Start: 2022-12-06 04:34:31 GMT [testing] Package: prottest Version: 3.4.2+dfsg-7 Installed-Size: 494 Maintainer: Debian Med Packaging Team Architecture: all Depends: alter-sequence-alignment, libbetter-appframework-java, libmpj-java, libpal-java, java-wrappers, phyml Description: selection of best-fit models of protein evolution Homepage: https://github.com/ddarriba/prottest3 Description-md5: 1454155e5ec803ebc286ba865e4e36cf Section: science Priority: optional Filename: pool/main/p/prottest/prottest_3.4.2+dfsg-7_all.deb Size: 346396 MD5sum: c1f64c1784b1e2880149aefd3685fe27 SHA256: 08e4380786b6b018bbf99cee10714bd55a71c68512bb9ccd8aa596c19287b30d [sid] Package: prottest Version: 3.4.2+dfsg-8 Installed-Size: 497 Maintainer: Debian Med Packaging Team Architecture: all Depends: alter-sequence-alignment, libbetter-appframework-java, libmpj-java, libpal-java, java-wrappers, phyml Description: selection of best-fit models of protein evolution Homepage: https://github.com/ddarriba/prottest3 Description-md5: 1454155e5ec803ebc286ba865e4e36cf Section: science Priority: optional Filename: pool/main/p/prottest/prottest_3.4.2+dfsg-8_all.deb Size: 349408 MD5sum: a06031a7ae99584bd928a58420b40835 SHA256: dfa70adb2a2779431f5836cb3e1278c422667494f5481b03691e8b3bb22a1375 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt prottest=3.4.2+dfsg-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt prottest=3.4.2+dfsg-8 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp6f9n1sza 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp6f9n1sza 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/proc'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/proc'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/pts'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/pts'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp6f9n1sza/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', 'update'] 0m5.4s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [164 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8791 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5936 kB] Fetched 14.9 MB in 3s (5527 kB/s) Reading package lists... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', 'update'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: debconf libacl1 libc-bin libc6 libsystemd0 libudev1 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3929 kB of archives. After this operation, 24.6 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-6 [2745 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-6 [604 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 debconf all 1.5.80 [121 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libacl1 amd64 2.3.1-2 [25.2 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.2-1 [329 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.2-1 [106 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3929 kB in 0s (61.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../libc6_2.36-6_amd64.deb ... Unpacking libc6:amd64 (2.36-6) over (2.36-5) ... Setting up libc6:amd64 (2.36-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-6_amd64.deb ... Unpacking libc-bin (2.36-6) over (2.36-5) ... Setting up libc-bin (2.36-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../debconf_1.5.80_all.deb ... Unpacking debconf (1.5.80) over (1.5.79) ... Setting up debconf (1.5.80) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.1-2_amd64.deb ... Unpacking libacl1:amd64 (2.3.1-2) over (2.3.1-1) ... Setting up libacl1:amd64 (2.3.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8595 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.2-1_amd64.deb ... Unpacking libsystemd0:amd64 (252.2-1) over (252.1-1) ... Setting up libsystemd0:amd64 (252.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8595 files and directories currently installed.) Preparing to unpack .../libudev1_252.2-1_amd64.deb ... Unpacking libudev1:amd64 (252.2-1) over (252.1-1) ... Setting up libudev1:amd64 (252.2-1) ... Processing triggers for libc-bin (2.36-6) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.6s DUMP: 0fe0b0cb226b1007aec7cb2a884b614e - 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.6s INFO: Running scripts post_setup 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_dummy_users'] 0m8.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_dummy_users'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_forbid_home'] 0m8.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_forbid_home'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9+b1 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-6 install ok installed libc6:amd64 libc6 2.36-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.8-0.0 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 252.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 252.2-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 0m9.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 0m9.3s INFO: Running scripts is_testable 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s INFO: Running scripts pre_test 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_test_root_password'] 0m9.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_test_root_password'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'show', '--no-all-versions', 'prottest'] 0m9.6s DUMP: Package: prottest Version: 3.4.2+dfsg-7 Installed-Size: 494 Maintainer: Debian Med Packaging Team Architecture: all Depends: alter-sequence-alignment, libbetter-appframework-java, libmpj-java, libpal-java, java-wrappers, phyml Description-en: selection of best-fit models of protein evolution PROTTEST (ModelTest's relative) is a program for selecting the model of protein evolution that best fits a given set of sequences (alignment). This java program is based on the Phyml program (for maximum likelihood calculations and optimization of parameters) and uses the PAL library as well. Models included are empirical substitution matrices (such as WAG, LG, mtREV, Dayhoff, DCMut, JTT, VT, Blosum62, CpREV, RtREV, MtMam, MtArt, HIVb, and HIVw) that indicate relative rates of amino acid replacement, and specific improvements (+I:invariable sites, +G: rate heterogeneity among sites, +F: observed amino acid frequencies) to account for the evolutionary constraints impossed by conservation of protein structure and function. ProtTest uses the Akaike Information Criterion (AIC) and other statistics (AICc and BIC) to find which of the candidate models best fits the data at hand. Description-md5: 1454155e5ec803ebc286ba865e4e36cf Homepage: https://github.com/ddarriba/prottest3 Section: science Priority: optional Filename: pool/main/p/prottest/prottest_3.4.2+dfsg-7_all.deb Size: 346396 MD5sum: c1f64c1784b1e2880149aefd3685fe27 SHA256: 08e4380786b6b018bbf99cee10714bd55a71c68512bb9ccd8aa596c19287b30d 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'show', '--no-all-versions', 'prottest'] 0m9.6s INFO: apt-cache knows about the following packages: prottest 0m9.6s INFO: Running scripts pre_install 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_database-server'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_database-server'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_exceptions'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_exceptions'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_extras'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_extras'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy'] 0m9.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy', 'prottest'] 0m9.7s DUMP: prottest: Installed: (none) Candidate: 3.4.2+dfsg-7 Version table: 3.4.2+dfsg-7 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy', 'prottest'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', '-y', 'install', 'prottest'] 0m36.