Start: 2024-04-28 09:48:18 GMT [testing] Package: python3-cobra Source: python-cobra Version: 0.26.2-1 Installed-Size: 1873 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-appdirs (>= 1.4), python3-appdirs (<< 2), python3-depinfo, python3-diskcache, python3-future, python3-httpx, python3-importlib-resources, python3-numpy, python3-optlang, python3-pandas, python3-pydantic, python3-rich, python3-ruamel.yaml, python3-swiglpk (>= 4.65.1), python3:any, python-cobra-data (= 0.26.2-1), python3-simplejson, python3-tabulate, python3-sbml5 Suggests: python3-matplotlib, qsopt-ex Description: constraint-based modeling of biological networks with Python 3 Homepage: https://opencobra.github.io/cobrapy/ Description-md5: 0052f98776eccb61924a15b5d6618e25 Section: python Priority: optional Filename: pool/main/p/python-cobra/python3-cobra_0.26.2-1_amd64.deb Size: 1118596 MD5sum: 851a6826df7628af5b75ad6c9ffbc94d SHA256: 8ba34bdd35295cc18c96886f74d206bd456fede1919438d3efdff049703d1b68 [sid] Package: python3-cobra Source: python-cobra Version: 0.29.0-2 Installed-Size: 1875 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-appdirs (>= 1.4), python3-appdirs (<< 2), python3-depinfo, python3-diskcache, python3-httpx, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-pandas, python3-pydantic, python3-rich, python3-ruamel.yaml, python3-swiglpk (>= 5.0.8-1~), python3:any, python-cobra-data (= 0.29.0-2), python3-simplejson, python3-tabulate, python3-sbml5 Suggests: python3-matplotlib, qsopt-ex Description: constraint-based modeling of biological networks with Python 3 Homepage: https://opencobra.github.io/cobrapy/ Description-md5: 0052f98776eccb61924a15b5d6618e25 Section: python Priority: optional Filename: pool/main/p/python-cobra/python3-cobra_0.29.0-2_amd64.deb Size: 1118916 MD5sum: 41c7c421fe298593278eab646868a4fd SHA256: 36873dc6c875d318fabafa0a092221bbf68a21a3345da4d017b5f99b4b0ec80f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-cobra=0.29.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-cobra=0.29.0-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmplmv1bmzg 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmplmv1bmzg 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmplmv1bmzg/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', 'update'] 0m1.7s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', 'update'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: 0942a352c5bc637c4fdbc12bf31cd5ba - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u5 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u4 install ok installed libc6:amd64 libc6 2.36-9+deb12u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.22-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.22-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m3.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 0m4.0s INFO: Running scripts is_testable 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s INFO: Running scripts pre_test 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_test_exceptions'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_test_exceptions'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_test_root_password'] 0m4.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_test_root_password'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'show', '--no-all-versions', 'python3-cobra'] 0m4.3s DUMP: Package: python3-cobra Source: python-cobra Version: 0.26.2-1 Installed-Size: 1873 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-appdirs (>= 1.4), python3-appdirs (<< 2), python3-depinfo, python3-diskcache, python3-future, python3-httpx, python3-importlib-resources, python3-numpy, python3-optlang, python3-pandas, python3-pydantic, python3-rich, python3-ruamel.yaml, python3-swiglpk (>= 4.65.1), python3:any, python-cobra-data (= 0.26.2-1), python3-simplejson, python3-tabulate, python3-sbml5 Suggests: python3-matplotlib, qsopt-ex Description-en: constraint-based modeling of biological networks with Python 3 COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely used for genome-scale modeling of metabolic networks in both prokaryotes and eukaryotes. COBRApy is a constraint-based modeling package that is designed to accommodate the biological complexity of the next generation of COBRA models and provides access to commonly used COBRA methods, such as flux balance analysis, flux variability analysis, and gene deletion analyses. Description-md5: 0052f98776eccb61924a15b5d6618e25 Homepage: https://opencobra.github.io/cobrapy/ Section: python Priority: optional Filename: pool/main/p/python-cobra/python3-cobra_0.26.2-1_amd64.deb Size: 1118596 MD5sum: 851a6826df7628af5b75ad6c9ffbc94d SHA256: 8ba34bdd35295cc18c96886f74d206bd456fede1919438d3efdff049703d1b68 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'show', '--no-all-versions', 'python3-cobra'] 0m4.3s INFO: apt-cache knows about the following packages: python3-cobra 0m4.3s INFO: Running scripts pre_install 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy'] 0m4.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.5,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy', 'python3-cobra'] 0m4.4s DUMP: python3-cobra: Installed: (none) Candidate: 0.26.2-1 Version table: 0.26.2-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy', 'python3-cobra'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', '-y', 'install', 'python3-cobra'] 0m42.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates libamd2 libblas3 libcolamd2 libexpat1 libgfortran5 libglpk40 libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libltdl7 libncursesw6 libnsl2 libpython3-stdlib libpython3.11 libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 libsqlite3-0 libssl3 libsuitesparseconfig5 libtirpc-common libtirpc3 libxml2 media-types openssl python-cobra-data python3 python3-anyio python3-appdirs python3-certifi python3-click python3-colorama python3-dateutil python3-depinfo python3-diskcache python3-future python3-h11 python3-httpcore python3-httpx python3-idna python3-importlib-resources python3-lib2to3 python3-markdown-it python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-optlang python3-pandas python3-pandas-lib python3-pkg-resources python3-pydantic python3-pygments python3-rfc3986 python3-rich python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-simplejson python3-six python3-sniffio python3-swiglpk python3-sympy python3-tabulate python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-minimal readline-common swig swig4.0 Suggested packages: libiodbc2-dev default-libmysqlclient-dev krb5-doc krb5-user python3-doc python3-tk python3-venv python3-matplotlib qsopt-ex python-future-doc python-mpmath-doc python3-gmpy2 gcc gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels python3-setuptools python-pygments-doc ttf-bitstream-vera texlive-fonts-extra dvipng python-sympy-doc python3.11-venv python3.11-doc binutils binfmt-support readline-doc swig-doc swig-examples swig4.0-examples swig4.0-doc Recommended packages: krb5-locales libgpm2 python3-scipy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-pil isympy-common The following NEW packages will be installed: ca-certificates libamd2 libblas3 libcolamd2 libexpat1 libgfortran5 libglpk40 libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libltdl7 libncursesw6 libnsl2 libpython3-stdlib libpython3.11 libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 libsqlite3-0 libssl3 libsuitesparseconfig5 libtirpc-common libtirpc3 libxml2 media-types openssl python-cobra-data python3 python3-anyio python3-appdirs python3-certifi python3-click python3-cobra python3-colorama python3-dateutil python3-depinfo python3-diskcache python3-future python3-h11 python3-httpcore python3-httpx python3-idna python3-importlib-resources python3-lib2to3 python3-markdown-it python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-optlang python3-pandas python3-pandas-lib python3-pkg-resources python3-pydantic python3-pygments python3-rfc3986 python3-rich python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-simplejson python3-six python3-sniffio python3-swiglpk python3-sympy python3-tabulate python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-minimal readline-common swig swig4.0 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 54.7 MB of archives. After this operation, 256 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u2 [2019 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:22 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u2 [1419 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libsuitesparseconfig5 amd64 1:5.12.0+dfsg-2 [23.9 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libamd2 amd64 1:5.12.0+dfsg-2 [36.2 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libcolamd2 amd64 1:5.12.0+dfsg-2 [32.9 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libglpk40 amd64 5.0-1 [400 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 python-cobra-data all 0.26.2-1 [1436 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 python3-sniffio all 1.2.0-1 [6372 B] Get:40 http://deb.debian.org/debian bookworm/main amd64 python3-typing-extensions all 4.4.0-1 [45.2 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 python3-anyio all 3.6.2-1 [54.0 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.6-2 [36.8 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 python3-click all 8.1.3-2 [92.2 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 python3-depinfo amd64 2.2.0-1 [11.6 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 python3-diskcache all 5.4.0-1 [33.7 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 python3-future all 0.18.2-6 [348 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get:53 http://deb.debian.org/debian bookworm/main amd64 python3-markdown-it all 2.1.0-5 [58.8 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 python3-rich all 13.3.1-1 [202 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 python3-h11 all 0.14.0-1 [50.1 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 python3-httpcore all 0.16.3-1 [38.4 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 python3-rfc3986 all 1.5.0-2 [22.2 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 python3-httpx all 0.23.3-1 [72.3 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get:61 http://deb.debian.org/debian bookworm/main amd64 python3-importlib-resources all 5.1.2-2 [19.0 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 python3-swiglpk amd64 4.65.1-1+b4 [62.6 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 python3-optlang all 1.5.2-1 [81.2 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 python3-pydantic all 1.10.4-1 [171 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml.clib amd64 0.2.7-1+b2 [113 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml all 0.17.21-1 [103 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 python3-simplejson amd64 3.18.3-1 [59.8 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 python3-tabulate all 0.8.9-1 [35.2 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 swig4.0 amd64 4.1.0-0.2 [1388 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 swig all 4.1.0-0.2 [321 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 python3-sbml5 amd64 5.19.7+dfsg-2 [3472 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 python3-cobra amd64 0.26.2-1 [1119 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.7 MB in 1s (72.7 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6102 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.11-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1~deb12u2) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. 