Start: 2025-03-22 15:42:47 GMT [testing] Package: python3-dipy Source: dipy Version: 1.10.0-2 Installed-Size: 10624 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-h5py (>= 3.1.0), python3-nibabel, python3-numpy, python3-packaging, python3-scipy, python3-tqdm, python3-trx-python, python3:any, python3-dipy-lib (>= 1.10.0-2) Recommends: python3-matplotlib, python3-vtk9, python3-tables, python3-sklearn, python3-pandas Suggests: python3-boto3, python-dipy-doc Description: Python library for the analysis of diffusion MRI datasets Homepage: https://dipy.org Description-md5: e620bab38cf0e2e257daf48cb72578d2 Section: python Priority: optional Filename: pool/main/d/dipy/python3-dipy_1.10.0-2_all.deb Size: 3559216 MD5sum: 21d3bae2983da54efbe400cbdf4932b6 SHA256: 90982e5d274a1bfdcd42902e483b45816fdb6e484a57884c2bc12b5d0396a704 [sid] Package: python3-dipy Source: dipy Version: 1.11.0-2 Installed-Size: 10809 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-h5py (>= 3.1.0), python3-nibabel, python3-numpy, python3-packaging, python3-scipy, python3-tqdm, python3-trx-python, python3:any, python3-dipy-lib (>= 1.11.0-2) Recommends: python3-matplotlib, python3-vtk9, python3-tables, python3-sklearn, python3-pandas Suggests: python3-boto3, python-dipy-doc Description: Python library for the analysis of diffusion MRI datasets Homepage: https://dipy.org Description-md5: e620bab38cf0e2e257daf48cb72578d2 Section: python Priority: optional Filename: pool/main/d/dipy/python3-dipy_1.11.0-2_all.deb Size: 3590280 MD5sum: 0294c358ad51205c28d5b58d733f4756 SHA256: 18457d195b99555e065afe241483d60c4efdb1409a2f2704899bebd60e815d3e Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-dipy=1.11.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-dipy=1.11.0-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpojp9lt74 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpojp9lt74 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpojp9lt74/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', 'update'] 0m3.0s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [175 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9564 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6412 kB] Fetched 16.2 MB in 1s (11.2 MB/s) Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', 'update'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', '-yf', 'dist-upgrade'] 0m4.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: diffutils libzstd1 login.defs passwd 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2103 kB of archives. After this operation, 25.6 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 diffutils amd64 1:3.10-3 [385 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libzstd1 amd64 1.5.7+dfsg-1 [304 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.17.3-2 [186 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.17.3-2 [1228 kB] Fetched 2103 kB in 0s (37.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-3_amd64.deb ... Unpacking diffutils (1:3.10-3) over (1:3.10-2) ... Setting up diffutils (1:3.10-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.7+dfsg-1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... Setting up libzstd1:amd64 (1.5.7+dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.17.3-2_all.deb ... Unpacking login.defs (1:4.17.3-2) over (1:4.17.3-1) ... Preparing to unpack .../passwd_1%3a4.17.3-2_amd64.deb ... Unpacking passwd (1:4.17.3-2) over (1:4.17.3-1) ... Setting up login.defs (1:4.17.3-2) ... Setting up passwd (1:4.17.3-2) ... Processing triggers for libc-bin (2.41-6) ... 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', '-yf', 'dist-upgrade'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.3s DUMP: 73c33db602cd840ca9f6603a4da85eb9 - 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.3s INFO: Running scripts post_setup 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_dummy_users'] 0m6.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_dummy_users'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_forbid_home'] 0m6.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_forbid_home'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_minimize'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_minimize'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_zz_backports'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_setup_zz_backports'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.3s DUMP: install ok installed apt apt 2.9.33 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1+b1 install ok installed bsdutils bsdutils 1:2.40.4-5 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-3 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-17 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.33 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.40.4-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-17 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.6.4-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2+b1 install ok installed libselinux1:amd64 libselinux1 3.8-4 install ok installed libsemanage-common libsemanage-common 3.8-1 install ok installed libsemanage2:amd64 libsemanage2 3.8-1+b1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-17 install ok installed libsystemd0:amd64 libsystemd0 257.4-3 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.4-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.4-5 install ok installed login.defs login.defs 1:4.17.3-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.3-2 install ok installed perl-base perl-base 5.40.1-2 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m6.