Start: 2022-03-10 09:01:47 GMT [testing] Package: pbdagcon Version: 0.3+git20180411.c14c422+dfsg-6 Installed-Size: 1294 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libblasr5.3.5 (>= 5.3.5+dfsg), libc6 (>= 2.33), libgcc-s1 (>= 3.4), libstdc++6 (>= 11), libpbseq (>= 5.3.3) Suggests: blasr Description: sequence consensus using directed acyclic graphs Homepage: https://github.com/PacificBiosciences/pbdagcon Description-md5: 95465f5fc6fbaa2db477a48c78b7cd82 Section: science Priority: optional Filename: pool/main/p/pbdagcon/pbdagcon_0.3+git20180411.c14c422+dfsg-6_amd64.deb Size: 354980 MD5sum: c6ad731dc6c94a3d650e5c2239f2df60 SHA256: f96ecc587b67be49a399b78a2df6185c8b973be83093f9a42a63542ed282e608 [sid] Package: pbdagcon Version: 0.3+git20180411.c14c422+dfsg-8 Installed-Size: 1294 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libblasr5.3.5 (>= 5.3.5+dfsg), libc6 (>= 2.33), libgcc-s1 (>= 3.4), libstdc++6 (>= 12), libpbseq (>= 5.3.5+dfsg-4~) Suggests: blasr Description: sequence consensus using directed acyclic graphs Homepage: https://github.com/PacificBiosciences/pbdagcon Description-md5: 95465f5fc6fbaa2db477a48c78b7cd82 Section: science Priority: optional Filename: pool/main/p/pbdagcon/pbdagcon_0.3+git20180411.c14c422+dfsg-8_amd64.deb Size: 355428 MD5sum: cfe3edd0255deacca82e6203f5dee005 SHA256: 14cab14b7c7608dde76c39b728175e3c4acbe6f49fca9b11a3f7cb3a57704cca Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt pbdagcon=0.3+git20180411.c14c422+dfsg-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt pbdagcon=0.3+git20180411.c14c422+dfsg-8 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-19-amd64 #1 SMP Debian 4.19.232-1 (2022-03-07) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpz7gr_1cf 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpz7gr_1cf 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpz7gr_1cf/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', 'update'] 0m4.5s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [130 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8372 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5722 kB] Fetched 14.2 MB in 2s (7190 kB/s) Reading package lists... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', 'update'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', '-yf', 'dist-upgrade'] 0m6.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: gcc-12-base The following packages will be upgraded: adduser apt libapt-pkg6.0 libgcc-s1 libstdc++6 login passwd 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 5191 kB of archives. After this operation, 300 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 login amd64 1:4.11.1+dfsg1-2 [616 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 gcc-12-base amd64 12-20220302-1 [206 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgcc-s1 amd64 12-20220302-1 [50.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libstdc++6 amd64 12-20220302-1 [617 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libapt-pkg6.0 amd64 2.4.1 [1028 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 passwd amd64 1:4.11.1+dfsg1-2 [947 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 adduser all 3.120 [232 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 apt amd64 2.4.1 [1495 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5191 kB in 0s (64.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6684 files and directories currently installed.) Preparing to unpack .../login_1%3a4.11.1+dfsg1-2_amd64.deb ... Unpacking login (1:4.11.1+dfsg1-2) over (1:4.11.1+dfsg1-1) ... Setting up login (1:4.11.1+dfsg1-2) ... Installing new version of config file /etc/login.defs ... Selecting previously unselected package gcc-12-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6684 files and directories currently installed.) Preparing to unpack .../gcc-12-base_12-20220302-1_amd64.deb ... Unpacking gcc-12-base:amd64 (12-20220302-1) ... Setting up gcc-12-base:amd64 (12-20220302-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6689 files and directories currently installed.) Preparing to unpack .../libgcc-s1_12-20220302-1_amd64.deb ... Unpacking libgcc-s1:amd64 (12-20220302-1) over (11.2.0-16) ... Setting up libgcc-s1:amd64 (12-20220302-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6689 files and directories currently installed.) Preparing to unpack .../libstdc++6_12-20220302-1_amd64.deb ... Unpacking libstdc++6:amd64 (12-20220302-1) over (11.2.0-16) ... Setting up libstdc++6:amd64 (12-20220302-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6689 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.4.1_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.4.1) over (2.4.0) ... Setting up libapt-pkg6.0:amd64 (2.4.