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Unpacking libncursesw6:amd64 (6.4-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../03-libkrb5support0_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../04-libk5crypto3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../05-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../06-libkrb5-3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../07-libgssapi-krb5-2_1.20.1-2+deb12u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../08-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../09-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../10-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../11-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../12-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../13-libsqlite3-0_3.40.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.1-2) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../14-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../15-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../16-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6938 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_3.0.11-1~deb12u2_amd64.deb ... Unpacking openssl (3.0.11-1~deb12u2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libsuitesparseconfig5:amd64. Preparing to unpack .../03-libsuitesparseconfig5_1%3a5.12.0+dfsg-2_amd64.deb ... Unpacking libsuitesparseconfig5:amd64 (1:5.12.0+dfsg-2) ... Selecting previously unselected package libamd2:amd64. Preparing to unpack .../04-libamd2_1%3a5.12.0+dfsg-2_amd64.deb ... Unpacking libamd2:amd64 (1:5.12.0+dfsg-2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../05-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) ... Selecting previously unselected package libcolamd2:amd64. Preparing to unpack .../06-libcolamd2_1%3a5.12.0+dfsg-2_amd64.deb ... Unpacking libcolamd2:amd64 (1:5.12.0+dfsg-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../07-libquadmath0_12.2.0-14_amd64.deb ... Unpacking libquadmath0:amd64 (12.2.0-14) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../08-libgfortran5_12.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../09-libltdl7_2.4.7-5_amd64.deb ... Unpacking libltdl7:amd64 (2.4.7-5) ... Selecting previously unselected package libglpk40:amd64. Preparing to unpack .../10-libglpk40_5.0-1_amd64.deb ... Unpacking libglpk40:amd64 (5.0-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../11-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../12-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package libpython3.11:amd64. Preparing to unpack .../13-libpython3.11_3.11.2-6_amd64.deb ... Unpacking libpython3.11:amd64 (3.11.2-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../14-libxml2_2.9.14+dfsg-1.3~deb12u1_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package python-cobra-data. Preparing to unpack .../15-python-cobra-data_0.26.2-1_all.deb ... Unpacking python-cobra-data (0.26.2-1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../16-python3-idna_3.3-1_all.deb ... Unpacking python3-idna (3.3-1) ... Selecting previously unselected package python3-sniffio. Preparing to unpack .../17-python3-sniffio_1.2.0-1_all.deb ... Unpacking python3-sniffio (1.2.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../18-python3-typing-extensions_4.4.0-1_all.deb ... Unpacking python3-typing-extensions (4.4.0-1) ... Selecting previously unselected package python3-anyio. Preparing to unpack .../19-python3-anyio_3.6.2-1_all.deb ... Unpacking python3-anyio (3.6.2-1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../20-python3-appdirs_1.4.4-3_all.deb ... Unpacking python3-appdirs (1.4.4-3) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../21-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../22-python3-colorama_0.4.6-2_all.deb ... Unpacking python3-colorama (0.4.6-2) ... Selecting previously unselected package python3-click. Preparing to unpack .../23-python3-click_8.1.3-2_all.deb ... Unpacking python3-click (8.1.3-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../24-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-depinfo. Preparing to unpack .../25-python3-depinfo_2.2.0-1_amd64.deb ... Unpacking python3-depinfo (2.2.0-1) ... Selecting previously unselected package python3-diskcache. Preparing to unpack .../26-python3-diskcache_5.4.0-1_all.deb ... Unpacking python3-diskcache (5.4.0-1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../27-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-future. Preparing to unpack .../28-python3-future_0.18.2-6_all.deb ... Unpacking python3-future (0.18.2-6) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../29-python3-pygments_2.14.0+dfsg-1_all.deb ... Unpacking python3-pygments (2.14.0+dfsg-1) ... Selecting previously unselected package python3-mdurl. Preparing to unpack .../30-python3-mdurl_0.1.2-1_all.deb ... Unpacking python3-mdurl (0.1.2-1) ... Selecting previously unselected package python3-markdown-it. Preparing to unpack .../31-python3-markdown-it_2.1.0-5_all.deb ... Unpacking python3-markdown-it (2.1.0-5) ... Selecting previously unselected package python3-rich. Preparing to unpack .../32-python3-rich_13.3.1-1_all.deb ... Unpacking python3-rich (13.3.1-1) ... Selecting previously unselected package python3-h11. Preparing to unpack .../33-python3-h11_0.14.0-1_all.deb ... Unpacking python3-h11 (0.14.0-1) ... Selecting previously unselected package python3-httpcore. Preparing to unpack .../34-python3-httpcore_0.16.3-1_all.deb ... Unpacking python3-httpcore (0.16.3-1) ... Selecting previously unselected package python3-rfc3986. Preparing to unpack .../35-python3-rfc3986_1.5.0-2_all.deb ... Unpacking python3-rfc3986 (1.5.0-2) ... Selecting previously unselected package python3-httpx. Preparing to unpack .../36-python3-httpx_0.23.3-1_all.deb ... Unpacking python3-httpx (0.23.3-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../37-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../38-python3-zipp_1.0.0-6_all.deb ... Unpacking python3-zipp (1.0.0-6) ... Selecting previously unselected package python3-importlib-resources. Preparing to unpack .../39-python3-importlib-resources_5.1.2-2_all.deb ... Unpacking python3-importlib-resources (5.1.2-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../40-python3-numpy_1%3a1.24.2-1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../41-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-swiglpk. Preparing to unpack .../42-python3-swiglpk_4.65.1-1+b4_amd64.deb ... Unpacking python3-swiglpk (4.65.1-1+b4) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../43-python3-mpmath_1.2.1-2_all.deb ... Unpacking python3-mpmath (1.2.1-2) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../44-python3-sympy_1.11.1-1_all.deb ... Unpacking python3-sympy (1.11.1-1) ... Selecting previously unselected package python3-optlang. Preparing to unpack .../45-python3-optlang_1.5.2-1_all.deb ... Unpacking python3-optlang (1.5.2-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../46-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-tz. Preparing to unpack .../47-python3-tz_2022.7.1-4_all.deb ... Unpacking python3-tz (2022.7.1-4) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../48-python3-pandas-lib_1.5.3+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../49-python3-pandas_1.5.3+dfsg-2_all.deb ... Unpacking python3-pandas (1.5.3+dfsg-2) ... Selecting previously unselected package python3-pydantic. Preparing to unpack .../50-python3-pydantic_1.10.4-1_all.deb ... Unpacking python3-pydantic (1.10.4-1) ... Selecting previously unselected package python3-ruamel.yaml.clib:amd64. Preparing to unpack .../51-python3-ruamel.yaml.clib_0.2.7-1+b2_amd64.deb ... Unpacking python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Selecting previously unselected package python3-ruamel.yaml. Preparing to unpack .../52-python3-ruamel.yaml_0.17.21-1_all.deb ... Unpacking python3-ruamel.yaml (0.17.21-1) ... Selecting previously unselected package python3-simplejson. Preparing to unpack .../53-python3-simplejson_3.18.3-1_amd64.deb ... Unpacking python3-simplejson (3.18.3-1) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../54-python3-tabulate_0.8.9-1_all.deb ... Unpacking python3-tabulate (0.8.9-1) ... Selecting previously unselected package swig4.0. Preparing to unpack .../55-swig4.0_4.1.0-0.2_amd64.deb ... Unpacking swig4.0 (4.1.0-0.2) ... Selecting previously unselected package swig. Preparing to unpack .../56-swig_4.1.0-0.2_all.deb ... Unpacking swig (4.1.0-0.2) ... Selecting previously unselected package python3-sbml5. Preparing to unpack .../57-python3-sbml5_5.19.7+dfsg-2_amd64.deb ... Unpacking python3-sbml5 (5.19.7+dfsg-2) ... Selecting previously unselected package python3-cobra. Preparing to unpack .../58-python3-cobra_0.26.2-1_amd64.deb ... Unpacking python3-cobra (0.26.2-1) ... Setting up media-types (10.