Start: 2020-10-31 00:01:43 GMT [testing] Package: prank Version: 0.0.170427+dfsg-2 Installed-Size: 1081 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Enhances: t-coffee Description: Probabilistic Alignment Kit for DNA, codon and amino-acid sequences Homepage: http://wasabiapp.org/software/prank/ Description-md5: 81d40a4b23a326a689d9cc8359a09fb6 Section: science Priority: optional Filename: pool/main/p/prank/prank_0.0.170427+dfsg-2_amd64.deb Size: 375360 MD5sum: 5cabaeacd87a3a60877a436b1d40fb50 SHA256: bec49d539e5c0ceac2f6b288b1ba8b04e7b9616135419229876ede4f306fe0d2 [sid] Package: prank Version: 0.0.170427+dfsg-3 Installed-Size: 1180 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9) Enhances: t-coffee Description: Probabilistic Alignment Kit for DNA, codon and amino-acid sequences Homepage: http://wasabiapp.org/software/prank/ Description-md5: 81d40a4b23a326a689d9cc8359a09fb6 Section: science Priority: optional Filename: pool/main/p/prank/prank_0.0.170427+dfsg-3_amd64.deb Size: 395252 MD5sum: cc9077fde22f9f7a1de3757958e6871c SHA256: deb60077ffd0a926d3d81c7b26be47e10a934409d0b1d10d2f2228bb4a2409d6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt prank=0.0.170427+dfsg-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.2~202004292056~1.1.1-20-gd7155993 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt prank=0.0.170427+dfsg-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp9qnpovgr 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp9qnpovgr 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp9qnpovgr/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', 'update'] 0m5.0s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [7811 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [5973 kB] Fetched 13.9 MB in 2s (5594 kB/s) Reading package lists... 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', 'update'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg6.0 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2454 kB of archives. After this operation, 4096 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libapt-pkg6.0 amd64 2.1.11 [995 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 apt amd64 2.1.11 [1459 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2454 kB in 0s (24.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6651 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.1.11_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.1.11) over (2.1.10) ... Setting up libapt-pkg6.0:amd64 (2.1.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6651 files and directories currently installed.) Preparing to unpack .../archives/apt_2.1.11_amd64.deb ... Unpacking apt (2.1.11) over (2.1.10) ... Setting up apt (2.1.11) ... Processing triggers for libc-bin (2.31-4) ... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.1s DUMP: c69c406be9bca17e855f6739e601cbc8 - 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.1s INFO: Running scripts post_setup 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_dummy_users'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_dummy_users'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_forbid_home'] 0m8.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_forbid_home'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.11 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.48 install ok installed bash bash 5.1~rc1-2 install ok installed bsdutils bsdutils 1:2.36-3+b1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-15 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-18 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.58 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.11 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3.1 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3.1 install ok installed libblkid1:amd64 libblkid1 2.36-3+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-4 install ok installed libc6:amd64 libc6 2.31-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.254 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-15 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.6-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-6 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-10 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-10 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-10 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-10 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36-3+b1 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnss-nis:amd64 libnss-nis 3.1-4 install ok installed libnss-nisplus:amd64 libnss-nisplus 1.3-4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.4.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.1-2+b1 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36-3+b1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1g-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-15 install ok installed libsystemd0:amd64 libsystemd0 246.6-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20200918-1 install ok installed libtirpc-common libtirpc-common 1.2.6-3 install ok installed libtirpc3:amd64 libtirpc3 1.2.6-3 install ok installed libudev1:amd64 libudev1 246.6-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36-3+b1 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36-3+b1 install ok installed ncurses-base ncurses-base 6.2+20200918-1 install ok installed ncurses-bin ncurses-bin 6.2+20200918-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.3-4 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2020d-1 install ok installed util-linux util-linux 2.36-3+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m8.4s INFO: Running scripts is_testable 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/is_testable_uninstallable'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/is_testable_uninstallable'] 0m8.4s INFO: Running scripts pre_test 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_test_exceptions'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_test_exceptions'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_test_root_password'] 0m8.