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m6.6s INFO: Running scripts is_testable 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/is_testable_uninstallable'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/is_testable_uninstallable'] 0m6.6s INFO: Running scripts pre_test 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_test_exceptions'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_test_exceptions'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_test_root_password'] 0m6.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_test_root_password'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'show', '--no-all-versions', 'python3-dipy'] 0m6.9s DUMP: Package: python3-dipy Source: dipy Version: 1.10.0-2 Installed-Size: 10624 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-h5py (>= 3.1.0), python3-nibabel, python3-numpy, python3-packaging, python3-scipy, python3-tqdm, python3-trx-python, python3:any, python3-dipy-lib (>= 1.10.0-2) Recommends: python3-matplotlib, python3-vtk9, python3-tables, python3-sklearn, python3-pandas Suggests: python3-boto3, python-dipy-doc Description-en: Python library for the analysis of diffusion MRI datasets DIPY is a software project for computational neuroanatomy. It focuses on diffusion magnetic resonance imaging (dMRI) analysis and tractography but also contains implementations of other computational imaging methods such as denoising and registration that are applicable to the greater medical imaging and image processing communities. Additionally, DIPY is an international project which brings together scientists across labs and countries to share their state-of-the-art code and expertise in the same codebase, accelerating scientific research in medical imaging. . Here are some of the highlights: - Reconstruction algorithms: CSD, DSI, GQI, DTI, DKI, QBI, SHORE and MAPMRI - Fiber tracking algorithms: deterministic and probabilistic - Native linear and nonlinear registration of images - Fast operations on streamlines (selection, resampling, registration) - Tractography segmentation and clustering - Many image operations, e.g., reslicing or denoising with NLMEANS - Estimation of distances/correspondences between streamlines and connectivity matrices - Interactive visualization of streamlines in the space of images . This package contains the Python 3 version. Description-md5: e620bab38cf0e2e257daf48cb72578d2 Homepage: https://dipy.org Section: python Priority: optional Filename: pool/main/d/dipy/python3-dipy_1.10.0-2_all.deb Size: 3559216 MD5sum: 21d3bae2983da54efbe400cbdf4932b6 SHA256: 90982e5d274a1bfdcd42902e483b45816fdb6e484a57884c2bc12b5d0396a704 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'show', '--no-all-versions', 'python3-dipy'] 0m6.9s INFO: apt-cache knows about the following packages: python3-dipy 0m6.9s INFO: Running scripts pre_install 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_database-server'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_database-server'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_exceptions'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_exceptions'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_extras'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_extras'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy'] 0m7.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy', 'python3-dipy'] 0m7.1s DUMP: python3-dipy: Installed: (none) Candidate: 1.10.0-2 Version table: 1.10.0-2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy', 'python3-dipy'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', '-y', 'install', 'python3-dipy'] 0m24.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libaec0 libblas3 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgfortran5 libgnutls30t64 libgomp1 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap2 liblzf1 libncursesw6 libnghttp2-14 libnghttp3-9 libp11-kit0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libtasn1-6 libunistring5 media-types netbase python3 python3-autocommand python3-decorator python3-deepdiff python3-dipy-lib python3-h5py python3-h5py-serial python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jsonpickle python3-minimal python3-more-itertools python3-nibabel python3-numpy python3-numpy-dev python3-orderly-set python3-packaging python3-pkg-resources python3-scipy python3-setuptools python3-setuptools-scm python3-tqdm python3-trx-python python3-typeguard python3-typing-extensions python3-zipp python3.13 python3.13-minimal readline-common Suggested packages: gnutls-bin krb5-doc krb5-user python3-doc python3-tk python3-venv python3-boto3 python-dipy-doc python-h5py-doc python-jsonpickle-doc python3-simplejson python-nibabel-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-scipy-doc python-setuptools-doc python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: ca-certificates krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-clevercsv python3-matplotlib python3-vtk9 python3-tables python3-sklearn python3-pandas python3-pydicom python3-fuse g++ | c++-compiler python3-pil python3-pooch The following NEW packages will be installed: libaec0 libblas3 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgfortran5 libgnutls30t64 libgomp1 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap2 liblzf1 libncursesw6 libnghttp2-14 libnghttp3-9 libp11-kit0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libtasn1-6 libunistring5 media-types netbase python3 python3-autocommand python3-decorator python3-deepdiff python3-dipy python3-dipy-lib python3-h5py python3-h5py-serial python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jsonpickle python3-minimal python3-more-itertools python3-nibabel python3-numpy python3-numpy-dev python3-orderly-set python3-packaging python3-pkg-resources python3-scipy python3-setuptools python3-setuptools-scm python3-tqdm python3-trx-python python3-typeguard python3-typing-extensions python3-zipp python3.13 python3.13-minimal readline-common 0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded. 