Start: 2023-12-19 21:45:03 GMT [testing] Package: proda Version: 1.0-13 Installed-Size: 156 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5) Description: multiple alignment of protein sequences Homepage: http://proda.stanford.edu/ Description-md5: a4af9732493dab9dac9eed761a23a635 Tag: biology::peptidic, field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, scope::utility, use::analysing, use::comparing, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/p/proda/proda_1.0-13_amd64.deb Size: 64864 MD5sum: 8b11857b383fd97b9977bb32c81f1f3d SHA256: 8e50a525761fa669b441bc1b83e451971bc857500d28af2705a6c2ba1b09f815 [sid] Package: proda Version: 1.0-14 Installed-Size: 158 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11) Description: multiple alignment of protein sequences Homepage: http://proda.stanford.edu/ Description-md5: a4af9732493dab9dac9eed761a23a635 Tag: biology::peptidic, field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, scope::utility, use::analysing, use::comparing, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/p/proda/proda_1.0-14_amd64.deb Size: 65436 MD5sum: 20c25fc9115237d59c1d043ffbd76c39 SHA256: 1bf23cb3154d7b7b749598c220309ccaeadbfdd92f466208c66e8f1c0b9c76e0 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt proda=1.0-14 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt proda=1.0-14 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-26-amd64 #1 SMP Debian 5.10.197-1 (2023-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp76_xylrg 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp76_xylrg 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/proc'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/proc'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp76_xylrg/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', 'update'] 0m3.5s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8787 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6109 kB] Fetched 15.0 MB in 1s (10.3 MB/s) Reading package lists... 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', 'update'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files libc-bin libc6 libgnutls30 libsystemd0 libudev1 perl-base tzdata 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7179 kB of archives. After this operation, 5120 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u4 [70.8 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.36.0-7+deb12u1 [1608 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u3 [2755 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u3 [606 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libgnutls30 amd64 3.7.9-2+deb12u1 [1404 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.19-1~deb12u1 [331 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.19-1~deb12u1 [108 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2023c-5+deb12u1 [296 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7179 kB in 0s (100 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../base-files_12.4+deb12u4_amd64.deb ... Unpacking base-files (12.4+deb12u4) over (12.4+deb12u2) ... Setting up base-files (12.4+deb12u4) ... Installing new version of config file /etc/debian_version ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../perl-base_5.36.0-7+deb12u1_amd64.deb ... Unpacking perl-base (5.36.0-7+deb12u1) over (5.36.0-7) ... Setting up perl-base (5.36.0-7+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../libc6_2.36-9+deb12u3_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u3) over (2.36-9+deb12u2) ... Setting up libc6:amd64 (2.36-9+deb12u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u3_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u3) over (2.36-9+deb12u2) ... Setting up libc-bin (2.36-9+deb12u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.9-2+deb12u1_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.9-2+deb12u1) over (3.7.9-2) ... Setting up libgnutls30:amd64 (3.7.9-2+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.19-1~deb12u1_amd64.deb ... Unpacking libsystemd0:amd64 (252.19-1~deb12u1) over (252.17-1~deb12u1) ... Setting up libsystemd0:amd64 (252.19-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../libudev1_252.19-1~deb12u1_amd64.deb ... Unpacking libudev1:amd64 (252.19-1~deb12u1) over (252.17-1~deb12u1) ... Setting up libudev1:amd64 (252.19-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../tzdata_2023c-5+deb12u1_all.deb ... Unpacking tzdata (2023c-5+deb12u1) over (2023c-5) ... Setting up tzdata (2023c-5+deb12u1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Dec 19 21:45:09 UTC 2023. Universal Time is now: Tue Dec 19 21:45:09 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.36-9+deb12u3) ... 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s DUMP: c39ed9ca72afa1f69a1eea88b0965329 - 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s INFO: Running scripts post_setup 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_dummy_users'] 0m6.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_dummy_users'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_forbid_home'] 0m6.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_forbid_home'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.8s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u4 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u3 install ok installed libc6:amd64 libc6 2.36-9+deb12u3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.19-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.19-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-5+deb12u1 install ok installed usr-is-merged usr-is-merged 35 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m7.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m7.2s INFO: Running scripts is_testable 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s INFO: Running scripts pre_test 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_test_root_password'] 0m7.