Start: 2025-04-11 09:28:16 GMT [testing] Package: ncbi-entrez-direct Source: ncbi-entrez-direct (19.2.20230331+dfsg-3) Version: 19.2.20230331+dfsg-3+b6 Installed-Size: 29465 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: curl | wget, libc6 (>= 2.34) Recommends: python3:any Suggests: curl, libxml-simple-perl, libxml2-utils, unzip, perl:any Description: NCBI Entrez utilities on the command line Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/books/NBK179288 Built-Using: golang-1.24 (= 1.24.1-1), golang-github-dataence-porter2 (= 0.0~git20150829.56e4718-5), golang-github-fatih-color (= 1.17.0-1), golang-github-gedex-inflector (= 0.0~git20170307.0.16278e9-1.1), golang-github-gin-contrib-sse (= 0.1.0-2), golang-github-gin-gonic-gin (= 1.8.1-2), golang-github-go-playground-locales (= 0.14.0-3), golang-github-go-playground-universal-translator (= 0.17.0-2), golang-github-go-playground-validator-v10 (= 10.4.1-4), golang-github-klauspost-compress (= 1.18.0+ds1-1), golang-github-klauspost-cpuid (= 2.2.10-1), golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-leodido-go-urn (= 1.2.1-3), golang-github-mattn-go-colorable (= 0.1.13-1), golang-github-mattn-go-isatty (= 0.0.20-1), golang-github-pelletier-go-toml.v2 (= 2.2.1-1), golang-github-shirou-gopsutil (= 4.25.2-1), golang-github-ugorji-go-codec (= 1.2.8-1), golang-go.crypto (= 1:0.25.0-1), golang-golang-x-net (= 1:0.27.0-1), golang-golang-x-sys (= 0.22.0-1), golang-golang-x-text (= 0.22.0-1), golang-google-protobuf (= 1.36.5-1), golang-yaml.v2 (= 2.4.0-5) Description-md5: 10c6a6866d4021f4e8969018b2d1adbc Section: science Priority: optional Filename: pool/main/n/ncbi-entrez-direct/ncbi-entrez-direct_19.2.20230331+dfsg-3+b6_amd64.deb Size: 7329628 MD5sum: ddde3163cdeeebea17f7bc4a523f79b1 SHA256: 2e517cf312f4384164e49212cf859aaa541de8b3aedc9315a69a9d9c67932cd6 [sid] Package: ncbi-entrez-direct Version: 23.8.20250410+dfsg-1 Installed-Size: 32024 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: curl | wget, libc6 (>= 2.34) Recommends: python3:any Suggests: curl, golang-any, libxml-simple-perl, libxml2-utils, unzip, perl:any Description: NCBI Entrez utilities on the command line Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/books/NBK179288 Built-Using: golang-1.24 (= 1.24.2-1), golang-github-dataence-porter2 (= 0.0~git20150829.56e4718-5), golang-github-fatih-color (= 1.17.0-1), golang-github-gedex-inflector (= 0.0~git20170307.0.16278e9-1.1), golang-github-gin-contrib-sse (= 0.1.0-2), golang-github-gin-gonic-gin (= 1.8.1-2), golang-github-go-playground-locales (= 0.14.0-3), golang-github-go-playground-universal-translator (= 0.17.0-2), golang-github-go-playground-validator-v10 (= 10.4.1-4), golang-github-goccy-go-yaml (= 1.9.5-2), golang-github-klauspost-compress (= 1.18.0+ds1-1), golang-github-klauspost-cpuid (= 2.2.10-1), golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-komkom-toml (= 0.0~git20211215.3c8ee9d-2), golang-github-leodido-go-urn (= 1.2.1-3), golang-github-mattn-go-colorable (= 0.1.13-1), golang-github-mattn-go-isatty (= 0.0.20-1), golang-github-pelletier-go-toml.v2 (= 2.2.1-1), golang-github-pkg-errors (= 0.9.1-3), golang-github-shirou-gopsutil (= 4.25.2-1), golang-github-ugorji-go-codec (= 1.2.8-1), golang-go.crypto (= 1:0.25.0-1), golang-golang-x-net (= 1:0.27.0-1), golang-golang-x-sys (= 0.22.0-1), golang-golang-x-text (= 0.22.0-1), golang-golang-x-xerrors (= 0.0~git20231012.104605a-1), golang-google-protobuf (= 1.36.5-1), golang-yaml.v2 (= 2.4.0-5) Description-md5: 10c6a6866d4021f4e8969018b2d1adbc Section: science Priority: optional Filename: pool/main/n/ncbi-entrez-direct/ncbi-entrez-direct_23.8.20250410+dfsg-1_amd64.deb Size: 8493892 MD5sum: fd3c5bcadda5b873a1ecf1dc132730a6 SHA256: cd766a230c4c5b599b99b95d07e8669f2357dfdb7655d83e9ba9482cd5a6b1e1 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt ncbi-entrez-direct=23.8.20250410+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt ncbi-entrez-direct=23.8.20250410+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpa98j37kb 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpa98j37kb 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.6s DEBUG: Created policy-rc.d and chmodded it. 0m0.6s DEBUG: Created resolv.conf. 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpa98j37kb/tmp/scripts/ 0m0.6s INFO: Running scripts post_chroot_unpack 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', 'update'] 0m3.1s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [175 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9651 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6476 kB] Fetched 16.3 MB in 2s (9530 kB/s) Reading package lists... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: liblastlog2-2 libsqlite3-0 The following packages will be upgraded: apt bsdutils libapt-pkg7.0 libblkid1 liblzma5 libmount1 libsmartcols1 libssl3t64 libsystemd0 libudev1 libuuid1 login login.defs mount openssl-provider-legacy passwd sqv util-linux 18 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 11.4 MB of archives. After this operation, 3059 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.41-3 [110 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 liblastlog2-2 amd64 2.41-3 [28.3 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.41-3 [37.5 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.41-3 [171 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.41-3 [208 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.41-3 [142 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.41-3 [1231 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.41-3 [162 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 liblzma5 amd64 5.8.1-1 [309 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 openssl-provider-legacy amd64 3.5.0-1 [307 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.5.0-1 [2432 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257.5-2 [453 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257.5-2 [151 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libapt-pkg7.0 amd64 3.0.0 [1112 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 sqv amd64 1.3.0-1 [661 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 apt amd64 3.0.0 [1450 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.41-3 [112 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.17.4-1 [186 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.17.4-1 [1226 kB] Fetched 11.4 MB in 0s (106 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4907 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41-3_amd64.deb ... Unpacking bsdutils (1:2.41-3) over (1:2.40.4-5) ... Setting up bsdutils (1:2.41-3) ... Selecting previously unselected package libsqlite3-0:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4922 files and directories currently installed.) Preparing to unpack .../libmount1_2.41-3_amd64.deb ... Unpacking libmount1:amd64 (2.41-3) over (2.40.4-5) ... Setting up libmount1:amd64 (2.41-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4922 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41-3_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41-3) over (2.40.4-5) ... Setting up libsmartcols1:amd64 (2.41-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4922 files and directories currently installed.) Preparing to unpack .../util-linux_2.41-3_amd64.deb ... Unpacking util-linux (2.41-3) over (2.40.4-5) ... Setting up util-linux (2.41-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4921 files and directories currently installed.) Preparing to unpack .../mount_2.41-3_amd64.deb ... Unpacking mount (2.41-3) over (2.40.4-5) ... Preparing to unpack .../liblzma5_5.8.1-1_amd64.deb ... Unpacking liblzma5:amd64 (5.8.1-1) over (5.6.4-1) ... Setting up liblzma5:amd64 (5.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4921 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.5.0-1_amd64.deb ... Unpacking openssl-provider-legacy (3.5.0-1) over (3.4.1-1) ... Setting up openssl-provider-legacy (3.5.0-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4920 files and directories currently installed.) Preparing to unpack .../archives/sqv_1.3.0-1_amd64.deb ... Unpacking sqv (1.3.0-1) over (1.2.1-6+b1) ... Setting up sqv (1.3.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4919 files and directories currently installed.) Preparing to unpack .../archives/apt_3.0.0_amd64.deb ... Unpacking apt (3.0.0) over (2.9.35) ... Setting up apt (3.0.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4919 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41-3_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41-3) over (1:4.16.0-2+really2.40.4-5) ... Preparing to unpack .../login.defs_1%3a4.17.4-1_all.deb ... Unpacking login.defs (1:4.17.4-1) over (1:4.17.3-3) ... Preparing to unpack .../passwd_1%3a4.17.4-1_amd64.deb ... Unpacking passwd (1:4.17.4-1) over (1:4.17.3-3) ... Setting up login.defs (1:4.17.4-1) ... Setting up passwd (1:4.17.4-1) ... Setting up mount (2.41-3) ... Setting up login (1:4.16.0-2+really2.41-3) ... Processing triggers for libc-bin (2.41-6) ... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s DUMP: 3e03dfb8ca45194a071563f250614ea7 - 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s INFO: Running scripts post_setup 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_dummy_users'] 0m8.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_dummy_users'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_forbid_home'] 0m8.