Start: 2020-10-03 12:00:38 GMT [testing] Package: picopore Version: 1.2.0-2 Installed-Size: 24 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-picopore Description: lossless compression of Nanopore files Homepage: https://github.com/scottgigante/picopore Description-md5: a521eb7e26b000a57d0f39be706493bc Section: science Priority: optional Filename: pool/main/p/picopore/picopore_1.2.0-2_all.deb Size: 10400 MD5sum: e420d6cfcab131dc3b15708b19a1464c SHA256: a174f89e6f168288b32464694fdc28806c9c6420de2ae0cd667f7ac793e431f7 [sid] Package: picopore Version: 1.2.0-2 Installed-Size: 24 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-picopore Description: lossless compression of Nanopore files Homepage: https://github.com/scottgigante/picopore Description-md5: a521eb7e26b000a57d0f39be706493bc Section: science Priority: optional Filename: pool/main/p/picopore/picopore_1.2.0-2_all.deb Size: 10400 MD5sum: e420d6cfcab131dc3b15708b19a1464c SHA256: a174f89e6f168288b32464694fdc28806c9c6420de2ae0cd667f7ac793e431f7 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt picopore=1.2.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.2~202004292038~1.1.1-19-g418151e2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt picopore=1.2.0-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-11-amd64 #1 SMP Debian 4.19.146-1 (2020-09-17) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpaydm03je 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpaydm03je 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpaydm03je', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpaydm03je', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpaydm03je/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpaydm03je/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpaydm03je/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', 'update'] 0m6.2s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [7704 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [5923 kB] Fetched 13.7 MB in 4s (3526 kB/s) Reading package lists... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', 'update'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', '-yf', 'dist-upgrade'] 0m7.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: coreutils debianutils 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2968 kB of archives. After this operation, 1812 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 coreutils amd64 8.32-4+b1 [2867 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 debianutils amd64 4.11.2 [101 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2968 kB in 0s (7693 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6529 files and directories currently installed.) Preparing to unpack .../coreutils_8.32-4+b1_amd64.deb ... Unpacking coreutils (8.32-4+b1) over (8.30-3+b1) ... Setting up coreutils (8.32-4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../debianutils_4.11.2_amd64.deb ... Unpacking debianutils (4.11.2) over (4.9.1) ... Setting up debianutils (4.11.2) ... 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', '-yf', 'dist-upgrade'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.0s DUMP: 1dc7c50e4caae7d760d4d949f405dda8 - 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.0s INFO: Running scripts post_setup 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_dummy_users'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_dummy_users'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_forbid_home'] 0m8.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_forbid_home'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_minimize'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_minimize'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_zz_backports'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_setup_zz_backports'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.9s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.10 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-7 install ok installed bsdutils bsdutils 1:2.36-3+b1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-9 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-18 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.58 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.10 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3+b1 install ok installed libblkid1:amd64 libblkid1 2.36-3+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-3 install ok installed libc6:amd64 libc6 2.31-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.254 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.6-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-6 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36-3+b1 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.4.4-1 install ok installed libselinux1:amd64 libselinux1 3.1-2 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36-3+b1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 246.6-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20200918-1 install ok installed libudev1:amd64 libudev1 246.6-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36-3+b1 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36-3+b1 install ok installed ncurses-base ncurses-base 6.2+20200918-1 install ok installed ncurses-bin ncurses-bin 6.2+20200918-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.3-4 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2020a-1 install ok installed util-linux util-linux 2.36-3+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m9.