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_test_root_password'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'show', '--no-all-versions', 'prank'] 0m8.6s DUMP: Package: prank Version: 0.0.170427+dfsg-2 Installed-Size: 1081 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Enhances: t-coffee Description-en: Probabilistic Alignment Kit for DNA, codon and amino-acid sequences PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences. . PRANK is a command-line program for UNIX-style environments but the same sequence alignment engine is implemented in the graphical program PRANKSTER. In addition to providing a user-friendly interface to those not familiar with Unix systems, PRANKSTER is an alignment browser for alignments saved in the HSAML format. The novel format allows for storing all the information generated by the aligner and the alignment browser is a convenient way to analyse and manipulate the data. . PRANK aims at an evolutionarily correct sequence alignment and often the result looks different from ones generated with other alignment methods. There are, however, cases where the different look is caused by violations of the method's assumptions. To understand why things may go wrong and how to avoid that, read this explanation of differences between PRANK and traditional progressive alignment methods. Description-md5: 81d40a4b23a326a689d9cc8359a09fb6 Homepage: http://wasabiapp.org/software/prank/ Section: science Priority: optional Filename: pool/main/p/prank/prank_0.0.170427+dfsg-2_amd64.deb Size: 375360 MD5sum: 5cabaeacd87a3a60877a436b1d40fb50 SHA256: bec49d539e5c0ceac2f6b288b1ba8b04e7b9616135419229876ede4f306fe0d2 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'show', '--no-all-versions', 'prank'] 0m8.6s INFO: apt-cache knows about the following packages: prank 0m8.6s INFO: Running scripts pre_install 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_database-server'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_database-server'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_extras'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_extras'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy'] 0m8.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy', 'prank'] 0m8.7s DUMP: prank: Installed: (none) Candidate: 0.0.170427+dfsg-2 Version table: 0.0.170427+dfsg-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy', 'prank'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', '-y', 'install', 'prank'] 0m9.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: prank 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 375 kB of archives. After this operation, 1107 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 prank amd64 0.0.170427+dfsg-2 [375 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 375 kB in 0s (6715 kB/s) Selecting previously unselected package prank. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6653 files and directories currently installed.) Preparing to unpack .../prank_0.0.170427+dfsg-2_amd64.deb ... Unpacking prank (0.0.170427+dfsg-2) ... Setting up prank (0.0.170427+dfsg-2) ... 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', '-y', 'install', 'prank'] 0m9.3s INFO: Running scripts post_install 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_install_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_install_exceptions'] 0m9.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m9.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m9.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp9qnpovgr to sid 0m9.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m9.6s INFO: Running scripts pre_distupgrade 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', 'update'] 0m13.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [146 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8497 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6391 kB] Fetched 15.0 MB in 3s (5690 kB/s) Reading package lists... 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', 'update'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', '-yf', 'dist-upgrade'] 0m14.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: findutils gcc-10-base libdebconfclient0 libgcc-s1 libgcrypt20 libssl1.1 libstdc++6 prank 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3986 kB of archives. After this operation, 144 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.7.0+git20201010-2 [694 kB] Get:2 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.2.0-16 [200 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 10.2.0-16 [493 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 10.2.0-16 [41.4 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.255 [49.6 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.8.7-2 [563 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libssl1.1 amd64 1.1.1h-1 [1550 kB] Get:8 http://deb.debian.org/debian sid/main amd64 prank amd64 0.0.170427+dfsg-3 [395 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3986 kB in 0s (19.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6663 files and directories currently installed.) Preparing to unpack .../findutils_4.7.0+git20201010-2_amd64.deb ... Unpacking findutils (4.7.0+git20201010-2) over (4.7.0-1) ... Setting up findutils (4.7.0+git20201010-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6663 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10.2.0-16_amd64.deb ... Unpacking gcc-10-base:amd64 (10.2.0-16) over (10.2.0-15) ... Setting up gcc-10-base:amd64 (10.2.0-16) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6663 files and directories currently installed.) Preparing to unpack .../libstdc++6_10.2.0-16_amd64.deb ... Unpacking libstdc++6:amd64 (10.2.0-16) over (10.2.0-15) ... Setting up libstdc++6:amd64 (10.2.0-16) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6663 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10.2.0-16_amd64.deb ... Unpacking libgcc-s1:amd64 (10.2.0-16) over (10.2.0-15) ... Setting up libgcc-s1:amd64 (10.2.0-16) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6663 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.255_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.255) over (0.254) ... Setting up libdebconfclient0:amd64 (0.255) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6663 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.7-2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.8.7-2) over (1.8.6-2) ... Setting up libgcrypt20:amd64 (1.8.