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_forbid_home'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.1s DUMP: install ok installed apt apt 3.0.0 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-1.1+b2 install ok installed bsdutils bsdutils 1:2.41-3 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-3 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-3 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2 install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.5-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.5-2 install ok installed libuuid1:amd64 libuuid1 2.41-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-3 install ok installed login.defs login.defs 1:4.17.4-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1 install ok installed passwd passwd 1:4.17.4-1 install ok installed perl-base perl-base 5.40.1-2 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-1 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m8.4s INFO: Running scripts is_testable 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s INFO: Running scripts pre_test 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_test_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_test_exceptions'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_test_root_password'] 0m8.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_test_root_password'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'show', '--no-all-versions', 'ncbi-entrez-direct'] 0m8.8s DUMP: Package: ncbi-entrez-direct Source: ncbi-entrez-direct (19.2.20230331+dfsg-3) Version: 19.2.20230331+dfsg-3+b6 Installed-Size: 29465 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: curl | wget, libc6 (>= 2.34) Recommends: python3:any Suggests: curl, libxml-simple-perl, libxml2-utils, unzip, perl:any Description-en: NCBI Entrez utilities on the command line Entrez Direct (EDirect) is an advanced method for accessing NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a terminal window or script. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process. . EDirect also provides an argument-driven function that simplifies the extraction of data from document summaries or other results that are returned in structured XML format. This can eliminate the need for writing custom software to answer ad hoc questions. Queries can move seamlessly between EDirect commands and UNIX utilities or scripts to perform actions that cannot be accomplished entirely within Entrez. Description-md5: 10c6a6866d4021f4e8969018b2d1adbc Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/books/NBK179288 Built-Using: golang-1.24 (= 1.24.1-1), golang-github-dataence-porter2 (= 0.0~git20150829.56e4718-5), golang-github-fatih-color (= 1.17.0-1), golang-github-gedex-inflector (= 0.0~git20170307.0.16278e9-1.1), golang-github-gin-contrib-sse (= 0.1.0-2), golang-github-gin-gonic-gin (= 1.8.1-2), golang-github-go-playground-locales (= 0.14.0-3), golang-github-go-playground-universal-translator (= 0.17.0-2), golang-github-go-playground-validator-v10 (= 10.4.1-4), golang-github-klauspost-compress (= 1.18.0+ds1-1), golang-github-klauspost-cpuid (= 2.2.10-1), golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-leodido-go-urn (= 1.2.1-3), golang-github-mattn-go-colorable (= 0.1.13-1), golang-github-mattn-go-isatty (= 0.0.20-1), golang-github-pelletier-go-toml.v2 (= 2.2.1-1), golang-github-shirou-gopsutil (= 4.25.2-1), golang-github-ugorji-go-codec (= 1.2.8-1), golang-go.crypto (= 1:0.25.0-1), golang-golang-x-net (= 1:0.27.0-1), golang-golang-x-sys (= 0.22.0-1), golang-golang-x-text (= 0.22.0-1), golang-google-protobuf (= 1.36.5-1), golang-yaml.v2 (= 2.4.0-5) Section: science Priority: optional Filename: pool/main/n/ncbi-entrez-direct/ncbi-entrez-direct_19.2.20230331+dfsg-3+b6_amd64.deb Size: 7329628 MD5sum: ddde3163cdeeebea17f7bc4a523f79b1 SHA256: 2e517cf312f4384164e49212cf859aaa541de8b3aedc9315a69a9d9c67932cd6 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'show', '--no-all-versions', 'ncbi-entrez-direct'] 0m8.8s INFO: apt-cache knows about the following packages: ncbi-entrez-direct 0m8.8s INFO: Running scripts pre_install 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy'] 0m8.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy', 'ncbi-entrez-direct'] 0m9.0s DUMP: ncbi-entrez-direct: Installed: (none) Candidate: 19.2.20230331+dfsg-3+b6 Version table: 19.2.20230331+dfsg-3+b6 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy', 'ncbi-entrez-direct'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', '-y', 'install', 'ncbi-entrez-direct'] 0m11.