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_test_root_password'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'show', '--no-all-versions', 'proda'] 0m7.4s DUMP: Package: proda Version: 1.0-13 Installed-Size: 156 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5) Description-en: multiple alignment of protein sequences ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions. Description-md5: a4af9732493dab9dac9eed761a23a635 Homepage: http://proda.stanford.edu/ Tag: biology::peptidic, field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, scope::utility, use::analysing, use::comparing, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/p/proda/proda_1.0-13_amd64.deb Size: 64864 MD5sum: 8b11857b383fd97b9977bb32c81f1f3d SHA256: 8e50a525761fa669b441bc1b83e451971bc857500d28af2705a6c2ba1b09f815 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'show', '--no-all-versions', 'proda'] 0m7.4s INFO: apt-cache knows about the following packages: proda 0m7.4s INFO: Running scripts pre_install 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_database-server'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_database-server'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_exceptions'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_exceptions'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_extras'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_extras'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy'] 0m7.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.4,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy', 'proda'] 0m7.5s DUMP: proda: Installed: (none) Candidate: 1.0-13 Version table: 1.0-13 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy', 'proda'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', '-y', 'install', 'proda'] 0m8.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: proda 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 64.9 kB of archives. After this operation, 160 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 proda amd64 1.0-13 [64.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 64.9 kB in 0s (2731 kB/s) Selecting previously unselected package proda. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6100 files and directories currently installed.) Preparing to unpack .../proda_1.0-13_amd64.deb ... Unpacking proda (1.0-13) ... Setting up proda (1.0-13) ... 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', '-y', 'install', 'proda'] 0m8.1s INFO: Running scripts post_install 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_install_exceptions'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_install_exceptions'] 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m8.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp76_xylrg to sid 0m8.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m8.4s INFO: Running scripts pre_distupgrade 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', 'update'] 0m12.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9603 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7079 kB] Fetched 16.9 MB in 3s (5390 kB/s) Reading package lists... 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', 'update'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', '-yf', 'dist-upgrade'] 0m21.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-13-base libssl3 libunistring5 The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils coreutils dash debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils gcc-12-base grep init-system-helpers libapt-pkg6.0 libaudit-common libaudit1 libblkid1 libc-bin libc6 libcap-ng0 libcom-err2 libcrypt1 libdb5.3 libdebconfclient0 libext2fs2 libffi8 libgcc-s1 libgcrypt20 libgmp10 libgnutls30 libgpg-error0 libhogweed6 libidn2-0 liblzma5 libmd0 libmount1 libnettle8 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libss2 libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libudev1 libuuid1 libxxhash0 libzstd1 login logsave mawk mount ncurses-base ncurses-bin passwd perl-base proda sysvinit-utils tar tzdata usr-is-merged util-linux util-linux-extra zlib1g 78 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 32.9 MB of archives. After this operation, 9873 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13 [70.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.14 [88.3 kB] Get:3 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:4 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-2 [96.7 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-13 [2753 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-13 [602 kB] Get:7 http://deb.debian.org/debian sid/main amd64 gcc-13-base amd64 13.2.0-9 [41.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 13.2.0-9 [57.7 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2 [557 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.1.4-2 [2058 kB] Get:11 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-2+b1 [2948 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 13.2.0-9 [694 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:16 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.4.5-0.1 [239 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255-1 [360 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255-1 [122 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2 [26.4 kB] Get:20 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3 [87.5 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.7.7 [946 kB] Get:22 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.3 [837 kB] Get:23 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.2 [1562 kB] Get:24 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:25 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:26 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:27 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-3 [431 kB] Get:28 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-3 [616 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20231209-1 [341 kB] Get:30 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20231209-1 [430 kB] Get:31 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.36.0-10 [1602 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-2 [159 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4 [261 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-1+b1 [74.5 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-2 [190 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-1 [11.2 