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libicu72:amd64 (72.1-3) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libltdl7:amd64 (2.4.7-5) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up swig4.0 (4.1.0-0.2) ... Setting up openssl (3.0.11-1~deb12u2) ... Setting up python-cobra-data (0.26.2-1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up libsuitesparseconfig5:amd64 (1:5.12.0+dfsg-2) ... Setting up libamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up swig (4.1.0-0.2) ... Setting up libcolamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libglpk40:amd64 (5.0-1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-sbml5 (5.19.7+dfsg-2) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.18.3-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-idna (3.3-1) ... Setting up python3-h11 (0.14.0-1) ... Setting up python3-typing-extensions (4.4.0-1) ... Setting up python3-markdown-it (2.1.0-5) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-diskcache (5.4.0-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-swiglpk (4.65.1-1+b4) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-sniffio (1.2.0-1) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-anyio (3.6.2-1) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Setting up python3-tabulate (0.8.9-1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-click (8.1.3-2) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-rfc3986 (1.5.0-2) ... Setting up python3-pydantic (1.10.4-1) ... Setting up python3-depinfo (2.2.0-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-ruamel.yaml (0.17.21-1) ... Setting up python3-future (0.18.2-6) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-optlang (1.5.2-1) ... Setting up python3-httpcore (0.16.3-1) ... Setting up python3-importlib-resources (5.1.2-2) ... Setting up python3-rich (13.3.1-1) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up python3-httpx (0.23.3-1) ... Setting up python3-cobra (0.26.2-1) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m42.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', '-y', 'install', 'python3-cobra'] 0m42.3s INFO: Running scripts post_install 0m42.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_install_exceptions'] 0m42.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_install_exceptions'] 0m42.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 0m43.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 0m43.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmplmv1bmzg to sid 0m43.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m43.5s INFO: Running scripts pre_distupgrade 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_distupgrade_exceptions'] 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_distupgrade_exceptions'] 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', 'update'] 0m47.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9875 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7195 kB] Fetched 17.3 MB in 3s (5534 kB/s) Reading package lists... 0m47.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', 'update'] 0m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', '-yf', 'dist-upgrade'] 1m48.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libamd2 libcolamd2 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnsl2 libquadmath0 libsuitesparseconfig5 libtirpc-common libtirpc3t64 python3-future python3-lib2to3 python3-rfc3986 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0 libdb5.3 libext2fs2 libgnutls30 libhogweed6 libnettle8 libpython3.11 libreadline8 libssl3 libtirpc3 swig4.0 The following NEW packages will be installed: gcc-14-base libamd3 libapt-pkg6.0t64 libcolamd3 libdb5.3t64 libext2fs2t64 libgnutls30t64 libgomp1 libhogweed6t64 libnettle8t64 libpython3.11t64 libreadline8t64 libssl3t64 libsuitesparseconfig7 libtirpc3t64 libunistring5 netbase The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils ca-certificates coreutils dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils gcc-12-base gpgv grep gzip hostname init-system-helpers libacl1 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbz2-1.0 libc-bin libc6 libcap-ng0 libcap2 libcom-err2 libcrypt1 libdebconfclient0 libexpat1 libffi8 libgcc-s1 libgcrypt20 libgfortran5 libglpk40 libgmp10 libgpg-error0 libgssapi-krb5-2 libicu72 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libltdl7 liblz4-1 liblzma5 libmd0 libmount1 libncursesw6 libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-common libudev1 libuuid1 libxml2 libxxhash0 libzstd1 login logsave mawk media-types mount ncurses-base ncurses-bin openssl passwd perl-base python-cobra-data python3 python3-anyio python3-appdirs python3-certifi python3-click python3-cobra python3-colorama python3-dateutil python3-depinfo python3-diskcache python3-httpcore python3-httpx python3-idna python3-importlib-resources python3-lib2to3 python3-markdown-it python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-optlang python3-pandas python3-pandas-lib python3-pkg-resources python3-pydantic python3-pygments python3-rfc3986 python3-rich python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-simplejson python3-six python3-sniffio python3-swiglpk python3-sympy python3-tabulate python3-typing-extensions python3-tz python3.11 python3.11-minimal readline-common sed swig sysvinit-utils tar tzdata usr-is-merged util-linux util-linux-extra zlib1g 149 upgraded, 17 newly installed, 11 to remove and 0 not upgraded. Need to get 94.4 MB of archives. After this operation, 49.1 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13.1 [70.8 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.17 [89.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-18 [2757 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-18 [603 kB] Get:6 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14-20240330-1 [43.2 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14-20240330-1 [71.9 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3+b1 [78.1 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2+b1 [708 kB] Get:12 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-2 [61.4 kB] Get:13 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1 [240 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255.5-1 [364 kB] Get:15 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40-8 [101 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:17 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:18 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-2.1 [11.4 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.5-1 [17.1 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-2.1 [48.5 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:23 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-4 [1643 kB] Get:24 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.86 [119 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.3-7 [67.7 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2+b2 [74.9 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.2.1-3 [2244 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:34 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get:35 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [697 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-7 [54.4 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-7 [265 kB] Get:43 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240414-1 [135 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20240414-1 [344 kB] Get:46 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3.1 [87.6 kB] Get:47 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:48 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-3 [255 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [38.0 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.3-1 [896 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.1~rc1-1 [22.3 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:54 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3.1 [2950 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14-20240330-1 [713 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.9.1-2.2 [296 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.9.1-2.2 [328 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.2-1 [425 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.5-2 [1437 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255.5-1 [126 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.2 [989 kB] Get:66 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.2 [1396 kB] Get:67 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:68 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.6 [1510 kB] Get:69 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:70 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:71 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:72 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:73 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1.1 [133 kB] Get:74 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:75 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-4 [616 kB] Get:76 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20240414-1 [433 kB] Get:77 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40-8 [164 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40-8 [195 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40-8 [135 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40-8 [32.6 kB] Get:82 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40-8 [1206 kB] Get:83 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.40-8 [254 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271+b3 [10.2 kB] Get:85 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:87 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2+b1 [278 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b3 [90.3 kB] Get:89 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-4 [973 kB] Get:90 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:91 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.40-3 [649 kB] Get:92 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:94 http://deb.debian.org/debian sid/main amd64 usr-is-merged all 39 [5572 B] Get:95 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:96 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20240414-1 [269 kB] Get:97 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.09-1 [32.3 kB] Get:98 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.1~rc1-1 [22.2 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libext2fs2t64 amd64 1.47.1~rc1-1 [209 kB] Get:100 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.1~rc1-1 [582 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get:104 