Start: 2020-11-06 18:39:33 GMT [testing] Package: phylonium Source: phylonium (1.2-1) Version: 1.2-1+b1 Installed-Size: 303 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libdivsufsort3 (>= 2.0.1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libgsl25 (>= 2.6), libstdc++6 (>= 5.2) Description: Fast and Accurate Estimation of Evolutionary Distances Homepage: https://github.com/EvolBioInf/phylonium Description-md5: a4b999c60e439b64fe841796b996fd33 Section: science Priority: optional Filename: pool/main/p/phylonium/phylonium_1.2-1+b1_amd64.deb Size: 245456 MD5sum: 055187e51e295c3285fb9c6165f0884a SHA256: 6683f8d41b3c22fd0f7e402a1f5c5c0d0f105ea4dda76d3dfa7d7f80f33f4ad2 [sid] Package: phylonium Version: 1.3-1 Installed-Size: 354 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libdivsufsort3 (>= 2.0.1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2) Description: Fast and Accurate Estimation of Evolutionary Distances Homepage: https://github.com/EvolBioInf/phylonium Description-md5: a4b999c60e439b64fe841796b996fd33 Section: science Priority: optional Filename: pool/main/p/phylonium/phylonium_1.3-1_amd64.deb Size: 287824 MD5sum: a591a88bab641df6db99e98a7d7c03c4 SHA256: 589077a752a6a473edda57cb0b24748aacf7cfd7a9d39f90b265de48ebef24f1 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt phylonium=1.3-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.2~202004292038~1.1.1-19-g418151e2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt phylonium=1.3-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpkoqw0_su 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpkoqw0_su 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpkoqw0_su/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', 'update'] 0m5.0s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [7840 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [5996 kB] Fetched 14.0 MB in 2s (5758 kB/s) Reading package lists... 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', 'update'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.6s DUMP: 113097e6a9a899b888cea06fcae0fb50 - 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.6s INFO: Running scripts post_setup 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_dummy_users'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_dummy_users'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_forbid_home'] 0m6.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_forbid_home'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_minimize'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_minimize'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_zz_backports'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_setup_zz_backports'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.7s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.11 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.48 install ok installed bash bash 5.1~rc1-2 install ok installed bsdutils bsdutils 1:2.36-3+b2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-16 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-18 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.58 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.11 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3.1 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3.1 install ok installed libblkid1:amd64 libblkid1 2.36-3+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-4 install ok installed libc6:amd64 libc6 2.31-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.255 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-16 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.6-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-6 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-10 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-10 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-10 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-10 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36-3+b2 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnss-nis:amd64 libnss-nis 3.1-4 install ok installed libnss-nisplus:amd64 libnss-nisplus 1.3-4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.4.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.1-2+b1 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36-3+b2 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1g-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-16 install ok installed libsystemd0:amd64 libsystemd0 246.6-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20200918-1 install ok installed libtirpc-common libtirpc-common 1.2.6-3 install ok installed libtirpc3:amd64 libtirpc3 1.2.6-3 install ok installed libudev1:amd64 libudev1 246.6-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36-3+b2 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36-3+b2 install ok installed ncurses-base ncurses-base 6.2+20200918-1 install ok installed ncurses-bin ncurses-bin 6.2+20200918-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.3-4 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2020d-1 install ok installed util-linux util-linux 2.36-3+b2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m7.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m7.8s INFO: Running scripts is_testable 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/is_testable_uninstallable'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/is_testable_uninstallable'] 0m8.1s INFO: Running scripts pre_test 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_test_root_password'] 0m8.