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: curl libbrotli1 libcom-err2 libcurl3t64-gnutls libffi8 libgnutls30t64 libgssapi-krb5-2 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libp11-kit0 libpsl5t64 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1t64 libtasn1-6 libunistring5 Suggested packages: gnutls-bin krb5-doc krb5-user libxml-simple-perl libxml2-utils unzip perl:any Recommended packages: ca-certificates krb5-locales libldap-common publicsuffix libsasl2-modules python3:any The following NEW packages will be installed: curl libbrotli1 libcom-err2 libcurl3t64-gnutls libffi8 libgnutls30t64 libgssapi-krb5-2 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libp11-kit0 libpsl5t64 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1t64 libtasn1-6 libunistring5 ncbi-entrez-direct 0 upgraded, 26 newly installed, 0 to remove and 0 not upgraded. Need to get 12.4 MB of archives. After this operation, 45.3 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.13.0-1 [374 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 curl amd64 8.13.0-1 [269 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 ncbi-entrez-direct amd64 19.2.20230331+dfsg-3+b6 [7330 kB] Fetched 12.4 MB in 0s (78.8 MB/s) Selecting previously unselected package libbrotli1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4931 files and directories currently installed.) Preparing to unpack .../00-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../01-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../02-libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../04-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../05-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../06-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../07-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../08-libcom-err2_1.47.2-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../09-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../10-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../11-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../12-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../13-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../14-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../15-libldap2_2.6.9+dfsg-2_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../16-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../17-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../18-libngtcp2-16_1.11.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../19-libngtcp2-crypto-gnutls8_1.11.0-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../20-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../21-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../22-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../23-libcurl3t64-gnutls_8.13.0-1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.13.0-1) ... Selecting previously unselected package curl. Preparing to unpack .../24-curl_8.13.0-1_amd64.deb ... Unpacking curl (8.13.0-1) ... Selecting previously unselected package ncbi-entrez-direct. Preparing to unpack .../25-ncbi-entrez-direct_19.2.20230331+dfsg-3+b6_amd64.deb ... Adding 'diversion of /usr/bin/efetch to /usr/bin/efetch.acedb by ncbi-entrez-direct' Adding 'diversion of /usr/share/man/man1/efetch.1.gz to /usr/share/man/man1/efetch.acedb.1.gz by ncbi-entrez-direct' Adding 'diversion of /usr/bin/einfo to /usr/bin/einfo.epub by ncbi-entrez-direct' Adding 'diversion of /usr/share/man/man1/einfo.1.gz to /usr/share/man/man1/einfo.epub.1.gz by ncbi-entrez-direct' Unpacking ncbi-entrez-direct (19.2.20230331+dfsg-3+b6) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libcom-err2:amd64 (1.47.2-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libcurl3t64-gnutls:amd64 (8.13.0-1) ... Setting up curl (8.13.0-1) ... Setting up ncbi-entrez-direct (19.2.20230331+dfsg-3+b6) ... Processing triggers for libc-bin (2.41-6) ... 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', '-y', 'install', 'ncbi-entrez-direct'] 0m11.3s INFO: Running scripts post_install 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_install_exceptions'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_install_exceptions'] 0m11.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m11.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m11.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpa98j37kb to sid 0m11.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m11.8s INFO: Running scripts pre_distupgrade 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', 'update'] 0m14.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7415 kB] Fetched 17.8 MB in 2s (8627 kB/s) Reading package lists... 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', 'update'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', '-yf', 'dist-upgrade'] 0m18.