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Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../20-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../21-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../22-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../23-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../24-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../25-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../26-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../27-libcurl4t64_8.13.0~rc2-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.13.0~rc2-1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../28-libgomp1_14.2.0-17_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-17) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../29-libsz2_1.1.3-1+b1_amd64.deb ... Unpacking libsz2:amd64 (1.1.3-1+b1) ... Selecting previously unselected package libhdf5-310:amd64. Preparing to unpack .../30-libhdf5-310_1.14.5+repack-3_amd64.deb ... Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-310:amd64. 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Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../49-python3-jaraco.context_6.0.1-1_all.deb ... Unpacking python3-jaraco.context (6.0.1-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../50-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../51-python3-pkg-resources_75.8.0-1_all.deb ... Unpacking python3-pkg-resources (75.8.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../52-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../53-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. 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Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up libgomp1:amd64 (14.2.0-17) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-4+b3) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libgfortran5:amd64 (14.2.0-17) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up readline-common (8.2-6) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... Setting up libpython3-stdlib:amd64 (3.13.2-2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up python3.13 (3.13.2-2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.2-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-orderly-set (5.3.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.3+ds-5) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-jsonpickle (4.0.2+dfsg-1) ... Setting up python3-deepdiff (8.1.1-3) ... Setting up python3-scipy (1.14.1-4+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.13.0~rc2-1) ... Setting up python3-tqdm (4.67.1-2) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-dipy-lib:amd64 (1.10.0-2+b2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-nibabel (5.3.2-2) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-h5py-serial (3.13.0-1+b1) ... Setting up python3-setuptools-scm (8.2.0-1) ... Setting up python3-h5py (3.13.0-1) ... Setting up python3-trx-python (0.3-1) ... Setting up python3-dipy (1.10.0-2) ... Processing triggers for libc-bin (2.41-6) ... 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', '-y', 'install', 'python3-dipy'] 0m24.7s INFO: Running scripts post_install 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_install_exceptions'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_install_exceptions'] 0m24.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m25.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m25.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpojp9lt74 to sid 0m25.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m25.5s INFO: Running scripts pre_distupgrade 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_distupgrade_exceptions'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_distupgrade_exceptions'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', 'update'] 0m28.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7386 kB] Fetched 17.7 MB in 2s (9366 kB/s) Reading package lists... 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', 'update'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', '-yf', 'dist-upgrade'] 0m36.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: liblbfgsb0 Use 'sudo apt autoremove' to remove it. The following packages will be upgraded: apt gcc-14-base libapt-pkg7.0 libcap2 libcom-err2 libcurl4t64 libexpat1 libgcc-s1 libgfortran5 libgomp1 libseccomp2 libselinux1 libsemanage-common libsemanage2 libstdc++6 python3-dipy python3-dipy-lib python3-scipy python3-tqdm 19 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 27.6 MB of archives. After this operation, 3966 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 2.9.34 [1111 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.6.0-2 [51.7 kB] Get:8 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.34 [1449 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.75-3 [27.