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_test_root_password'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'show', '--no-all-versions', 'phylonium'] 0m9.4s DUMP: Package: phylonium Source: phylonium (1.2-1) Version: 1.2-1+b1 Installed-Size: 303 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libdivsufsort3 (>= 2.0.1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libgsl25 (>= 2.6), libstdc++6 (>= 5.2) Description-en: Fast and Accurate Estimation of Evolutionary Distances This is the phylonium program for estimating the evolutionary distances between closely related genomes. It is much faster than alignment based approaches for phylogeny reconstruction and usually more accurate than competing alignment-free methods. Description-md5: a4b999c60e439b64fe841796b996fd33 Homepage: https://github.com/EvolBioInf/phylonium Section: science Priority: optional Filename: pool/main/p/phylonium/phylonium_1.2-1+b1_amd64.deb Size: 245456 MD5sum: 055187e51e295c3285fb9c6165f0884a SHA256: 6683f8d41b3c22fd0f7e402a1f5c5c0d0f105ea4dda76d3dfa7d7f80f33f4ad2 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'show', '--no-all-versions', 'phylonium'] 0m9.4s INFO: apt-cache knows about the following packages: phylonium 0m9.4s INFO: Running scripts pre_install 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy'] 0m9.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy', 'phylonium'] 0m9.7s DUMP: phylonium: Installed: (none) Candidate: 1.2-1+b1 Version table: 1.2-1+b1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy', 'phylonium'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', '-y', 'install', 'phylonium'] 0m11.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libdivsufsort3 libgomp1 libgsl25 libgslcblas0 Suggested packages: gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html The following NEW packages will be installed: libdivsufsort3 libgomp1 libgsl25 libgslcblas0 phylonium 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 1426 kB of archives. After this operation, 4038 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libdivsufsort3 amd64 2.0.1-4 [44.5 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.0-16 [99.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgslcblas0 amd64 2.6+dfsg-2 [102 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libgsl25 amd64 2.6+dfsg-2 [934 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 phylonium amd64 1.2-1+b1 [245 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1426 kB in 0s (8646 kB/s) Selecting previously unselected package libdivsufsort3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6653 files and directories currently installed.) Preparing to unpack .../libdivsufsort3_2.0.1-4_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-4) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../libgomp1_10.2.0-16_amd64.deb ... Unpacking libgomp1:amd64 (10.2.0-16) ... Selecting previously unselected package libgslcblas0:amd64. Preparing to unpack .../libgslcblas0_2.6+dfsg-2_amd64.deb ... Unpacking libgslcblas0:amd64 (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:amd64. Preparing to unpack .../libgsl25_2.6+dfsg-2_amd64.deb ... Unpacking libgsl25:amd64 (2.6+dfsg-2) ... Selecting previously unselected package phylonium. Preparing to unpack .../phylonium_1.2-1+b1_amd64.deb ... Unpacking phylonium (1.2-1+b1) ... Setting up libgslcblas0:amd64 (2.6+dfsg-2) ... Setting up libgsl25:amd64 (2.6+dfsg-2) ... Setting up libgomp1:amd64 (10.2.0-16) ... Setting up libdivsufsort3:amd64 (2.0.1-4) ... Setting up phylonium (1.2-1+b1) ... Processing triggers for libc-bin (2.31-4) ... 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', '-y', 'install', 'phylonium'] 0m11.6s INFO: Running scripts post_install 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_install_exceptions'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_install_exceptions'] 0m11.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m12.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m12.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpkoqw0_su to sid 0m12.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m12.0s INFO: Running scripts pre_distupgrade 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', 'update'] 0m15.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [146 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8494 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6397 kB] Fetched 15.0 MB in 3s (5430 kB/s) Reading package lists... 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', 'update'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', '-yf', 'dist-upgrade'] 0m17.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgsl25 libgslcblas0 Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: bash findutils libgcrypt20 libidn2-0 libssl1.1 phylonium 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4594 kB of archives. After this operation, 95.2 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.1~rc2-1 [1414 kB] Get:2 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.7.0+git20201010-2 [694 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.8.7-2 [563 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.0-2 [85.6 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libssl1.1 amd64 1.1.1h-1 [1550 kB] Get:6 http://deb.debian.org/debian sid/main amd64 phylonium amd64 1.3-1 [288 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4594 kB in 0s (12.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6691 files and directories currently installed.) Preparing to unpack .../bash_5.1~rc2-1_amd64.deb ... Unpacking bash (5.1~rc2-1) over (5.1~rc1-2) ... Setting up bash (5.1~rc2-1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6691 files and directories currently installed.) Preparing to unpack .../findutils_4.7.0+git20201010-2_amd64.deb ... Unpacking findutils (4.7.0+git20201010-2) over (4.7.0-1) ... Setting up findutils (4.7.0+git20201010-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6691 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.7-2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.8.7-2) over (1.8.6-2) ... Setting up libgcrypt20:amd64 (1.8.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6691 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.0-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.0-2) over (2.3.0-1) ... Setting up libidn2-0:amd64 (2.3.