Start: 2022-01-20 06:33:08 GMT [testing] Package: profnet-bval Source: profnet Version: 1.0.22-7 Installed-Size: 128 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.27), libgfortran5 (>= 8) Suggests: profbval Description: neural network architecture for profbval Homepage: https://www.predictprotein.org/ Description-md5: ca0ed7b177934f382705f2d7475a8e90 Section: science Priority: optional Filename: pool/main/p/profnet/profnet-bval_1.0.22-7_amd64.deb Size: 45412 MD5sum: c59bb67d782185cd3e9140df3e967ed9 SHA256: 8a23e3573fde37da6a3a583c8167e6dd64181f6d66c0f608f623b37b39197393 [sid] Package: profnet-bval Source: profnet Version: 1.0.22-8 Installed-Size: 129 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.27), libgfortran5 (>= 8) Suggests: profbval Description: neural network architecture for profbval Homepage: https://www.predictprotein.org/ Description-md5: ca0ed7b177934f382705f2d7475a8e90 Section: science Priority: optional Filename: pool/main/p/profnet/profnet-bval_1.0.22-8_amd64.deb Size: 45480 MD5sum: 4eb10440c9ad1b2c04cccc1e7e6ddbeb SHA256: b53de028a6c9eb0166ac500038c9c3aa12c25d1e1422bb574683e3d92c885b21 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt profnet-bval=1.0.22-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt profnet-bval=1.0.22-8 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-18-amd64 #1 SMP Debian 4.19.208-1 (2021-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpw4_dfs13 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpw4_dfs13 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/proc'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/proc'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/pts'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/pts'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/ptmx'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/ptmx'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/console'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/console'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/shm'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/shm'] 0m2.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.3s DEBUG: Created policy-rc.d and chmodded it. 0m2.3s DEBUG: Created resolv.conf. 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpw4_dfs13/tmp/scripts/ 0m2.4s INFO: Running scripts post_chroot_unpack 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', 'update'] 0m5.1s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [129 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8253 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5671 kB] Fetched 14.1 MB in 2s (6426 kB/s) Reading package lists... 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', 'update'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', '-yf', 'dist-upgrade'] 0m5.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libxxhash0 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 27.6 kB of archives. After this operation, 15.4 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 libxxhash0 amd64 0.8.1-1 [27.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.6 kB in 0s (1181 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.1-1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.1-1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.1-1) ... Processing triggers for libc-bin (2.33-2) ... 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', '-yf', 'dist-upgrade'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.0s DUMP: 02e136897430fe05b5c9089ae4258cc6 - 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.0s INFO: Running scripts post_setup 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.6s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.14 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.2-6 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-13 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-13 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.61 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.14 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-2 install ok installed libc6:amd64 libc6 2.33-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-13 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-6 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-6 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-13 install ok installed libsystemd0:amd64 libsystemd0 250.2-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.2-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-6 install ok installed ncurses-base ncurses-base 6.3-1 install ok installed ncurses-bin ncurses-bin 6.3-1 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl-base perl-base 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m6.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m6.9s INFO: Running scripts is_testable 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/is_testable_uninstallable'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/is_testable_uninstallable'] 0m6.9s INFO: Running scripts pre_test 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_test_exceptions'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_test_exceptions'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_test_root_password'] 0m7.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_test_root_password'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'show', '--no-all-versions', 'profnet-bval'] 0m7.1s DUMP: Package: profnet-bval Source: profnet Version: 1.0.22-7 Installed-Size: 128 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.27), libgfortran5 (>= 8) Suggests: profbval Description-en: neural network architecture for profbval Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. . This package contains the neural network architecture for profbval. Description-md5: ca0ed7b177934f382705f2d7475a8e90 Homepage: https://www.predictprotein.org/ Section: science Priority: optional Filename: pool/main/p/profnet/profnet-bval_1.0.22-7_amd64.deb Size: 45412 MD5sum: c59bb67d782185cd3e9140df3e967ed9 SHA256: 8a23e3573fde37da6a3a583c8167e6dd64181f6d66c0f608f623b37b39197393 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'show', '--no-all-versions', 'profnet-bval'] 0m7.1s INFO: apt-cache knows about the following packages: profnet-bval 0m7.1s INFO: Running scripts pre_install 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_database-server'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_database-server'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_exceptions'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_exceptions'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_extras'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_extras'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy'] 0m7.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy', 'profnet-bval'] 0m7.3s DUMP: profnet-bval: Installed: (none) Candidate: 1.0.22-7 Version table: 1.0.22-7 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy', 'profnet-bval'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', '-y', 'install', 'profnet-bval'] 0m8.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libgfortran5 libquadmath0 Suggested packages: profbval The following NEW packages will be installed: libgfortran5 libquadmath0 profnet-bval 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 900 kB of archives. After this operation, 3300 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 11.2.0-13 [145 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 11.2.0-13 [709 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 profnet-bval amd64 1.0.22-7 [45.