Start: 2026-09-04 15:48:17 GMT [testing] Package: python3-biom-format Source: python-biom-format Version: 2.1.17-5 Installed-Size: 1037 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: biom-format-tools Depends: python3-h5py, python3 (<< 3.15), python3 (>= 3.13~), python3-click, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-pandas, python3-scipy, python3:any, libc6 (>= 2.4) Suggests: python-biom-format-doc Description: Biological Observation Matrix (BIOM) format (Python 3) Homepage: https://biom-format.org/ Description-md5: a8e1165fb97cc05bc8c23295225341cd Section: python Priority: optional Filename: pool/main/p/python-biom-format/python3-biom-format_2.1.17-5_amd64.deb Size: 208968 MD5sum: d459b886cbfe383c6899eee976471673 SHA256: fbe94da9f8457d97d4c2070ede19524988981216d99c2e895bed37c299a4164c [sid] Package: python3-biom-format Source: python-biom-format (2.1.17-5) Version: 2.1.17-5+b1 Installed-Size: 786 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: biom-format-tools Depends: python3-h5py, python3 (<< 3.15), python3 (>= 3.14~), python3-click, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-pandas, python3-scipy, python3:any, libc6 (>= 2.4) Suggests: python-biom-format-doc Description: Biological Observation Matrix (BIOM) format (Python 3) Homepage: https://biom-format.org/ Description-md5: a8e1165fb97cc05bc8c23295225341cd Section: python Priority: optional Filename: pool/main/p/python-biom-format/python3-biom-format_2.1.17-5+b1_amd64.deb Size: 182096 MD5sum: 91e0c1a50b52f41cf2b15472eb667dfe SHA256: d4fc0504577efaff575270ee3f8b162aacef3534fa4bc454352e52421b4b6277 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-biom-format=2.1.17-5+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291514~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-biom-format=2.1.17-5+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpf5u8hj0m 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpf5u8hj0m 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpf5u8hj0m/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', 'update'] 0m2.9s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9920 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6569 kB] Fetched 16.6 MB in 2s (10.5 MB/s) Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils debianutils libblkid1 libc-bin libc-gconv-modules-extra libc6 libmount1 libsmartcols1 libuuid1 login mount util-linux 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5908 kB of archives. After this operation, 175 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 debianutils amd64 5.24 [93.3 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libc-gconv-modules-extra amd64 2.43-4 [1101 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libc6 amd64 2.43-4 [1866 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.42.2-4 [34.4 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.42.2-4 [185 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.42.2-4 [230 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.42.2-4 [153 kB] Get:8 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.42.2-4 [1244 kB] Get:9 http://deb.debian.org/debian forky/main amd64 mount amd64 2.42.2-4 [169 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libc-bin amd64 2.43-4 [620 kB] Get:11 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.42.2-4 [121 kB] Get:12 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.42.2-4 [92.9 kB] Preconfiguring packages ... Fetched 5908 kB in 0s (37.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../debianutils_5.24_amd64.deb ... Unpacking debianutils (5.24) over (5.23.2) ... Setting up debianutils (5.24) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libc-gconv-modules-extra_2.43-4_amd64.deb ... Unpacking libc-gconv-modules-extra:amd64 (2.43-4) over (2.43-3) ... Setting up libc-gconv-modules-extra:amd64 (2.43-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libc6_2.43-4_amd64.deb ... Unpacking libc6:amd64 (2.43-4) over (2.43-3) ... Setting up libc6:amd64 (2.43-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libuuid1_2.42.2-4_amd64.deb ... Unpacking libuuid1:amd64 (2.42.2-4) over (2.42.2-2) ... Setting up libuuid1:amd64 (2.42.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libblkid1_2.42.2-4_amd64.deb ... Unpacking libblkid1:amd64 (2.42.2-4) over (2.42.2-2) ... Setting up libblkid1:amd64 (2.42.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libmount1_2.42.2-4_amd64.deb ... Unpacking libmount1:amd64 (2.42.2-4) over (2.42.2-2) ... Setting up libmount1:amd64 (2.42.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.42.2-4_amd64.deb ... Unpacking libsmartcols1:amd64 (2.42.2-4) over (2.42.2-2) ... Setting up libsmartcols1:amd64 (2.42.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../util-linux_2.42.2-4_amd64.deb ... Unpacking util-linux (2.42.2-4) over (2.42.2-2) ... Setting up util-linux (2.42.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../mount_2.42.2-4_amd64.deb ... Unpacking mount (2.42.2-4) over (2.42.2-2) ... Preparing to unpack .../libc-bin_2.43-4_amd64.deb ... Unpacking libc-bin (2.43-4) over (2.43-3) ... Setting up libc-bin (2.43-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.42.2-4_amd64.deb ... Unpacking login (1:4.16.0-2+really2.42.2-4) over (1:4.16.0-2+really2.42.2-2) ... Preparing to unpack .../bsdutils_1%3a2.42.2-4_amd64.deb ... Unpacking bsdutils (1:2.42.2-4) over (1:2.42.2-2) ... Setting up bsdutils (1:2.42.2-4) ... Setting up mount (2.42.2-4) ... Setting up login (1:4.16.0-2+really2.42.2-4) ... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.8s DUMP: 616ecdb262397642edfd95fbd6e8acf8 - 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.8s INFO: Running scripts post_setup 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_dummy_users'] 0m6.7s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_dummy_users'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_forbid_home'] 0m6.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_forbid_home'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_minimize'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_minimize'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_zz_backports'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_setup_zz_backports'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.8s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3+b1 install ok installed bsdutils bsdutils 1:2.42.2-4 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.42.2-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-4 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-4 install ok installed libc6:amd64 libc6 2.43-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-4 install ok installed libssl3t64:amd64 libssl3t64 3.6.3-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.2-4 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.2-4 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.3-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed util-linux util-linux 2.42.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m7.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m7.2s INFO: Running scripts is_testable 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s INFO: Running scripts pre_test 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_test_root_password'] 0m7.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_test_root_password'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'show', '--no-all-versions', 'python3-biom-format'] 0m7.6s DUMP: Package: python3-biom-format Source: python-biom-format Version: 2.1.17-5 Installed-Size: 1037 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: biom-format-tools Depends: python3-h5py, python3 (<< 3.15), python3 (>= 3.13~), python3-click, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-pandas, python3-scipy, python3:any, libc6 (>= 2.4) Suggests: python-biom-format-doc Description-en: Biological Observation Matrix (BIOM) format (Python 3) The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project. . The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome. . This package provides the BIOM format library for the Python 3 interpreter. Description-md5: a8e1165fb97cc05bc8c23295225341cd Homepage: https://biom-format.org/ Section: python Priority: optional Filename: pool/main/p/python-biom-format/python3-biom-format_2.1.17-5_amd64.deb Size: 208968 MD5sum: d459b886cbfe383c6899eee976471673 SHA256: fbe94da9f8457d97d4c2070ede19524988981216d99c2e895bed37c299a4164c 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'show', '--no-all-versions', 'python3-biom-format'] 0m7.6s INFO: apt-cache knows about the following packages: python3-biom-format 0m7.6s INFO: Running scripts pre_install 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_database-server'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_database-server'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_exceptions'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_exceptions'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_extras'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_extras'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy'] 0m7.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy', 'python3-biom-format'] 0m7.7s DUMP: python3-biom-format: Installed: (none) Candidate: 2.1.17-5 Version table: 2.1.17-5 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy', 'python3-biom-format'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', '-y', 'install', 'python3-biom-format'] 0m30.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: libblas3 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgfortran5 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libunistring5 media-types netbase python3 python3-click python3-dateutil python3-decorator python3-h5py python3-h5py-serial python3-minimal python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pytz python3-scipy python3.14 python3.14-minimal readline-common Suggested packages: krb5-doc krb5-user python3-doc python3-tk python3-venv python-biom-format-doc python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python-scipy-doc python3.14-venv python3.14-doc binutils binfmt-support readline-doc Recommended packages: ca-certificates krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba g++ | c++-compiler python3-pil python3-pooch python3-yaml The following NEW packages will be installed: libblas3 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgfortran5 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libunistring5 media-types netbase python3 python3-biom-format python3-click python3-dateutil python3-decorator python3-h5py python3-h5py-serial python3-minimal python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pytz python3-scipy python3.14 python3.14-minimal readline-common 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 54.4 MB of archives. After this operation, 287 MB of additional disk space will be used. 