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6689 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.11.1+dfsg1-2_amd64.deb ... Unpacking passwd (1:4.11.1+dfsg1-2) over (1:4.11.1+dfsg1-1) ... Setting up passwd (1:4.11.1+dfsg1-2) ... Installing new version of config file /etc/default/useradd ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6689 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.120_all.deb ... Unpacking adduser (3.120) over (3.118) ... Setting up adduser (3.120) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6686 files and directories currently installed.) Preparing to unpack .../archives/apt_2.4.1_amd64.deb ... Unpacking apt (2.4.1) over (2.4.0) ... Setting up apt (2.4.1) ... Processing triggers for libc-bin (2.33-7) ... 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', '-yf', 'dist-upgrade'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.5s DUMP: 1cad9f5d46e137241ab5499dd98d3ac1 - 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.5s INFO: Running scripts post_setup 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_dummy_users'] 0m8.2s DUMP: useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_dummy_users'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_minimize'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_minimize'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_zz_backports'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_setup_zz_backports'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DUMP: install ok installed adduser adduser 3.120 install ok installed apt apt 2.4.1 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.3-1+b1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-7 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-2 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-14 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-16 install ok installed gcc-12-base:amd64 gcc-12-base 12-20220302-1 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.62 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.4.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1 install ok installed libblkid1:amd64 libblkid1 2.37.3-1+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-7 install ok installed libc6:amd64 libc6 2.33-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12-20220302-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.3-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.19.2-2 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.19.2-2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.19.2-2 install ok installed libkrb5support0:amd64 libkrb5support0 1.19.2-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.3-1+b1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.3-1+b1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 12-20220302-1 install ok installed libsystemd0:amd64 libsystemd0 250.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.3-2 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.37.3-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-3+b1 install ok installed mount mount 2.37.3-1+b1 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-3 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.3-1+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m8.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m8.6s INFO: Running scripts is_testable 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/is_testable_uninstallable'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/is_testable_uninstallable'] 0m8.6s INFO: Running scripts pre_test 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_test_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_test_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_test_root_password'] 0m8.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_test_root_password'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'show', '--no-all-versions', 'pbdagcon'] 0m8.8s DUMP: Package: pbdagcon Version: 0.3+git20180411.c14c422+dfsg-6 Installed-Size: 1294 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libblasr5.3.5 (>= 5.3.5+dfsg), libc6 (>= 2.33), libgcc-s1 (>= 3.4), libstdc++6 (>= 11), libpbseq (>= 5.3.3) Suggests: blasr Description-en: sequence consensus using directed acyclic graphs pbdagcon is a tool that implements DAGCon (Directed Acyclic Graph Consensus) which is a sequence consensus algorithm based on using directed acyclic graphs to encode multiple sequence alignment. . It uses the alignment information