http://deb.debian.org/debian sid/main amd64 swig amd64 4.2.1-1 [1437 kB] Get:105 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40-8 [147 kB] Get:106 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.1.4+dfsg-7 [3015 kB] Get:107 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get:108 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get:109 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get:110 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get:113 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:114 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:115 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get:116 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:117 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-7 [7883 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get:119 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.3-7 [140 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-1 [32.4 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:123 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240123-1 [136 kB] Get:124 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14-20240330-1 [147 kB] Get:126 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.3.0-17 [42.6 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240330-1 [136 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libsuitesparseconfig7 amd64 1:7.7.0+dfsg-2 [22.4 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libamd3 amd64 1:7.7.0+dfsg-2 [39.0 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libcolamd3 amd64 1:7.7.0+dfsg-2 [31.3 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libglpk40 amd64 5.0-1+b1 [397 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.1~rc1-1 [27.1 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get:136 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:137 http://deb.debian.org/debian sid/main amd64 python3-depinfo amd64 2.2.0-2 [11.5 kB] Get:138 http://deb.debian.org/debian sid/main amd64 python3-diskcache all 5.6.3-1 [34.4 kB] Get:139 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:140 http://deb.debian.org/debian sid/main amd64 python3-click all 8.1.7-1 [94.0 kB] Get:141 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get:142 http://deb.debian.org/debian sid/main amd64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get:143 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get:144 http://deb.debian.org/debian sid/main amd64 python3-rich all 13.7.1-1 [201 kB] Get:145 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2 [37.0 kB] Get:146 http://deb.debian.org/debian sid/main amd64 python3-sniffio all 1.3.0-2 [7076 B] Get:147 http://deb.debian.org/debian sid/main amd64 python3-anyio all 4.3.0-1 [56.5 kB] Get:148 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:149 http://deb.debian.org/debian sid/main amd64 python3-httpcore all 1.0.4-1 [44.5 kB] Get:150 http://deb.debian.org/debian sid/main amd64 python3-httpx all 0.27.0-1 [76.8 kB] Get:151 http://deb.debian.org/debian sid/main amd64 python3-importlib-resources all 6.0.1-1 [21.7 kB] Get:152 http://deb.debian.org/debian sid/main amd64 python3-swiglpk amd64 5.0.10-1 [97.9 kB] Get:153 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:154 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.12-7 [3869 kB] Get:155 http://deb.debian.org/debian sid/main amd64 python3-optlang all 1.8.1-1 [82.4 kB] Get:156 http://deb.debian.org/debian sid/main amd64 python3-pydantic amd64 1.10.14-1 [3213 kB] Get:157 http://deb.debian.org/debian sid/main amd64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get:158 http://deb.debian.org/debian sid/main amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-1 [188 kB] Get:159 http://deb.debian.org/debian sid/main amd64 python3-simplejson amd64 3.19.2-1+b1 [69.4 kB] Get:160 http://deb.debian.org/debian sid/main amd64 python3-tabulate all 0.8.10-1 [38.8 kB] Get:161 http://deb.debian.org/debian sid/main amd64 python3-sbml5 amd64 5.20.2+dfsg-3 [3550 kB] Get:162 http://deb.debian.org/debian sid/main amd64 python3-cobra amd64 0.29.0-2 [1119 kB] Get:163 http://deb.debian.org/debian sid/main amd64 python-cobra-data all 0.29.0-2 [1438 kB] Get:164 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get:165 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.2.0-1 [59.9 kB] Get:166 http://deb.debian.org/debian sid/main amd64 python3-rfc3986 all 2.0.0-2 [21.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 94.4 MB in 1s (142 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14798 files and directories currently installed.) Preparing to unpack .../libsystemd0_255.5-1_amd64.deb ... Unpacking libsystemd0:amd64 (255.5-1) over (252.22-1~deb12u1) ... Setting up libsystemd0:amd64 (255.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14798 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40-8_amd64.deb ... Unpacking bsdutils (1:2.40-8) over (1:2.38.1-5+b1) ... Setting up bsdutils (1:2.40-8) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14798 files and directories currently installed.) Preparing to unpack .../openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) over (3.0.11-1~deb12u2) ... Selecting previously unselected package netbase. Preparing to unpack .../archives/netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1_all.deb ... Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.0.9-1) ... Setting up libaudit-common (1:3.1.2-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14825 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.5-1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.5-1) over (0.8.3-1+b3) ... Setting up libcap-ng0:amd64 (0.8.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14824 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_amd64.deb ... Unpacking libaudit1:amd64 (1:3.1.2-2.1) over (1:3.0.9-1) ... Setting up libaudit1:amd64 (1:3.1.2-2.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14828 files and directories currently installed.) Preparing to unpack .../debconf_1.5.86_all.deb ... Unpacking debconf (1.5.86) over (1.5.82) ... Setting up debconf (1.5.86) ... Installing new version of config file /etc/debconf.conf ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14826 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-4+b1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.42-4+b1) over (10.42-1) ... Setting up libpcre2-8-0:amd64 (10.42-4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14827 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-2+b2_amd64.deb ... Unpacking libselinux1:amd64 (3.5-2+b2) over (3.4-1+b6) ... Setting up libselinux1:amd64 (3.5-2+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14828 files and directories currently installed.) Preparing to unpack .../libk5crypto3_1.20.1-6+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-6+b1) over (1.20.1-2+deb12u1) ... Preparing to unpack .../libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) over (1.20.1-2+deb12u1) ... Preparing to unpack .../libkrb5support0_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6+b1) over (1.20.1-2+deb12u1) ... Preparing to unpack .../libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) over (1.20.1-2+deb12u1) ... dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: libpython3.11-minimal:amd64 depends on libssl3 (>= 3.0.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14833 files and directories currently installed.) Removing libssl3:amd64 (3.0.11-1~deb12u2) ... Selecting previously unselected package libssl3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14821 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_amd64.deb ... Unpacking libssl3t64:amd64 (3.2.1-3) ... Setting up libssl3t64:amd64 (3.2.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14836 files and directories currently installed.) Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) over (2.5.0-1) ... Preparing to unpack .../python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) over (3.11.2-6) ... Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) over (3.11.2-6) ... Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) over (3.11.2-6) ... dpkg: libreadline8:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libreadline8 (>= 7.0~beta). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14836 files and directories currently installed.) Removing libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14823 files and directories currently installed.) Preparing to unpack .../libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... dpkg: libpython3.11:amd64: dependency problems, but removing anyway as you requested: python3-sbml5 depends on libpython3.11 (>= 3.11.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14844 files and directories currently installed.) Removing libpython3.11:amd64 (3.11.2-6) ... Selecting previously unselected package libpython3.11t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14838 files and directories currently installed.) Preparing to unpack .../libpython3.11t64_3.11.9-1_amd64.deb ... Unpacking libpython3.11t64:amd64 (3.11.9-1) ... Preparing to unpack .../libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) over (3.11.2-6) ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14861 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14855 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14861 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.3-7_amd64.deb ... Unpacking libpam-modules-bin (1.5.3-7) over (1.5.2-6+deb12u1) ... Setting up libpam-modules-bin (1.5.3-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14860 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-7_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.3-7) over (1.5.2-6+deb12u1) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu/security': Directory not empty Setting up libpam-modules:amd64 (1.5.3-7) ... Installing new version of config file /etc/security/namespace.init ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14860 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) over (8.2-1.3) ... Preparing to unpack .../libncursesw6_6.4+20240414-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20240414-1) over (6.4-4) ... Preparing to unpack .../libtinfo6_6.4+20240414-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.4+20240414-1) over (6.4-4) ... Setting up libtinfo6:amd64 (6.4+20240414-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14860 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg-3.1) over (1:1.2.13.dfsg-1) ... Setting up zlib1g:amd64 (1:1.3.dfsg-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14860 files and directories currently installed.) Preparing to unpack .../media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) over (10.0.0) ... Preparing to unpack .../tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) over (2024a-0+deb12u1) ... Preparing to unpack .../libbz2-1.0_1.0.8-5.