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http://deb.debian.org/debian forky/main amd64 libpython3.14-stdlib amd64 3.14.7-1 [2356 kB] Get:13 http://deb.debian.org/debian forky/main amd64 python3.14 amd64 3.14.7-1 [861 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:15 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:16 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-4 [137 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:18 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 16.2.0-1 [878 kB] Get:19 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:20 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.4.6+ds-4 [7509 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.4-1+b1 [19.5 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:26 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:27 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:28 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:29 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:32 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:33 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:34 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:35 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:36 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:39 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.21.0-2 [422 kB] Get:40 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:41 http://deb.debian.org/debian forky/main amd64 libhdf5-310 amd64 1.14.6+repack-2+b1 [1357 kB] Get:42 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-310 amd64 1.14.6+repack-2+b1 [63.3 kB] Get:43 http://deb.debian.org/debian forky/main amd64 liblzf1 amd64 3.6-4+b4 [10.1 kB] Get:44 http://deb.debian.org/debian forky/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:45 http://deb.debian.org/debian forky/main amd64 python3-h5py-serial amd64 3.16.0-3 [1521 kB] Get:46 http://deb.debian.org/debian forky/main amd64 python3-h5py all 3.16.0-3 [14.8 kB] Get:47 http://deb.debian.org/debian forky/main amd64 python3-click all 8.3.3-2 [107 kB] Get:48 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:49 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2025.2-7 [31.1 kB] Get:50 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-3+b1 [6581 kB] Get:51 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.3.3+dfsg-3 [2935 kB] Get:52 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.3.1-1 [33.3 kB] Get:53 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.17.1-5 [18.6 MB] Get:54 http://deb.debian.org/debian forky/main amd64 python3-biom-format amd64 2.1.17-5 [209 kB] Fetched 54.4 MB in 2s (26.6 MB/s) Selecting previously unselected package libexpat1:amd64. 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Unpacking libblas3:amd64 (3.12.1-8) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../03-libgfortran5_16.2.0-1_amd64.deb ... Unpacking libgfortran5:amd64 (16.2.0-1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../04-liblapack3_3.12.1-8_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-8) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../05-python3-numpy_1%3a2.4.6+ds-4_amd64.deb ... Unpacking python3-numpy (1:2.4.6+ds-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../06-libbrotli1_1.2.0-4+b1_amd64.deb ... Unpacking libbrotli1:amd64 (1.2.0-4+b1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../07-libcom-err2_1.47.4-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.4-1+b1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../08-libnghttp3-9_1.17.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.17.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../09-libngtcp2-16_1.24.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.24.0-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../10-libkrb5support0_1.22.1-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.22.1-3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../11-libk5crypto3_1.22.1-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.22.1-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../12-libkeyutils1_1.6.3-6+b2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6+b2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../13-libkrb5-3_1.22.1-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.22.1-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. 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Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../20-libnghttp2-14_1.70.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.70.0-1) ... Selecting previously unselected package libngtcp2-crypto-ossl0:amd64. Preparing to unpack .../21-libngtcp2-crypto-ossl0_1.24.0-1_amd64.deb ... Unpacking libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../22-libpsl5t64_0.23.3-1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.23.3-1) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../23-libssh2-1t64_1.11.1-6_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-6) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../24-libcurl4t64_8.21.0-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.21.0-2) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../25-libsz2_1.1.7-1_amd64.deb ... Unpacking libsz2:amd64 (1.1.7-1) ... Selecting previously unselected package libhdf5-310:amd64. Preparing to unpack .../26-libhdf5-310_1.14.6+repack-2+b1_amd64.deb ... Unpacking libhdf5-310:amd64 (1.14.6+repack-2+b1) ... Selecting previously unselected package libhdf5-hl-310:amd64. Preparing to unpack .../27-libhdf5-hl-310_1.14.6+repack-2+b1_amd64.deb ... Unpacking libhdf5-hl-310:amd64 (1.14.6+repack-2+b1) ... Selecting previously unselected package liblzf1:amd64. Preparing to unpack .../28-liblzf1_3.6-4+b4_amd64.deb ... Unpacking liblzf1:amd64 (3.6-4+b4) ... Selecting previously unselected package libqhull-r8.0:amd64. Preparing to unpack .../29-libqhull-r8.0_2020.2-9_amd64.deb ... Unpacking libqhull-r8.0:amd64 (2020.2-9) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../30-python3-h5py-serial_3.16.0-3_amd64.deb ... Unpacking python3-h5py-serial (3.16.0-3) ... Selecting previously unselected package python3-h5py. 