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.13.0~rc2-2 [380 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.0-1 [107 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.8.1-1 [7812 B] Get:15 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.8.1-1 [95.3 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.15.2-6 [16.3 MB] Get:17 http://deb.debian.org/debian sid/main amd64 python3-tqdm all 4.67.1-3 [90.3 kB] Get:18 http://deb.debian.org/debian sid/main amd64 python3-dipy-lib amd64 1.11.0-2 [2469 kB] Get:19 http://deb.debian.org/debian sid/main amd64 python3-dipy all 1.11.0-2 [3590 kB] Fetched 27.6 MB in 0s (77.0 MB/s) (Reading database ... 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Setting up python3-dipy-lib:amd64 (1.11.0-2) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up libsemanage2:amd64 (3.8.1-1) ... Setting up python3-scipy (1.15.2-6) ... Setting up python3-dipy (1.11.0-2) ... Processing triggers for libc-bin (2.41-6) ... 0m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', '-yf', 'dist-upgrade'] 0m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m37.9s DUMP: da48ec491ca5d9a56f53f7dd9d46cafb - 0m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'show', '--no-all-versions', 'python3-dipy'] 0m38.1s DUMP: Package: python3-dipy Source: dipy Version: 1.11.0-2 Installed-Size: 10809 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-h5py (>= 3.1.0), python3-nibabel, python3-numpy, python3-packaging, python3-scipy, python3-tqdm, python3-trx-python, python3:any, python3-dipy-lib (>= 1.11.0-2) Recommends: python3-matplotlib, python3-vtk9, python3-tables, python3-sklearn, python3-pandas Suggests: python3-boto3, python-dipy-doc Description-en: Python library for the analysis of diffusion MRI datasets DIPY is a software project for computational neuroanatomy. It focuses on diffusion magnetic resonance imaging (dMRI) analysis and tractography but also contains implementations of other computational imaging methods such as denoising and registration that are applicable to the greater medical imaging and image processing communities. Additionally, DIPY is an international project which brings together scientists across labs and countries to share their state-of-the-art code and expertise in the same codebase, accelerating scientific research in medical imaging. . Here are some of the highlights: - Reconstruction algorithms: CSD, DSI, GQI, DTI, DKI, QBI, SHORE and MAPMRI - Fiber tracking algorithms: deterministic and probabilistic - Native linear and nonlinear registration of images - Fast operations on streamlines (selection, resampling, registration) - Tractography segmentation and clustering - Many image operations, e.g., reslicing or denoising with NLMEANS - Estimation of distances/correspondences between streamlines and connectivity matrices - Interactive visualization of streamlines in the space of images . This package contains the Python 3 version. Description-md5: e620bab38cf0e2e257daf48cb72578d2 Homepage: https://dipy.org Section: python Priority: optional Filename: pool/main/d/dipy/python3-dipy_1.11.0-2_all.deb Size: 3590280 MD5sum: 0294c358ad51205c28d5b58d733f4756 SHA256: 18457d195b99555e065afe241483d60c4efdb1409a2f2704899bebd60e815d3e 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'show', '--no-all-versions', 'python3-dipy'] 0m38.1s INFO: apt-cache knows about the following packages: python3-dipy 0m38.1s INFO: Running scripts pre_install 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_database-server'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_database-server'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_exceptions'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_exceptions'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_extras'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_extras'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy'] 0m38.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy', 'python3-dipy'] 0m38.2s DUMP: python3-dipy: Installed: 1.11.0-2 Candidate: 1.11.0-2 Version table: *** 1.11.0-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy', 'python3-dipy'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', '-y', 'install', 'python3-dipy'] 0m38.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-dipy is already the newest version (1.11.0-2). The following package was automatically installed and is no longer required: liblbfgsb0 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', '-y', 'install', 'python3-dipy'] 0m38.8s INFO: Running scripts post_install 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_install_exceptions'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_install_exceptions'] 0m38.8s INFO: Running scripts post_distupgrade 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_distupgrade_exceptions'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_distupgrade_exceptions'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_distupgrade_zz_backports'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_distupgrade_zz_backports'] 0m38.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m39.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m39.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m40.