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6663 files and directories currently installed.) Preparing to unpack .../libssl1.1_1.1.1h-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1h-1) over (1.1.1g-1) ... Setting up libssl1.1:amd64 (1.1.1h-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6662 files and directories currently installed.) Preparing to unpack .../prank_0.0.170427+dfsg-3_amd64.deb ... Unpacking prank (0.0.170427+dfsg-3) over (0.0.170427+dfsg-2) ... Setting up prank (0.0.170427+dfsg-3) ... Processing triggers for libc-bin (2.31-4) ... 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', '-yf', 'dist-upgrade'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.2s DUMP: 28b32c801a1dcadcf9e689f6f518183f - 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'show', '--no-all-versions', 'prank'] 0m15.4s DUMP: Package: prank Version: 0.0.170427+dfsg-3 Installed-Size: 1180 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9) Enhances: t-coffee Description-en: Probabilistic Alignment Kit for DNA, codon and amino-acid sequences PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences. . PRANK is a command-line program for UNIX-style environments but the same sequence alignment engine is implemented in the graphical program PRANKSTER. In addition to providing a user-friendly interface to those not familiar with Unix systems, PRANKSTER is an alignment browser for alignments saved in the HSAML format. The novel format allows for storing all the information generated by the aligner and the alignment browser is a convenient way to analyse and manipulate the data. . PRANK aims at an evolutionarily correct sequence alignment and often the result looks different from ones generated with other alignment methods. There are, however, cases where the different look is caused by violations of the method's assumptions. To understand why things may go wrong and how to avoid that, read this explanation of differences between PRANK and traditional progressive alignment methods. Description-md5: 81d40a4b23a326a689d9cc8359a09fb6 Homepage: http://wasabiapp.org/software/prank/ Section: science Priority: optional Filename: pool/main/p/prank/prank_0.0.170427+dfsg-3_amd64.deb Size: 395252 MD5sum: cc9077fde22f9f7a1de3757958e6871c SHA256: deb60077ffd0a926d3d81c7b26be47e10a934409d0b1d10d2f2228bb4a2409d6 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'show', '--no-all-versions', 'prank'] 0m15.4s INFO: apt-cache knows about the following packages: prank 0m15.4s INFO: Running scripts pre_install 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_database-server'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_database-server'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_exceptions'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_exceptions'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy'] 0m15.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy', 'prank'] 0m15.6s DUMP: prank: Installed: 0.0.170427+dfsg-3 Candidate: 0.0.170427+dfsg-3 Version table: *** 0.0.170427+dfsg-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy', 'prank'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', '-y', 'install', 'prank'] 0m16.1s DUMP: Reading package lists... Building dependency tree... Reading state information... prank is already the newest version (0.0.170427+dfsg-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', '-y', 'install', 'prank'] 0m16.1s INFO: Running scripts post_install 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_install_exceptions'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_install_exceptions'] 0m16.1s INFO: Running scripts post_distupgrade 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m16.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m16.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m16.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m16.6s INFO: Running scripts pre_install 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_database-server'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_database-server'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_exceptions'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_exceptions'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_extras'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_extras'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy'] 0m16.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy', 'prank'] 0m16.7s DUMP: prank: Installed: 0.0.170427+dfsg-3 Candidate: 0.0.170427+dfsg-3 Version table: *** 0.0.170427+dfsg-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-cache', 'policy', 'prank'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', '-y', 'install', 'prank=0.0.170427+dfsg-3'] 0m17.2s DUMP: Reading package lists... Building dependency tree... Reading state information... prank is already the newest version (0.0.170427+dfsg-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', '-y', 'install', 'prank=0.0.170427+dfsg-3'] 0m17.2s INFO: Running scripts post_install 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_install_exceptions'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_install_exceptions'] 0m17.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m17.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m17.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', '-ac', '--ignore-obsolete'] 0m18.