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Preparing to unpack .../37-python3-decorator_5.3.1-1_all.deb ... Unpacking python3-decorator (5.3.1-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../38-python3-scipy_1.17.1-5_amd64.deb ... Unpacking python3-scipy (1.17.1-5) ... Selecting previously unselected package python3-biom-format. Preparing to unpack .../39-python3-biom-format_2.1.17-5_amd64.deb ... Unpacking python3-biom-format (2.1.17-5) ... Setting up media-types (14.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up libbrotli1:amd64 (1.2.0-4+b1) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up libqhull-r8.0:amd64 (2020.2-9) ... Setting up libcom-err2:amd64 (1.47.4-1+b1) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-4+b4) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up python3-numpy-dev:amd64 (1:2.4.6+ds-4) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Setting up libgfortran5:amd64 (16.2.0-1) ... Setting up libnghttp3-9:amd64 (1.17.0-1) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up netbase (6.6) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up readline-common (8.3-4) ... Setting up libldap2:amd64 (2.6.14+dfsg-2) ... Setting up libsz2:amd64 (1.1.7-1) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libpython3.14-stdlib:amd64 (3.14.7-1) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up python3.14 (3.14.7-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up libcurl4t64:amd64 (8.21.0-2) ... Setting up python3 (3.14.7-3) ... Setting up python3-click (8.3.3-2) ... Setting up python3-decorator (5.3.1-1) ... Setting up python3-numpy (1:2.4.6+ds-4) ... Setting up libhdf5-310:amd64 (1.14.6+repack-2+b1) ... Setting up python3-dateutil (2.9.0-5) ... Setting up libhdf5-hl-310:amd64 (1.14.6+repack-2+b1) ... Setting up python3-scipy (1.17.1-5) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-3+b1) ... Setting up python3-h5py-serial (3.16.0-3) ... Setting up python3-pytz (2025.2-7) ... Setting up python3-pandas (2.3.3+dfsg-3) ... Setting up python3-h5py (3.16.0-3) ... Setting up python3-biom-format (2.1.17-5) ... Processing triggers for libc-bin (2.43-4) ... 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', '-y', 'install', 'python3-biom-format'] 0m30.4s INFO: Running scripts post_install 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_install_exceptions'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_install_exceptions'] 0m30.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m31.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m31.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpf5u8hj0m to sid 0m31.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m31.4s INFO: Running scripts pre_distupgrade 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_distupgrade_exceptions'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_distupgrade_exceptions'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', 'update'] 0m35.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7720 kB] Fetched 18.7 MB in 3s (6685 kB/s) Reading package lists... 0m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', 'update'] 0m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', '-yf', 'dist-upgrade'] 0m39.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libbrotli1 libcom-err2 libcurl4t64 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libpsl5t64 libsasl2-2 libsasl2-modules-db libssh2-1t64 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhdf5-320 libhdf5-hl-320 The following packages will be upgraded: bsdutils gcc-16-base libblkid1 libcap-ng0 libcurl4t64 libgcc-s1 libgfortran5 libmount1 libpcre2-8-0 libseccomp2 libsemanage2 libsmartcols1 libssl3t64 libstdc++6 libsystemd0 libudev1 libuuid1 login mount openssl-provider-legacy python3-biom-format python3-h5py python3-h5py-serial python3-pytz sqv util-linux 26 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 12.8 MB of archives. After this operation, 3769 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.42.3-1 [34.4 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.42.3-1 [185 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.42.3-1 [230 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.42.3-1 [152 kB] Get:5 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.42.3-1 [1246 kB] Get:6 http://deb.debian.org/debian sid/main amd64 mount amd64 2.42.3-1 [169 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 262~rc1-2 [511 kB] Get:8 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.42.3-1 [121 kB] Get:9 http://deb.debian.org/debian sid/main amd64 gcc-16-base amd64 16.2.0-2 [38.