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser adwaita-icon-theme alter-sequence-alignment at-spi2-common ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig fontconfig-config fonts-dejavu-core gtk-update-icon-cache hicolor-icon-theme ibverbs-providers java-common java-wrappers libapache-pom-java libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbetter-appframework-java libbrotli1 libbsd0 libcairo2 libcbor0.8 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdatrie1 libdbus-1-3 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblerc4 libllvm15 liblog4j1.2-java libmd0 libmpj-java libmunge2 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libopenmpi3 libpal-java libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libpixman-1-0 libpmix2 libpng16-16 libpsm-infinipath1 libpsm2-2 librdmacm1 libsensors-config libsensors5 libsqlite3-0 libssl3 libthai-data libthai0 libtiff5 libucx0 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 ocl-icd-libopencl1 openjdk-17-jre openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl phyml sensible-utils shared-mime-info ucf unzip x11-common Suggested packages: liblocale-gettext-perl cron libasound2-plugins alsa-utils libcommons-io-java-doc cups-common low-memory-monitor krb5-doc krb5-user gvfs libhwloc-contrib-plugins liblcms2-utils liblog4j1.2-java-doc libmail-java pciutils pcscd lm-sensors opencl-icd libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass zip Recommended packages: librsvg2-common alsa-ucm-conf alsa-topology-conf dbus libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libgail-common libgtk2.0-bin krb5-locales libatk-wrapper-java-jni fonts-dejavu-extra xauth The following NEW packages will be installed: adduser adwaita-icon-theme alter-sequence-alignment at-spi2-common ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig fontconfig-config fonts-dejavu-core gtk-update-icon-cache hicolor-icon-theme ibverbs-providers java-common java-wrappers libapache-pom-java libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbetter-appframework-java libbrotli1 libbsd0 libcairo2 libcbor0.8 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdatrie1 libdbus-1-3 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblerc4 libllvm15 liblog4j1.2-java libmd0 libmpj-java libmunge2 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libopenmpi3 libpal-java libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libpixman-1-0 libpmix2 libpng16-16 libpsm-infinipath1 libpsm2-2 librdmacm1 libsensors-config libsensors5 libsqlite3-0 libssl3 libthai-data libthai0 libtiff5 libucx0 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 ocl-icd-libopencl1 openjdk-17-jre openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl phyml prottest sensible-utils shared-mime-info ucf unzip x11-common 0 upgraded, 153 newly installed, 0 to remove and 0 not upgraded. Need to get 136 MB of archives. After this operation, 547 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 adduser all 3.129 [131 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.7-1 [2008 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.7-1 [1400 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20211016 [156 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-1 [117 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2 [76.8 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-1 [32.2 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-1 [78.6 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-1 [331 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-1 [134 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.1p1-1 [971 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043 [74.0 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.2-1 [1394 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 shared-mime-info amd64 2.2-1 [729 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.2-1+b1 [169 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.2-2+b2 [280 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libtiff5 amd64 4.4.0-6 [302 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.10+dfsg-1 [138 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 gtk-update-icon-cache amd64 3.24.35-2 [42.2 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 adwaita-icon-theme all 43-1 [5124 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20220719 [16.1 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.73 [6268 B] Get:36 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-6+b1 [106 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-6+b1 [41.1 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.4-1 [235 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-6+b1 [44.9 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-1+b2 [243 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.13.1-1+b1 [153 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b5 [279 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [420 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.13.1-4.5 [281 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.13.1-4.5 [351 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.0-1 [838 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.85-1 [1333 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.8-1 [20.5 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.8-1 [362 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 5.2.0-2+b1 [1886 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.9-1 [60.8 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre-headless amd64 17.0.5+8-2 [43.6 MB] Get:57 http://deb.debian.org/debian bookworm/main amd64 default-jre-headless amd64 2:1.17-73 [2812 B] Get:58 http://deb.debian.org/debian bookworm/main amd64 libgtk2.0-common all 2.24.33-2 [2700 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 at-spi2-common all 2.46.0-4 [161 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libatk1.0-0 amd64 2.46.0-4 [49.5 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.1-2 [308 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.1-2 [772 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-6 [587 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.13.1-4.5 [417 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.10+ds-1 [239 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.10+ds-1 [75.4 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.10+ds-1 [62.4 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libxcomposite1 amd64 1:0.4.5-1 [16.6 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libxcursor1 amd64 1:1.2.1-1 [40.9 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libxinerama1 amd64 2:1.1.4-3 [17.8 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libxrandr2 amd64 2:1.5.2-2+b1 [39.2 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libgtk2.0-0 amd64 2.24.33-2 [1855 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.5.0-1 [49.2 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.114-1 [7112 B] Get:90 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.114-1 [37.2 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 22.2.4-1 [34.5 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.8.1-2 [203 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:100 http://deb.debian.org/debian bookworm/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.114-1 [20.6 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.114-1 [18.8 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.114-1 [21.6 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-1 [172 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3 [7216 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 libllvm15 amd64 1:15.0.6-2 [23.1 MB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 22.2.4-1 [7067 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 22.2.4-1 [147 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.5.0-1 [35.7 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libgl1 amd64 1.5.0-1 [89.4 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libgif7 amd64 5.2.1-2.5 [46.9 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libxtst6 amd64 2:1.2.3-1.1 [28.0 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre amd64 17.0.5+8-2 [167 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 default-jre amd64 2:1.17-73 [1060 B] Get:118 http://deb.debian.org/debian bookworm/main amd64 alter-sequence-alignment all 1.3.4-6 [776 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 42.0-1+b1 [60.8 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 42.0-1+b1 [323 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-27 [172 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 java-wrappers all 0.3 [10.9 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 25-2 [5260 B] Get:126 http://deb.debian.org/debian bookworm/main amd64 libbetter-appframework-java all 1.9.2-1.1 [170 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 libcommons-cli-java all 1.5.0-1 [60.0 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libcommons-codec-java all 1.15-1 [292 