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.3-3 [16.9 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-1 [48.2 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-2 [116 kB] Get:40 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.39.3-2 [155 kB] Get:41 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-2 [1229 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.9.1-2 [295 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.4-2 [23.5 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-3 [418 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.1-2 [421 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.9.1-2 [327 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.4-1+b1 [125 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3 [48.3 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.8.2-1 [1424 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271 [9940 B] Get:51 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-2 [89.7 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-9.1 [65.5 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:55 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b1 [90.3 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-9.1 [49.9 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-9.1 [264 kB] Get:59 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-3 [972 kB] Get:60 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:61 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.4-2+b1 [47.1 kB] Get:63 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.7 [1362 kB] Get:64 http://deb.debian.org/debian sid/main amd64 usr-is-merged all 38 [5504 B] Get:65 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:66 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20231209-1 [267 kB] Get:67 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-5 [32.1 kB] Get:68 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2+b1 [19.9 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libext2fs2 amd64 1.47.0-2+b1 [205 kB] Get:70 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2+b1 [572 kB] Get:71 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-2 [143 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-9.1 [134 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4 [697 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-1 [35.5 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.39.3-2 [29.6 kB] Get:76 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20231126-1 [136 kB] Get:77 http://deb.debian.org/debian sid/main amd64 tzdata all 2023c-11 [252 kB] Get:78 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.3.0-13 [41.0 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.0-2+b1 [20.1 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.0-2+b1 [24.8 kB] Get:81 http://deb.debian.org/debian sid/main amd64 proda amd64 1.0-14 [65.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.9 MB in 0s (136 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6108 files and directories currently installed.) Preparing to unpack .../base-files_13_amd64.deb ... Unpacking base-files (13) over (12.4+deb12u4) ... Setting up base-files (13) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6108 files and directories currently installed.) Preparing to unpack .../debianutils_5.14_amd64.deb ... Unpacking debianutils (5.14) over (5.7-0.5~deb12u1) ... Setting up debianutils (5.14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6107 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2_amd64.deb ... Unpacking bash (5.2.21-2) over (5.2.15-2+b2) ... Setting up bash (5.2.21-2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6129 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.2_amd64.deb ... Unpacking dpkg (1.22.2) over (1.21.22) ... Setting up dpkg (1.22.2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6123 files and directories currently installed.) Preparing to unpack .../perl-base_5.36.0-10_amd64.deb ... Unpacking perl-base (5.36.0-10) over (5.36.0-7+deb12u1) ... Setting up perl-base (5.36.0-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6123 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.3-2_amd64.deb ... Unpacking libblkid1:amd64 (2.39.3-2) over (2.38.1-5+b1) ... Setting up libblkid1:amd64 (2.39.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6122 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-4_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.42-4) over (10.42-1) ... Setting up libpcre2-8-0:amd64 (10.42-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6122 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-1+b1_amd64.deb ... Unpacking libselinux1:amd64 (3.5-1+b1) over (3.4-1+b6) ... Setting up libselinux1:amd64 (3.5-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6122 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.3-2_amd64.deb ... Unpacking libmount1:amd64 (2.39.3-2) over (2.38.1-5+b1) ... Setting up libmount1:amd64 (2.39.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6121 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.1.2-1_all.deb ... Unpacking libaudit-common (1:3.1.2-1) over (1:3.0.9-1) ... Setting up libaudit-common (1:3.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6121 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-3_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.3-3) over (0.8.3-1+b3) ... Setting up libcap-ng0:amd64 (0.8.3-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6120 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-1_amd64.deb ... Unpacking libaudit1:amd64 (1:3.1.2-1) over (1:3.0.9-1) ... Setting up libaudit1:amd64 (1:3.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6120 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.39.3-2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.39.3-2) over (2.38.1-5+b1) ... Setting up libsmartcols1:amd64 (2.39.3-2) ... (Reading database ... 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Unpacking util-linux-extra (2.39.3-2) over (2.38.1-5+b1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty Setting up util-linux-extra (2.39.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6123 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.3-2_amd64.deb ... Unpacking util-linux (2.39.3-2) over (2.38.1-5+b1) ... Setting up util-linux (2.39.