from blasr to align sequence reads to a "backbone" sequence. Based on the underlying alignment directed acyclic graph (DAG), it will be able to use the new information from the reads to find the discrepancies between the reads and the "backbone" sequences. A dynamic programming process is then applied to the DAG to find the optimum sequence of bases as the consensus. The new consensus can be used as a new backbone sequence to iteratively improve the consensus quality. . While the code is developed for processing PacBio(TM) raw sequence data, the algorithm can be used for general consensus purpose. Currently, it only takes FASTA input. For shorter read sequences, one might need to adjust the blasr alignment parameters to get the alignment string properly. . The code and the underlying graphical data structure have been used for some algorithm development prototyping including phasing reads and pre-assembly. Description-md5: 95465f5fc6fbaa2db477a48c78b7cd82 Homepage: https://github.com/PacificBiosciences/pbdagcon Section: science Priority: optional Filename: pool/main/p/pbdagcon/pbdagcon_0.3+git20180411.c14c422+dfsg-6_amd64.deb Size: 354980 MD5sum: c6ad731dc6c94a3d650e5c2239f2df60 SHA256: f96ecc587b67be49a399b78a2df6185c8b973be83093f9a42a63542ed282e608 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'show', '--no-all-versions', 'pbdagcon'] 0m8.8s INFO: apt-cache knows about the following packages: pbdagcon 0m8.8s INFO: Running scripts pre_install 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy'] 0m8.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy', 'pbdagcon'] 0m8.9s DUMP: pbdagcon: Installed: (none) Candidate: 0.3+git20180411.c14c422+dfsg-6 Version table: 0.3+git20180411.c14c422+dfsg-6 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy', 'pbdagcon'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', '-y', 'install', 'pbdagcon'] 0m10.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libaec0 libblasr5.3.5 libbrotli1 libcurl3-gnutls libcurl4 libdeflate0 libhdf5-103-1 libhdf5-cpp-103-1 libhts3 libhtscodecs2 libldap-2.4-2 libnghttp2-14 libpbbam1.6.0 libpbcopper1.9.3 libpbseq libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libsz2 Suggested packages: blasr Recommended packages: ca-certificates libldap-common publicsuffix libsasl2-modules The following NEW packages will be installed: libaec0 libblasr5.3.5 libbrotli1 libcurl3-gnutls libcurl4 libdeflate0 libhdf5-103-1 libhdf5-cpp-103-1 libhts3 libhtscodecs2 libldap-2.4-2 libnghttp2-14 libpbbam1.6.0 libpbcopper1.9.3 libpbseq libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libsz2 pbdagcon 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 6418 kB of archives. After this operation, 19.4 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1 [20.3 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b3 [276 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-2 [74.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-2 [111 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libldap-2.4-2 amd64 2.4.59+dfsg-1+b1 [233 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3 [178 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.81.0-1 [358 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1 [7492 B] Get:12 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.7+repack-4 [1236 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libhdf5-cpp-103-1 amd64 1.10.7+repack-4 [145 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.81.0-1 [353 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.8-1 [53.1 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.2.1-1 [53.4 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.13+ds-2 [395 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libpbcopper1.9.3 amd64 1.9.3+dfsg-2 [595 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libpbbam1.6.0 amd64 1.6.0+dfsg-2+b1 [682 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libblasr5.3.5 amd64 5.3.5+dfsg-2+b1 [1091 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libpbseq amd64 5.3.5+dfsg-2+b1 [5624 B] Get:22 http://deb.debian.org/debian bookworm/main amd64 pbdagcon amd64 0.3+git20180411.c14c422+dfsg-6 [355 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6418 kB in 0s (66.9 MB/s) Selecting previously unselected package libaec0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6688 files and directories currently installed.) Preparing to unpack .../00-libaec0_1.0.6-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.6-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../01-libbrotli1_1.0.9-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../02-libsasl2-modules-db_2.1.28+dfsg-2_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-2) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../03-libsasl2-2_2.1.28+dfsg-2_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-2) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../04-libldap-2.4-2_2.4.59+dfsg-1+b1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.59+dfsg-1+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../05-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../06-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../07-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../08-libssh2-1_1.10.0-3_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../09-libcurl4_7.81.0-1_amd64.deb ... Unpacking libcurl4:amd64 (7.81.0-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../10-libsz2_1.0.6-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.6-1) ... Selecting previously unselected package libhdf5-103-1:amd64. Preparing to unpack .../11-libhdf5-103-1_1.10.7+repack-4_amd64.deb ... Unpacking libhdf5-103-1:amd64 (1.10.7+repack-4) ... Selecting previously unselected package libhdf5-cpp-103-1:amd64. Preparing to unpack .../12-libhdf5-cpp-103-1_1.10.7+repack-4_amd64.deb ... Unpacking libhdf5-cpp-103-1:amd64 (1.10.7+repack-4) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../13-libcurl3-gnutls_7.81.0-1_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.81.0-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../14-libdeflate0_1.8-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.8-1) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../15-libhtscodecs2_1.2.1-1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.2.1-1) ... Selecting previously unselected package libhts3:amd64. Preparing to unpack .../16-libhts3_1.13+ds-2_amd64.deb ... Unpacking libhts3:amd64 (1.13+ds-2) ... Selecting previously unselected package libpbcopper1.9.3:amd64. Preparing to unpack .../17-libpbcopper1.9.3_1.9.3+dfsg-2_amd64.deb ... Unpacking libpbcopper1.9.3:amd64 (1.9.3+dfsg-2) ... Selecting previously unselected package libpbbam1.6.0:amd64. Preparing to unpack .../18-libpbbam1.6.0_1.6.0+dfsg-2+b1_amd64.deb ... Unpacking libpbbam1.6.0:amd64 (1.6.0+dfsg-2+b1) ... Selecting previously unselected package libblasr5.3.5:amd64. Preparing to unpack .../19-libblasr5.3.5_5.3.5+dfsg-2+b1_amd64.deb ... Unpacking libblasr5.3.5:amd64 (5.3.5+dfsg-2+b1) ... Selecting previously unselected package libpbseq:amd64. Preparing to unpack .../20-libpbseq_5.3.5+dfsg-2+b1_amd64.deb ... Unpacking libpbseq:amd64 (5.3.5+dfsg-2+b1) ... Selecting previously unselected package pbdagcon. Preparing to unpack .../21-pbdagcon_0.3+git20180411.c14c422+dfsg-6_amd64.deb ... Unpacking pbdagcon (0.3+git20180411.c14c422+dfsg-6) ... Setting up libhtscodecs2:amd64 (1.2.1-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libbrotli1:amd64 (1.0.9-2+b3) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libdeflate0:amd64 (1.8-1) ... Setting up libaec0:amd64 (1.0.6-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-2) ... Setting up libssh2-1:amd64 (1.10.0-3) ... Setting up libpbcopper1.9.3:amd64 (1.9.3+dfsg-2) ... Setting up libsz2:amd64 (1.0.6-1) ... Setting up libldap-2.4-2:amd64 (2.4.59+dfsg-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.81.0-1) ... Setting up libcurl4:amd64 (7.81.0-1) ... Setting up libhts3:amd64 (1.13+ds-2) ... Setting up libhdf5-103-1:amd64 (1.10.7+repack-4) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.7+repack-4) ... Setting up libpbbam1.6.0:amd64 (1.6.0+dfsg-2+b1) ... Setting up libblasr5.3.5:amd64 (5.3.5+dfsg-2+b1) ... Setting up libpbseq:amd64 (5.3.5+dfsg-2+b1) ... Setting up pbdagcon (0.3+git20180411.c14c422+dfsg-6) ... Processing triggers for libc-bin (2.33-7) ... 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', '-y', 'install', 'pbdagcon'] 0m10.5s INFO: Running scripts post_install 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_install_exceptions'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_install_exceptions'] 0m10.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m10.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m10.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpz7gr_1cf to sid 0m10.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m10.8s INFO: Running scripts pre_distupgrade 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', 'update'] 0m14.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9051 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6753 kB] Fetched 16.0 MB in 3s (5511 kB/s) Reading package lists... 