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', '-ac', '--ignore-obsolete'] 0m18.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.5s DUMP: 0.15.2 0m18.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.5s INFO: Running adequate version 0.15.2 now. 0m18.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'prank'] 0m18.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'prank'] 0m18.6s INFO: Running scripts pre_remove 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_exceptions'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/pre_remove_exceptions'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.4s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.11 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.48 install ok installed bash bash 5.1~rc1-2 install ok installed bsdutils bsdutils 1:2.36-3+b1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0+git20201010-2 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-16 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-18 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.58 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.11 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3.1 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3.1 install ok installed libblkid1:amd64 libblkid1 2.36-3+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-4 install ok installed libc6:amd64 libc6 2.31-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.255 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-16 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-6 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-10 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-10 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-10 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-10 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36-3+b1 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnss-nis:amd64 libnss-nis 3.1-4 install ok installed libnss-nisplus:amd64 libnss-nisplus 1.3-4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.4.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.1-2+b1 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36-3+b1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1h-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-16 install ok installed libsystemd0:amd64 libsystemd0 246.6-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20200918-1 install ok installed libtirpc-common libtirpc-common 1.2.6-3 install ok installed libtirpc3:amd64 libtirpc3 1.2.6-3 install ok installed libudev1:amd64 libudev1 246.6-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36-3+b1 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36-3+b1 install ok installed ncurses-base ncurses-base 6.2+20200918-1 install ok installed ncurses-bin ncurses-bin 6.2+20200918-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.3-4 install ok installed prank prank 0.0.170427+dfsg-3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2020d-1 install ok installed util-linux util-linux 2.36-3+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', 'remove', 'prank'] 0m20.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: prank 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 1208 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6662 files and directories currently installed.) Removing prank (0.0.170427+dfsg-3) ... 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', 'remove', 'prank'] 0m20.1s INFO: Running scripts post_remove 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_remove_exceptions'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_remove_exceptions'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg', '--purge', 'prank'] 0m20.1s DUMP: dpkg: warning: ignoring request to remove prank which isn't installed 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg', '--purge', 'prank'] 0m20.1s INFO: Running scripts post_purge 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_purge_exceptions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_purge_exceptions'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg', '--purge', '--pending'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg', '--purge', '--pending'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg', '--remove', '--pending'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg', '--remove', '--pending'] 0m20.2s INFO: Running scripts post_test 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_test_exceptions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'tmp/scripts/post_test_exceptions'] 0m20.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m20.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg-divert', '--list'] 0m20.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'dpkg-divert', '--list'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', 'clean'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr', 'apt-get', 'clean'] 0m20.4s DEBUG: Recording chroot state 0m21.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/shm'] 0m21.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/shm'] 0m21.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/console'] 0m21.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/console'] 0m21.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/ptmx'] 0m21.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/ptmx'] 0m21.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/pts'] 0m21.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/dev/pts'] 0m21.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/proc'] 0m21.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr/proc'] 0m21.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m21.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9qnpovgr'] 0m21.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp9qnpovgr 0m21.2s INFO: PASS: Upgrading between Debian distributions. 0m21.2s INFO: PASS: All tests. 0m21.2s INFO: piuparts run ends. ret=0 End: 2020-10-31 00:02:05 GMT