Start: 2021-09-28 15:31:16 GMT [testing] Package: placnet Version: 1.03-3 Installed-Size: 38 Maintainer: Debian Med Packaging Team Architecture: all Depends: ncbi-blast+ Description: Plasmid Constellation Network project Homepage: http://sourceforge.net/projects/placnet/ Description-md5: b986c8bedbeeec858c98e5b2c199b819 Section: science Priority: optional Filename: pool/main/p/placnet/placnet_1.03-3_all.deb Size: 10712 MD5sum: 8eaa699eb59cdf5e00803deae66f9f21 SHA256: 2befbf79ade22fab9982864993d70783b8e095b1dbf749018b410c1ec6bfdaf0 [sid] Package: placnet Version: 1.04-1 Installed-Size: 38 Maintainer: Debian Med Packaging Team Architecture: all Depends: ncbi-blast+ Description: Plasmid Constellation Network project Multi-Arch: foreign Homepage: http://sourceforge.net/projects/placnet/ Description-md5: b986c8bedbeeec858c98e5b2c199b819 Section: science Priority: optional Filename: pool/main/p/placnet/placnet_1.04-1_all.deb Size: 10984 MD5sum: dc495be22cb75622f040600bd648c42c SHA256: d4cb862686dd693a00d11480143b16edda74f57681687be0ff196cf36875dc65 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt placnet=1.04-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt placnet=1.04-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp1s7_7ffl 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp1s7_7ffl 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/proc'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/proc'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/pts'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/pts'] 0m2.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/ptmx'] 0m2.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/ptmx'] 0m2.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/console'] 0m2.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/console'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/shm'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/shm'] 0m2.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.5s DEBUG: Created policy-rc.d and chmodded it. 0m2.5s DEBUG: Created resolv.conf. 0m2.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp1s7_7ffl/tmp/scripts/ 0m2.5s INFO: Running scripts post_chroot_unpack 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', 'update'] 0m4.8s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [128 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8290 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5688 kB] Fetched 14.1 MB in 2s (8113 kB/s) Reading package lists... 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', 'update'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: perl-base sysvinit-utils tzdata 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1937 kB of archives. After this operation, 67.6 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.32.1-6 [1626 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 sysvinit-utils amd64 3.00-1 [26.4 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2021a-2 [284 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1937 kB in 0s (13.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6657 files and directories currently installed.) Preparing to unpack .../perl-base_5.32.1-6_amd64.deb ... Unpacking perl-base (5.32.1-6) over (5.32.1-5) ... Setting up perl-base (5.32.1-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6657 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.00-1_amd64.deb ... Unpacking sysvinit-utils (3.00-1) over (2.96-7) ... Setting up sysvinit-utils (3.00-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6657 files and directories currently installed.) Preparing to unpack .../tzdata_2021a-2_all.deb ... Unpacking tzdata (2021a-2) over (2021a-1) ... Setting up tzdata (2021a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Sep 28 15:31:23 UTC 2021. Universal Time is now: Tue Sep 28 15:31:23 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s DUMP: 528acce0fd4b8c4335f791641dd6ff23 - 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s INFO: Running scripts post_setup 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_dummy_users'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_dummy_users'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_forbid_home'] 0m7.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_forbid_home'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_minimize'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_minimize'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_zz_backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_setup_zz_backports'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.9 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-3+b1 install ok installed bsdutils bsdutils 1:2.37.2-1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-1 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-11 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-7 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.9 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.5-1 install ok installed libblkid1:amd64 libblkid1 2.37.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.32-4 install ok installed libc6:amd64 libc6 2.32-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.25-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-3+b1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-2 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-10 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-10 install ok installed libpam-runtime libpam-runtime 1.4.0-10 install ok installed libpam0g:amd64 libpam0g 1.4.0-10 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-1 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-7 install ok installed libsystemd0:amd64 libsystemd0 247.9-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.17.