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', 'update'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', '-yf', 'dist-upgrade'] 0m15.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libpbbam1.6.0 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libpbbam1.7.0 libpbcopper2.0.0 The following packages will be upgraded: gcc-11-base libblasr5.3.5 libcurl3-gnutls libcurl4 libdeflate0 libpbseq pbdagcon 7 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 3714 kB of archives. After this operation, 4660 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-18 [208 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libpbseq amd64 5.3.5+dfsg-4 [5472 B] Get:3 http://deb.debian.org/debian sid/main amd64 libpbbam1.7.0 amd64 1.7.0+dfsg-2 [672 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libpbcopper2.0.0 amd64 2.0.0+dfsg-2 [606 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libblasr5.3.5 amd64 5.3.5+dfsg-4 [1092 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libcurl3-gnutls amd64 7.82.0-1 [353 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libcurl4 amd64 7.82.0-1 [357 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.10-1 [66.2 kB] Get:9 http://deb.debian.org/debian sid/main amd64 pbdagcon amd64 0.3+git20180411.c14c422+dfsg-8 [355 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3714 kB in 0s (55.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6867 files and directories currently installed.) Preparing to unpack .../0-gcc-11-base_11.2.0-18_amd64.deb ... Unpacking gcc-11-base:amd64 (11.2.0-18) over (11.2.0-16) ... Preparing to unpack .../1-libpbseq_5.3.5+dfsg-4_amd64.deb ... Unpacking libpbseq:amd64 (5.3.5+dfsg-4) over (5.3.5+dfsg-2+b1) ... Selecting previously unselected package libpbbam1.7.0:amd64. Preparing to unpack .../2-libpbbam1.7.0_1.7.0+dfsg-2_amd64.deb ... Unpacking libpbbam1.7.0:amd64 (1.7.0+dfsg-2) ... Selecting previously unselected package libpbcopper2.0.0:amd64. Preparing to unpack .../3-libpbcopper2.0.0_2.0.0+dfsg-2_amd64.deb ... Unpacking libpbcopper2.0.0:amd64 (2.0.0+dfsg-2) ... Preparing to unpack .../4-libblasr5.3.5_5.3.5+dfsg-4_amd64.deb ... Unpacking libblasr5.3.5:amd64 (5.3.5+dfsg-4) over (5.3.5+dfsg-2+b1) ... Preparing to unpack .../5-libcurl3-gnutls_7.82.0-1_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.82.0-1) over (7.81.0-1) ... Preparing to unpack .../6-libcurl4_7.82.0-1_amd64.deb ... Unpacking libcurl4:amd64 (7.82.0-1) over (7.81.0-1) ... Preparing to unpack .../7-libdeflate0_1.10-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.10-1) over (1.8-1) ... Preparing to unpack .../8-pbdagcon_0.3+git20180411.c14c422+dfsg-8_amd64.deb ... Unpacking pbdagcon (0.3+git20180411.c14c422+dfsg-8) over (0.3+git20180411.c14c422+dfsg-6) ... Setting up gcc-11-base:amd64 (11.2.0-18) ... Setting up libpbcopper2.0.0:amd64 (2.0.0+dfsg-2) ... Setting up libdeflate0:amd64 (1.10-1) ... Setting up libcurl3-gnutls:amd64 (7.82.0-1) ... Setting up libcurl4:amd64 (7.82.0-1) ... Setting up libpbbam1.7.0:amd64 (1.7.0+dfsg-2) ... Setting up libblasr5.3.5:amd64 (5.3.5+dfsg-4) ... Setting up libpbseq:amd64 (5.3.5+dfsg-4) ... Setting up pbdagcon (0.3+git20180411.c14c422+dfsg-8) ... Processing triggers for libc-bin (2.33-7) ... 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', '-yf', 'dist-upgrade'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.1s DUMP: a2bf059a0abc814249f9184028602296 - 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'show', '--no-all-versions', 'pbdagcon'] 0m16.3s DUMP: Package: pbdagcon Version: 0.3+git20180411.c14c422+dfsg-8 Installed-Size: 1294 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libblasr5.3.5 (>= 5.3.5+dfsg), libc6 (>= 2.33), libgcc-s1 (>= 3.4), libstdc++6 (>= 12), libpbseq (>= 5.3.5+dfsg-4~) Suggests: blasr Description-en: sequence consensus using directed acyclic graphs pbdagcon is a tool that implements DAGCon (Directed Acyclic Graph Consensus) which is a sequence consensus algorithm based on using directed acyclic graphs to encode multiple sequence alignment. . It uses the alignment information from blasr to align sequence reads to a "backbone" sequence. Based on the underlying alignment directed acyclic graph (DAG), it will be able to use the new information from the reads to find the discrepancies between the reads and the "backbone" sequences. A dynamic programming process is then applied to the DAG to find the optimum sequence of bases as the consensus. The new consensus can be used as a new backbone sequence to iteratively improve the consensus quality. . While the code is developed for processing PacBio(TM) raw sequence