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 900 kB in 0s (12.7 MB/s) Selecting previously unselected package libquadmath0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6676 files and directories currently installed.) Preparing to unpack .../libquadmath0_11.2.0-13_amd64.deb ... Unpacking libquadmath0:amd64 (11.2.0-13) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../libgfortran5_11.2.0-13_amd64.deb ... Unpacking libgfortran5:amd64 (11.2.0-13) ... Selecting previously unselected package profnet-bval. Preparing to unpack .../profnet-bval_1.0.22-7_amd64.deb ... Unpacking profnet-bval (1.0.22-7) ... Setting up libquadmath0:amd64 (11.2.0-13) ... Setting up libgfortran5:amd64 (11.2.0-13) ... Setting up profnet-bval (1.0.22-7) ... Processing triggers for libc-bin (2.33-2) ... 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', '-y', 'install', 'profnet-bval'] 0m8.1s INFO: Running scripts post_install 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_install_exceptions'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_install_exceptions'] 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m8.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m8.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpw4_dfs13 to sid 0m8.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m8.5s INFO: Running scripts pre_distupgrade 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', 'update'] 0m11.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8889 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6669 kB] Fetched 15.7 MB in 2s (6503 kB/s) Reading package lists... 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', 'update'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', '-yf', 'dist-upgrade'] 0m14.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files debianutils gcc-10-base gcc-11-base libc-bin libc6 libffi8 libgcc-s1 libgfortran5 libgpg-error0 libquadmath0 libstdc++6 libsystemd0 libtinfo6 libudev1 ncurses-base ncurses-bin profnet-bval 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7511 kB of archives. After this operation, 8192 B disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 12.2 [70.1 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.5-1 [93.7 kB] Get:3 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.3-2 [439 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-14 [207 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-14 [42.0 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 11.2.0-14 [144 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 11.2.0-14 [710 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-14 [577 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.33-3 [2831 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.33-3 [829 kB] Get:11 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.3-2 [278 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 250.3-1 [404 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.2-4 [24.7 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.43-3 [82.2 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.3-2 [349 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 250.3-1 [178 kB] Get:17 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.3.0-14 [206 kB] Get:18 http://deb.debian.org/debian sid/main amd64 profnet-bval amd64 1.0.22-8 [45.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7511 kB in 0s (68.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6689 files and directories currently installed.) Preparing to unpack .../base-files_12.2_amd64.deb ... Unpacking base-files (12.2) over (12) ... Setting up base-files (12.2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6685 files and directories currently installed.) Preparing to unpack .../libquadmath0_11.2.0-14_amd64.deb ... Unpacking libquadmath0:amd64 (11.2.0-14) over (11.2.0-13) ... Preparing to unpack .../libgfortran5_11.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (11.2.0-14) over (11.2.0-13) ... Preparing to unpack .../libstdc++6_11.2.0-14_amd64.deb ... Unpacking libstdc++6:amd64 (11.2.0-14) over (11.2.0-13) ... Setting up libstdc++6:amd64 (11.2.0-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6685 files and directories currently installed.) Preparing to unpack .../libc6_2.33-3_amd64.deb ... Unpacking libc6:amd64 (2.33-3) over (2.33-2) ... Setting up libc6:amd64 (2.33-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6685 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.3-2_all.deb ... Unpacking ncurses-base (6.3-2) over (6.3-1) ... Setting up ncurses-base (6.3-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6686 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.3-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.3-2) over (6.3-1) ... Setting up libtinfo6:amd64 (6.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6685 files and directories currently installed.) Preparing to unpack .../libudev1_250.3-1_amd64.deb ... Unpacking libudev1:amd64 (250.3-1) over (250.2-3) ... Setting up libudev1:amd64 (250.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6685 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10.3.0-14_amd64.deb ... Unpacking gcc-10-base:amd64 (10.3.0-14) over (10.3.0-13) ... Preparing to unpack .../profnet-bval_1.0.22-8_amd64.deb ... Unpacking profnet-bval (1.0.22-8) over (1.0.22-7) ... Setting up gcc-10-base:amd64 (10.3.0-14) ... Setting up libquadmath0:amd64 (11.2.0-14) ... Setting up libgfortran5:amd64 (11.2.0-14) ... Setting up profnet-bval (1.0.22-8) ... Processing triggers for libc-bin (2.33-3) ... 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', '-yf', 'dist-upgrade'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.6s DUMP: e0ace0113e2ef479c46bb5a10f0ceb9c - 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'show', '--no-all-versions', 'profnet-bval'] 0m14.8s DUMP: Package: profnet-bval Source: profnet Version: 1.0.22-8 Installed-Size: 129 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.27), libgfortran5 (>= 8) Suggests: profbval Description-en: neural network architecture for profbval Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture. . This package contains the neural network architecture for profbval. Description-md5: ca0ed7b177934f382705f2d7475a8e90 Homepage: https://www.predictprotein.org/ Section: science Priority: optional Filename: pool/main/p/profnet/profnet-bval_1.0.22-8_amd64.deb Size: 45480 MD5sum: 4eb10440c9ad1b2c04cccc1e7e6ddbeb SHA256: b53de028a6c9eb0166ac500038c9c3aa12c25d1e1422bb574683e3d92c885b21 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'show', '--no-all-versions', 'profnet-bval'] 0m14.8s INFO: apt-cache knows about the following packages: profnet-bval 0m14.8s INFO: Running scripts pre_install 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_database-server'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_database-server'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_exceptions'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_exceptions'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_extras'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_extras'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy'] 0m14.