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-4 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 247.9-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-1 install ok installed ncurses-base ncurses-base 6.2+20201114-4 install ok installed ncurses-bin ncurses-bin 6.2+20201114-4 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.00-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-2 install ok installed util-linux util-linux 2.37.2-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m8.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m8.1s INFO: Running scripts is_testable 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/is_testable_uninstallable'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/is_testable_uninstallable'] 0m8.1s INFO: Running scripts pre_test 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_test_exceptions'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_test_exceptions'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_test_root_password'] 0m8.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_test_root_password'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'show', '--no-all-versions', 'placnet'] 0m8.3s DUMP: Package: placnet Version: 1.03-3 Installed-Size: 38 Maintainer: Debian Med Packaging Team Architecture: all Depends: ncbi-blast+ Description-en: Plasmid Constellation Network project Placnet is a new tool for plasmid analysis in NGS projects. Placnet is optimized to work with Illumina sequences but it also works with 454, Iontorrent or any of the actual sequence technologies. . The input of placnet is a set of contigs and one or more SAM files with the mapping of the reads against the contigs. Placnet obtains a set of files, easily opened on Cytoscape software or other network tools. Description-md5: b986c8bedbeeec858c98e5b2c199b819 Homepage: http://sourceforge.net/projects/placnet/ Section: science Priority: optional Filename: pool/main/p/placnet/placnet_1.03-3_all.deb Size: 10712 MD5sum: 8eaa699eb59cdf5e00803deae66f9f21 SHA256: 2befbf79ade22fab9982864993d70783b8e095b1dbf749018b410c1ec6bfdaf0 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'show', '--no-all-versions', 'placnet'] 0m8.3s INFO: apt-cache knows about the following packages: placnet 0m8.3s INFO: Running scripts pre_install 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_database-server'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_database-server'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_exceptions'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_extras'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_extras'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy'] 0m8.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy', 'placnet'] 0m8.4s DUMP: placnet: Installed: (none) Candidate: 1.03-3 Version table: 1.03-3 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy', 'placnet'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', '-y', 'install', 'placnet'] 0m16.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libexpat1 libgdbm-compat4 libgdbm6 libgomp1 liblmdb0 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libncursesw6 libperl5.32 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 media-types ncbi-blast+ ncbi-data perl perl-modules-5.32 python3 python3-minimal python3.9 python3.9-minimal readline-common Suggested packages: gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binutils binfmt-support readline-doc Recommended packages: libgpm2 ca-certificates netbase The following NEW packages will be installed: libexpat1 libgdbm-compat4 libgdbm6 libgomp1 liblmdb0 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libncursesw6 libperl5.32 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 media-types ncbi-blast+ ncbi-data perl perl-modules-5.32 placnet python3 python3-minimal python3.9 python3.9-minimal readline-common 0 upgraded, 27 newly installed, 0 to remove and 0 not upgraded. Need to get 29.3 MB of archives. After this operation, 147 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.21-1 [77.7 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.21-1 [52.1 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.32.1-6 [293 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libpython3.9-minimal amd64 3.9.7-2 [804 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.4.1-2+b1 [104 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 python3.9-minimal amd64 3.9.7-2 [1964 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 media-types all 4.0.0 [30.3 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.2+20201114-4 [132 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.1-2 [73.8 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.1-2 [168 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libpython3.9-stdlib amd64 3.9.7-2 [1687 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 python3.9 amd64 3.9.7-2 [480 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 11.2.0-7 [106 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] Get:27 http://deb.debian.org/debian bookworm/main amd64 placnet all 1.03-3 [10.