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 16.2.0-2 [823 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.2.0-2 [878 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 16.2.0-2 [74.1 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.9.5-2 [18.6 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.48-2 [312 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.6.1-1+b1 [51.7 kB] Get:16 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.6.4-1 [326 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.6.4-1 [2614 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 262~rc1-2 [148 kB] Get:19 http://deb.debian.org/debian sid/main amd64 sqv amd64 1.5.0-1 [704 kB] Get:20 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.42.3-1 [92.8 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.22.0-1 [462 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libhdf5-320 amd64 2.2.0+repack-4 [2178 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-320 amd64 2.2.0+repack-4 [81.9 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.11-1+b1 [97.0 kB] Get:25 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.16.0-6 [15.0 kB] Get:26 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.16.0-6 [1057 kB] Get:27 http://deb.debian.org/debian sid/main amd64 python3-biom-format amd64 2.1.17-5+b1 [182 kB] Get:28 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2026.3.post1-1 [34.3 kB] Fetched 12.8 MB in 0s (26.0 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10804 files and directories currently installed.) Preparing to unpack .../util-linux_2.42.3-1_amd64.deb ... Unpacking util-linux (2.42.3-1) over (2.42.2-4) ... Setting up util-linux (2.42.3-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10805 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.42.3-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.42.3-1) over (1:4.16.0-2+really2.42.2-4) ... Preparing to unpack .../gcc-16-base_16.2.0-2_amd64.deb ... Unpacking gcc-16-base:amd64 (16.2.0-2) over (16.2.0-1) ... Setting up gcc-16-base:amd64 (16.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10805 files and directories currently installed.) Preparing to unpack .../libstdc++6_16.2.0-2_amd64.deb ... Unpacking libstdc++6:amd64 (16.2.0-2) over (16.2.0-1) ... Setting up libstdc++6:amd64 (16.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10805 files and directories currently installed.) Preparing to unpack .../libgfortran5_16.2.0-2_amd64.deb ... Unpacking libgfortran5:amd64 (16.2.0-2) over (16.2.0-1) ... Preparing to unpack .../libgcc-s1_16.2.0-2_amd64.deb ... Unpacking libgcc-s1:amd64 (16.2.0-2) over (16.2.0-1) ... Setting up libgcc-s1:amd64 (16.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10805 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.9.5-2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.9.5-2) over (0.9.3-1+b1) ... Setting up libcap-ng0:amd64 (0.9.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10804 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.48-2_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.48-2) over (10.46-1+b2) ... Setting up libpcre2-8-0:amd64 (10.48-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10803 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.6.1-1+b1_amd64.deb ... Unpacking libseccomp2:amd64 (2.6.1-1+b1) over (2.6.1-1) ... Setting up libseccomp2:amd64 (2.6.1-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10804 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.6.4-1_amd64.deb ... Unpacking openssl-provider-legacy (3.6.4-1) over (3.6.3-1) ... Setting up openssl-provider-legacy (3.6.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10804 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.6.4-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.6.4-1) over (3.6.3-1) ... Setting up libssl3t64:amd64 (3.6.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10804 files and directories currently installed.) Preparing to unpack .../libudev1_262~rc1-2_amd64.deb ... Unpacking libudev1:amd64 (262~rc1-2) over (261.2-1) ... Setting up libudev1:amd64 (262~rc1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10804 files and directories currently installed.) Preparing to unpack .../archives/sqv_1.5.0-1_amd64.deb ... Unpacking sqv (1.5.0-1) over (1.4.0-1) ... Setting up sqv (1.5.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10804 files and directories currently installed.) Preparing to unpack .../0-bsdutils_1%3a2.42.3-1_amd64.deb ... Unpacking bsdutils (1:2.42.3-1) over (1:2.42.2-4) ... Preparing to unpack .../1-libcurl4t64_8.22.0-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.22.0-1) over (8.21.0-2) ... Selecting previously unselected package libhdf5-320:amd64. Preparing to unpack .../2-libhdf5-320_2.2.0+repack-4_amd64.deb ... Unpacking libhdf5-320:amd64 (2.2.0+repack-4) ... Selecting previously unselected package libhdf5-hl-320:amd64. Preparing to unpack .../3-libhdf5-hl-320_2.2.0+repack-4_amd64.deb ... Unpacking libhdf5-hl-320:amd64 (2.2.0+repack-4) ... Preparing to unpack .../4-libsemanage2_3.11-1+b1_amd64.deb ... Unpacking libsemanage2:amd64 (3.11-1+b1) over (3.11-1) ... Preparing to unpack .../5-python3-h5py_3.16.0-6_all.deb ... Unpacking python3-h5py (3.16.0-6) over (3.16.0-3) ... Preparing to unpack .../6-python3-h5py-serial_3.16.0-6_amd64.deb ... Unpacking python3-h5py-serial (3.16.0-6) over (3.16.0-3) ... Preparing to unpack .../7-python3-biom-format_2.1.17-5+b1_amd64.deb ... Unpacking python3-biom-format (2.1.17-5+b1) over (2.1.17-5) ... Preparing to unpack .../8-python3-pytz_2026.3.post1-1_all.deb ... Unpacking python3-pytz (2026.3.post1-1) over (2025.2-7) ... Setting up bsdutils (1:2.42.3-1) ... Setting up libcurl4t64:amd64 (8.22.0-1) ... Setting up python3-pytz (2026.3.post1-1) ... Setting up libgfortran5:amd64 (16.2.0-2) ... Setting up mount (2.42.3-1) ... Setting up libsemanage2:amd64 (3.11-1+b1) ... Setting up libhdf5-320:amd64 (2.2.0+repack-4) ... Setting up login (1:4.16.0-2+really2.42.3-1) ... Setting up libhdf5-hl-320:amd64 (2.2.0+repack-4) ... Setting up python3-h5py-serial (3.16.0-6) ... Setting up python3-h5py (3.16.0-6) ... Setting up python3-biom-format (2.1.17-5+b1) ... Processing triggers for libselinux1:amd64 (3.11-2) ... Processing triggers for libc-bin (2.43-4) ... 