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash bsdutils coreutils debian-archive-keyring libblkid1 libcap2 libdebconfclient0 libkeyutils1 liblastlog2-2 libmount1 libsmartcols1 libsqlite3-0 libuuid1 login mount ncbi-entrez-direct util-linux 17 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 16.4 MB of archives. After this operation, 3128 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.37-2 [1500 kB] Get:2 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41-4 [110 kB] Get:3 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.7-1 [3012 kB] Get:4 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41-4 [28.4 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41-4 [37.6 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41-4 [171 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41-4 [209 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41-4 [143 kB] Get:9 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41-4 [1234 kB] Get:10 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41-4 [162 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-3 [913 kB] Get:12 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41-4 [112 kB] Get:13 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2025.1 [179 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.75-5 [28.0 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.278 [10.5 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-5 [9316 B] Get:17 http://deb.debian.org/debian sid/main amd64 ncbi-entrez-direct amd64 23.8.20250410+dfsg-1 [8494 kB] Fetched 16.4 MB in 0s (150 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5404 files and directories currently installed.) Preparing to unpack .../bash_5.2.37-2_amd64.deb ... Unpacking bash (5.2.37-2) over (5.2.37-1.1+b2) ... Setting up bash (5.2.37-2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5403 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41-4_amd64.deb ... Unpacking bsdutils (1:2.41-4) over (1:2.41-3) ... Setting up bsdutils (1:2.41-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5403 files and directories currently installed.) Preparing to unpack .../coreutils_9.7-1_amd64.deb ... Unpacking coreutils (9.7-1) over (9.5-1+b1) ... Setting up coreutils (9.7-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5402 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41-4_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41-4) over (2.41-3) ... Setting up liblastlog2-2:amd64 (2.41-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5402 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41-4_amd64.deb ... Unpacking libuuid1:amd64 (2.41-4) over (2.41-3) ... Setting up libuuid1:amd64 (2.41-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5402 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41-4_amd64.deb ... Unpacking libblkid1:amd64 (2.41-4) over (2.41-3) ... Setting up libblkid1:amd64 (2.41-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5402 files and directories currently installed.) Preparing to unpack .../libmount1_2.41-4_amd64.deb ... Unpacking libmount1:amd64 (2.41-4) over (2.41-3) ... Setting up libmount1:amd64 (2.41-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5402 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41-4_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41-4) over (2.41-3) ... Setting up libsmartcols1:amd64 (2.41-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5402 files and directories currently installed.) Preparing to unpack .../util-linux_2.41-4_amd64.deb ... Unpacking util-linux (2.41-4) over (2.41-3) ... Setting up util-linux (2.41-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5402 files and directories currently installed.) Preparing to unpack .../mount_2.41-4_amd64.deb ... Unpacking mount (2.41-4) over (2.41-3) ... Preparing to unpack .../libsqlite3-0_3.46.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-3) over (3.46.1-2) ... Setting up libsqlite3-0:amd64 (3.46.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5402 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41-4_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41-4) over (1:4.16.0-2+really2.41-3) ... Preparing to unpack .../debian-archive-keyring_2025.1_all.deb ... Unpacking debian-archive-keyring (2025.1) over (2023.4) ... Setting up debian-archive-keyring (2025.1) ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-stable.asc ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.asc ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-automatic.asc ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5414 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.75-5_amd64.deb ... Unpacking libcap2:amd64 (1:2.75-5) over (1:2.75-4) ... Setting up libcap2:amd64 (1:2.75-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5414 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.278_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.278) over (0.277) ... Setting up libdebconfclient0:amd64 (0.278) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5414 files and directories currently installed.) Preparing to unpack .../libkeyutils1_1.6.3-5_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-5) over (1.6.3-4) ... Preparing to unpack .../ncbi-entrez-direct_23.8.20250410+dfsg-1_amd64.deb ... rm: cannot remove '/usr/lib/python3/dist-packages/__pycache__/edirect.