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.3 MB in 1s (46.2 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6659 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.21-1_amd64.deb ... Unpacking libgdbm6:amd64 (1.21-1) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.21-1_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.21-1) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../3-libperl5.32_5.32.1-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-6) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.32.1-6_amd64.deb ... Unpacking perl (5.32.1-6) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../5-libpython3.9-minimal_3.9.7-2_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.7-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../6-libexpat1_2.4.1-2+b1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.1-2+b1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.7-2_amd64.deb ... Unpacking python3.9-minimal (3.9.7-2) ... Setting up libpython3.9-minimal:amd64 (3.9.7-2) ... Setting up libexpat1:amd64 (2.4.1-2+b1) ... Setting up python3.9-minimal (3.9.7-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8927 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../3-libncursesw6_6.2+20201114-4_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.1-2_all.deb ... Unpacking readline-common (8.1-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../5-libreadline8_8.1-2_amd64.deb ... Unpacking libreadline8:amd64 (8.1-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.36.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.36.0-2) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.7-2_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.7-2) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.7-2_amd64.deb ... Unpacking python3.9 (3.9.7-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9366 files and directories currently installed.) Preparing to unpack .../0-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../1-libgomp1_11.2.0-7_amd64.deb ... Unpacking libgomp1:amd64 (11.2.0-7) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../2-liblmdb0_0.9.24-1_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.24-1) ... Selecting previously unselected package libmbedcrypto3:amd64. Preparing to unpack .../3-libmbedcrypto3_2.16.9-0.1_amd64.deb ... Unpacking libmbedcrypto3:amd64 (2.16.9-0.1) ... Selecting previously unselected package libmbedx509-0:amd64. Preparing to unpack .../4-libmbedx509-0_2.16.9-0.1_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.16.9-0.1) ... Selecting previously unselected package libmbedtls12:amd64. Preparing to unpack .../5-libmbedtls12_2.16.9-0.1_amd64.deb ... Unpacking libmbedtls12:amd64 (2.16.9-0.1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../6-ncbi-data_6.1.20170106+dfsg1-9_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-9) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../7-ncbi-blast+_2.11.0+ds-1_amd64.deb ... Unpacking ncbi-blast+ (2.11.0+ds-1) ... Selecting previously unselected package placnet. Preparing to unpack .../8-placnet_1.03-3_all.deb ... Unpacking placnet (1.03-3) ... Setting up media-types (4.0.0) ... Setting up liblmdb0:amd64 (0.9.24-1) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up perl-modules-5.32 (5.32.1-6) ... Setting up libsqlite3-0:amd64 (3.36.0-2) ... Setting up libgomp1:amd64 (11.2.0-7) ... Setting up libncursesw6:amd64 (6.2+20201114-4) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libmbedcrypto3:amd64 (2.16.9-0.1) ... Setting up readline-common (8.1-2) ... Setting up libgdbm6:amd64 (1.21-1) ... Setting up libmbedx509-0:amd64 (2.16.9-0.1) ... Setting up libreadline8:amd64 (8.1-2) ... Setting up libmbedtls12:amd64 (2.16.9-0.1) ... Setting up libgdbm-compat4:amd64 (1.21-1) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up libpython3.9-stdlib:amd64 (3.9.7-2) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up perl (5.32.1-6) ... Setting up python3.9 (3.9.7-2) ... Setting up python3 (3.9.2-3) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up placnet (1.03-3) ... Processing triggers for libc-bin (2.32-4) ... 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', '-y', 'install', 'placnet'] 0m16.9s INFO: Running scripts post_install 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_install_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_install_exceptions'] 0m16.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m17.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m17.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp1s7_7ffl to sid 0m17.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m17.6s INFO: Running scripts pre_distupgrade 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', 'update'] 0m26.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8775 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6566 kB] Fetched 15.5 MB in 8s (1834 kB/s) Reading package lists... 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', 'update'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', '-yf', 'dist-upgrade'] 0m30.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libcap2 libffi8 The following packages will be upgraded: base-passwd bsdutils debianutils gcc-11-base libblkid1 libgcc-s1 libgomp1 libmount1 libncursesw6 libp11-kit0 libpython3.9-minimal libpython3.9-stdlib libseccomp2 libsmartcols1 libstdc++6 libsystemd0 libtinfo6 libudev1 libuuid1 mount ncurses-base ncurses-bin placnet python3.9 python3.9-minimal util-linux 26 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 10.4 MB of archives. After this operation, 178 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.37.2-3 [150 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.5-1 [93.7 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.2+20210905-1 [133 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.2+20210905-1 [348 kB] Get:5 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.2+20210905-1 [434 kB] Get:6 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.37.2-3 [1196 kB] Get:7 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.5.52 [58.7 kB] Get:8 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.2+20210905-1 [277 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.44-1 [23.6 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 247.9-3 [376 kB] Get:11 http://deb.debian.org/debian sid/main amd64 mount amd64 2.37.2-3 [190 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3.9 amd64 3.9.7-4 [480 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3.9-stdlib amd64 3.9.7-4 [1688 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3.9-minimal amd64 3.9.7-4 [1963 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libpython3.9-minimal amd64 3.9.7-4 [804 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.2-2 [24.7 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.37.2-3 [84.6 kB] Get:18 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-8 [205 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-8 [577 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 11.2.0-8 [106 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-8 [42.0 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.37.2-3 [201 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.37.2-3 [218 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.24.0-2+b1 [345 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.2-1 [48.3 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.37.2-3 [161 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 247.9-3 [167 kB] Get:28 http://deb.debian.org/debian sid/main amd64 placnet all 1.04-1 [11.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.4 MB in 0s (51.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9650 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.37.2-3_amd64.deb ... Unpacking bsdutils (1:2.37.2-3) over (1:2.37.2-1) ... Setting up bsdutils (1:2.37.2-3) ... (Reading database ... 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Preparing to unpack .../libuuid1_2.37.2-3_amd64.deb ... Unpacking libuuid1:amd64 (2.37.2-3) over (2.37.2-1) ... Setting up libuuid1:amd64 (2.37.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9651 files and directories currently installed.) Preparing to unpack .../gcc-11-base_11.2.0-8_amd64.deb ... Unpacking gcc-11-base:amd64 (11.2.0-8) over (11.2.0-7) ... Setting up gcc-11-base:amd64 (11.2.0-8) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9652 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.37.2-3_amd64.deb ... Unpacking libsmartcols1:amd64 (2.37.2-3) over (2.37.2-1) ... Setting up libsmartcols1:amd64 (2.37.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9652 files and directories currently installed.) Preparing to unpack .../libudev1_247.9-3_amd64.deb ... Unpacking libudev1:amd64 (247.9-3) over (247.9-1) ... Setting up libudev1:amd64 (247.9-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9652 files and directories currently installed.) Preparing to unpack .../placnet_1.04-1_all.deb ... Unpacking placnet (1.04-1) over (1.03-3) ... Setting up placnet (1.04-1) ... Setting up libpython3.9-minimal:amd64 (3.9.7-4) ... Setting up libgomp1:amd64 (11.2.0-8) ... Setting up libncursesw6:amd64 (6.2+20210905-1) ... Setting up mount (2.37.2-3) ... Setting up python3.9-minimal (3.9.7-4) ... Setting up libpython3.9-stdlib:amd64 (3.9.7-4) ... Setting up python3.9 (3.9.7-4) ... Processing triggers for libc-bin (2.32-4) ... 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', '-yf', 'dist-upgrade'] 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m31.0s DUMP: 6a3695f4934fd2bc0f95136a742dbacd - 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'show', '--no-all-versions', 'placnet'] 0m31.2s DUMP: Package: placnet Version: 1.04-1 Installed-Size: 38 Maintainer: Debian Med Packaging Team Architecture: all Depends: ncbi-blast+ Description-en: Plasmid Constellation Network project Placnet is a new tool for plasmid analysis in NGS projects. Placnet is optimized to work with Illumina sequences but it also works with 454, Iontorrent or any of the actual sequence technologies. . The input of placnet is a set of contigs and one or more SAM files with the mapping of the reads against the contigs. Placnet obtains a set of files, easily opened on Cytoscape software or other network tools. Description-md5: b986c8bedbeeec858c98e5b2c199b819 Multi-Arch: foreign Homepage: http://sourceforge.net/projects/placnet/ Section: science Priority: optional Filename: pool/main/p/placnet/placnet_1.04-1_all.deb Size: 10984 MD5sum: dc495be22cb75622f040600bd648c42c SHA256: d4cb862686dd693a00d11480143b16edda74f57681687be0ff196cf36875dc65 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'show', '--no-all-versions', 'placnet'] 0m31.2s INFO: apt-cache knows about the following packages: placnet 0m31.2s INFO: Running scripts pre_install 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_database-server'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_database-server'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_exceptions'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_exceptions'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_extras'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_extras'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy'] 0m31.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy', 'placnet'] 0m31.3s DUMP: placnet: Installed: 1.04-1 Candidate: 1.04-1 Version table: *** 1.04-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy', 'placnet'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', '-y', 'install', 'placnet'] 0m31.6s DUMP: Reading package lists... Building dependency tree... Reading state information... placnet is already the newest version (1.04-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', '-y', 'install', 'placnet'] 0m31.6s INFO: Running scripts post_install 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_install_exceptions'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_install_exceptions'] 0m31.6s INFO: Running scripts post_distupgrade 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_distupgrade_exceptions'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_distupgrade_exceptions'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_distupgrade_zz_backports'] 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_distupgrade_zz_backports'] 0m31.