data, the algorithm can be used for general consensus purpose. Currently, it only takes FASTA input. For shorter read sequences, one might need to adjust the blasr alignment parameters to get the alignment string properly. . The code and the underlying graphical data structure have been used for some algorithm development prototyping including phasing reads and pre-assembly. Description-md5: 95465f5fc6fbaa2db477a48c78b7cd82 Homepage: https://github.com/PacificBiosciences/pbdagcon Section: science Priority: optional Filename: pool/main/p/pbdagcon/pbdagcon_0.3+git20180411.c14c422+dfsg-8_amd64.deb Size: 355428 MD5sum: cfe3edd0255deacca82e6203f5dee005 SHA256: 14cab14b7c7608dde76c39b728175e3c4acbe6f49fca9b11a3f7cb3a57704cca 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'show', '--no-all-versions', 'pbdagcon'] 0m16.3s INFO: apt-cache knows about the following packages: pbdagcon 0m16.3s INFO: Running scripts pre_install 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_database-server'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_database-server'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_exceptions'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_exceptions'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_extras'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_extras'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy'] 0m16.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy', 'pbdagcon'] 0m16.4s DUMP: pbdagcon: Installed: 0.3+git20180411.c14c422+dfsg-8 Candidate: 0.3+git20180411.c14c422+dfsg-8 Version table: *** 0.3+git20180411.c14c422+dfsg-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy', 'pbdagcon'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', '-y', 'install', 'pbdagcon'] 0m16.8s DUMP: Reading package lists... Building dependency tree... Reading state information... pbdagcon is already the newest version (0.3+git20180411.c14c422+dfsg-8). The following package was automatically installed and is no longer required: libpbbam1.6.0 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', '-y', 'install', 'pbdagcon'] 0m16.8s INFO: Running scripts post_install 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_install_exceptions'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_install_exceptions'] 0m16.8s INFO: Running scripts post_distupgrade 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m17.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m17.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m17.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m17.3s INFO: Running scripts pre_install 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_database-server'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_database-server'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_exceptions'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_extras'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_extras'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy'] 0m17.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy', 'pbdagcon'] 0m17.4s DUMP: pbdagcon: Installed: 0.3+git20180411.c14c422+dfsg-8 Candidate: 0.3+git20180411.c14c422+dfsg-8 Version table: *** 0.3+git20180411.c14c422+dfsg-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-cache', 'policy', 'pbdagcon'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', '-y', 'install', 'pbdagcon=0.3+git20180411.c14c422+dfsg-8'] 0m17.8s DUMP: Reading package lists... Building dependency tree... Reading state information... pbdagcon is already the newest version (0.3+git20180411.c14c422+dfsg-8). The following package was automatically installed and is no longer required: libpbbam1.6.0 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', '-y', 'install', 'pbdagcon=0.3+git20180411.c14c422+dfsg-8'] 0m17.8s INFO: Running scripts post_install 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_install_exceptions'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_install_exceptions'] 0m17.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m18.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m18.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', '-ac', '--ignore-obsolete'] 0m19.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', '-ac', '--ignore-obsolete'] 0m19.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.0s DUMP: 0.15.2 0m19.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.0s INFO: Running adequate version 0.15.2 now. 0m19.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'pbdagcon'] 0m19.