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6691 files and directories currently installed.) Preparing to unpack .../libssl1.1_1.1.1h-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1h-1) over (1.1.1g-1) ... Setting up libssl1.1:amd64 (1.1.1h-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6690 files and directories currently installed.) Preparing to unpack .../phylonium_1.3-1_amd64.deb ... Unpacking phylonium (1.3-1) over (1.2-1+b1) ... Setting up phylonium (1.3-1) ... Processing triggers for libc-bin (2.31-4) ... 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', '-yf', 'dist-upgrade'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.5s DUMP: 082a16dce73e35d43698af914f510ef8 - 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'show', '--no-all-versions', 'phylonium'] 0m17.7s DUMP: Package: phylonium Version: 1.3-1 Installed-Size: 354 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libdivsufsort3 (>= 2.0.1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2) Description-en: Fast and Accurate Estimation of Evolutionary Distances This is the phylonium program for estimating the evolutionary distances between closely related genomes. It is much faster than alignment based approaches for phylogeny reconstruction and usually more accurate than competing alignment-free methods. Description-md5: a4b999c60e439b64fe841796b996fd33 Homepage: https://github.com/EvolBioInf/phylonium Section: science Priority: optional Filename: pool/main/p/phylonium/phylonium_1.3-1_amd64.deb Size: 287824 MD5sum: a591a88bab641df6db99e98a7d7c03c4 SHA256: 589077a752a6a473edda57cb0b24748aacf7cfd7a9d39f90b265de48ebef24f1 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'show', '--no-all-versions', 'phylonium'] 0m17.7s INFO: apt-cache knows about the following packages: phylonium 0m17.7s INFO: Running scripts pre_install 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_database-server'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_database-server'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_exceptions'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_exceptions'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_extras'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_extras'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy'] 0m17.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy', 'phylonium'] 0m17.8s DUMP: phylonium: Installed: 1.3-1 Candidate: 1.3-1 Version table: *** 1.3-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy', 'phylonium'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', '-y', 'install', 'phylonium'] 0m18.2s DUMP: Reading package lists... Building dependency tree... Reading state information... phylonium is already the newest version (1.3-1). The following packages were automatically installed and are no longer required: libgsl25 libgslcblas0 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', '-y', 'install', 'phylonium'] 0m18.2s INFO: Running scripts post_install 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_install_exceptions'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_install_exceptions'] 0m18.2s INFO: Running scripts post_distupgrade 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_distupgrade_exceptions'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_distupgrade_exceptions'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_distupgrade_zz_backports'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_distupgrade_zz_backports'] 0m18.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m18.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m18.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m19.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m19.0s INFO: Running scripts pre_install 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_database-server'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_database-server'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_exceptions'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_exceptions'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_extras'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_extras'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy'] 0m19.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy', 'phylonium'] 0m19.2s DUMP: phylonium: Installed: 1.3-1 Candidate: 1.3-1 Version table: *** 1.3-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-cache', 'policy', 'phylonium'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', '-y', 'install', 'phylonium=1.3-1'] 0m19.6s DUMP: Reading package lists... Building dependency tree... Reading state information... phylonium is already the newest version (1.3-1). The following packages were automatically installed and are no longer required: libgsl25 libgslcblas0 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', '-y', 'install', 'phylonium=1.3-1'] 0m19.6s INFO: Running scripts post_install 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_install_exceptions'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_install_exceptions'] 0m19.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m20.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m20.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', '-ac', '--ignore-obsolete'] 0m22.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', '-ac', '--ignore-obsolete'] 0m22.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m22.3s DUMP: 0.15.2 0m22.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m22.3s INFO: Running adequate version 0.15.2 now. 0m22.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'phylonium'] 0m22.