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m40.9s INFO: Running scripts pre_install 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_database-server'] 0m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_database-server'] 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_exceptions'] 0m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_exceptions'] 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_extras'] 0m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_extras'] 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture'] 0m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture'] 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy'] 0m41.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m41.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy'] 0m41.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy', 'python3-dipy'] 0m41.1s DUMP: python3-dipy: Installed: 1.11.0-2 Candidate: 1.11.0-2 Version table: *** 1.11.0-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-cache', 'policy', 'python3-dipy'] 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', '-y', 'install', 'python3-dipy=1.11.0-2'] 0m41.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-dipy is already the newest version (1.11.0-2). The following package was automatically installed and is no longer required: liblbfgsb0 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', '-y', 'install', 'python3-dipy=1.11.0-2'] 0m41.8s INFO: Running scripts post_install 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_install_exceptions'] 0m41.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_install_exceptions'] 0m41.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m42.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m43.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', '-ac', '--ignore-obsolete'] 0m44.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', '-ac', '--ignore-obsolete'] 0m44.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m44.4s DUMP: 0.15.6 0m44.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m44.4s INFO: Running adequate version 0.15.6 now. 0m44.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'python3-dipy'] 0m44.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'python3-dipy'] 0m44.9s INFO: Running scripts pre_remove 0m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_exceptions'] 0m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/pre_remove_exceptions'] 0m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m46.7s DUMP: install ok installed apt apt 2.9.34 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1+b1 install ok installed bsdutils bsdutils 1:2.40.4-5 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-3 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.34 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblas3:amd64 libblas3 3.12.1-2 install ok installed libblkid1:amd64 libblkid1 2.40.4-5 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-3 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.13.0~rc2-2 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libexpat1:amd64 libexpat1 2.7.0-1 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-19 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.5+repack-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblapack3:amd64 liblapack3 3.12.1-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b2 install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzf1:amd64 liblzf1 3.6-4+b3 install ok installed liblzma5:amd64 liblzma5 5.6.4-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-5 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.2-2 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.2-2 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.2-2 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.4-3 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.4-3 install ok installed libunistring5:amd64 libunistring5 1.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.4-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.4-5 install ok installed login.defs login.defs 1:4.17.3-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.40.4-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.3-2 install ok installed perl-base perl-base 5.40.1-2 install ok installed python3 python3 3.13.2-2 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-deepdiff python3-deepdiff 8.1.1-3 install ok installed python3-dipy python3-dipy 1.11.0-2 install ok installed python3-dipy-lib:amd64 python3-dipy-lib 1.11.0-2 install ok installed python3-h5py python3-h5py 3.13.0-1 install ok installed python3-h5py-serial python3-h5py-serial 3.13.0-1+b1 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.1-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jaraco.text python3-jaraco.text 4.0.0-1 install ok installed python3-jsonpickle python3-jsonpickle 4.0.2+dfsg-1 install ok installed python3-minimal python3-minimal 3.13.2-2 install ok installed python3-more-itertools python3-more-itertools 10.6.0-1 install ok installed python3-nibabel python3-nibabel 5.3.2-2 install ok installed python3-numpy python3-numpy 1:2.2.3+ds-5 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.3+ds-5 install ok installed python3-orderly-set python3-orderly-set 5.3.0-1 install ok installed python3-packaging python3-packaging 24.2-1 install ok installed python3-pkg-resources python3-pkg-resources 75.8.0-1 install ok installed python3-scipy python3-scipy 1.15.2-6 install ok installed python3-setuptools python3-setuptools 75.8.0-1 install ok installed python3-setuptools-scm