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m9.2s INFO: Running scripts is_testable 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/is_testable_uninstallable'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/is_testable_uninstallable'] 0m9.2s INFO: Running scripts pre_test 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_test_exceptions'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_test_exceptions'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_test_root_password'] 0m9.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_test_root_password'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'show', '--no-all-versions', 'picopore'] 0m9.4s DUMP: Package: picopore Version: 1.2.0-2 Installed-Size: 24 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-picopore Description-en: lossless compression of Nanopore files The Nanopore is a device to determine the sequences of single moleculres of DNA. No amplification. The output is gigantic and tools like this one help to reduce it. . Over time, other means have substitute the need for this one. Upstream has halted development. Some tutorials and pipelines of the Nanopore still refer to it, though. Description-md5: a521eb7e26b000a57d0f39be706493bc Homepage: https://github.com/scottgigante/picopore Section: science Priority: optional Filename: pool/main/p/picopore/picopore_1.2.0-2_all.deb Size: 10400 MD5sum: e420d6cfcab131dc3b15708b19a1464c SHA256: a174f89e6f168288b32464694fdc28806c9c6420de2ae0cd667f7ac793e431f7 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'show', '--no-all-versions', 'picopore'] 0m9.4s INFO: apt-cache knows about the following packages: picopore 0m9.4s INFO: Running scripts pre_install 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy'] 0m9.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy', 'picopore'] 0m9.5s DUMP: picopore: Installed: (none) Candidate: 1.2.0-2 Version table: 1.2.0-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy', 'picopore'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', '-y', 'install', 'picopore'] 0m18.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: hdf5-tools libaec0 libblas3 libexpat1 libgfortran5 libhdf5-103-1 libhdf5-hl-100 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 libncursesw6 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libquadmath0 libreadline8 libsqlite3-0 libssl1.1 libsz2 libyaml-0-2 mime-support node-jquery python3 python3-argh python3-distutils python3-future python3-h5py-serial python3-lib2to3 python3-minimal python3-numpy python3-pathtools python3-picopore python3-pkg-resources python3-setuptools python3-six python3-watchdog python3-yaml python3.8 python3.8-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv python-future-doc python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python3-numpy-dbg python-setuptools-doc python3.8-venv python3.8-doc binutils binfmt-support readline-doc Recommended packages: javascript-common libgpm2 bzip2 file xz-utils python3-argcomplete The following NEW packages will be installed: hdf5-tools libaec0 libblas3 libexpat1 libgfortran5 libhdf5-103-1 libhdf5-hl-100 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 libncursesw6 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libquadmath0 libreadline8 libsqlite3-0 libssl1.1 libsz2 libyaml-0-2 mime-support node-jquery picopore python3 python3-argh python3-distutils python3-future python3-h5py-serial python3-lib2to3 python3-minimal python3-numpy python3-pathtools python3-picopore python3-pkg-resources python3-setuptools python3-six python3-watchdog python3-yaml python3.8 python3.8-minimal readline-common 0 upgraded, 43 newly installed, 0 to remove and 0 not upgraded. Need to get 18.2 MB of archives. After this operation, 70.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libpython3.8-minimal amd64 3.8.6-1 [761 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 python3.8-minimal amd64 3.8.6-1 [1863 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.8.2-3 [37.6 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.64 [37.8 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20200918-1 [132 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.0-4 [72.5 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.33.0-1 [790 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libpython3.8-stdlib amd64 3.8.6-1 [1720 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 python3.8 amd64 3.8.6-1 [422 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.8.2-3 [20.8 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.8.2-3 [63.7 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get:17 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-2 [1185 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-2 [81.6 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 hdf5-tools amd64 1.10.6+repack-2 [438 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.0-9 [145 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.0-9 [728 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 node-jquery all 3.5.1+dfsg-4 [309 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg-4 [3612 B] Get:25 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.2.1-1 [122 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 