0-10 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.7-4 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.7-4 install ok installed libreadline8:amd64 libreadline8 8.1-2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1 install ok installed libseccomp2:amd64 libseccomp2 2.5.2-2 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.36.0-2 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-10 install ok installed libsystemd0:amd64 libsystemd0 249.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.17.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20210905-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 249.5-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mount mount 2.37.2-4 install ok installed nanosv nanosv 1.2.4+git20190409.c1ae30c-6 install ok installed ncurses-base ncurses-base 6.2+20210905-1 install ok installed ncurses-bin ncurses-bin 6.2+20210905-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-6 install ok installed python3 python3 3.9.2-3 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3-pkg-resources python3-pkg-resources 58.2.0-1 install ok installed python3-pysam python3-pysam 0.17.0+ds-2 install ok installed python3-vcf python3-vcf 0.6.8+git20170215.476169c-8 install ok installed python3.9 python3.9 3.9.7-4 install ok installed python3.9-minimal python3.9-minimal 3.9.7-4 install ok installed readline-common readline-common 8.1-2 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.00-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021d-1 install ok installed util-linux util-linux 2.37.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', 'remove', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'media-types', 'python3', 'python3-minimal', 'python3-pkg-resources', 'python3-pysam', 'python3-vcf', 'python3.9', 'python3.9-minimal', 'readline-common', 'nanosv'] 0m31.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libbrotli1 libcurl3-gnutls libdeflate0 libexpat1 libhts3 libhtscodecs2 libldap-2.4-2 libmpdec3 libncursesw6 libnghttp2-14 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 media-types nanosv python3 python3-minimal python3-pkg-resources python3-pysam python3-vcf python3.9 python3.9-minimal readline-common 0 upgraded, 0 newly installed, 30 to remove and 0 not upgraded. After this operation, 55.1 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7700 files and directories currently installed.) Removing nanosv (1.2.4+git20190409.c1ae30c-6) ... Removing python3-vcf (0.6.8+git20170215.476169c-8) ... Removing python3-pysam (0.17.0+ds-2) ... Removing libhts3:amd64 (1.13+ds-2) ... Removing libcurl3-gnutls:amd64 (7.74.0-1.3+b1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libdeflate0:amd64 (1.8-1) ... Removing python3-pkg-resources (58.2.0-1) ... Removing python3 (3.9.2-3) ... Removing python3.9 (3.9.7-4) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9-minimal (3.9.7-4) ... Removing libexpat1:amd64 (2.4.1-3) ... Removing libhtscodecs2:amd64 (1.1.1-3+b1) ... Removing libldap-2.4-2:amd64 (2.4.59+dfsg-1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.7-4) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncursesw6:amd64 (6.2+20210905-1) ... Removing libnghttp2-14:amd64 (1.43.0-1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libpython3.9-minimal:amd64 (3.9.7-4) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.1-2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Removing libsqlite3-0:amd64 (3.36.0-2) ... Removing libssh2-1:amd64 (1.10.0-2) ... Removing media-types (4.0.0) ... Removing readline-common (8.1-2) ... Processing triggers for libc-bin (2.32-4) ... 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', 'remove', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'media-types', 'python3', 'python3-minimal', 'python3-pkg-resources', 'python3-pysam', 'python3-vcf', 'python3.9', 'python3.9-minimal', 'readline-common', 'nanosv'] 0m31.4s INFO: Running scripts post_remove 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_remove_exceptions'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_remove_exceptions'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg', '--purge', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'media-types', 'python3', 'python3-minimal', 'python3-pkg-resources', 'python3-pysam', 'python3-vcf', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m31.5s DUMP: dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed (Reading database ... 6661 files and directories currently installed.) Purging configuration files for libpython3.9-minimal:amd64 (3.9.7-4) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for media-types (4.0.0) ... Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-vcf which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.7-4) ... Purging configuration files for readline-common (8.1-2) ... 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg', '--purge', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'media-types', 'python3', 'python3-minimal', 'python3-pkg-resources', 'python3-pysam', 'python3-vcf', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg', '--purge', 'nanosv'] 0m31.5s DUMP: dpkg: warning: ignoring request to remove nanosv which isn't installed 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg', '--purge', 'nanosv'] 0m31.5s INFO: Running scripts post_purge 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_purge_exceptions'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_purge_exceptions'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg', '--purge', '--pending'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg', '--purge', '--pending'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg', '--remove', '--pending'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg', '--remove', '--pending'] 0m31.5s INFO: Running scripts post_test 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_test_exceptions'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'tmp/scripts/post_test_exceptions'] 0m31.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m31.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg-divert', '--list'] 0m31.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'dpkg-divert', '--list'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', 'clean'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu', 'apt-get', 'clean'] 0m31.8s DEBUG: Recording chroot state 0m32.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/shm'] 0m32.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/shm'] 0m32.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/console'] 0m32.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/console'] 0m32.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/ptmx'] 0m32.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/ptmx'] 0m32.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/pts'] 0m32.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/dev/pts'] 0m32.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/proc'] 0m32.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu/proc'] 0m32.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m32.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8dy24jfu'] 0m32.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp8dy24jfu 0m32.7s INFO: PASS: Upgrading between Debian distributions. 0m32.7s INFO: PASS: All tests. 0m32.7s INFO: piuparts run ends. ret=0 End: 2021-10-25 03:30:21 GMT