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libcommons-io-java all 2.11.0-2 [319 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-5+b1 [137 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-5+b1 [57.9 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.15-1 [24.9 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 42.0-1+b1 [68.8 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.11.0-3 [521 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 510.85.02-2 [27.7 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.8.0-1 [158 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.8.0-1 [22.1 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 liblog4j1.2-java all 1.2.17-11 [444 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 libmpj-java all 0.44+dfsg-4 [447 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.14-6+b1 [19.7 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1 [621 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3 [2423 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 libpal-java all 1.5.1+dfsg-8 [690 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 openmpi-common all 4.1.4-3 [167 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 openmpi-bin amd64 4.1.4-3 [226 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 phyml amd64 3:3.3.20220408-3 [1103 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 prottest all 3.4.2+dfsg-7 [346 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 MB in 1s (239 MB/s) Selecting previously unselected package adduser. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8597 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.129_all.deb ... Unpacking adduser (3.129) ... Setting up adduser (3.129) ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8670 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../001-libssl3_3.0.7-1_amd64.deb ... Unpacking libssl3:amd64 (3.0.7-1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.7-1_amd64.deb ... Unpacking openssl (3.0.7-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../004-libmd0_1.0.4-2_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../005-libbsd0_0.11.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../006-libedit2_3.1-20221030-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20221030-2) ... Selecting previously unselected package libcbor0.8:amd64. Preparing to unpack .../007-libcbor0.8_0.8.0-2+b1_amd64.deb ... Unpacking libcbor0.8:amd64 (0.8.0-2+b1) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../008-libfido2-1_1.12.0-2_amd64.deb ... Unpacking libfido2-1:amd64 (1.12.0-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../009-libkrb5support0_1.20.1-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../010-libk5crypto3_1.20.1-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../011-libkeyutils1_1.6.3-1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../012-libkrb5-3_1.20.1-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../013-libgssapi-krb5-2_1.20.1-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../014-openssh-client_1%3a9.1p1-1_amd64.deb ... Unpacking openssh-client (1:9.1p1-1) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../016-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../017-libgdk-pixbuf2.0-common_2.42.10+dfsg-1_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../018-libglib2.0-0_2.74.2-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.74.2-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../019-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../020-libxml2_2.9.14+dfsg-1.1+b2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../021-shared-mime-info_2.2-1_amd64.deb ... Unpacking shared-mime-info (2.2-1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../022-libjpeg62-turbo_1%3a2.1.2-1+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../023-libpng16-16_1.6.39-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../024-libdeflate0_1.14-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.14-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../025-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../026-liblerc4_4.0.0+ds-2_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-2) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../027-libwebp7_1.2.2-2+b2_amd64.deb ... Unpacking libwebp7:amd64 (1.2.2-2+b2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../028-libtiff5_4.4.0-6_amd64.deb ... Unpacking libtiff5:amd64 (4.4.0-6) ... Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. Preparing to unpack .../029-libgdk-pixbuf-2.0-0_2.42.10+dfsg-1_amd64.deb ... Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../030-gtk-update-icon-cache_3.24.35-2_amd64.deb ... Unpacking gtk-update-icon-cache (3.24.35-2) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../031-adwaita-icon-theme_43-1_all.deb ... Unpacking adwaita-icon-theme (43-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../032-ca-certificates-java_20220719_all.deb ... Unpacking ca-certificates-java (20220719) ... Selecting previously unselected package java-common. Preparing to unpack .../033-java-common_0.73_all.deb ... Unpacking java-common (0.73) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../034-libavahi-common-data_0.8-6+b1_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-6+b1) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../035-libavahi-common3_0.8-6+b1_amd64.deb ... Unpacking libavahi-common3:amd64 (0.8-6+b1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../036-libdbus-1-3_1.14.4-1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.14.4-1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../037-libavahi-client3_0.8-6+b1_amd64.deb ... Unpacking libavahi-client3:amd64 (0.8-6+b1) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../038-libcups2_2.4.2-1+b2_amd64.deb ... Unpacking libcups2:amd64 (2.4.2-1+b2) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../039-liblcms2-2_2.13.1-1+b1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.13.1-1+b1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../040-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../041-libbrotli1_1.0.9-2+b5_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b5) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../042-libfreetype6_2.12.1+dfsg-3_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../043-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../044-fontconfig-config_2.13.1-4.5_amd64.deb ... Unpacking fontconfig-config (2.13.1-4.5) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../045-libfontconfig1_2.13.1-4.5_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.5) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../046-libnspr4_2%3a4.35-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.35-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../047-libsqlite3-0_3.40.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.0-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../048-libnss3_2%3a3.85-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.85-1) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../049-libasound2-data_1.2.8-1_all.deb ... Unpacking libasound2-data (1.2.8-1) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../050-libasound2_1.2.8-1_amd64.deb ... Unpacking libasound2:amd64 (1.2.8-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../051-libgraphite2-3_1.3.14-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../052-libharfbuzz0b_5.2.0-2+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (5.2.0-2+b1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../053-libpcsclite1_1.9.9-1_amd64.deb ... Unpacking libpcsclite1:amd64 (1.9.9-1) ... Selecting previously unselected package openjdk-17-jre-headless:amd64. Preparing to unpack .../054-openjdk-17-jre-headless_17.0.5+8-2_amd64.deb ... Unpacking openjdk-17-jre-headless:amd64 (17.0.5+8-2) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../055-default-jre-headless_2%3a1.17-73_amd64.deb ... Unpacking default-jre-headless (2:1.17-73) ... Selecting previously unselected package libgtk2.0-common. Preparing to unpack .../056-libgtk2.0-common_2.24.33-2_all.deb ... Unpacking libgtk2.0-common (2.24.33-2) ... Selecting previously unselected package at-spi2-common. Preparing to unpack .../057-at-spi2-common_2.46.0-4_all.deb ... Unpacking at-spi2-common (2.46.0-4) ... Selecting previously unselected package libatk1.0-0:amd64. Preparing to unpack .../058-libatk1.0-0_2.46.0-4_amd64.deb ... Unpacking libatk1.0-0:amd64 (2.46.0-4) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../059-libpixman-1-0_0.42.2-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.42.2-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../060-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../061-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../062-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../063-libx11-data_2%3a1.8.1-2_all.deb ... Unpacking libx11-data (2:1.8.1-2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../064-libx11-6_2%3a1.8.1-2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.1-2) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../065-libxcb-render0_1.15-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.15-1) ... Selecting previously unselected package libxcb-shm0:amd64. 