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-5.1) over (1.0.8-5+b1) ... Setting up libbz2-1.0:amd64 (1.0.8-5.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14075 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) over (3.4.4-1) ... Setting up libffi8:amd64 (3.4.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14075 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.45.3-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.3-1) over (3.40.1-2) ... Preparing to unpack .../libcom-err2_1.47.1~rc1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1~rc1-1) over (1.47.0-2) ... Preparing to unpack .../libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) over (1.6.3-2) ... Preparing to unpack .../coreutils_9.4-3.1_amd64.deb ... Unpacking coreutils (9.4-3.1) over (9.1-1) ... Setting up coreutils (9.4-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14080 files and directories currently installed.) Preparing to unpack .../libstdc++6_14-20240330-1_amd64.deb ... Unpacking libstdc++6:amd64 (14-20240330-1) over (12.2.0-14) ... Setting up libstdc++6:amd64 (14-20240330-1) ... dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: libhogweed6:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.7~). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14080 files and directories currently installed.) Removing libnettle8:amd64 (3.8.1-2) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14072 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2_amd64.deb ... Unpacking libnettle8t64:amd64 (3.9.1-2.2) ... Setting up libnettle8t64:amd64 (3.9.1-2.2) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: libgnutls30:amd64 depends on libhogweed6 (>= 3.6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14081 files and directories currently installed.) Removing libhogweed6:amd64 (3.8.1-2) ... Selecting previously unselected package libhogweed6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14075 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.9.1-2.2) ... Setting up libhogweed6t64:amd64 (3.9.1-2.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14082 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-4_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.3-4) over (0.24.1-2) ... Setting up libp11-kit0:amd64 (0.25.3-4) ... Selecting previously unselected package libunistring5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14082 files and directories currently installed.) Preparing to unpack .../libunistring5_1.2-1_amd64.deb ... Unpacking libunistring5:amd64 (1.2-1) ... Setting up libunistring5:amd64 (1.2-1) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.5). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14088 files and directories currently installed.) Removing libgnutls30:amd64 (3.7.9-2+deb12u2) ... Selecting previously unselected package libgnutls30t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14059 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.5-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.5-2) ... Setting up libgnutls30t64:amd64 (3.8.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14088 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2) over (2.3.3-1+b1) ... Setting up libidn2-0:amd64 (2.3.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14088 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3+b2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b2) over (4.19.0-2) ... Setting up libtasn1-6:amd64 (4.19.0-3+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14089 files and directories currently installed.) Preparing to unpack .../libudev1_255.5-1_amd64.deb ... Unpacking libudev1:amd64 (255.5-1) over (252.22-1~deb12u1) ... Setting up libudev1:amd64 (255.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14089 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b1) over (0.8.1-1) ... Setting up libxxhash0:amd64 (0.8.2-2+b1) ... dpkg: libapt-pkg6.0:amd64: dependency problems, but removing anyway as you requested: apt depends on libapt-pkg6.0 (>= 2.6.1). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14090 files and directories currently installed.) Removing libapt-pkg6.0:amd64 (2.6.1) ... Selecting previously unselected package libapt-pkg6.0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14041 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.2_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.2) ... Setting up libapt-pkg6.0t64:amd64 (2.9.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14091 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.2_amd64.deb ... Unpacking apt (2.9.2) over (2.6.1) ... Setting up apt (2.9.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14087 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3_amd64.deb ... Unpacking tar (1.35+dfsg-3) over (1.34+dfsg-1.2+deb12u1) ... Setting up tar (1.35+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14088 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.6_amd64.deb ... Unpacking dpkg (1.22.6) over (1.21.22) ... Setting up dpkg (1.22.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14076 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6_amd64.deb ... Unpacking dash (0.5.12-6) over (0.5.12-2) ... Setting up dash (0.5.12-6) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14074 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_amd64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14076 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_amd64.deb ... Unpacking findutils (4.9.0-5) over (4.9.0-4) ... Setting up findutils (4.9.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14076 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-4_amd64.deb ... Unpacking grep (3.11-4) over (3.8-5) ... Setting up grep (3.11-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14076 files and directories currently installed.) Preparing to unpack .../gzip_1.12-1.1_amd64.deb ... Unpacking gzip (1.12-1.1) over (1.12-1) ... dpkg: warning: old file '/bin/uncompress' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') dpkg: warning: old file '/bin/gunzip' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') Setting up gzip (1.12-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14076 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu2_amd64.deb ... Unpacking hostname (3.23+nmu2) over (3.23+nmu1) ... Setting up hostname (3.23+nmu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14076 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking login (1:4.13+dfsg1-4) over (1:4.13+dfsg1-1+b1) ... Setting up login (1:4.13+dfsg1-4) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14075 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20240414-1_amd64.deb ... Unpacking ncurses-bin (6.4+20240414-1) over (6.4-4) ... Setting up ncurses-bin (6.4+20240414-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14075 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.9-1) ... Setting up sed (4.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14075 files and directories currently installed.) Preparing to unpack .../libblkid1_2.40-8_amd64.deb ... Unpacking libblkid1:amd64 (2.40-8) over (2.38.1-5+b1) ... Setting up libblkid1:amd64 (2.40-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14074 files and directories currently installed.) Preparing to unpack .../libmount1_2.40-8_amd64.deb ... Unpacking libmount1:amd64 (2.40-8) over (2.38.1-5+b1) ... Setting up libmount1:amd64 (2.40-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14073 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40-8_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40-8) over (2.38.1-5+b1) ... Setting up libsmartcols1:amd64 (2.40-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14072 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40-8_amd64.deb ... Unpacking libuuid1:amd64 (2.40-8) over (2.38.1-5+b1) ... Setting up libuuid1:amd64 (2.40-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14071 files and directories currently installed.) Preparing to unpack .../util-linux_2.40-8_amd64.deb ... Unpacking util-linux (2.40-8) over (2.38.1-5+b1) ... Setting up util-linux (2.40-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14047 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.40-8_amd64.deb ... Adding 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.40-8) over (2.38.1-5+b1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty Setting up util-linux-extra (2.40-8) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14086 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b3_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1+b3) over (3.4-1+b5) ... Setting up libsemanage2:amd64 (3.5-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14086 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking passwd (1:4.13+dfsg1-4) over (1:4.13+dfsg1-1+b1) ... Setting up passwd (1:4.13+dfsg1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14085 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... Unpacking adduser (3.137) over (3.134) ... Setting up adduser (3.137) ... Installing new version of config file /etc/adduser.conf ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14079 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.4_all.deb ... Unpacking debian-archive-keyring (2023.4) over (2023.3+deb12u1) ... Setting up debian-archive-keyring (2023.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14079 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1) over (2.5.4-1+b3) ... Setting up libseccomp2:amd64 (2.5.