*': No such file or directory Leaving 'diversion of /usr/bin/efetch to /usr/bin/efetch.acedb by ncbi-entrez-direct' Leaving 'diversion of /usr/share/man/man1/efetch.1.gz to /usr/share/man/man1/efetch.acedb.1.gz by ncbi-entrez-direct' Leaving 'diversion of /usr/bin/einfo to /usr/bin/einfo.epub by ncbi-entrez-direct' Leaving 'diversion of /usr/share/man/man1/einfo.1.gz to /usr/share/man/man1/einfo.epub.1.gz by ncbi-entrez-direct' Unpacking ncbi-entrez-direct (23.8.20250410+dfsg-1) over (19.2.20230331+dfsg-3+b6) ... Setting up libkeyutils1:amd64 (1.6.3-5) ... Setting up ncbi-entrez-direct (23.8.20250410+dfsg-1) ... Setting up mount (2.41-4) ... Setting up login (1:4.16.0-2+really2.41-4) ... Processing triggers for debianutils (5.21) ... Processing triggers for libc-bin (2.41-6) ... 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', '-yf', 'dist-upgrade'] 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m18.4s DUMP: 37248faae3eff104f1db634029f091e1 - 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'show', '--no-all-versions', 'ncbi-entrez-direct'] 0m18.7s DUMP: Package: ncbi-entrez-direct Version: 23.8.20250410+dfsg-1 Installed-Size: 32024 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: curl | wget, libc6 (>= 2.34) Recommends: python3:any Suggests: curl, golang-any, libxml-simple-perl, libxml2-utils, unzip, perl:any Description-en: NCBI Entrez utilities on the command line Entrez Direct (EDirect) is an advanced method for accessing NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a terminal window or script. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process. . EDirect also provides an argument-driven function that simplifies the extraction of data from document summaries or other results that are returned in structured XML format. This can eliminate the need for writing custom software to answer ad hoc questions. Queries can move seamlessly between EDirect commands and UNIX utilities or scripts to perform actions that cannot be accomplished entirely within Entrez. Description-md5: 10c6a6866d4021f4e8969018b2d1adbc Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/books/NBK179288 Built-Using: golang-1.24 (= 1.24.2-1), golang-github-dataence-porter2 (= 0.0~git20150829.56e4718-5), golang-github-fatih-color (= 1.17.0-1), golang-github-gedex-inflector (= 0.0~git20170307.0.16278e9-1.1), golang-github-gin-contrib-sse (= 0.1.0-2), golang-github-gin-gonic-gin (= 1.8.1-2), golang-github-go-playground-locales (= 0.14.0-3), golang-github-go-playground-universal-translator (= 0.17.0-2), golang-github-go-playground-validator-v10 (= 10.4.1-4), golang-github-goccy-go-yaml (= 1.9.5-2), golang-github-klauspost-compress (= 1.18.0+ds1-1), golang-github-klauspost-cpuid (= 2.2.10-1), golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-komkom-toml (= 0.0~git20211215.3c8ee9d-2), golang-github-leodido-go-urn (= 1.2.1-3), golang-github-mattn-go-colorable (= 0.1.13-1), golang-github-mattn-go-isatty (= 0.0.20-1), golang-github-pelletier-go-toml.v2 (= 2.2.1-1), golang-github-pkg-errors (= 0.9.1-3), golang-github-shirou-gopsutil (= 4.25.2-1), golang-github-ugorji-go-codec (= 1.2.8-1), golang-go.crypto (= 1:0.25.0-1), golang-golang-x-net (= 1:0.27.0-1), golang-golang-x-sys (= 0.22.0-1), golang-golang-x-text (= 0.22.0-1), golang-golang-x-xerrors (= 0.0~git20231012.104605a-1), golang-google-protobuf (= 1.36.5-1), golang-yaml.v2 (= 2.4.0-5) Section: science Priority: optional Filename: pool/main/n/ncbi-entrez-direct/ncbi-entrez-direct_23.8.20250410+dfsg-1_amd64.deb Size: 8493892 MD5sum: fd3c5bcadda5b873a1ecf1dc132730a6 SHA256: cd766a230c4c5b599b99b95d07e8669f2357dfdb7655d83e9ba9482cd5a6b1e1 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'show', '--no-all-versions', 'ncbi-entrez-direct'] 0m18.7s INFO: apt-cache knows about the following packages: ncbi-entrez-direct 0m18.7s INFO: Running scripts pre_install 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_database-server'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_database-server'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_exceptions'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_exceptions'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_extras'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_extras'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy'] 0m18.