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Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up java-common (0.73) ... Setting up libdatrie1:amd64 (0.2.13-2+b1) ... Setting up libcommons-cli-java (1.5.0-1) ... Setting up libglib2.0-0:amd64 (2.74.2-1) ... No schema files found: doing nothing. Setting up libglvnd0:amd64 (1.5.0-1) ... Setting up unzip (6.0-27) ... Setting up libcbor0.8:amd64 (0.8.0-2+b1) ... Setting up libbrotli1:amd64 (1.0.9-2+b5) ... Setting up libsqlite3-0:amd64 (3.40.0-1) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Setting up libssl3:amd64 (3.0.7-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libsensors-config (1:3.6.0-7.1) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up liblog4j1.2-java (1.2.17-11) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libkrb5support0:amd64 (1.20.1-1) ... Setting up libasound2-data (1.2.8-1) ... Setting up libz3-4:amd64 (4.8.12-3) ... Setting up libmunge2 (0.5.14-6+b1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Setting up libx11-data (2:1.8.1-2) ... Setting up libnspr4:amd64 (2:4.35-1) ... Setting up libapache-pom-java (25-2) ... Setting up libavahi-common-data:amd64 (0.8-6+b1) ... Setting up libdbus-1-3:amd64 (1.14.4-1) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libhwloc15:amd64 (2.8.0-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-5+b1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libpcsclite1:amd64 (1.9.9-1) ... Setting up libsensors5:amd64 (1:3.6.0-7.1) ... Setting up libk5crypto3:amd64 (1.20.1-1) ... Setting up libpal-java (1.5.1+dfsg-8) ... Setting up libglapi-mesa:amd64 (22.2.4-1) ... Setting up libwebp7:amd64 (1.2.2-2+b2) ... Setting up libgif7:amd64 (5.2.1-2.5) ... Setting up libnuma1:amd64 (2.0.15-1) ... Setting up libmd0:amd64 (1.0.4-2) ... Setting up sensible-utils (0.0.17) ... Setting up ocl-icd-libopencl1:amd64 (2.3.1-1) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up at-spi2-common (2.46.0-4) ... Setting up libasound2:amd64 (1.2.8-1) ... Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libbetter-appframework-java (1.9.2-1.1) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.4-3) ... Setting up libthai-data (0.1.29-1) ... Setting up libgtk2.0-common (2.24.33-2) ... Setting up libatk1.0-0:amd64 (2.46.0-4) ... Setting up libkrb5-3:amd64 (1.20.1-1) ... Setting up libtiff5:amd64 (4.4.0-6) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfido2-1:amd64 (1.12.0-2) ... Setting up openssl (3.0.7-1) ... Setting up libbsd0:amd64 (0.11.7-1) ... Setting up libdrm-common (2.4.114-1) ... Setting up libelf1:amd64 (0.188-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-5+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libxcb-xfixes0:amd64 (1.15-1) ... Setting up java-wrappers (0.3) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up libxcb-glx0:amd64 (1.15-1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:amd64 (0.8-6+b1) ... Setting up libnss3:amd64 (2:3.85-1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libxcb-present0:amd64 (1.15-1) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libxcb-sync1:amd64 (1.15-1) ... Setting up shared-mime-info (2.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-1) ... Setting up ucf (3.0043) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up libdrm2:amd64 (2.4.114-1) ... Setting up libllvm15:amd64 (1:15.0.6-2) ... Setting up libx11-6:amd64 (2:1.8.1-2) ... Setting up libharfbuzz0b:amd64 (5.2.0-2+b1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1) ... Setting up ca-certificates-java (20220719) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:EC-ACC.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem done. Setting up libcommons-codec-java (1.15-1) ... Setting up libxcomposite1:amd64 (1:0.4.5-1) ... Setting up libavahi-client3:amd64 (0.8-6+b1) ... Setting up libdrm-amdgpu1:amd64 (2.4.114-1) ... Setting up libxcb-dri3-0:amd64 (1.15-1) ... Setting up gtk-update-icon-cache (3.24.35-2) ... Setting up libx11-xcb1:amd64 (2:1.8.1-2) ... Setting up libibverbs1:amd64 (42.0-1+b1) ... Setting up libdrm-nouveau2:amd64 (2.4.114-1) ... Setting up libxdamage1:amd64 (1:1.1.5-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up ibverbs-providers:amd64 (42.0-1+b1) ... Setting up libcommons-io-java (2.11.0-2) ... Setting up libdrm-radeon1:amd64 (2.4.114-1) ... Setting up fontconfig-config (2.13.1-4.5) ... Setting up openssh-client (1:9.1p1-1) ... Setting up libgl1-mesa-dri:amd64 (22.2.4-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxnvctrl0:amd64 (510.85.02-2) ... Setting up libmpj-java (0.44+dfsg-4) ... Setting up adwaita-icon-theme (43-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libxinerama1:amd64 (2:1.1.4-3) ... Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... Setting up libcups2:amd64 (2.4.2-1+b2) ... Setting up libfontconfig1:amd64 (2.13.1-4.5) ... Setting up librdmacm1:amd64 (42.0-1+b1) ... Setting up fontconfig (2.13.1-4.5) ... Regenerating fonts cache... done. Setting up libucx0:amd64 (1.13.1-1) ... Setting up libglx-mesa0:amd64 (22.2.4-1) ... Setting up libxi6:amd64 (2:1.8-1+b1) ... Setting up libglx0:amd64 (1.5.0-1) ... Setting up libxtst6:amd64 (2:1.2.3-1.1) ... Setting up libxcursor1:amd64 (1:1.2.1-1) ... Setting up libpango-1.0-0:amd64 (1.50.10+ds-1) ... Setting up libhwloc-plugins:amd64 (2.8.0-1) ... Setting up libcairo2:amd64 (1.16.0-6) ... Setting up libgl1:amd64 (1.5.0-1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.5+8-2) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libpangoft2-1.0-0:amd64 (1.50.10+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.10+ds-1) ... Setting up libfabric1:amd64 (1.11.0-3) ... Setting up default-jre-headless (2:1.17-73) ... Setting up libpmix2:amd64 (4.2.2-1) ... Setting up libgtk2.0-0:amd64 (2.24.33-2) ... Setting up libopenmpi3:amd64 (4.1.4-3) ... Setting up openmpi-bin (4.1.4-3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20220408-3) ... Setting up openjdk-17-jre:amd64 (17.0.5+8-2) ... Setting up default-jre (2:1.17-73) ... Setting up alter-sequence-alignment (1.3.4-6) ... Setting up prottest (3.4.2+dfsg-7) ... Processing triggers for libc-bin (2.36-6) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20220719) ... done. 0m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', '-y', 'install', 'prottest'] 0m36.5s INFO: Running scripts post_install 0m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_install_exceptions'] 0m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_install_exceptions'] 0m36.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 0m37.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 0m37.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp6f9n1sza to sid 0m37.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m37.5s INFO: Running scripts pre_distupgrade 0m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_distupgrade_exceptions'] 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_distupgrade_exceptions'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', 'update'] 0m41.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9394 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6947 kB] Fetched 16.5 MB in 3s (5878 kB/s) Reading package lists... 0m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', 'update'] 0m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', '-yf', 'dist-upgrade'] 0m47.