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14078 files and directories currently installed.) Preparing to unpack .../usr-is-merged_39_all.deb ... Unpacking usr-is-merged (39) over (37~deb12u1) ... Setting up usr-is-merged (39) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14078 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66_all.deb ... Unpacking init-system-helpers (1.66) over (1.65.2) ... Setting up init-system-helpers (1.66) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14078 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20240414-1_all.deb ... Unpacking ncurses-base (6.4+20240414-1) over (6.4-4) ... Setting up ncurses-base (6.4+20240414-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14076 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.09-1_amd64.deb ... Unpacking sysvinit-utils (3.09-1) over (3.06-4) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.09-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14076 files and directories currently installed.) Preparing to unpack .../logsave_1.47.1~rc1-1_amd64.deb ... Unpacking logsave (1.47.1~rc1-1) over (1.47.0-2) ... dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.47.0-2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14076 files and directories currently installed.) Removing libext2fs2:amd64 (1.47.0-2) ... Selecting previously unselected package libext2fs2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14069 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.1~rc1-1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.1~rc1-1) ... Setting up libcom-err2:amd64 (1.47.1~rc1-1) ... Setting up libext2fs2t64:amd64 (1.47.1~rc1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14085 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.1~rc1-1_amd64.deb ... Unpacking e2fsprogs (1.47.1~rc1-1) over (1.47.0-2) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Preparing to unpack .../libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) over (1.3.3+ds-1) ... Preparing to unpack .../libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) over (1.3.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14084 files and directories currently installed.) Removing libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14077 files and directories currently installed.) Preparing to unpack .../libtirpc3t64_1.3.4+ds-1.3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... dpkg: swig4.0: dependency problems, but removing anyway as you requested: swig depends on swig4.0 (>= 4.1.0-0.2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14089 files and directories currently installed.) Removing swig4.0 (4.1.0-0.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13293 files and directories currently installed.) Preparing to unpack .../swig_4.2.1-1_amd64.deb ... Unpacking swig (4.2.1-1) over (4.1.0-0.2) ... Preparing to unpack .../mount_2.40-8_amd64.deb ... Unpacking mount (2.40-8) over (2.38.1-5+b1) ... Preparing to unpack .../python3-pandas_2.1.4+dfsg-7_all.deb ... Unpacking python3-pandas (2.1.4+dfsg-7) over (1.5.3+dfsg-2) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14139 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) over (3.11.2-1+b1) ... Setting up python3-minimal (3.11.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14138 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) over (3.11.2-1+b1) ... Preparing to unpack .../01-python3-six_1.16.0-6_all.deb ... Unpacking python3-six (1.16.0-6) over (1.16.0-4) ... Preparing to unpack .../02-python3-dateutil_2.9.0-2_all.deb ... Unpacking python3-dateutil (2.9.0-2) over (2.8.2-2) ... Preparing to unpack .../03-libblas3_3.12.0-3_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-3) over (3.11.0-2) ... Preparing to unpack .../04-libgfortran5_14-20240330-1_amd64.deb ... Unpacking libgfortran5:amd64 (14-20240330-1) over (12.2.0-14) ... Preparing to unpack .../05-liblapack3_3.12.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-3) over (3.11.0-2) ... Preparing to unpack .../06-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) over (66.1.1-1) ... Preparing to unpack .../07-python3-numpy_1%3a1.26.4+ds-8_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-8) over (1:1.24.2-1) ... Preparing to unpack .../08-python3-tz_2024.1-2_all.deb ... Unpacking python3-tz (2024.1-2) over (2022.7.1-4) ... Preparing to unpack .../09-python3-pandas-lib_2.1.4+dfsg-7_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-7) over (1.5.3+dfsg-2) ... Preparing to unpack .../10-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) over (3.11.2-1+b1) ... 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Running hooks in /etc/ca-certificates/update.d... done. 1m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', '-yf', 'dist-upgrade'] 1m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m50.4s DUMP: 70d2f606a49e53da34a83175916ffad4 - 1m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'show', '--no-all-versions', 'python3-cobra'] 1m50.7s DUMP: Package: python3-cobra Source: python-cobra Version: 0.29.0-2 Installed-Size: 1875 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-appdirs (>= 1.4), python3-appdirs (<< 2), python3-depinfo, python3-diskcache, python3-httpx, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-pandas, python3-pydantic, python3-rich, python3-ruamel.yaml, python3-swiglpk (>= 5.0.8-1~), python3:any, python-cobra-data (= 0.29.0-2), python3-simplejson, python3-tabulate, python3-sbml5 Suggests: python3-matplotlib, qsopt-ex Description-en: constraint-based modeling of biological networks with Python 3 COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely used for genome-scale modeling of metabolic networks in both prokaryotes and eukaryotes. COBRApy is a constraint-based modeling package that is designed to accommodate the biological complexity of the next generation of COBRA models and provides access to commonly used COBRA methods, such as flux balance analysis, flux variability analysis, and gene deletion analyses. Description-md5: 0052f98776eccb61924a15b5d6618e25 Homepage: https://opencobra.github.io/cobrapy/ Section: python Priority: optional Filename: pool/main/p/python-cobra/python3-cobra_0.29.0-2_amd64.deb Size: 1118916 MD5sum: 41c7c421fe298593278eab646868a4fd SHA256: 36873dc6c875d318fabafa0a092221bbf68a21a3345da4d017b5f99b4b0ec80f 1m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'show', '--no-all-versions', 'python3-cobra'] 1m50.7s INFO: apt-cache knows about the following packages: python3-cobra 1m50.7s INFO: Running scripts pre_install 1m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_database-server'] 1m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_database-server'] 1m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_exceptions'] 1m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_exceptions'] 1m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_extras'] 1m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_extras'] 1m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture'] 1m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture'] 1m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy'] 1m50.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy'] 1m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy', 'python3-cobra'] 1m50.9s DUMP: python3-cobra: Installed: 0.29.0-2 Candidate: 0.29.0-2 Version table: *** 0.29.0-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy', 'python3-cobra'] 1m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', '-y', 'install', 'python3-cobra'] 1m51.7s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-cobra is already the newest version (0.29.0-2). The following packages were automatically installed and are no longer required: libamd2 libcolamd2 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnsl2 libquadmath0 libsuitesparseconfig5 libtirpc-common libtirpc3t64 python3-future python3-lib2to3 python3-rfc3986 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', '-y', 'install', 'python3-cobra'] 1m51.7s INFO: Running scripts post_install 1m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_install_exceptions'] 1m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_install_exceptions'] 1m51.7s INFO: Running scripts post_distupgrade 1m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_distupgrade_exceptions'] 1m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_distupgrade_exceptions'] 1m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_distupgrade_zz_backports'] 1m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_distupgrade_zz_backports'] 1m51.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 1m52.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 1m52.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 1m54.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 1m54.0s INFO: Running scripts pre_install 1m54.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_database-server'] 1m54.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_database-server'] 1m54.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_exceptions'] 1m54.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_exceptions'] 1m54.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_extras'] 1m54.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_extras'] 1m54.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture'] 1m54.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture'] 1m54.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m54.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m54.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy'] 1m54.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy'] 1m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy', 'python3-cobra'] 1m54.1s DUMP: python3-cobra: Installed: 0.29.0-2 Candidate: 0.29.0-2 Version table: *** 0.29.0-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-cache', 'policy', 'python3-cobra'] 1m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', '-y', 'install', 'python3-cobra=0.29.0-2'] 1m54.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-cobra is already the newest version (0.29.0-2). The following packages were automatically installed and are no longer required: libamd2 libcolamd2 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnsl2 libquadmath0 libsuitesparseconfig5 libtirpc-common libtirpc3t64 python3-future python3-lib2to3 python3-rfc3986 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', '-y', 'install', 'python3-cobra=0.29.0-2'] 1m54.8s INFO: Running scripts post_install 1m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_install_exceptions'] 1m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_install_exceptions'] 1m54.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 1m56.