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', '-yf', 'dist-upgrade'] 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m40.4s DUMP: 5e2b0fa25fb11b781e6993403e7268b4 - 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'show', '--no-all-versions', 'python3-biom-format'] 0m40.6s DUMP: Package: python3-biom-format Source: python-biom-format (2.1.17-5) Version: 2.1.17-5+b1 Installed-Size: 786 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: biom-format-tools Depends: python3-h5py, python3 (<< 3.15), python3 (>= 3.14~), python3-click, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-pandas, python3-scipy, python3:any, libc6 (>= 2.4) Suggests: python-biom-format-doc Description-en: Biological Observation Matrix (BIOM) format (Python 3) The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project. . The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome. . This package provides the BIOM format library for the Python 3 interpreter. Description-md5: a8e1165fb97cc05bc8c23295225341cd Homepage: https://biom-format.org/ Section: python Priority: optional Filename: pool/main/p/python-biom-format/python3-biom-format_2.1.17-5+b1_amd64.deb Size: 182096 MD5sum: 91e0c1a50b52f41cf2b15472eb667dfe SHA256: d4fc0504577efaff575270ee3f8b162aacef3534fa4bc454352e52421b4b6277 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'show', '--no-all-versions', 'python3-biom-format'] 0m40.6s INFO: apt-cache knows about the following packages: python3-biom-format 0m40.6s INFO: Running scripts pre_install 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_database-server'] 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_database-server'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_exceptions'] 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_exceptions'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_extras'] 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_extras'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture'] 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy'] 0m40.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy', 'python3-biom-format'] 0m40.7s DUMP: python3-biom-format: Installed: 2.1.17-5+b1 Candidate: 2.1.17-5+b1 Version table: *** 2.1.17-5+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy', 'python3-biom-format'] 0m40.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', '-y', 'install', 'python3-biom-format'] 0m41.2s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-biom-format is already the newest version (2.1.17-5+b1). Solving dependencies... The following packages were automatically installed and are no longer required: libbrotli1 libcom-err2 libcurl4t64 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libpsl5t64 libsasl2-2 libsasl2-modules-db libssh2-1t64 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', '-y', 'install', 'python3-biom-format'] 0m41.2s INFO: Running scripts post_install 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_install_exceptions'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_install_exceptions'] 0m41.2s INFO: Running scripts post_distupgrade 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_distupgrade_exceptions'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_distupgrade_exceptions'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_distupgrade_zz_backports'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_distupgrade_zz_backports'] 0m41.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m42.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m42.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m43.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m43.2s INFO: Running scripts pre_install 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_database-server'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_database-server'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_exceptions'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_exceptions'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_extras'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_extras'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy'] 0m43.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy', 'python3-biom-format'] 0m43.3s DUMP: python3-biom-format: Installed: 2.1.17-5+b1 Candidate: 2.1.17-5+b1 Version table: *** 2.1.17-5+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-cache', 'policy', 'python3-biom-format'] 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', '-y', 'install', 'python3-biom-format=2.1.17-5+b1'] 0m43.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-biom-format is already the newest version (2.1.17-5+b1). Solving dependencies... The following packages were automatically installed and are no longer required: libbrotli1 libcom-err2 libcurl4t64 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libpsl5t64 libsasl2-2 libsasl2-modules-db libssh2-1t64 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', '-y', 'install', 'python3-biom-format=2.1.17-5+b1'] 0m43.8s INFO: Running scripts post_install 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_install_exceptions'] 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_install_exceptions'] 0m43.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m44.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m45.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', '-ac', '--ignore-obsolete'] 0m47.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', '-ac', '--ignore-obsolete'] 0m47.