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dpkg ibverbs-providers java-wrappers libattr1 libgl1-mesa-dri libglapi-mesa libglx-mesa0 libibverbs1 libjbig0 libllvm15 liblzma5 libpcre2-8-0 librdmacm1 prottest tar zlib1g 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 35.1 MB of archives. After this operation, 767 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.1 [836 kB] Get:2 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.21.11 [2404 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.1-3 [15.4 kB] Get:4 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.2.9-0.0 [189 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.40-3 [260 kB] Get:6 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libibverbs1 amd64 43.0-1 [60.5 kB] Get:8 http://deb.debian.org/debian sid/main amd64 ibverbs-providers amd64 43.0-1 [329 kB] Get:9 http://deb.debian.org/debian sid/main amd64 java-wrappers all 0.4 [8916 B] Get:10 http://deb.debian.org/debian sid/main amd64 libglx-mesa0 amd64 22.3.0-2 [147 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgl1-mesa-dri amd64 22.3.0-2 [7185 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libglapi-mesa amd64 22.3.0-2 [35.5 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libllvm15 amd64 1:15.0.6-3 [23.1 MB] Get:14 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6 [31.6 kB] Get:15 http://deb.debian.org/debian sid/main amd64 librdmacm1 amd64 43.0-1 [68.4 kB] Get:16 http://deb.debian.org/debian sid/main amd64 prottest all 3.4.2+dfsg-8 [349 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.1 MB in 0s (117 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18532 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.13.dfsg-1) over (1:1.2.11.dfsg-4.1) ... Setting up zlib1g:amd64 (1:1.2.13.dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18532 files and directories currently installed.) Preparing to unpack .../0-libibverbs1_43.0-1_amd64.deb ... Unpacking libibverbs1:amd64 (43.0-1) over (42.0-1+b1) ... Preparing to unpack .../1-ibverbs-providers_43.0-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (43.0-1) over (42.0-1+b1) ... Preparing to unpack .../2-java-wrappers_0.4_all.deb ... Unpacking java-wrappers (0.4) over (0.3) ... Preparing to unpack .../3-libglx-mesa0_22.3.0-2_amd64.deb ... Unpacking libglx-mesa0:amd64 (22.3.0-2) over (22.2.4-1) ... Preparing to unpack .../4-libgl1-mesa-dri_22.3.0-2_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (22.3.0-2) over (22.2.4-1) ... Preparing to unpack .../5-libglapi-mesa_22.3.0-2_amd64.deb ... Unpacking libglapi-mesa:amd64 (22.3.0-2) over (22.2.4-1) ... Preparing to unpack .../6-libllvm15_1%3a15.0.6-3_amd64.deb ... Unpacking libllvm15:amd64 (1:15.0.6-3) over (1:15.0.6-2) ... Preparing to unpack .../7-libjbig0_2.1-6_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6) over (2.1-3.1+b2) ... Preparing to unpack .../8-librdmacm1_43.0-1_amd64.deb ... Unpacking librdmacm1:amd64 (43.0-1) over (42.0-1+b1) ... Preparing to unpack .../9-prottest_3.4.2+dfsg-8_all.deb ... Unpacking prottest (3.4.2+dfsg-8) over (3.4.2+dfsg-7) ... Setting up libibverbs1:amd64 (43.0-1) ... Setting up java-wrappers (0.4) ... Setting up ibverbs-providers:amd64 (43.0-1) ... Setting up libjbig0:amd64 (2.1-6) ... Setting up libglapi-mesa:amd64 (22.3.0-2) ... Setting up prottest (3.4.2+dfsg-8) ... Setting up libllvm15:amd64 (1:15.0.6-3) ... Setting up librdmacm1:amd64 (43.0-1) ... Setting up libgl1-mesa-dri:amd64 (22.3.0-2) ... Setting up libglx-mesa0:amd64 (22.3.0-2) ... Processing triggers for libc-bin (2.36-6) ... 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', '-yf', 'dist-upgrade'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m47.6s DUMP: a422e549f607e52d66ae51ceb6f975bd - 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'show', '--no-all-versions', 'prottest'] 0m47.9s DUMP: Package: prottest Version: 3.4.2+dfsg-8 Installed-Size: 497 Maintainer: Debian Med Packaging Team Architecture: all Depends: alter-sequence-alignment, libbetter-appframework-java, libmpj-java, libpal-java, java-wrappers, phyml Description-en: selection of best-fit models of protein evolution PROTTEST (ModelTest's relative) is a program for selecting the model of protein evolution that best fits a given set of sequences (alignment). This java program is based on the Phyml program (for maximum likelihood calculations and optimization of parameters) and uses the PAL library as well. Models included are empirical substitution matrices (such as WAG, LG, mtREV, Dayhoff, DCMut, JTT, VT, Blosum62, CpREV, RtREV, MtMam, MtArt, HIVb, and HIVw) that indicate relative rates of amino acid replacement, and specific improvements (+I:invariable sites, +G: rate heterogeneity among sites, +F: observed amino acid frequencies) to account for the evolutionary constraints impossed by conservation of protein structure and function. ProtTest uses the Akaike Information Criterion (AIC) and other statistics (AICc and BIC) to find which of the candidate models best fits the data at hand. Description-md5: 1454155e5ec803ebc286ba865e4e36cf Homepage: https://github.com/ddarriba/prottest3 Section: science Priority: optional Filename: pool/main/p/prottest/prottest_3.4.2+dfsg-8_all.deb Size: 349408 MD5sum: a06031a7ae99584bd928a58420b40835 SHA256: dfa70adb2a2779431f5836cb3e1278c422667494f5481b03691e8b3bb22a1375 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'show', '--no-all-versions', 'prottest'] 0m47.9s INFO: apt-cache knows about the following packages: prottest 0m47.9s INFO: Running scripts pre_install 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_database-server'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_database-server'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_exceptions'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_exceptions'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_extras'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_extras'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy'] 0m48.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy'] 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy', 'prottest'] 0m48.1s DUMP: prottest: Installed: 3.4.2+dfsg-8 Candidate: 3.4.2+dfsg-8 Version table: *** 3.4.2+dfsg-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy', 'prottest'] 0m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', '-y', 'install', 'prottest'] 0m48.5s DUMP: Reading package lists... Building dependency tree... Reading state information... prottest is already the newest version (3.4.2+dfsg-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', '-y', 'install', 'prottest'] 0m48.5s INFO: Running scripts post_install 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_install_exceptions'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_install_exceptions'] 0m48.5s INFO: Running scripts post_distupgrade 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 0m49.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 0m49.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 0m50.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 0m50.3s INFO: Running scripts pre_install 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_database-server'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_database-server'] 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_exceptions'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_exceptions'] 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_extras'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_extras'] 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture'] 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy'] 0m50.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy'] 0m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy', 'prottest'] 0m50.4s DUMP: prottest: Installed: 3.4.2+dfsg-8 Candidate: 3.4.2+dfsg-8 Version table: *** 3.4.2+dfsg-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-cache', 'policy', 'prottest'] 0m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', '-y', 'install', 'prottest=3.4.2+dfsg-8'] 0m50.8s DUMP: Reading package lists... Building dependency tree... Reading state information... prottest is already the newest version (3.4.2+dfsg-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', '-y', 'install', 'prottest=3.4.2+dfsg-8'] 0m50.8s INFO: Running scripts post_install 0m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_install_exceptions'] 0m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_install_exceptions'] 0m50.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 0m51.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 0m52.