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'phylonium'] 0m22.3s INFO: Running scripts pre_remove 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_exceptions'] 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/pre_remove_exceptions'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m23.5s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.11 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.48 install ok installed bash bash 5.1~rc2-1 install ok installed bsdutils bsdutils 1:2.36-3+b2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0+git20201010-2 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-16 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-18 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.58 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.11 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3.1 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3.1 install ok installed libblkid1:amd64 libblkid1 2.36-3+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-4 install ok installed libc6:amd64 libc6 2.31-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.255 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-4 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-16 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-6 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgomp1:amd64 libgomp1 10.2.0-16 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgsl25:amd64 libgsl25 2.6+dfsg-2 install ok installed libgslcblas0:amd64 libgslcblas0 2.6+dfsg-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-10 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-10 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-10 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-10 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36-3+b2 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnss-nis:amd64 libnss-nis 3.1-4 install ok installed libnss-nisplus:amd64 libnss-nisplus 1.3-4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.4.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.1-2+b1 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36-3+b2 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1h-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-16 install ok installed libsystemd0:amd64 libsystemd0 246.6-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20200918-1 install ok installed libtirpc-common libtirpc-common 1.2.6-3 install ok installed libtirpc3:amd64 libtirpc3 1.2.6-3 install ok installed libudev1:amd64 libudev1 246.6-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36-3+b2 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36-3+b2 install ok installed ncurses-base ncurses-base 6.2+20200918-1 install ok installed ncurses-bin ncurses-bin 6.2+20200918-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.3-4 install ok installed phylonium phylonium 1.3-1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2020d-1 install ok installed util-linux util-linux 2.36-3+b2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', 'remove', 'libdivsufsort3:amd64', 'libgomp1:amd64', 'libgsl25:amd64', 'libgslcblas0:amd64', 'phylonium'] 0m24.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libdivsufsort3 libgomp1 libgsl25 libgslcblas0 phylonium 0 upgraded, 0 newly installed, 5 to remove and 0 not upgraded. After this operation, 4090 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6689 files and directories currently installed.) Removing phylonium (1.3-1) ... Removing libdivsufsort3:amd64 (2.0.1-4) ... Removing libgomp1:amd64 (10.2.0-16) ... Removing libgsl25:amd64 (2.6+dfsg-2) ... Removing libgslcblas0:amd64 (2.6+dfsg-2) ... Processing triggers for libc-bin (2.31-4) ... 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', 'remove', 'libdivsufsort3:amd64', 'libgomp1:amd64', 'libgsl25:amd64', 'libgslcblas0:amd64', 'phylonium'] 0m24.3s INFO: Running scripts post_remove 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_remove_exceptions'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_remove_exceptions'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg', '--purge', 'libdivsufsort3:amd64', 'libgomp1:amd64', 'libgsl25:amd64', 'libgslcblas0:amd64'] 0m24.3s DUMP: dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgsl25 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg', '--purge', 'libdivsufsort3:amd64', 'libgomp1:amd64', 'libgsl25:amd64', 'libgslcblas0:amd64'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg', '--purge', 'phylonium'] 0m24.3s DUMP: dpkg: warning: ignoring request to remove phylonium which isn't installed 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg', '--purge', 'phylonium'] 0m24.3s INFO: Running scripts post_purge 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_purge_exceptions'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_purge_exceptions'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg', '--purge', '--pending'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg', '--purge', '--pending'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg', '--remove', '--pending'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg', '--remove', '--pending'] 0m24.4s INFO: Running scripts post_test 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_test_exceptions'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'tmp/scripts/post_test_exceptions'] 0m24.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m24.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg-divert', '--list'] 0m24.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'dpkg-divert', '--list'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', 'clean'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su', 'apt-get', 'clean'] 0m24.7s DEBUG: Recording chroot state 0m25.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/shm'] 0m25.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/shm'] 0m25.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/console'] 0m25.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/console'] 0m25.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/ptmx'] 0m25.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/ptmx'] 0m25.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/pts'] 0m25.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/dev/pts'] 0m25.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/proc'] 0m25.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su/proc'] 0m25.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m25.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpkoqw0_su'] 0m25.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpkoqw0_su 0m25.7s INFO: PASS: Upgrading between Debian distributions. 0m25.7s INFO: PASS: All tests. 0m25.7s INFO: piuparts run ends. ret=0 End: 2020-11-06 18:39:59 GMT