python3-setuptools-scm 8.2.0-1 install ok installed python3-tqdm python3-tqdm 4.67.1-3 install ok installed python3-trx-python python3-trx-python 0.3-1 install ok installed python3-typeguard python3-typeguard 4.4.2-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-zipp python3-zipp 3.21.0-1 install ok installed python3.13 python3.13 3.13.2-2 install ok installed python3.13-minimal python3.13-minimal 3.13.2-2 install ok installed readline-common readline-common 8.2-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', 'remove', '--allow-remove-essential', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-autocommand', 'python3-decorator', 'python3-deepdiff', 'python3-dipy-lib:amd64', 'python3-h5py', 'python3-h5py-serial', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jsonpickle', 'python3-minimal', 'python3-more-itertools', 'python3-nibabel', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-orderly-set', 'python3-packaging', 'python3-pkg-resources', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-tqdm', 'python3-trx-python', 'python3-typeguard', 'python3-typing-extensions', 'python3-zipp', 'python3.13', 'python3.13-minimal', 'readline-common', 'python3-dipy'] 0m50.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libaec0 libblas3 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgfortran5 libgnutls30t64 libgomp1 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap2 liblzf1 libncursesw6 libnghttp2-14 libnghttp3-9 libp11-kit0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libtasn1-6 libunistring5 media-types netbase python3 python3-autocommand python3-decorator python3-deepdiff python3-dipy python3-dipy-lib python3-h5py python3-h5py-serial python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jsonpickle python3-minimal python3-more-itertools python3-nibabel python3-numpy python3-numpy-dev python3-orderly-set python3-packaging python3-pkg-resources python3-scipy python3-setuptools python3-setuptools-scm python3-tqdm python3-trx-python python3-typeguard python3-typing-extensions python3-zipp python3.13 python3.13-minimal readline-common 0 upgraded, 0 newly installed, 73 to remove and 0 not upgraded. After this operation, 210 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10677 files and directories currently installed.) Removing python3-dipy (1.11.0-2) ... Removing python3-h5py (3.13.0-1) ... Removing python3-h5py-serial (3.13.0-1+b1) ... Removing libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Removing libhdf5-310:amd64 (1.14.5+repack-3) ... Removing libsz2:amd64 (1.1.3-1+b1) ... Removing libaec0:amd64 (1.1.3-1+b1) ... Removing python3-trx-python (0.3-1) ... Removing python3-nibabel (5.3.2-2) ... Removing python3-scipy (1.15.2-6) ... Removing python3-deepdiff (8.1.1-3) ... Removing python3-dipy-lib:amd64 (1.11.0-2) ... Removing python3-numpy (1:2.2.3+ds-5) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Removing liblapack3:amd64 (3.12.1-2) ... Removing libblas3:amd64 (3.12.1-2) ... Removing libcurl4t64:amd64 (8.13.0~rc2-2) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libcom-err2:amd64 (1.47.2-1+b1) ... Removing python3-tqdm (4.67.1-3) ... Removing python3-setuptools-scm (8.2.0-1) ... Removing python3-setuptools (75.8.0-1) ... Removing python3-pkg-resources (75.8.0-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libgnutls30t64:amd64 (3.8.9-2) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libgfortran5:amd64 (14.2.0-19) ... Removing libgomp1:amd64 (14.2.0-19) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.8-2) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Removing libldap2:amd64 (2.6.9+dfsg-2) ... Removing liblzf1:amd64 (3.6-4+b3) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libnghttp3-9:amd64 (1.8.0-1) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libunistring5:amd64 (1.3-1) ... Removing python3-decorator (5.1.1-5) ... Removing python3-jsonpickle (4.0.2+dfsg-1) ... Removing python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... Removing python3-orderly-set (5.3.0-1) ... Removing python3-packaging (24.2-1) ... Removing python3-zipp (3.21.0-1) ... Removing python3-jaraco.text (4.0.0-1) ... Removing python3-jaraco.context (6.0.1-1) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.2-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.6.0-1) ... Removing python3-typing-extensions (4.12.2-2) ... Removing python3 (3.13.2-2) ... Removing python3-minimal (3.13.2-2) ... Removing python3.13 (3.13.2-2) ... Removing python3.13-minimal (3.13.2-2) ... Removing libexpat1:amd64 (2.7.0-1) ... Removing libpython3-stdlib:amd64 (3.13.2-2) ... Removing libpython3.13-stdlib:amd64 (3.13.2-2) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.4.7-1) ... Removing libncursesw6:amd64 (6.5+20250216-2) ... Removing libpython3.13-minimal:amd64 (3.13.2-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-2) ... Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.2-6) ... Processing triggers for libc-bin (2.41-6) ... 