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy', 'profnet-bval'] 0m14.9s DUMP: profnet-bval: Installed: 1.0.22-8 Candidate: 1.0.22-8 Version table: *** 1.0.22-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy', 'profnet-bval'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', '-y', 'install', 'profnet-bval'] 0m15.3s DUMP: Reading package lists... Building dependency tree... Reading state information... profnet-bval is already the newest version (1.0.22-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', '-y', 'install', 'profnet-bval'] 0m15.3s INFO: Running scripts post_install 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_install_exceptions'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_install_exceptions'] 0m15.3s INFO: Running scripts post_distupgrade 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_distupgrade_exceptions'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_distupgrade_exceptions'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_distupgrade_zz_backports'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_distupgrade_zz_backports'] 0m15.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m15.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m15.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m16.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m16.3s INFO: Running scripts pre_install 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_database-server'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_database-server'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_exceptions'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_exceptions'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_extras'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_extras'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy'] 0m16.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy', 'profnet-bval'] 0m16.4s DUMP: profnet-bval: Installed: 1.0.22-8 Candidate: 1.0.22-8 Version table: *** 1.0.22-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-cache', 'policy', 'profnet-bval'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', '-y', 'install', 'profnet-bval=1.0.22-8'] 0m16.9s DUMP: Reading package lists... Building dependency tree... Reading state information... profnet-bval is already the newest version (1.0.22-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', '-y', 'install', 'profnet-bval=1.0.22-8'] 0m16.9s INFO: Running scripts post_install 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_install_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_install_exceptions'] 0m16.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m17.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m17.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', '-ac', '--ignore-obsolete'] 0m18.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', '-ac', '--ignore-obsolete'] 0m18.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.3s DUMP: 0.15.2 0m18.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.3s INFO: Running adequate version 0.15.2 now. 0m18.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'profnet-bval'] 0m18.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'profnet-bval'] 0m18.4s INFO: Running scripts pre_remove 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_exceptions'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/pre_remove_exceptions'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.14 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.2-6 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.5-1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-14 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-14 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.61 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.14 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-3 install ok installed libc6:amd64 libc6 2.33-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgfortran5:amd64 libgfortran5 11.2.0-14 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-6 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libquadmath0:amd64 libquadmath0 11.2.0-14 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-6 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 250.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.3-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-6 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl-base perl-base 5.32.1-6 install ok installed profnet-bval profnet-bval 1.0.22-8 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', 'remove', 'libgfortran5:amd64', 'libquadmath0:amd64', 'profnet-bval'] 0m19.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libgfortran5 libquadmath0 profnet-bval 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. After this operation, 3301 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6685 files and directories currently installed.) Removing profnet-bval (1.0.22-8) ... Removing libgfortran5:amd64 (11.2.0-14) ... Removing libquadmath0:amd64 (11.2.0-14) ... Processing triggers for libc-bin (2.33-3) ... 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', 'remove', 'libgfortran5:amd64', 'libquadmath0:amd64', 'profnet-bval'] 0m19.6s INFO: Running scripts post_remove 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_remove_exceptions'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_remove_exceptions'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg', '--purge', 'libgfortran5:amd64', 'libquadmath0:amd64'] 0m19.6s DUMP: dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg', '--purge', 'libgfortran5:amd64', 'libquadmath0:amd64'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg', '--purge', 'profnet-bval'] 0m19.6s DUMP: dpkg: warning: ignoring request to remove profnet-bval which isn't installed 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg', '--purge', 'profnet-bval'] 0m19.6s INFO: Running scripts post_purge 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_purge_exceptions'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_purge_exceptions'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg', '--purge', '--pending'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg', '--purge', '--pending'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg', '--remove', '--pending'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg', '--remove', '--pending'] 0m19.7s INFO: Running scripts post_test 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_test_exceptions'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'tmp/scripts/post_test_exceptions'] 0m19.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m20.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg-divert', '--list'] 0m20.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'dpkg-divert', '--list'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', 'clean'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13', 'apt-get', 'clean'] 0m20.1s DEBUG: Recording chroot state 0m20.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/shm'] 0m20.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/shm'] 0m20.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/console'] 0m20.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/console'] 0m20.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/ptmx'] 0m20.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/ptmx'] 0m20.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/pts'] 0m20.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/dev/pts'] 0m20.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/proc'] 0m20.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13/proc'] 0m20.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m20.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw4_dfs13'] 0m20.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpw4_dfs13 0m20.9s INFO: PASS: Upgrading between Debian distributions. 0m20.9s INFO: PASS: All tests. 0m20.9s INFO: piuparts run ends. ret=0 End: 2022-01-20 06:33:30 GMT