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m32.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m32.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m32.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m32.4s INFO: Running scripts pre_install 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_database-server'] 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_database-server'] 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_exceptions'] 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_exceptions'] 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_extras'] 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_extras'] 0m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy'] 0m32.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy'] 0m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy', 'placnet'] 0m32.6s DUMP: placnet: Installed: 1.04-1 Candidate: 1.04-1 Version table: *** 1.04-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-cache', 'policy', 'placnet'] 0m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', '-y', 'install', 'placnet=1.04-1'] 0m33.1s DUMP: Reading package lists... Building dependency tree... Reading state information... placnet is already the newest version (1.04-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', '-y', 'install', 'placnet=1.04-1'] 0m33.1s INFO: Running scripts post_install 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_install_exceptions'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_install_exceptions'] 0m33.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m33.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m34.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', '-ac', '--ignore-obsolete'] 0m35.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', '-ac', '--ignore-obsolete'] 0m35.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m35.5s DUMP: 0.15.2 0m35.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m35.5s INFO: Running adequate version 0.15.2 now. 0m35.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'placnet'] 0m35.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'placnet'] 0m35.5s INFO: Running scripts pre_remove 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_exceptions'] 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/pre_remove_exceptions'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m36.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.9 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-3+b1 install ok installed bsdutils bsdutils 1:2.37.2-3 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-1 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.5-1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-11 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-8 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.9 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.5-1 install ok installed libblkid1:amd64 libblkid1 2.37.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.32-4 install ok installed libc6:amd64 libc6 2.32-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.25-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libexpat1:amd64 libexpat1 2.4.1-2+b1 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.2-2 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-3+b1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.21-1 install ok installed libgdbm6:amd64 libgdbm6 1.21-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgomp1:amd64 libgomp1 11.2.0-8 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblmdb0:amd64 liblmdb0 0.9.24-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0.1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0.1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0.1 install ok installed libmount1:amd64 libmount1 2.37.2-3 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libncursesw6:amd64 libncursesw6 6.2+20210905-1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-10 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-10 install ok installed libpam-runtime libpam-runtime 1.4.0-10 install ok installed libpam0g:amd64 libpam0g 1.4.0-10 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-6 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.7-4 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.7-4 install ok installed libreadline8:amd64 libreadline8 8.1-2 install ok installed libseccomp2:amd64 libseccomp2 2.5.2-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.36.0-2 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-8 install ok installed libsystemd0:amd64 libsystemd0 247.9-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.17.