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m47.3s DUMP: 0.17.5+b5 0m47.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m47.3s INFO: Running adequate version 0.17.5+b5 now. 0m47.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'python3-biom-format'] 0m47.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'python3-biom-format'] 0m47.4s INFO: Running scripts pre_remove 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_exceptions'] 0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/pre_remove_exceptions'] 0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m48.9s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3+b1 install ok installed bsdutils bsdutils 1:2.42.3-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-2 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.3-1 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-4+b1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-4 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-4 install ok installed libc6:amd64 libc6 2.43-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.5-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.22.0-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libexpat1:amd64 libexpat1 2.8.4-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-2 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.6+repack-2+b1 install ok installed libhdf5-320:amd64 libhdf5-320 2.2.0+repack-4 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.6+repack-2+b1 install ok installed libhdf5-hl-320:amd64 libhdf5-hl-320 2.2.0+repack-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed libldap2:amd64 libldap2 2.6.14+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzf1:amd64 liblzf1 3.6-4+b4 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.3-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-2 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.3-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.7-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.7-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-9 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.3-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-6 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 262~rc1-2 install ok installed libsz2:amd64 libsz2 1.1.7-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262~rc1-2 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.3-1 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.3-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed python3 python3 3.14.7-3 install ok installed python3-biom-format python3-biom-format 2.1.17-5+b1 install ok installed python3-click python3-click 8.3.3-2 install ok installed python3-dateutil python3-dateutil 2.9.0-5 install ok installed python3-decorator python3-decorator 5.3.1-1 install ok installed python3-h5py python3-h5py 3.16.0-6 install ok installed python3-h5py-serial python3-h5py-serial 3.16.0-6 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3-numpy python3-numpy 1:2.4.6+ds-4 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.4.6+ds-4 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-3 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-3+b1 install ok installed python3-pytz python3-pytz 2026.3.post1-1 install ok installed python3-scipy python3-scipy 1.17.1-5 install ok installed python3.14 python3.14 3.14.7-1 install ok installed python3.14-minimal python3.14-minimal 3.14.7-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed util-linux util-linux 2.42.3-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', 'remove', '--allow-remove-essential', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-320:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pytz', 'python3-scipy', 'python3.14', 'python3.14-minimal', 'readline-common', 'python3-biom-format'] 0m52.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: libblas3 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgfortran5 libgssapi-krb5-2 libhdf5-310 libhdf5-320 libhdf5-hl-310 libhdf5-hl-320 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libunistring5 media-types netbase python3 python3-biom-format python3-click python3-dateutil python3-decorator python3-h5py python3-h5py-serial python3-minimal python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pytz python3-scipy python3.14 python3.14-minimal readline-common 0 upgraded, 0 newly installed, 56 to remove and 0 not upgraded. After this operation, 290 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10793 files and directories currently installed.) Removing python3-biom-format (2.1.17-5+b1) ... Removing python3-scipy (1.17.1-5) ... Removing python3-pandas (2.3.3+dfsg-3) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-3+b1) ... Removing python3-h5py (3.16.0-6) ... Removing python3-h5py-serial (3.16.0-6) ... Removing python3-numpy (1:2.4.6+ds-4) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libhdf5-hl-310:amd64 (1.14.6+repack-2+b1) ... Removing libhdf5-310:amd64 (1.14.6+repack-2+b1) ... Removing libcurl4t64:amd64 (8.22.0-1) ... Removing libbrotli1:amd64 (1.2.0-4+b1) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1+b1) ... Removing python3-pytz (2026.3.post1-1) ... Removing python3-decorator (5.3.1-1) ... Removing libgfortran5:amd64 (16.2.0-2) ... Removing libhdf5-hl-320:amd64 (2.2.0+repack-4) ... Removing libhdf5-320:amd64 (2.2.0+repack-4) ... Removing libpsl5t64:amd64 (0.23.3-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing libldap2:amd64 (2.6.14+dfsg-2) ... Removing liblzf1:amd64 (3.6-4+b4) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libqhull-r8.0:amd64 (2020.2-9) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libssh2-1t64:amd64 (1.11.1-6) ... Removing libsz2:amd64 (1.1.7-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing python3-click (8.3.3-2) ... Removing python3-dateutil (2.9.0-5) ... Removing python3-numpy-dev:amd64 (1:2.4.6+ds-4) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.7-1) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.7-1) ... Removing libexpat1:amd64 (2.8.4-1) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libpython3.14-minimal:amd64 (3.14.