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6125 files and directories currently installed.) Preparing to unpack .../libnettle8_3.9.1-2_amd64.deb ... Unpacking libnettle8:amd64 (3.9.1-2) over (3.8.1-2) ... Setting up libnettle8:amd64 (3.9.1-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6115 files and directories currently installed.) Preparing to unpack .../0-mawk_1.3.4.20231126-1_amd64.deb ... Unpacking mawk (1.3.4.20231126-1) over (1.3.4.20200120-3.1) ... Preparing to unpack .../1-tzdata_2023c-11_all.deb ... Unpacking tzdata (2023c-11) over (2023c-5+deb12u1) ... Preparing to unpack .../2-gcc-12-base_12.3.0-13_amd64.deb ... Unpacking gcc-12-base:amd64 (12.3.0-13) over (12.2.0-14) ... Preparing to unpack .../3-libcom-err2_1.47.0-2+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.0-2+b1) over (1.47.0-2) ... Preparing to unpack .../4-libss2_1.47.0-2+b1_amd64.deb ... Unpacking libss2:amd64 (1.47.0-2+b1) over (1.47.0-2) ... Preparing to unpack .../5-proda_1.0-14_amd64.deb ... Unpacking proda (1.0-14) over (1.0-13) ... Setting up libcom-err2:amd64 (1.47.0-2+b1) ... Setting up gcc-12-base:amd64 (12.3.0-13) ... Setting up tzdata (2023c-11) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Dec 19 21:45:25 UTC 2023. Universal Time is now: Tue Dec 19 21:45:25 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up proda (1.0-14) ... Setting up libss2:amd64 (1.47.0-2+b1) ... Setting up logsave (1.47.0-2+b1) ... Setting up mount (2.39.3-2) ... Setting up mawk (1.3.4.20231126-1) ... Setting up e2fsprogs (1.47.0-2+b1) ... Processing triggers for libc-bin (2.37-13) ... Processing triggers for debianutils (5.14) ... 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', '-yf', 'dist-upgrade'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m22.4s DUMP: 205c998ebd94d4ea9ac602e768082b6d - 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'show', '--no-all-versions', 'proda'] 0m22.7s DUMP: Package: proda Version: 1.0-14 Installed-Size: 158 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11) Description-en: multiple alignment of protein sequences ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions. Description-md5: a4af9732493dab9dac9eed761a23a635 Homepage: http://proda.stanford.edu/ Tag: biology::peptidic, field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, scope::utility, use::analysing, use::comparing, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/p/proda/proda_1.0-14_amd64.deb Size: 65436 MD5sum: 20c25fc9115237d59c1d043ffbd76c39 SHA256: 1bf23cb3154d7b7b749598c220309ccaeadbfdd92f466208c66e8f1c0b9c76e0 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'show', '--no-all-versions', 'proda'] 0m22.7s INFO: apt-cache knows about the following packages: proda 0m22.7s INFO: Running scripts pre_install 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_database-server'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_database-server'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_exceptions'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_exceptions'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_extras'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_extras'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy'] 0m22.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy'] 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy', 'proda'] 0m22.8s DUMP: proda: Installed: 1.0-14 Candidate: 1.0-14 Version table: *** 1.0-14 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy', 'proda'] 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', '-y', 'install', 'proda'] 0m23.2s DUMP: Reading package lists... Building dependency tree... Reading state information... proda is already the newest version (1.0-14). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', '-y', 'install', 'proda'] 0m23.2s INFO: Running scripts post_install 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_install_exceptions'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_install_exceptions'] 0m23.2s INFO: Running scripts post_distupgrade 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m23.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m23.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m23.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m23.8s INFO: Running scripts pre_install 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_database-server'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_database-server'] 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_exceptions'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_exceptions'] 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_extras'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_extras'] 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy'] 0m23.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy', 'proda'] 0m24.0s DUMP: proda: Installed: 1.0-14 Candidate: 1.0-14 Version table: *** 1.0-14 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-cache', 'policy', 'proda'] 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', '-y', 'install', 'proda=1.0-14'] 0m24.3s DUMP: Reading package lists... Building dependency tree... Reading state information... proda is already the newest version (1.0-14). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', '-y', 'install', 'proda=1.0-14'] 0m24.3s INFO: Running scripts post_install 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_install_exceptions'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_install_exceptions'] 0m24.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m24.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m24.6s INFO: /bin converted to /usr/bin by /usr merge 0m24.6s INFO: /lib converted to /usr/lib by /usr merge 0m24.6s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m24.6s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m24.6s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m24.6s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m24.6s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m24.6s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m24.6s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m24.6s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m24.6s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m24.6s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m24.6s INFO: /sbin converted to /usr/sbin by /usr merge 0m24.