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20210905-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 247.9-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mount mount 2.37.2-3 install ok installed ncbi-blast+ ncbi-blast+ 2.11.0+ds-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-9 install ok installed ncurses-base ncurses-base 6.2+20210905-1 install ok installed ncurses-bin ncurses-bin 6.2+20210905-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-6 install ok installed perl-base perl-base 5.32.1-6 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-6 install ok installed placnet placnet 1.04-1 install ok installed python3 python3 3.9.2-3 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3.9 python3.9 3.9.7-4 install ok installed python3.9-minimal python3.9-minimal 3.9.7-4 install ok installed readline-common readline-common 8.1-2 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.00-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-2 install ok installed util-linux util-linux 2.37.2-3 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', 'remove', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'placnet'] 0m37.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libexpat1 libgdbm-compat4 libgdbm6 libgomp1 liblmdb0 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libncursesw6 libperl5.32 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 media-types ncbi-blast+ ncbi-data perl perl-modules-5.32 placnet python3 python3-minimal python3.9 python3.9-minimal readline-common 0 upgraded, 0 newly installed, 27 to remove and 0 not upgraded. After this operation, 147 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9653 files and directories currently installed.) Removing placnet (1.04-1) ... Removing ncbi-blast+ (2.11.0+ds-1) ... Removing python3 (3.9.2-3) ... Removing python3.9 (3.9.7-4) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9-minimal (3.9.7-4) ... Removing libexpat1:amd64 (2.4.1-2+b1) ... Removing perl (5.32.1-6) ... Removing libperl5.32:amd64 (5.32.1-6) ... Removing libgdbm-compat4:amd64 (1.21-1) ... Removing libgdbm6:amd64 (1.21-1) ... Removing libgomp1:amd64 (11.2.0-8) ... Removing liblmdb0:amd64 (0.9.24-1) ... Removing libmbedtls12:amd64 (2.16.9-0.1) ... Removing libmbedx509-0:amd64 (2.16.9-0.1) ... Removing libmbedcrypto3:amd64 (2.16.9-0.1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.7-4) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncursesw6:amd64 (6.2+20210905-1) ... Removing libpython3.9-minimal:amd64 (3.9.7-4) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.1-2) ... Removing libsqlite3-0:amd64 (3.36.0-2) ... Removing media-types (4.0.0) ... Removing ncbi-data (6.1.20170106+dfsg1-9) ... Removing perl-modules-5.32 (5.32.1-6) ... Removing readline-common (8.1-2) ... Processing triggers for libc-bin (2.32-4) ... 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', 'remove', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'placnet'] 0m37.6s INFO: Running scripts post_remove 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_remove_exceptions'] 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_remove_exceptions'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg', '--purge', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m37.7s DUMP: dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed (Reading database ... 6670 files and directories currently installed.) Purging configuration files for libpython3.9-minimal:amd64 (3.9.7-4) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for media-types (4.0.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-9) ... Purging configuration files for perl (5.32.1-6) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.7-4) ... Purging configuration files for readline-common (8.1-2) ... 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg', '--purge', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg', '--purge', 'placnet'] 0m37.8s DUMP: dpkg: warning: ignoring request to remove placnet which isn't installed 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg', '--purge', 'placnet'] 0m37.8s INFO: Running scripts post_purge 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_purge_exceptions'] 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_purge_exceptions'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg', '--purge', '--pending'] 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg', '--purge', '--pending'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg', '--remove', '--pending'] 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg', '--remove', '--pending'] 0m37.8s INFO: Running scripts post_test 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_test_exceptions'] 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'tmp/scripts/post_test_exceptions'] 0m37.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m38.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg-divert', '--list'] 0m38.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'dpkg-divert', '--list'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', 'clean'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl', 'apt-get', 'clean'] 0m38.1s DEBUG: Recording chroot state 0m38.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/shm'] 0m38.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/shm'] 0m38.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/console'] 0m38.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/console'] 0m38.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/ptmx'] 0m38.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/ptmx'] 0m38.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/pts'] 0m38.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/dev/pts'] 0m38.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/proc'] 0m38.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl/proc'] 0m38.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m39.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1s7_7ffl'] 0m39.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp1s7_7ffl 0m39.0s INFO: PASS: Upgrading between Debian distributions. 0m39.0s INFO: PASS: All tests. 0m39.0s INFO: piuparts run ends. ret=0 End: 2021-09-28 15:31:56 GMT