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 1m56.2s INFO: /bin converted to /usr/bin by /usr merge 1m56.2s INFO: /lib converted to /usr/lib by /usr merge 1m56.2s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m56.2s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m56.2s INFO: /sbin converted to /usr/sbin by /usr merge 1m57.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', '-ac', '--ignore-obsolete'] 2m0.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', '-ac', '--ignore-obsolete'] 2m0.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m0.1s DUMP: 0.15.6 2m0.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m0.1s INFO: Running adequate version 0.15.6 now. 2m0.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'python3-cobra'] 2m0.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'python3-cobra'] 2m0.2s INFO: Running scripts pre_remove 2m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_exceptions'] 2m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/pre_remove_exceptions'] 2m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m2.2s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.9.2 install ok installed base-files base-files 13.1 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-8 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.1~rc1-1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-12-base:amd64 gcc-12-base 12.3.0-17 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libamd2:amd64 libamd2 1:5.12.0+dfsg-2 install ok installed libamd3:amd64 libamd3 1:7.7.0+dfsg-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.40-8 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-18 install ok installed libc6:amd64 libc6 2.37-18 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcolamd2:amd64 libcolamd2 1:5.12.0+dfsg-2 install ok installed libcolamd3:amd64 libcolamd3 1:7.7.0+dfsg-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.1~rc1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1~rc1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2+b1 install ok installed libgfortran5:amd64 libgfortran5 14-20240330-1 install ok installed libglpk40:amd64 libglpk40 5.0-1+b1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgomp1:amd64 libgomp1 14-20240330-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-6+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-6+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-6+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-6+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed libltdl7:amd64 libltdl7 2.4.7-7+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-8 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240414-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.8-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.9-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.9-1 install ok installed libpython3.11t64:amd64 libpython3.11t64 3.11.9-1 install ok installed libquadmath0:amd64 libquadmath0 14-20240330-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-8 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.3-1 install ok installed libss2:amd64 libss2 1.47.1~rc1-1 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsuitesparseconfig5:amd64 libsuitesparseconfig5 1:5.12.0+dfsg-2 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.7.0+dfsg-2 install ok installed libsystemd0:amd64 libsystemd0 255.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240414-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3 install ok installed libudev1:amd64 libudev1 255.5-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-8 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b3 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.1~rc1-1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40-8 install ok installed ncurses-base ncurses-base 6.4+20240414-1 install ok installed ncurses-bin ncurses-bin 6.4+20240414-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.2.1-3 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-4 install ok installed python-cobra-data python-cobra-data 0.29.0-2 install ok installed python3 python3 3.11.8-1 install ok installed python3-anyio python3-anyio 4.3.0-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-click python3-click 8.1.7-1 install ok installed python3-cobra python3-cobra 0.29.0-2 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-dateutil python3-dateutil 2.9.0-2 install ok installed python3-depinfo python3-depinfo 2.2.0-2 install ok installed python3-diskcache python3-diskcache 5.6.3-1 install ok installed python3-future python3-future 0.18.2-6 install ok installed python3-h11 python3-h11 0.14.0-1 install ok installed python3-httpcore python3-httpcore 1.0.4-1 install ok installed python3-httpx python3-httpx 0.27.0-1 install ok installed python3-idna python3-idna 3.6-2 install ok installed python3-importlib-resources python3-importlib-resources 6.0.1-1 install ok installed python3-lib2to3 python3-lib2to3 3.12.3-1 install ok installed python3-markdown-it python3-markdown-it 3.0.0-2 install ok installed python3-mdurl python3-mdurl 0.1.2-1 install ok installed python3-minimal python3-minimal 3.11.8-1 install ok installed python3-more-itertools python3-more-itertools 10.2.0-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-8 install ok installed python3-optlang python3-optlang 1.8.1-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-7 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-7 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-pydantic python3-pydantic 1.10.14-1 install ok installed python3-pygments python3-pygments 2.17.2+dfsg-1 install ok installed python3-rfc3986 python3-rfc3986 2.0.0-2 install ok installed python3-rich python3-rich 13.7.1-1 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.18.6+ds-3 install ok installed python3-ruamel.yaml.clib:amd64 python3-ruamel.yaml.clib 0.2.8+ds-1 install ok installed python3-sbml5 python3-sbml5 5.20.2+dfsg-3 install ok installed python3-simplejson python3-simplejson 3.19.2-1+b1 install ok installed python3-six python3-six 1.16.0-6 install ok installed python3-sniffio python3-sniffio 1.3.0-2 install ok installed python3-swiglpk python3-swiglpk 5.0.10-1 install ok installed python3-sympy python3-sympy 1.12-7 install ok installed python3-tabulate python3-tabulate 0.8.10-1 install ok installed python3-typing-extensions python3-typing-extensions 4.10.0-1 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-zipp python3-zipp 1.0.0-6 install ok installed python3.11 python3.11 3.11.9-1 install ok installed python3.11-minimal python3.11-minimal 3.11.9-1 install ok installed readline-common readline-common 8.2-4 install ok installed sed sed 4.9-2 install ok installed swig swig 4.2.1-1 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-8 install ok installed util-linux-extra util-linux-extra 2.40-8 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 2m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', 'remove', 'ca-certificates', 'libamd2:amd64', 'libamd3:amd64', 'libblas3:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libxml2:amd64', 'media-types', 'netbase', 'openssl', 'python-cobra-data', 'python3', 'python3-anyio', 'python3-appdirs', 'python3-certifi', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-depinfo', 'python3-diskcache', 'python3-future', 'python3-h11', 'python3-httpcore', 'python3-httpx', 'python3-idna', 'python3-importlib-resources', 'python3-lib2to3', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-optlang', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pygments', 'python3-rfc3986', 'python3-rich', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-sbml5', 'python3-simplejson', 'python3-six', 'python3-sniffio', 'python3-swiglpk', 'python3-sympy', 'python3-tabulate', 'python3-typing-extensions', 'python3-tz', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'readline-common', 'swig', 'python3-cobra'] 2m9.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates libamd2 libamd3 libblas3 libcolamd2 libcolamd3 libexpat1 libgfortran5 libglpk40 libgomp1 libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libltdl7 libncursesw6 libnsl2 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libquadmath0 libreadline8t64 libsqlite3-0 libsuitesparseconfig5 libsuitesparseconfig7 libtirpc-common libtirpc3t64 libxml2 media-types netbase openssl python-cobra-data python3 python3-anyio python3-appdirs python3-certifi python3-click python3-cobra python3-colorama python3-dateutil python3-depinfo python3-diskcache python3-future python3-h11 python3-httpcore python3-httpx python3-idna python3-importlib-resources python3-lib2to3 python3-markdown-it python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-optlang python3-pandas python3-pandas-lib python3-pkg-resources python3-pydantic python3-pygments python3-rfc3986 python3-rich python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-simplejson python3-six python3-sniffio python3-swiglpk python3-sympy python3-tabulate python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-minimal readline-common swig 0 upgraded, 0 newly installed, 83 to remove and 0 not upgraded. After this operation, 294 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14408 files and directories currently installed.) Removing python3-cobra (0.29.0-2) ... Removing python3-httpx (0.27.0-1) ... Removing python3-httpcore (1.0.4-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libamd2:amd64 (1:5.12.0+dfsg-2) ... Removing python3-optlang (1.8.1-1) ... Removing python3-swiglpk (5.0.10-1) ... Removing libglpk40:amd64 (5.0-1+b1) ... Removing libamd3:amd64 (1:7.7.0+dfsg-2) ... Removing python3-pandas (2.1.4+dfsg-7) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-7) ... Removing python3-numpy (1:1.26.4+ds-8) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing libcolamd2:amd64 (1:5.12.0+dfsg-2) ... Removing libcolamd3:amd64 (1:7.7.0+dfsg-2) ... Removing python3-simplejson (3.19.2-1+b1) ... Removing python3-sympy (1.12-7) ... Removing python3-rich (13.7.1-1) ... Removing python3-ruamel.yaml (0.18.6+ds-3) ... Removing python3-ruamel.yaml.clib:amd64 (0.2.8+ds-1) ... Removing python3-dateutil (2.9.0-2) ... Removing python3-six (1.16.0-6) ... Removing python3-depinfo (2.2.0-2) ... Removing python3-sbml5 (5.20.2+dfsg-3) ... Removing libpython3.11t64:amd64 (3.11.9-1) ... Removing libgfortran5:amd64 (14-20240330-1) ... Removing libsuitesparseconfig7:amd64 (1:7.7.0+dfsg-2) ... Removing