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', '-ac', '--ignore-obsolete'] 0m25.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', '-ac', '--ignore-obsolete'] 0m25.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.4s DUMP: 0.15.6 0m25.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.4s INFO: Running adequate version 0.15.6 now. 0m25.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'proda'] 0m25.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'proda'] 0m25.5s INFO: Running scripts pre_remove 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_exceptions'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/pre_remove_exceptions'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.2s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.7 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-2 install ok installed coreutils coreutils 9.4-2+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.14 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.2 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-12-base:amd64 gcc-12-base 12.3.0-13 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-9 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.11-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.7 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-1 install ok installed libblkid1:amd64 libblkid1 2.39.3-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.37-13 install ok installed libc6:amd64 libc6 2.37-13 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libgcc-s1:amd64 libgcc-s1 13.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.2-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.4-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmount1:amd64 libmount1 2.39.3-2 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-3 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-2+b1 install ok installed libselinux1:amd64 libselinux1 3.5-1+b1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b1 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-2 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.4-2 install ok installed libstdc++6:amd64 libstdc++6 13.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 255-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.4+20231209-1 install ok installed libudev1:amd64 libudev1 255-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20231126-1 install ok installed mount mount 2.39.3-2 install ok installed ncurses-base ncurses-base 6.4+20231209-1 install ok installed ncurses-bin ncurses-bin 6.4+20231209-1 install ok installed passwd passwd 1:4.13+dfsg1-3 install ok installed perl-base perl-base 5.36.0-10 install ok installed proda proda 1.0-14 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.08-5 install ok installed tar tar 1.34+dfsg-1.3 install ok installed tzdata tzdata 2023c-11 install ok installed usr-is-merged usr-is-merged 38 install ok installed util-linux util-linux 2.39.3-2 install ok installed util-linux-extra util-linux-extra 2.39.3-2 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', 'remove', 'proda'] 0m26.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: proda 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 162 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5334 files and directories currently installed.) Removing proda (1.0-14) ... 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', 'remove', 'proda'] 0m26.9s INFO: Running scripts post_remove 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_remove_exceptions'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_remove_exceptions'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg', '--purge', 'proda'] 0m26.9s DUMP: dpkg: warning: ignoring request to remove proda which isn't installed 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg', '--purge', 'proda'] 0m26.9s INFO: Running scripts post_purge 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_purge_exceptions'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_purge_exceptions'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg', '--purge', '--pending'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg', '--purge', '--pending'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg', '--remove', '--pending'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg', '--remove', '--pending'] 0m26.9s INFO: Running scripts post_test 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_test_exceptions'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'tmp/scripts/post_test_exceptions'] 0m26.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m27.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg-divert', '--list'] 0m27.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'dpkg-divert', '--list'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', 'clean'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp76_xylrg', 'apt-get', 'clean'] 0m27.4s DEBUG: Recording chroot state 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/shm'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/shm'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/console'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/console'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/ptmx'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/ptmx'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/pts'] 0m28.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/dev/pts'] 0m28.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/proc'] 0m28.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp76_xylrg/proc'] 0m28.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m28.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp76_xylrg'] 0m28.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp76_xylrg 0m28.8s INFO: PASS: Upgrading between Debian distributions. 0m28.8s INFO: PASS: All tests. 0m28.8s INFO: piuparts run ends. ret=0 End: 2023-12-19 21:45:32 GMT