liblzf1 amd64 3.6-2 [9896 B] Get:29 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.8.5-1 [78.4 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 python3-future all 0.18.2-4 [348 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 49.3.1-2 [188 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.1-1 [2691 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.15.0-1 [16.8 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 python3-h5py-serial amd64 2.10.0-9 [670 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 python3-pathtools all 0.1.2-4 [11.5 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.8.5-1 [145 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 49.3.1-2 [512 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 python3-argh all 0.26.2-1.1 [25.1 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-2 [148 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 python3-watchdog all 0.9.0-3 [120 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 python3-picopore all 1.2.0-2 [15.4 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 picopore all 1.2.0-2 [10.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.2 MB in 1s (29.0 MB/s) Selecting previously unselected package libssl1.1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6620 files and directories currently installed.) Preparing to unpack .../libssl1.1_1.1.1g-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1g-1) ... Selecting previously unselected package libpython3.8-minimal:amd64. Preparing to unpack .../libpython3.8-minimal_3.8.6-1_amd64.deb ... Unpacking libpython3.8-minimal:amd64 (3.8.6-1) ... Selecting previously unselected package libexpat1:amd64. 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Unpacking libpython3-stdlib:amd64 (3.8.2-3) ... Setting up python3-minimal (3.8.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7360 files and directories currently installed.) Preparing to unpack .../00-python3_3.8.2-3_amd64.deb ... Unpacking python3 (3.8.2-3) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../01-libaec0_1.0.4-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.4-1) ... 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Unpacking liblapack3:amd64 (3.9.0-3) ... Selecting previously unselected package liblzf1:amd64. Preparing to unpack .../14-liblzf1_3.6-2_amd64.deb ... Unpacking liblzf1:amd64 (3.6-2) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../15-libyaml-0-2_0.2.2-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.2-1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../16-python3-lib2to3_3.8.5-1_all.deb ... Unpacking python3-lib2to3 (3.8.5-1) ... Selecting previously unselected package python3-future. Preparing to unpack .../17-python3-future_0.18.2-4_all.deb ... Unpacking python3-future (0.18.2-4) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../18-python3-pkg-resources_49.3.1-2_all.deb ... Unpacking python3-pkg-resources (49.3.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../19-python3-numpy_1%3a1.19.1-1_amd64.deb ... Unpacking python3-numpy (1:1.19.1-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../20-python3-six_1.15.0-1_all.deb ... Unpacking python3-six (1.15.0-1) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../21-python3-h5py-serial_2.10.0-9_amd64.deb ... Unpacking python3-h5py-serial (2.10.0-9) ... Selecting previously unselected package python3-pathtools. Preparing to unpack .../22-python3-pathtools_0.1.2-4_all.deb ... Unpacking python3-pathtools (0.1.2-4) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../23-python3-distutils_3.8.5-1_all.deb ... Unpacking python3-distutils (3.8.5-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../24-python3-setuptools_49.3.1-2_all.deb ... Unpacking python3-setuptools (49.3.1-2) ... Selecting previously unselected package python3-argh. Preparing to unpack .../25-python3-argh_0.26.2-1.1_all.deb ... Unpacking python3-argh (0.26.2-1.1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../26-python3-yaml_5.3.1-2_amd64.deb ... Unpacking python3-yaml (5.3.1-2) ... Selecting previously unselected package python3-watchdog. Preparing to unpack .../27-python3-watchdog_0.9.0-3_all.deb ... Unpacking python3-watchdog (0.9.0-3) ... Selecting previously unselected package python3-picopore. Preparing to unpack .../28-python3-picopore_1.2.0-2_all.deb ... Unpacking python3-picopore (1.2.0-2) ... Selecting previously unselected package picopore. Preparing to unpack .../29-picopore_1.2.0-2_all.deb ... Unpacking picopore (1.2.0-2) ... Setting up mime-support (3.64) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsqlite3-0:amd64 (3.33.0-1) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libblas3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-2) ... Setting up libquadmath0:amd64 (10.2.0-9) ... Setting up libncursesw6:amd64 (6.2+20200918-1) ... Setting up libgfortran5:amd64 (10.2.0-9) ... Setting up readline-common (8.0-4) ... Setting up node-jquery (3.5.1+dfsg-4) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up liblapack3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.0-4) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-2) ... Setting up libjs-jquery (3.5.1+dfsg-4) ... Setting up libpython3.8-stdlib:amd64 (3.8.6-1) ... Setting up python3.8 (3.8.6-1) ... Setting up libpython3-stdlib:amd64 (3.8.2-3) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-2) ... Setting up python3 (3.8.2-3) ... Setting up hdf5-tools (1.10.6+repack-2) ... Setting up python3-six (1.15.0-1) ... Setting up python3-pathtools (0.1.2-4) ... Setting up libjs-sphinxdoc (3.2.1-1) ... Setting up python3-lib2to3 (3.8.5-1) ... Setting up python3-pkg-resources (49.3.1-2) ... Setting up python3-distutils (3.8.5-1) ... Setting up python3-argh (0.26.2-1.1) ... Setting up python3-setuptools (49.3.1-2) ... Setting up python3-yaml (5.3.1-2) ... Setting up python3-numpy (1:1.19.1-1) ... Setting up python3-future (0.18.2-4) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-watchdog (0.9.0-3) ... Setting up python3-h5py-serial (2.10.0-9) ... Setting up python3-picopore (1.2.0-2) ... Setting up picopore (1.2.0-2) ... Processing triggers for libc-bin (2.31-3) ... 