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', 'remove', '--allow-remove-essential', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-autocommand', 'python3-decorator', 'python3-deepdiff', 'python3-dipy-lib:amd64', 'python3-h5py', 'python3-h5py-serial', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jsonpickle', 'python3-minimal', 'python3-more-itertools', 'python3-nibabel', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-orderly-set', 'python3-packaging', 'python3-pkg-resources', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-tqdm', 'python3-trx-python', 'python3-typeguard', 'python3-typing-extensions', 'python3-zipp', 'python3.13', 'python3.13-minimal', 'readline-common', 'python3-dipy'] 0m50.7s INFO: Running scripts post_remove 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_remove_exceptions'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_remove_exceptions'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg', '--purge', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-autocommand', 'python3-decorator', 'python3-deepdiff', 'python3-dipy-lib:amd64', 'python3-h5py', 'python3-h5py-serial', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jsonpickle', 'python3-minimal', 'python3-more-itertools', 'python3-nibabel', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-orderly-set', 'python3-packaging', 'python3-pkg-resources', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-tqdm', 'python3-trx-python', 'python3-typeguard', 'python3-typing-extensions', 'python3-zipp', 'python3.13', 'python3.13-minimal', 'readline-common'] 0m50.7s DUMP: dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed (Reading database ... 4917 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libhdf5-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-310 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.2-2) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed Purging configuration files for media-types (13.0.0) ... Purging configuration files for netbase (6.5) ... Purging configuration files for python3 (3.13.2-2) ... dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-deepdiff which isn't installed dpkg: warning: ignoring request to remove python3-dipy-lib which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.text which isn't installed dpkg: warning: ignoring request to remove python3-jsonpickle which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-nibabel which isn't installed Purging configuration files for python3-numpy (1:2.2.3+ds-5) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-orderly-set which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-setuptools-scm which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-trx-python which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.2-2) ... Purging configuration files for readline-common (8.2-6) ... 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg', '--purge', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-autocommand', 'python3-decorator', 'python3-deepdiff', 'python3-dipy-lib:amd64', 'python3-h5py', 'python3-h5py-serial', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jsonpickle', 'python3-minimal', 'python3-more-itertools', 'python3-nibabel', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-orderly-set', 'python3-packaging', 'python3-pkg-resources', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-tqdm', 'python3-trx-python', 'python3-typeguard', 'python3-typing-extensions', 'python3-zipp', 'python3.13', 'python3.13-minimal', 'readline-common'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg', '--purge', 'python3-dipy'] 0m50.8s DUMP: dpkg: warning: ignoring request to remove python3-dipy which isn't installed 0m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg', '--purge', 'python3-dipy'] 0m50.8s INFO: Running scripts post_purge 0m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_purge_exceptions'] 0m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_purge_exceptions'] 0m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg', '--purge', '--pending'] 0m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg', '--purge', '--pending'] 0m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg', '--remove', '--pending'] 0m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg', '--remove', '--pending'] 0m50.8s INFO: Running scripts post_test 0m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_test_exceptions'] 0m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'tmp/scripts/post_test_exceptions'] 0m50.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m51.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg-divert', '--list'] 0m51.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'dpkg-divert', '--list'] 0m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', 'clean'] 0m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpojp9lt74', 'apt-get', 'clean'] 0m51.3s DEBUG: Recording chroot state 0m52.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/shm'] 0m52.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/shm'] 0m52.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/console'] 0m52.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/console'] 0m52.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/ptmx'] 0m52.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/ptmx'] 0m52.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/pts'] 0m52.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/dev/pts'] 0m52.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/proc'] 0m52.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpojp9lt74/proc'] 0m52.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m52.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpojp9lt74'] 0m52.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpojp9lt74 0m52.6s INFO: PASS: Upgrading between Debian distributions. 0m52.6s INFO: PASS: All tests. 0m52.6s INFO: piuparts run ends. ret=0 End: 2025-03-22 15:43:40 GMT