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.43-4) ... 0m52.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', 'remove', '--allow-remove-essential', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-320:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pytz', 'python3-scipy', 'python3.14', 'python3.14-minimal', 'readline-common', 'python3-biom-format'] 0m52.0s INFO: Running scripts post_remove 0m52.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_remove_exceptions'] 0m52.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_remove_exceptions'] 0m52.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg', '--purge', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-320:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pytz', 'python3-scipy', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m52.1s DUMP: dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed (Reading database ... 4988 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... dpkg: warning: ignoring request to remove libhdf5-310 which is not installed dpkg: warning: ignoring request to remove libhdf5-320 which is not installed dpkg: warning: ignoring request to remove libhdf5-hl-310 which is not installed dpkg: warning: ignoring request to remove libhdf5-hl-320 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblzf1 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.7-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove libqhull-r8.0 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libsz2 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.6) ... Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-click which is not installed dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-decorator which is not installed dpkg: warning: ignoring request to remove python3-h5py which is not installed dpkg: warning: ignoring request to remove python3-h5py-serial which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed Purging configuration files for python3-numpy (1:2.4.6+ds-4) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-pandas which is not installed dpkg: warning: ignoring request to remove python3-pandas-lib which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3-scipy which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.7-1) ... Purging configuration files for readline-common (8.3-4) ... 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg', '--purge', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-320:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pytz', 'python3-scipy', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg', '--purge', 'python3-biom-format'] 0m52.1s DUMP: dpkg: warning: ignoring request to remove python3-biom-format which is not installed 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg', '--purge', 'python3-biom-format'] 0m52.1s INFO: Running scripts post_purge 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_purge_exceptions'] 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_purge_exceptions'] 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg', '--purge', '--pending'] 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg', '--purge', '--pending'] 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg', '--remove', '--pending'] 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg', '--remove', '--pending'] 0m52.1s INFO: Running scripts post_test 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_test_exceptions'] 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'tmp/scripts/post_test_exceptions'] 0m52.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m52.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg-divert', '--list'] 0m52.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'dpkg-divert', '--list'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', 'clean'] 0m52.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m', 'apt-get', 'clean'] 0m52.6s DEBUG: Recording chroot state 0m53.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/shm'] 0m53.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/shm'] 0m53.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/console'] 0m53.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/console'] 0m53.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/ptmx'] 0m53.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/ptmx'] 0m53.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/pts'] 0m53.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/dev/pts'] 0m53.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/proc'] 0m53.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m/proc'] 0m53.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m54.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpf5u8hj0m'] 0m54.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpf5u8hj0m 0m54.1s INFO: PASS: Upgrading between Debian distributions. 0m54.1s INFO: PASS: All tests. 0m54.1s INFO: piuparts run ends. ret=0 End: 2026-09-04 15:49:11 GMT