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', '-y', 'install', 'picopore'] 0m18.3s INFO: Running scripts post_install 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_install_exceptions'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_install_exceptions'] 0m18.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m18.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m18.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpaydm03je to sid 0m18.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m18.8s INFO: Running scripts pre_distupgrade 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', 'update'] 0m22.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [146 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8400 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6329 kB] Fetched 14.9 MB in 3s (4349 kB/s) Reading package lists... 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', 'update'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', '-yf', 'dist-upgrade'] 0m26.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gcc-10-base libgcc-s1 libgfortran5 libquadmath0 libstdc++6 python3-numpy 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4325 kB of archives. After this operation, 327 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.2.0-13 [199 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 10.2.0-13 [492 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 10.2.0-13 [145 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 10.2.0-13 [728 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 10.2.0-13 [41.3 kB] Get:6 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.19.2-2 [2719 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4325 kB in 0s (13.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9057 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10.2.0-13_amd64.deb ... Unpacking gcc-10-base:amd64 (10.2.0-13) over (10.2.0-9) ... Setting up gcc-10-base:amd64 (10.2.0-13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9057 files and directories currently installed.) Preparing to unpack .../libstdc++6_10.2.0-13_amd64.deb ... Unpacking libstdc++6:amd64 (10.2.0-13) over (10.2.0-9) ... Setting up libstdc++6:amd64 (10.2.0-13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9057 files and directories currently installed.) Preparing to unpack .../libquadmath0_10.2.0-13_amd64.deb ... Unpacking libquadmath0:amd64 (10.2.0-13) over (10.2.0-9) ... Preparing to unpack .../libgfortran5_10.2.0-13_amd64.deb ... Unpacking libgfortran5:amd64 (10.2.0-13) over (10.2.0-9) ... Preparing to unpack .../libgcc-s1_10.2.0-13_amd64.deb ... Unpacking libgcc-s1:amd64 (10.2.0-13) over (10.2.0-9) ... Setting up libgcc-s1:amd64 (10.2.0-13) ... 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Processing triggers for libc-bin (2.31-3) ... 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', '-yf', 'dist-upgrade'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.6s DUMP: fc1d446e3b46b3babd09d4aab2ea4378 - 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'show', '--no-all-versions', 'picopore'] 0m26.8s DUMP: Package: picopore Version: 1.2.0-2 Installed-Size: 24 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-picopore Description-en: lossless compression of Nanopore files The Nanopore is a device to determine the sequences of single moleculres of DNA. No amplification. The output is gigantic and tools like this one help to reduce it. . Over time, other means have substitute the need for this one. Upstream has halted development. Some tutorials and pipelines of the Nanopore still refer to it, though. Description-md5: a521eb7e26b000a57d0f39be706493bc Homepage: https://github.com/scottgigante/picopore Section: science Priority: optional Filename: pool/main/p/picopore/picopore_1.2.0-2_all.deb Size: 10400 MD5sum: e420d6cfcab131dc3b15708b19a1464c SHA256: a174f89e6f168288b32464694fdc28806c9c6420de2ae0cd667f7ac793e431f7 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'show', '--no-all-versions', 'picopore'] 0m26.8s INFO: apt-cache knows about the following packages: picopore 0m26.8s INFO: Running scripts pre_install 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_database-server'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_database-server'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_exceptions'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_exceptions'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_extras'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_extras'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy'] 0m26.