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy', 'ncbi-entrez-direct'] 0m18.8s DUMP: ncbi-entrez-direct: Installed: 23.8.20250410+dfsg-1 Candidate: 23.8.20250410+dfsg-1 Version table: *** 23.8.20250410+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy', 'ncbi-entrez-direct'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', '-y', 'install', 'ncbi-entrez-direct'] 0m19.6s DUMP: Reading package lists... Building dependency tree... Reading state information... ncbi-entrez-direct is already the newest version (23.8.20250410+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', '-y', 'install', 'ncbi-entrez-direct'] 0m19.6s INFO: Running scripts post_install 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_install_exceptions'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_install_exceptions'] 0m19.6s INFO: Running scripts post_distupgrade 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_distupgrade_exceptions'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_distupgrade_exceptions'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_distupgrade_zz_backports'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_distupgrade_zz_backports'] 0m19.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m20.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m20.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m20.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m20.8s INFO: Running scripts pre_install 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_database-server'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_database-server'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_exceptions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_exceptions'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_extras'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_extras'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy'] 0m20.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy', 'ncbi-entrez-direct'] 0m21.0s DUMP: ncbi-entrez-direct: Installed: 23.8.20250410+dfsg-1 Candidate: 23.8.20250410+dfsg-1 Version table: *** 23.8.20250410+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-cache', 'policy', 'ncbi-entrez-direct'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', '-y', 'install', 'ncbi-entrez-direct=23.8.20250410+dfsg-1'] 0m21.7s DUMP: Reading package lists... Building dependency tree... Reading state information... ncbi-entrez-direct is already the newest version (23.8.20250410+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', '-y', 'install', 'ncbi-entrez-direct=23.8.20250410+dfsg-1'] 0m21.7s INFO: Running scripts post_install 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_install_exceptions'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_install_exceptions'] 0m21.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m22.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m22.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', '-ac', '--ignore-obsolete'] 0m22.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', '-ac', '--ignore-obsolete'] 0m22.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m22.9s DUMP: 0.15.6 0m22.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m22.9s INFO: Running adequate version 0.15.6 now. 0m22.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'ncbi-entrez-direct'] 0m23.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'ncbi-entrez-direct'] 0m23.9s INFO: Running scripts pre_remove 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_exceptions'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/pre_remove_exceptions'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.0s DUMP: install ok installed apt apt 3.0.0 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2 install ok installed bsdutils bsdutils 1:2.41-4 install ok installed coreutils coreutils 9.7-1 install ok installed curl curl 8.13.0-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-3 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-4 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.13.0-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-5 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-4 install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.11.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.11.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-3 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.5-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.5-2 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed libuuid1:amd64 libuuid1 2.41-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-4 install ok installed login.defs login.defs 1:4.17.4-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-4 install ok installed ncbi-entrez-direct ncbi-entrez-direct 23.8.20250410+dfsg-1 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1 install ok installed passwd passwd 1:4.17.4-1 install ok installed perl-base perl-base 5.40.1-2 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-1 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', 'remove', '--allow-remove-essential', 'curl', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'ncbi-entrez-direct'] 0m26.