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'pbdagcon'] 0m19.1s INFO: Running scripts pre_remove 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_exceptions'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/pre_remove_exceptions'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.0s DUMP: install ok installed adduser adduser 3.120 install ok installed apt apt 2.4.1 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.3-1+b1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-7 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-2 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-14 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-18 install ok installed gcc-12-base:amd64 gcc-12-base 12-20220302-1 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.62 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libaec0:amd64 libaec0 1.0.6-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.4.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1 install ok installed libblasr5.3.5:amd64 libblasr5.3.5 5.3.5+dfsg-4 install ok installed libblkid1:amd64 libblkid1 2.37.3-1+b1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-7 install ok installed libc6:amd64 libc6 2.33-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.82.0-1 install ok installed libcurl4:amd64 libcurl4 7.82.0-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libdeflate0:amd64 libdeflate0 1.10-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12-20220302-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.3-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.19.2-2 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.7+repack-4 install ok installed libhdf5-cpp-103-1:amd64 libhdf5-cpp-103-1 1.10.7+repack-4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhts3:amd64 libhts3 1.13+ds-2 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.2.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.19.2-2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.19.2-2 install ok installed libkrb5support0:amd64 libkrb5support0 1.19.2-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.59+dfsg-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.3-1+b1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpbbam1.6.0:amd64 libpbbam1.6.0 1.6.0+dfsg-2+b1 install ok installed libpbbam1.7.0:amd64 libpbbam1.7.0 1.7.0+dfsg-2 install ok installed libpbcopper1.9.3:amd64 libpbcopper1.9.3 1.9.3+dfsg-2 install ok installed libpbcopper2.0.0:amd64 libpbcopper2.0.0 2.0.0+dfsg-2 install ok installed libpbseq:amd64 libpbseq 5.3.5+dfsg-4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-2 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.3-1+b1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 12-20220302-1 install ok installed libsystemd0:amd64 libsystemd0 250.3-2 install ok installed libsz2:amd64 libsz2 1.0.6-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.3-2 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.37.3-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-3+b1 install ok installed mount mount 2.37.3-1+b1 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed pbdagcon pbdagcon 0.3+git20180411.c14c422+dfsg-8 install ok installed perl-base perl-base 5.34.0-3 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.3-1+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', 'remove', 'libaec0:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libldap-2.4-2:amd64', 'libnghttp2-14:amd64', 'libpbbam1.6.0:amd64', 'libpbbam1.7.0:amd64', 'libpbcopper1.9.3:amd64', 'libpbcopper2.0.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'pbdagcon'] 0m20.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libaec0 libblasr5.3.5 libbrotli1 libcurl3-gnutls libcurl4 libdeflate0 libhdf5-103-1 libhdf5-cpp-103-1 libhts3 libhtscodecs2 libldap-2.4-2 libnghttp2-14 libpbbam1.6.0 libpbbam1.7.0 libpbcopper1.9.3 libpbcopper2.0.0 libpbseq libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libsz2 pbdagcon 0 upgraded, 0 newly installed, 24 to remove and 0 not upgraded. After this operation, 24.0 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6876 files and directories currently installed.) Removing pbdagcon (0.3+git20180411.c14c422+dfsg-8) ... Removing libpbseq:amd64 (5.3.5+dfsg-4) ... Removing libblasr5.3.5:amd64 (5.3.5+dfsg-4) ... Removing libhdf5-cpp-103-1:amd64 (1.10.7+repack-4) ... Removing libhdf5-103-1:amd64 (1.10.7+repack-4) ... Removing libsz2:amd64 (1.0.6-1) ... Removing libaec0:amd64 (1.0.6-1) ... Removing libcurl4:amd64 (7.82.0-1) ... Removing libpbbam1.6.0:amd64 (1.6.0+dfsg-2+b1) ... Removing libpbbam1.7.0:amd64 (1.7.0+dfsg-2) ... Removing libpbcopper1.9.3:amd64 (1.9.3+dfsg-2) ... Removing libpbcopper2.0.0:amd64 (2.0.0+dfsg-2) ... Removing libhts3:amd64 (1.13+ds-2) ... Removing libcurl3-gnutls:amd64 (7.82.0-1) ... Removing libbrotli1:amd64 (1.0.9-2+b3) ... Removing libdeflate0:amd64 (1.10-1) ... Removing libhtscodecs2:amd64 (1.2.1-1) ... Removing libldap-2.4-2:amd64 (2.4.59+dfsg-1+b1) ... Removing libnghttp2-14:amd64 (1.43.0-1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-2) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-2) ... Removing libssh2-1:amd64 (1.10.0-3) ... Processing triggers for libc-bin (2.33-7) ... 