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy', 'picopore'] 0m27.0s DUMP: picopore: Installed: 1.2.0-2 Candidate: 1.2.0-2 Version table: *** 1.2.0-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy', 'picopore'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', '-y', 'install', 'picopore'] 0m27.4s DUMP: Reading package lists... Building dependency tree... Reading state information... picopore is already the newest version (1.2.0-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', '-y', 'install', 'picopore'] 0m27.4s INFO: Running scripts post_install 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_install_exceptions'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_install_exceptions'] 0m27.4s INFO: Running scripts post_distupgrade 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m28.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m28.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m28.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m28.8s INFO: Running scripts pre_install 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_database-server'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_database-server'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_exceptions'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_exceptions'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_extras'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_extras'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy'] 0m28.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy', 'picopore'] 0m29.0s DUMP: picopore: Installed: 1.2.0-2 Candidate: 1.2.0-2 Version table: *** 1.2.0-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-cache', 'policy', 'picopore'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', '-y', 'install', 'picopore=1.2.0-2'] 0m29.3s DUMP: Reading package lists... Building dependency tree... Reading state information... picopore is already the newest version (1.2.0-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', '-y', 'install', 'picopore=1.2.0-2'] 0m29.3s INFO: Running scripts post_install 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_install_exceptions'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_install_exceptions'] 0m29.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m29.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m30.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpaydm03je', '-ac', '--ignore-obsolete'] 0m31.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpaydm03je', '-ac', '--ignore-obsolete'] 0m31.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.5s DUMP: 0.15.2 0m31.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.5s INFO: Running adequate version 0.15.2 now. 0m31.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'picopore'] 0m31.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'picopore'] 0m31.6s INFO: Running scripts pre_remove 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_exceptions'] 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/pre_remove_exceptions'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m32.9s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.10 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-7 install ok installed bsdutils bsdutils 1:2.36-3+b1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-13 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-18 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hdf5-tools hdf5-tools 1.10.6+repack-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.58 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libaec0:amd64 libaec0 1.0.4-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.10 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3+b1 install ok installed libblas3:amd64 libblas3 3.9.0-3 install ok installed libblkid1:amd64 libblkid1 2.36-3+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-3 install ok installed libc6:amd64 libc6 2.31-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.254 install ok installed libexpat1:amd64 libexpat1 2.2.9-1 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-13 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.6-2 install ok installed libgfortran5:amd64 libgfortran5 10.2.0-13 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-6 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.6+repack-2 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.6+repack-2 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed libjs-jquery libjs-jquery 3.5.1+dfsg-4 install ok installed libjs-sphinxdoc libjs-sphinxdoc 3.2.1-1 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-1 install ok installed liblapack3:amd64 liblapack3 3.9.0-3 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzf1:amd64 liblzf1 3.6-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36-3+b1 install ok installed libncursesw6:amd64 libncursesw6 6.2+20200918-1 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.8.2-3 install ok installed libpython3.8-minimal:amd64 libpython3.8-minimal 3.8.6-1 install ok installed libpython3.8-stdlib:amd64 libpython3.8-stdlib 3.8.6-1 install ok installed libquadmath0:amd64 libquadmath0 10.2.0-13 install ok installed libreadline8:amd64 libreadline8 8.0-4 install ok installed libseccomp2:amd64 libseccomp2 2.4.4-1 install ok installed libselinux1:amd64 libselinux1 3.1-2 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36-3+b1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.33.0-1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1g-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-13 install ok installed libsystemd0:amd64 libsystemd0 246.6-1 install ok installed libsz2:amd64 libsz2 1.0.