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', '-ac', '--ignore-obsolete'] 0m55.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', '-ac', '--ignore-obsolete'] 0m55.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.7s DUMP: 0.15.6 0m55.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.7s INFO: Running adequate version 0.15.6 now. 0m55.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'prottest'] 0m55.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'prottest'] 0m55.8s INFO: Running scripts pre_remove 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m59.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m59.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_exceptions'] 0m60.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/pre_remove_exceptions'] 0m60.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m60.0s DUMP: install ok installed adduser adduser 3.129 install ok installed adwaita-icon-theme adwaita-icon-theme 43-1 install ok installed alter-sequence-alignment alter-sequence-alignment 1.3.4-6 install ok installed apt apt 2.5.4 install ok installed at-spi2-common at-spi2-common 2.46.0-4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed ca-certificates ca-certificates 20211016 install ok installed ca-certificates-java ca-certificates-java 20220719 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed default-jre default-jre 2:1.17-73 install ok installed default-jre-headless default-jre-headless 2:1.17-73 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.11 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed fontconfig fontconfig 2.13.1-4.5 install ok installed fontconfig-config fontconfig-config 2.13.1-4.5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.24.35-2 install ok installed gzip gzip 1.12-1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.17-2 install ok installed hostname hostname 3.23 install ok installed ibverbs-providers:amd64 ibverbs-providers 43.0-1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed java-common java-common 0.73 install ok installed java-wrappers java-wrappers 0.4 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapache-pom-java libapache-pom-java 25-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libasound2:amd64 libasound2 1.2.8-1 install ok installed libasound2-data libasound2-data 1.2.8-1 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.46.0-4 install ok installed libattr1:amd64 libattr1 1:2.5.1-3 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-6+b1 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-6+b1 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-6+b1 install ok installed libbetter-appframework-java libbetter-appframework-java 1.9.2-1.1 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b5 install ok installed libbsd0:amd64 libbsd0 0.11.7-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-6 install ok installed libc6:amd64 libc6 2.36-6 install ok installed libcairo2:amd64 libcairo2 1.16.0-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcbor0.8:amd64 libcbor0.8 0.8.0-2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcommons-cli-java libcommons-cli-java 1.5.0-1 install ok installed libcommons-codec-java libcommons-codec-java 1.15-1 install ok installed libcommons-io-java libcommons-io-java 2.11.0-2 install ok installed libcommons-parent-java libcommons-parent-java 43-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libcups2:amd64 libcups2 2.4.2-1+b2 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-2+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.4-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.114-1 install ok installed libdrm-common libdrm-common 2.4.114-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.114-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.114-1 install ok installed libdrm2:amd64 libdrm2 2.4.114-1 install ok installed libedit2:amd64 libedit2 3.1-20221030-2 install ok installed libelf1:amd64 libelf1 0.188-1 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-5+b1 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-5+b1 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libfabric1:amd64 libfabric1 1.11.0-3 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfido2-1:amd64 libfido2-1 1.12.0-2 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.5 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.10+dfsg-1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.10+dfsg-1 install ok installed libgif7:amd64 libgif7 5.2.1-2.5 install ok installed libgl1:amd64 libgl1 1.5.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 22.3.0-2 install ok installed libglapi-mesa:amd64 libglapi-mesa 22.3.0-2 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.2-1 install ok installed libglvnd0:amd64 libglvnd0 1.5.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 22.3.0-2 install ok installed libglx0:amd64 libglx0 1.5.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-1 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.33-2 install ok installed libgtk2.0-common libgtk2.0-common 2.24.33-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 5.2.0-2+b1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.8.0-1 install ok installed libhwloc15:amd64 libhwloc15 2.8.0-1 install ok installed libibverbs1:amd64 libibverbs1 43.0-1 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libjbig0:amd64 libjbig0 2.1-6 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.2-1+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.13.1-1+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed libllvm15:amd64 libllvm15 1:15.0.6-3 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-11 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.9-0.0 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libmpj-java libmpj-java 0.44+dfsg-4 install ok installed libmunge2 libmunge2 0.5.14-6+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.2+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.2+b1 install ok installed libnspr4:amd64 libnspr4 2:4.35-1 install ok installed libnss3:amd64 libnss3 2:3.85-1 install ok installed libnuma1:amd64 libnuma1 2.0.15-1 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.4-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpal-java libpal-java 1.5.1+dfsg-8 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.50.10+ds-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.50.10+ds-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.50.10+ds-1 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-3 install ok installed libpcsclite1:amd64 libpcsclite1 1.9.9-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1 install ok installed libpmix2:amd64 libpmix2 4.2.2-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.2 install ok installed libpsm2-2 libpsm2-2 11.2.185-2 install ok installed librdmacm1:amd64 librdmacm1 43.0-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsensors-config libsensors-config 1:3.6.0-7.1 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-7.1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.0-1 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libssl3:amd64 libssl3 3.0.7-1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 252.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libthai-data libthai-data 0.1.29-1 install ok installed libthai0:amd64 libthai0 0.1.29-1 install ok installed libtiff5:amd64 libtiff5 4.4.0-6 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libucx0:amd64 libucx0 1.13.1-1 install ok installed libudev1:amd64 libudev1 252.2-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libwebp7:amd64 libwebp7 1.2.2-2+b2 install ok installed libx11-6:amd64 libx11-6 2:1.8.1-2 install ok installed libx11-data libx11-data 2:1.8.1-2 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.1-2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.15-1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.15-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.15-1 install ok installed libxcb-present0:amd64 libxcb-present0 1.15-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.15-1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.5-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.1-1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.5-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2 install ok installed libxi6:amd64 libxi6 2:1.8-1+b1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.1+b2 install ok installed libxnvctrl0:amd64 libxnvctrl0 510.85.02-2 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.2-2+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1.1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.1-1 install ok installed openjdk-17-jre:amd64 openjdk-17-jre 17.0.5+8-2 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.5+8-2 install ok installed openmpi-bin openmpi-bin 4.1.4-3 install ok installed openmpi-common openmpi-common 4.1.4-3 install ok installed openssh-client openssh-client 1:9.1p1-1 install ok installed openssl openssl 3.0.7-1 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed phyml phyml 3:3.3.20220408-3 install ok installed prottest prottest 3.4.2+dfsg-8 install ok installed sed sed 4.8-1 install ok installed sensible-utils sensible-utils 0.0.17 install ok installed shared-mime-info shared-mime-info 2.2-1 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1.1 install ok installed tzdata tzdata 2022f-1 install ok installed ucf ucf 3.0043 install ok installed unzip unzip 6.0-27 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed x11-common x11-common 1:7.7+23 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m60.