libgomp1:amd64 (14-20240330-1) ... Removing libnsl2:amd64 (1.3.0-3+b2) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing libkrb5-3:amd64 (1.20.1-6+b1) ... Removing libk5crypto3:amd64 (1.20.1-6+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-6+b1) ... Removing libltdl7:amd64 (2.4.7-7+b1) ... Removing libquadmath0:amd64 (14-20240330-1) ... Removing libsuitesparseconfig5:amd64 (1:5.12.0+dfsg-2) ... Removing libtirpc-common (1.3.4+ds-1.3) ... Removing openssl (3.2.1-3) ... Removing python-cobra-data (0.29.0-2) ... Removing python3-anyio (4.3.0-1) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-click (8.1.7-1) ... Removing python3-colorama (0.4.6-4) ... Removing python3-diskcache (5.6.3-1) ... Removing python3-future (0.18.2-6) ... Removing python3-h11 (0.14.0-1) ... Removing python3-rfc3986 (2.0.0-2) ... Removing python3-idna (3.6-2) ... Removing python3-importlib-resources (6.0.1-1) ... Removing python3-lib2to3 (3.12.3-1) ... Removing python3-markdown-it (3.0.0-2) ... Removing python3-mdurl (0.1.2-1) ... Removing python3-zipp (1.0.0-6) ... Removing python3-more-itertools (10.2.0-1) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-pygments (2.17.2+dfsg-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-pydantic (1.10.14-1) ... Removing python3-sniffio (1.3.0-2) ... Removing python3-tabulate (0.8.10-1) ... Removing python3-typing-extensions (4.10.0-1) ... Removing python3-tz (2024.1-2) ... Removing swig (4.2.1-1) ... Removing python3 (3.11.8-1) ... Removing python3.11 (3.11.9-1) ... Removing python3-minimal (3.11.8-1) ... Removing python3.11-minimal (3.11.9-1) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3-stdlib:amd64 (3.11.8-1) ... Removing libpython3.11-stdlib:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240414-1) ... Removing libpython3.11-minimal:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.45.3-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-4) ... Processing triggers for libc-bin (2.37-18) ... 2m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', 'remove', 'ca-certificates', 'libamd2:amd64', 'libamd3:amd64', 'libblas3:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libxml2:amd64', 'media-types', 'netbase', 'openssl', 'python-cobra-data', 'python3', 'python3-anyio', 'python3-appdirs', 'python3-certifi', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-depinfo', 'python3-diskcache', 'python3-future', 'python3-h11', 'python3-httpcore', 'python3-httpx', 'python3-idna', 'python3-importlib-resources', 'python3-lib2to3', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-optlang', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pygments', 'python3-rfc3986', 'python3-rich', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-sbml5', 'python3-simplejson', 'python3-six', 'python3-sniffio', 'python3-swiglpk', 'python3-sympy', 'python3-tabulate', 'python3-typing-extensions', 'python3-tz', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'readline-common', 'swig', 'python3-cobra'] 2m9.6s INFO: Running scripts post_remove 2m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_remove_exceptions'] 2m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_remove_exceptions'] 2m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg', '--purge', 'ca-certificates', 'libamd2:amd64', 'libamd3:amd64', 'libblas3:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libxml2:amd64', 'media-types', 'netbase', 'openssl', 'python-cobra-data', 'python3', 'python3-anyio', 'python3-appdirs', 'python3-certifi', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-depinfo', 'python3-diskcache', 'python3-future', 'python3-h11', 'python3-httpcore', 'python3-httpx', 'python3-idna', 'python3-importlib-resources', 'python3-lib2to3', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-optlang', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pygments', 'python3-rfc3986', 'python3-rich', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-sbml5', 'python3-simplejson', 'python3-six', 'python3-sniffio', 'python3-swiglpk', 'python3-sympy', 'python3-tabulate', 'python3-typing-extensions', 'python3-tz', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'readline-common', 'swig'] 2m9.8s DUMP: (Reading database ... 5358 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libamd2 which isn't installed dpkg: warning: ignoring request to remove libamd3 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libcolamd2 which isn't installed dpkg: warning: ignoring request to remove libcolamd3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libglpk40 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.9-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11t64 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-4) ... dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig5 which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig7 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.3) ... Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.3) ... dpkg: warning: ignoring request to remove libxml2 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.2.1-3) ... dpkg: warning: ignoring request to remove python-cobra-data which isn't installed Purging configuration files for python3 (3.11.8-1) ... dpkg: warning: ignoring request to remove python3-anyio which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-depinfo which isn't installed dpkg: warning: ignoring request to remove python3-diskcache which isn't installed dpkg: warning: ignoring request to remove python3-future which isn't installed dpkg: warning: ignoring request to remove python3-h11 which isn't installed dpkg: warning: ignoring request to remove python3-httpcore which isn't installed dpkg: warning: ignoring request to remove python3-httpx which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-importlib-resources which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-markdown-it which isn't installed dpkg: warning: ignoring request to remove python3-mdurl which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-optlang which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pydantic which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-rfc3986 which isn't installed dpkg: warning: ignoring request to remove python3-rich which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml.clib which isn't installed dpkg: warning: ignoring request to remove python3-sbml5 which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-sniffio which isn't installed dpkg: warning: ignoring request to remove python3-swiglpk which isn't installed Purging configuration files for python3-sympy (1.12-7) ... dpkg: warning: ignoring request to remove python3-tabulate which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.9-1) ... Purging configuration files for readline-common (8.2-4) ... dpkg: warning: ignoring request to remove swig which isn't installed 2m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg', '--purge', 'ca-certificates', 'libamd2:amd64', 'libamd3:amd64', 'libblas3:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libxml2:amd64', 'media-types', 'netbase', 'openssl', 'python-cobra-data', 'python3', 'python3-anyio', 'python3-appdirs', 'python3-certifi', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-depinfo', 'python3-diskcache', 'python3-future', 'python3-h11', 'python3-httpcore', 'python3-httpx', 'python3-idna', 'python3-importlib-resources', 'python3-lib2to3', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-optlang', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pygments', 'python3-rfc3986', 'python3-rich', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-sbml5', 'python3-simplejson', 'python3-six', 'python3-sniffio', 'python3-swiglpk', 'python3-sympy', 'python3-tabulate', 'python3-typing-extensions', 'python3-tz', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'readline-common', 'swig'] 2m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg', '--purge', 'python3-cobra'] 2m9.8s DUMP: dpkg: warning: ignoring request to remove python3-cobra which isn't installed 2m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg', '--purge', 'python3-cobra'] 2m9.8s INFO: Running scripts post_purge 2m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_purge_exceptions'] 2m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_purge_exceptions'] 2m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg', '--purge', '--pending'] 2m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg', '--purge', '--pending'] 2m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg', '--remove', '--pending'] 2m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg', '--remove', '--pending'] 2m9.9s INFO: Running scripts post_test 2m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_test_exceptions'] 2m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'tmp/scripts/post_test_exceptions'] 2m9.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 2m10.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 2m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg-divert', '--list'] 2m10.3s DUMP: diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra 2m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'dpkg-divert', '--list'] 2m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', 'clean'] 2m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg', 'apt-get', 'clean'] 2m10.4s DEBUG: Recording chroot state 2m11.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/shm'] 2m11.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/shm'] 2m11.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/console'] 2m11.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/console'] 2m11.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/ptmx'] 2m11.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/ptmx'] 2m11.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/pts'] 2m11.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/dev/pts'] 2m11.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/proc'] 2m11.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg/proc'] 2m11.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 2m11.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmplmv1bmzg'] 2m11.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmplmv1bmzg 2m11.8s INFO: PASS: Upgrading between Debian distributions. 2m11.8s INFO: PASS: All tests. 2m11.8s INFO: piuparts run ends. ret=0 End: 2024-04-28 09:50:30 GMT