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20200918-1 install ok installed libudev1:amd64 libudev1 246.6-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36-3+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.2-1 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mime-support mime-support 3.64 install ok installed mount mount 2.36-3+b1 install ok installed ncurses-base ncurses-base 6.2+20200918-1 install ok installed ncurses-bin ncurses-bin 6.2+20200918-1 install ok installed node-jquery node-jquery 3.5.1+dfsg-4 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.3-4 install ok installed picopore picopore 1.2.0-2 install ok installed python3 python3 3.8.2-3 install ok installed python3-argh python3-argh 0.26.2-1.1 install ok installed python3-distutils python3-distutils 3.8.5-1 install ok installed python3-future python3-future 0.18.2-4 install ok installed python3-h5py-serial python3-h5py-serial 2.10.0-9 install ok installed python3-lib2to3 python3-lib2to3 3.8.5-1 install ok installed python3-minimal python3-minimal 3.8.2-3 install ok installed python3-numpy python3-numpy 1:1.19.2-2 install ok installed python3-pathtools python3-pathtools 0.1.2-4 install ok installed python3-picopore python3-picopore 1.2.0-2 install ok installed python3-pkg-resources python3-pkg-resources 49.3.1-2 install ok installed python3-setuptools python3-setuptools 49.3.1-2 install ok installed python3-six python3-six 1.15.0-1 install ok installed python3-watchdog python3-watchdog 0.9.0-3 install ok installed python3-yaml python3-yaml 5.3.1-2 install ok installed python3.8 python3.8 3.8.6-1 install ok installed python3.8-minimal python3.8-minimal 3.8.6-1 install ok installed readline-common readline-common 8.0-4 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2020a-1 install ok installed util-linux util-linux 2.36-3+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', 'remove', 'hdf5-tools', 'libaec0:amd64', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libsz2:amd64', 'libyaml-0-2:amd64', 'mime-support', 'node-jquery', 'python3', 'python3-argh', 'python3-distutils', 'python3-future', 'python3-h5py-serial', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pathtools', 'python3-picopore', 'python3-pkg-resources', 'python3-setuptools', 'python3-six', 'python3-watchdog', 'python3-yaml', 'python3.8', 'python3.8-minimal', 'readline-common', 'picopore'] 0m34.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: hdf5-tools libaec0 libblas3 libexpat1 libgfortran5 libhdf5-103-1 libhdf5-hl-100 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 libncursesw6 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libquadmath0 libreadline8 libsqlite3-0 libssl1.1 libsz2 libyaml-0-2 mime-support node-jquery picopore python3 python3-argh python3-distutils python3-future python3-h5py-serial python3-lib2to3 python3-minimal python3-numpy python3-pathtools python3-picopore python3-pkg-resources python3-setuptools python3-six python3-watchdog python3-yaml python3.8 python3.8-minimal readline-common 0 upgraded, 0 newly installed, 43 to remove and 0 not upgraded. After this operation, 71.1 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9057 files and directories currently installed.) Removing picopore (1.2.0-2) ... Removing python3-picopore (1.2.0-2) ... Removing hdf5-tools (1.10.6+repack-2) ... Removing python3-h5py-serial (2.10.0-9) ... Removing libhdf5-hl-100:amd64 (1.10.6+repack-2) ... Removing libhdf5-103-1:amd64 (1.10.6+repack-2) ... Removing libsz2:amd64 (1.0.4-1) ... Removing libaec0:amd64 (1.0.4-1) ... Removing python3-numpy (1:1.19.2-2) ... Removing liblapack3:amd64 (3.9.0-3) ... Removing libblas3:amd64 (3.9.0-3) ... Removing python3-watchdog (0.9.0-3) ... Removing python3-setuptools (49.3.1-2) ... Removing python3-distutils (3.8.5-1) ... Removing python3-six (1.15.0-1) ... Removing python3-yaml (5.3.1-2) ... Removing python3-pkg-resources (49.3.1-2) ... Removing libgfortran5:amd64 (10.2.0-13) ... Removing libjs-sphinxdoc (3.2.1-1) ... Removing libjs-jquery (3.5.1+dfsg-4) ... Removing libjs-underscore (1.9.1~dfsg-1) ... Removing liblzf1:amd64 (3.6-2) ... Removing libquadmath0:amd64 (10.2.0-13) ... Removing libyaml-0-2:amd64 (0.2.2-1) ... Removing node-jquery (3.5.1+dfsg-4) ... Removing python3-argh (0.26.2-1.1) ... Removing python3-future (0.18.2-4) ... Removing python3-lib2to3 (3.8.5-1) ... Removing python3-pathtools (0.1.2-4) ... Removing python3 (3.8.2-3) ... Removing python3-minimal (3.8.2-3) ... Removing python3.8 (3.8.6-1) ... Removing python3.8-minimal (3.8.6-1) ... Removing libexpat1:amd64 (2.2.9-1) ... Removing libpython3-stdlib:amd64 (3.8.2-3) ... Removing libpython3.8-stdlib:amd64 (3.8.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.2+20200918-1) ... Removing libpython3.8-minimal:amd64 (3.8.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.0-4) ... Removing libsqlite3-0:amd64 (3.33.0-1) ... Removing libssl1.1:amd64 (1.1.1g-1) ... Removing mime-support (3.64) ... Removing readline-common (8.0-4) ... Processing triggers for libc-bin (2.31-3) ... 