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: curl libbrotli1 libcom-err2 libcurl3t64-gnutls libffi8 libgnutls30t64 libgssapi-krb5-2 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libp11-kit0 libpsl5t64 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1t64 libtasn1-6 libunistring5 ncbi-entrez-direct 0 upgraded, 0 newly installed, 26 to remove and 0 not upgraded. After this operation, 47.9 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5418 files and directories currently installed.) Removing ncbi-entrez-direct (23.8.20250410+dfsg-1) ... rm: cannot remove '/usr/lib/python3/dist-packages/__pycache__/edirect.*': No such file or directory Removing 'diversion of /usr/bin/efetch to /usr/bin/efetch.acedb by ncbi-entrez-direct' Removing 'diversion of /usr/share/man/man1/efetch.1.gz to /usr/share/man/man1/efetch.acedb.1.gz by ncbi-entrez-direct' Removing 'diversion of /usr/bin/einfo to /usr/bin/einfo.epub by ncbi-entrez-direct' Removing 'diversion of /usr/share/man/man1/einfo.1.gz to /usr/share/man/man1/einfo.epub.1.gz by ncbi-entrez-direct' Removing curl (8.13.0-1) ... Removing libcurl3t64-gnutls:amd64 (8.13.0-1) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libcom-err2:amd64 (1.47.2-1+b1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Removing libgnutls30t64:amd64 (3.8.9-2) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libffi8:amd64 (3.4.7-1) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.8-2) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-5) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Removing libldap2:amd64 (2.6.9+dfsg-2) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libnghttp3-9:amd64 (1.8.0-1) ... Removing libngtcp2-16:amd64 (1.11.0-1) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libunistring5:amd64 (1.3-2) ... Processing triggers for libc-bin (2.41-6) ... 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', 'remove', '--allow-remove-essential', 'curl', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'ncbi-entrez-direct'] 0m26.2s INFO: Running scripts post_remove 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_remove_exceptions'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_remove_exceptions'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg', '--purge', 'curl', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64'] 0m26.3s DUMP: dpkg: warning: ignoring request to remove curl which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed (Reading database ... 4941 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-16 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg', '--purge', 'curl', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg', '--purge', 'ncbi-entrez-direct'] 0m26.3s DUMP: (Reading database ... 4941 files and directories currently installed.) Purging configuration files for ncbi-entrez-direct (23.8.20250410+dfsg-1) ... 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg', '--purge', 'ncbi-entrez-direct'] 0m26.3s INFO: Running scripts post_purge 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_purge_exceptions'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_purge_exceptions'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg', '--purge', '--pending'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg', '--purge', '--pending'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg', '--remove', '--pending'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg', '--remove', '--pending'] 0m26.3s INFO: Running scripts post_test 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_test_exceptions'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'tmp/scripts/post_test_exceptions'] 0m26.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m26.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg-divert', '--list'] 0m26.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'dpkg-divert', '--list'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', 'clean'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa98j37kb', 'apt-get', 'clean'] 0m26.7s DEBUG: Recording chroot state 0m27.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/shm'] 0m27.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/shm'] 0m27.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/console'] 0m27.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/console'] 0m27.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/ptmx'] 0m27.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/ptmx'] 0m27.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/pts'] 0m27.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/dev/pts'] 0m27.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/proc'] 0m27.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa98j37kb/proc'] 0m27.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m28.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpa98j37kb'] 0m28.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpa98j37kb 0m28.0s INFO: PASS: Upgrading between Debian distributions. 0m28.0s INFO: PASS: All tests. 0m28.0s INFO: piuparts run ends. ret=0 End: 2025-04-11 09:28:44 GMT