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m60.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'alter-sequence-alignment', 'at-spi2-common', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'ibverbs-providers:amd64', 'java-common', 'java-wrappers', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbetter-appframework-java', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcbor0.8:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm15:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libmunge2', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpal-java', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libucx0:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'phyml', 'sensible-utils', 'shared-mime-info', 'ucf', 'unzip', 'x11-common', 'prottest'] 1m2.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser adwaita-icon-theme alter-sequence-alignment at-spi2-common ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig fontconfig-config fonts-dejavu-core gtk-update-icon-cache hicolor-icon-theme ibverbs-providers java-common java-wrappers libapache-pom-java libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbetter-appframework-java libbrotli1 libbsd0 libcairo2 libcbor0.8 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdatrie1 libdbus-1-3 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblerc4 libllvm15 liblog4j1.2-java libmpj-java libmunge2 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libopenmpi3 libpal-java libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libpixman-1-0 libpmix2 libpng16-16 libpsm-infinipath1 libpsm2-2 librdmacm1 libsensors-config libsensors5 libsqlite3-0 libssl3 libthai-data libthai0 libtiff5 libucx0 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 ocl-icd-libopencl1 openjdk-17-jre openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl phyml prottest sensible-utils shared-mime-info ucf unzip x11-common 0 upgraded, 0 newly installed, 152 to remove and 0 not upgraded. After this operation, 548 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18530 files and directories currently installed.) Removing prottest (3.4.2+dfsg-8) ... Removing phyml (3:3.3.20220408-3) ... Removing openmpi-bin (4.1.4-3) ... Removing libopenmpi3:amd64 (4.1.4-3) ... Removing libucx0:amd64 (1.13.1-1) ... Removing libfabric1:amd64 (1.11.0-3) ... Removing librdmacm1:amd64 (43.0-1) ... Removing openssh-client (1:9.1p1-1) ... Removing alter-sequence-alignment (1.3.4-6) ... Removing default-jre (2:1.17-73) ... Removing openjdk-17-jre:amd64 (17.0.5+8-2) ... Removing libgtk2.0-0:amd64 (2.24.33-2) ... Removing adwaita-icon-theme (43-1) ... Removing libatk1.0-0:amd64 (2.46.0-4) ... Removing at-spi2-common (2.46.0-4) ... Removing default-jre-headless (2:1.17-73) ... Removing openjdk-17-jre-headless:amd64 (17.0.5+8-2) ... Removing ca-certificates-java (20220719) ... Removing ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.50.10+ds-1) ... Removing libpangoft2-1.0-0:amd64 (1.50.10+ds-1) ... Removing libpango-1.0-0:amd64 (1.50.10+ds-1) ... Removing fontconfig (2.13.1-4.5) ... Removing libcairo2:amd64 (1.16.0-6) ... Removing libfontconfig1:amd64 (2.13.1-4.5) ... Removing fontconfig-config (2.13.1-4.5) ... Removing fonts-dejavu-core (2.37-2) ... Removing gtk-update-icon-cache (3.24.35-2) ... Removing hicolor-icon-theme (0.17-2) ... Removing ibverbs-providers:amd64 (43.0-1) ... Removing java-common (0.73) ... Removing java-wrappers (0.4) ... Removing libmpj-java (0.44+dfsg-4) ... Removing libcommons-codec-java (1.15-1) ... Removing libcommons-io-java (2.11.0-2) ... Removing libcommons-parent-java (43-1) ... Removing libapache-pom-java (25-2) ... Removing libasound2:amd64 (1.2.8-1) ... Removing libasound2-data (1.2.8-1) ... Removing libcups2:amd64 (2.4.2-1+b2) ... Removing libavahi-client3:amd64 (0.8-6+b1) ... Removing libavahi-common3:amd64 (0.8-6+b1) ... Removing libavahi-common-data:amd64 (0.8-6+b1) ... Removing libbetter-appframework-java (1.9.2-1.1) ... Removing libharfbuzz0b:amd64 (5.2.0-2+b1) ... Removing libfreetype6:amd64 (2.12.1+dfsg-3) ... Removing libbrotli1:amd64 (1.0.9-2+b5) ... Removing libgl1:amd64 (1.5.0-1) ... Removing libglx0:amd64 (1.5.0-1) ... Removing libglx-mesa0:amd64 (22.3.0-2) ... Removing libpmix2:amd64 (4.2.2-1) ... Removing libhwloc-plugins:amd64 (2.8.0-1) ... Removing libxnvctrl0:amd64 (510.85.02-2) ... Removing libgl1-mesa-dri:amd64 (22.3.0-2) ... Removing libllvm15:amd64 (1:15.0.6-3) ... Removing libedit2:amd64 (3.1-20221030-2) ... Removing libfido2-1:amd64 (1.12.0-2) ... Removing libcbor0.8:amd64 (0.8.0-2+b1) ... Removing libcommons-cli-java (1.5.0-1) ... Removing libthai0:amd64 (0.1.29-1) ... Removing libdatrie1:amd64 (0.2.13-2+b1) ... Removing libdbus-1-3:amd64 (1.14.4-1) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1) ... Removing libtiff5:amd64 (4.4.0-6) ... Removing libdeflate0:amd64 (1.14-1) ... Removing libdrm-amdgpu1:amd64 (2.4.114-1) ... Removing libdrm-radeon1:amd64 (2.4.114-1) ... Removing libdrm-nouveau2:amd64 (2.4.114-1) ... Removing libdrm2:amd64 (2.4.114-1) ... Removing libdrm-common (2.4.114-1) ... Removing libelf1:amd64 (0.188-1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-5+b1) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-5+b1) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Removing libgif7:amd64 (5.2.1-2.5) ... Removing libglapi-mesa:amd64 (22.3.0-2) ... Removing shared-mime-info (2.2-1) ... Removing libglib2.0-0:amd64 (2.74.2-1) ... Removing libglvnd0:amd64 (1.5.0-1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-1) ... Removing libgtk2.0-common (2.24.33-2) ... Removing libhwloc15:amd64 (2.8.0-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Removing libicu72:amd64 (72.1-3) ... Removing libjbig0:amd64 (2.1-6) ... Removing libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Removing libkrb5-3:amd64 (1.20.1-1) ... Removing libk5crypto3:amd64 (1.20.1-1) ... Removing libkeyutils1:amd64 (1.6.3-1) ... Removing libkrb5support0:amd64 (1.20.1-1) ... Removing liblcms2-2:amd64 (2.13.1-1+b1) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing liblog4j1.2-java (1.2.17-11) ... Removing libmunge2 (0.5.14-6+b1) ... Removing libnss3:amd64 (2:3.85-1) ... Removing libnspr4:amd64 (2:4.35-1) ... Removing libpsm2-2 (11.2.185-2) ... Removing libnuma1:amd64 (2.0.15-1) ... Removing libpal-java (1.5.1+dfsg-8) ... Removing libpciaccess0:amd64 (0.17-2) ... Removing libpcsclite1:amd64 (1.9.9-1) ... Removing libpixman-1-0:amd64 (0.42.2-1) ... Removing libpng16-16:amd64 (1.6.39-2) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libsensors5:amd64 (1:3.6.0-7.1) ... Removing libsensors-config (1:3.6.0-7.1) ... Removing libsqlite3-0:amd64 (3.40.0-1) ... Removing openssl (3.0.7-1) ... Removing libssl3:amd64 (3.0.7-1) ... Removing libthai-data (0.1.29-1) ... Removing libwebp7:amd64 (1.2.2-2+b2) ... Removing libx11-xcb1:amd64 (2:1.8.1-2) ... Removing libxcb-dri2-0:amd64 (1.15-1) ... Removing libxcb-dri3-0:amd64 (1.15-1) ... Removing libxcb-glx0:amd64 (1.15-1) ... Removing libxcb-present0:amd64 (1.15-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libxcb-sync1:amd64 (1.15-1) ... Removing libxcb-xfixes0:amd64 (1.15-1) ... Removing libxcomposite1:amd64 (1:0.4.5-1) ... Removing libxcursor1:amd64 (1:1.2.1-1) ... Removing libxdamage1:amd64 (1:1.1.5-2) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxtst6:amd64 (2:1.2.3-1.1) ... Removing libxfixes3:amd64 (1:6.0.0-2) ... Removing libxi6:amd64 (2:1.8-1+b1) ... Removing libxinerama1:amd64 (2:1.1.4-3) ... Removing libxrandr2:amd64 (2:1.5.2-2+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libz3-4:amd64 (4.8.12-3) ... Removing ocl-icd-libopencl1:amd64 (2.3.1-1) ... Removing openmpi-common (4.1.4-3) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.17) ... Removing unzip (6.0-27) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libibverbs1:amd64 (43.0-1) ... Removing adduser (3.129) ... Removing libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Removing libnl-3-200:amd64 (3.7.0-0.2+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libx11-6:amd64 (2:1.8.1-2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-1) ... Removing libx11-data (2:1.8.1-2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Processing triggers for libc-bin (2.36-6) ... 