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', 'remove', 'hdf5-tools', 'libaec0:amd64', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libsz2:amd64', 'libyaml-0-2:amd64', 'mime-support', 'node-jquery', 'python3', 'python3-argh', 'python3-distutils', 'python3-future', 'python3-h5py-serial', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pathtools', 'python3-picopore', 'python3-pkg-resources', 'python3-setuptools', 'python3-six', 'python3-watchdog', 'python3-yaml', 'python3.8', 'python3.8-minimal', 'readline-common', 'picopore'] 0m34.9s INFO: Running scripts post_remove 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_remove_exceptions'] 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_remove_exceptions'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg', '--purge', 'hdf5-tools', 'libaec0:amd64', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libsz2:amd64', 'libyaml-0-2:amd64', 'mime-support', 'node-jquery', 'python3', 'python3-argh', 'python3-distutils', 'python3-future', 'python3-h5py-serial', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pathtools', 'python3-picopore', 'python3-pkg-resources', 'python3-setuptools', 'python3-six', 'python3-watchdog', 'python3-yaml', 'python3.8', 'python3.8-minimal', 'readline-common'] 0m35.0s DUMP: dpkg: warning: ignoring request to remove hdf5-tools which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100 which isn't installed (Reading database ... 6624 files and directories currently installed.) Purging configuration files for libjs-jquery (3.5.1+dfsg-4) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.8-minimal:amd64 (3.8.6-1) ... dpkg: warning: ignoring request to remove libpython3.8-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1g-1) ... dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for mime-support (3.64) ... dpkg: warning: ignoring request to remove node-jquery which isn't installed Purging configuration files for python3 (3.8.2-3) ... dpkg: warning: ignoring request to remove python3-argh which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-future which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pathtools which isn't installed dpkg: warning: ignoring request to remove python3-picopore which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-watchdog which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.8 which isn't installed Purging configuration files for python3.8-minimal (3.8.6-1) ... Purging configuration files for readline-common (8.0-4) ... 0m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg', '--purge', 'hdf5-tools', 'libaec0:amd64', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libsz2:amd64', 'libyaml-0-2:amd64', 'mime-support', 'node-jquery', 'python3', 'python3-argh', 'python3-distutils', 'python3-future', 'python3-h5py-serial', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pathtools', 'python3-picopore', 'python3-pkg-resources', 'python3-setuptools', 'python3-six', 'python3-watchdog', 'python3-yaml', 'python3.8', 'python3.8-minimal', 'readline-common'] 0m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg', '--purge', 'picopore'] 0m35.0s DUMP: dpkg: warning: ignoring request to remove picopore which isn't installed 0m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg', '--purge', 'picopore'] 0m35.0s INFO: Running scripts post_purge 0m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_purge_exceptions'] 0m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_purge_exceptions'] 0m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg', '--purge', '--pending'] 0m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg', '--purge', '--pending'] 0m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg', '--remove', '--pending'] 0m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg', '--remove', '--pending'] 0m35.1s INFO: Running scripts post_test 0m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_test_exceptions'] 0m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'tmp/scripts/post_test_exceptions'] 0m35.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m35.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg-divert', '--list'] 0m35.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'dpkg-divert', '--list'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', 'clean'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaydm03je', 'apt-get', 'clean'] 0m35.4s DEBUG: Recording chroot state 0m36.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/shm'] 0m36.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/shm'] 0m36.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/console'] 0m36.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/console'] 0m36.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/ptmx'] 0m36.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/ptmx'] 0m36.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/pts'] 0m36.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaydm03je/dev/pts'] 0m36.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaydm03je/proc'] 0m36.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaydm03je/proc'] 0m36.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m36.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpaydm03je'] 0m36.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpaydm03je 0m36.3s INFO: PASS: Upgrading between Debian distributions. 0m36.3s INFO: PASS: All tests. 0m36.3s INFO: piuparts run ends. ret=0 End: 2020-10-03 12:01:14 GMT