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', 'remove', 'libaec0:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libldap-2.4-2:amd64', 'libnghttp2-14:amd64', 'libpbbam1.6.0:amd64', 'libpbbam1.7.0:amd64', 'libpbcopper1.9.3:amd64', 'libpbcopper2.0.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'pbdagcon'] 0m20.6s INFO: Running scripts post_remove 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_remove_exceptions'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_remove_exceptions'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg', '--purge', 'libaec0:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libldap-2.4-2:amd64', 'libnghttp2-14:amd64', 'libpbbam1.6.0:amd64', 'libpbbam1.7.0:amd64', 'libpbcopper1.9.3:amd64', 'libpbcopper2.0.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libsz2:amd64'] 0m20.6s DUMP: dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblasr5.3.5 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-cpp-103-1 which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libpbbam1.6.0 which isn't installed dpkg: warning: ignoring request to remove libpbbam1.7.0 which isn't installed dpkg: warning: ignoring request to remove libpbcopper1.9.3 which isn't installed dpkg: warning: ignoring request to remove libpbcopper2.0.0 which isn't installed dpkg: warning: ignoring request to remove libpbseq which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg', '--purge', 'libaec0:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libldap-2.4-2:amd64', 'libnghttp2-14:amd64', 'libpbbam1.6.0:amd64', 'libpbbam1.7.0:amd64', 'libpbcopper1.9.3:amd64', 'libpbcopper2.0.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libsz2:amd64'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg', '--purge', 'pbdagcon'] 0m20.6s DUMP: dpkg: warning: ignoring request to remove pbdagcon which isn't installed 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg', '--purge', 'pbdagcon'] 0m20.6s INFO: Running scripts post_purge 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_purge_exceptions'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_purge_exceptions'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg', '--purge', '--pending'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg', '--purge', '--pending'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg', '--remove', '--pending'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg', '--remove', '--pending'] 0m20.7s INFO: Running scripts post_test 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_test_exceptions'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'tmp/scripts/post_test_exceptions'] 0m20.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m20.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg-divert', '--list'] 0m20.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'dpkg-divert', '--list'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', 'clean'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf', 'apt-get', 'clean'] 0m21.0s DEBUG: Recording chroot state 0m21.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/shm'] 0m21.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/shm'] 0m21.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/console'] 0m21.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/console'] 0m21.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/ptmx'] 0m21.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/ptmx'] 0m21.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/pts'] 0m21.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/dev/pts'] 0m21.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/proc'] 0m21.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf/proc'] 0m21.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m21.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz7gr_1cf'] 0m21.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpz7gr_1cf 0m21.8s INFO: PASS: Upgrading between Debian distributions. 0m21.8s INFO: PASS: All tests. 0m21.8s INFO: piuparts run ends. ret=0 End: 2022-03-10 09:02:09 GMT