1m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'alter-sequence-alignment', 'at-spi2-common', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'ibverbs-providers:amd64', 'java-common', 'java-wrappers', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbetter-appframework-java', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcbor0.8:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm15:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libmunge2', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpal-java', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libucx0:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'phyml', 'sensible-utils', 'shared-mime-info', 'ucf', 'unzip', 'x11-common', 'prottest'] 1m2.3s INFO: Running scripts post_remove 1m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_remove_exceptions'] 1m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_remove_exceptions'] 1m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'alter-sequence-alignment', 'at-spi2-common', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'ibverbs-providers:amd64', 'java-common', 'java-wrappers', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbetter-appframework-java', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcbor0.8:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm15:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libmunge2', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpal-java', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libucx0:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'phyml', 'sensible-utils', 'shared-mime-info', 'ucf', 'unzip', 'x11-common'] 1m3.1s DUMP: (Reading database ... 8726 files and directories currently installed.) Purging configuration files for adduser (3.129) ... Purging configuration files for adwaita-icon-theme (43-1) ... dpkg: warning: ignoring request to remove alter-sequence-alignment which isn't installed dpkg: warning: ignoring request to remove at-spi2-common which isn't installed Purging configuration files for ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20220719) ... dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for fontconfig (2.13.1-4.5) ... Purging configuration files for fontconfig-config (2.13.1-4.5) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed Purging configuration files for ibverbs-providers:amd64 (43.0-1) ... Purging configuration files for java-common (0.73) ... dpkg: warning: ignoring request to remove java-wrappers which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbetter-appframework-java which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcbor0.8 which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (22.3.0-2) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.2-1) ... dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-1) ... Purging configuration files for libgtk2.0-0:amd64 (2.24.33-2) ... Purging configuration files for libgtk2.0-common (2.24.33-2) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libllvm15 which isn't installed dpkg: warning: ignoring request to remove liblog4j1.2-java which isn't installed Purging configuration files for libmpj-java (0.44+dfsg-4) ... dpkg: warning: ignoring request to remove libmunge2 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-0.2+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpal-java which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.2) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed Purging configuration files for libsensors-config (1:3.6.0-7.1) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed dpkg: warning: ignoring request to remove openjdk-17-jre which isn't installed Purging configuration files for openjdk-17-jre-headless:amd64 (17.0.5+8-2) ... Purging configuration files for openmpi-bin (4.1.4-3) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:9.1p1-1) ... Purging configuration files for openssl (3.0.7-1) ... dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for shared-mime-info (2.2-1) ... Purging configuration files for ucf (3.0043) ... Purging configuration files for unzip (6.0-27) ... Purging configuration files for x11-common (1:7.7+23) ... 1m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'alter-sequence-alignment', 'at-spi2-common', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'ibverbs-providers:amd64', 'java-common', 'java-wrappers', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbetter-appframework-java', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcbor0.8:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm15:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libmunge2', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpal-java', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libucx0:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'phyml', 'sensible-utils', 'shared-mime-info', 'ucf', 'unzip', 'x11-common'] 1m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg', '--purge', 'prottest'] 1m3.1s DUMP: (Reading database ... 8604 files and directories currently installed.) Purging configuration files for prottest (3.4.2+dfsg-8) ... 1m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg', '--purge', 'prottest'] 1m3.1s INFO: Running scripts post_purge 1m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_purge_exceptions'] 1m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_purge_exceptions'] 1m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg', '--purge', '--pending'] 1m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg', '--purge', '--pending'] 1m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg', '--remove', '--pending'] 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg', '--remove', '--pending'] 1m3.2s INFO: Running scripts post_test 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_test_exceptions'] 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'tmp/scripts/post_test_exceptions'] 1m3.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 1m3.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg-divert', '--list'] 1m3.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'dpkg-divert', '--list'] 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', 'clean'] 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza', 'apt-get', 'clean'] 1m3.9s DEBUG: Recording chroot state 1m4.5s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned 1m5.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/shm'] 1m5.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/shm'] 1m5.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/console'] 1m5.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/console'] 1m5.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/ptmx'] 1m5.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/ptmx'] 1m5.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/pts'] 1m5.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/dev/pts'] 1m5.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/proc'] 1m5.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza/proc'] 1m5.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 1m5.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6f9n1sza'] 1m5.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp6f9n1sza 1m5.4s INFO: PASS: Upgrading between Debian distributions. 1m5.4s INFO: PASS: All tests. 1m5.4s INFO: piuparts run ends. ret=0 End: 2022-12-06 04:35:37 GMT