Start: 2026-10-09 03:14:27 GMT [testing] Package: python3-galaxy-tool-util Source: python-galaxy-tool-util Version: 26.0.1-1 Installed-Size: 2297 Maintainer: Debian Python Team Architecture: all Depends: python3-conda-package-streaming, python3-galaxy-tool-util-models, python3-galaxy-util, python3-lxml, python3-markupsafe, python3-packaging, python3-pydantic, python3-requests, python3-sortedcontainers, python3-typing-extensions, python3-yaml, python3:any, python3-galaxy-common Recommends: cwltool, python3-jinja2, python3-whoosh, python3-edam-ontology, python3-numpy, python3-pysam, python3-pil, python3-tifffile Description: Galaxy tool and tool dependency utilities Homepage: https://github.com/galaxyproject/galaxy Description-md5: abdfbc4ae9039caa42f0af5c75fd19c9 Section: python Priority: optional Filename: pool/main/p/python-galaxy-tool-util/python3-galaxy-tool-util_26.0.1-1_all.deb Size: 375712 MD5sum: f5712d942654e6a5cfedcdb73316d2c9 SHA256: d1f4b687320ba7fc31352aba00659f466a52840efcc273da1f54813aa5a69861 [sid] Package: python3-galaxy-tool-util Source: python-galaxy-tool-util Version: 26.1.1-1 Installed-Size: 2456 Maintainer: Debian Python Team Architecture: all Depends: python3-conda-package-streaming, python3-galaxy-tool-util-models (>= 26.1.1), python3-galaxy-util (>= 26.1.1), python3-jsonschema, python3-lxml, python3-markupsafe, python3-packaging, python3-pydantic, python3-requests, python3-sortedcontainers, python3-typing-extensions, python3-yaml, python3:any, python3-galaxy-common Recommends: cwltool, python3-jinja2, python3-whoosh, python3-edam-ontology, python3-numpy, python3-pysam, python3-pil, python3-tifffile Description: Galaxy tool and tool dependency utilities Homepage: https://github.com/galaxyproject/galaxy Description-md5: abdfbc4ae9039caa42f0af5c75fd19c9 Section: python Priority: optional Filename: pool/main/p/python-galaxy-tool-util/python3-galaxy-tool-util_26.1.1-1_all.deb Size: 406640 MD5sum: 232b52cb6cdcae225c11f51d3e61fe35 SHA256: f218aba2552c4b2fee77eb9c6723f3122794ee73a80e3edadf21bf42ae1e52db Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-galaxy-tool-util=26.1.1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-galaxy-tool-util=26.1.1-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.111+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.111-1 (2026-09-28) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpfynuqnd5 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpfynuqnd5 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/9', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/9', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpfynuqnd5/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', 'update'] 0m2.1s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6625 kB] Fetched 16.8 MB in 1s (16.3 MB/s) Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libmd0 libmount1 libpcre2-8-0 libsmartcols1 libssl3t64 libuuid1 login login.defs mount openssl-provider-legacy passwd tzdata util-linux 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7342 kB of archives. After this operation, 114 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.42.4-1 [34.5 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.42.4-1 [185 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.42.4-1 [232 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.42.4-1 [153 kB] Get:5 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.42.4-1 [1254 kB] Get:6 http://deb.debian.org/debian forky/main amd64 mount amd64 2.42.4-1 [172 kB] Get:7 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.42.4-1 [124 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libmd0 amd64 1.3.0-1 [45.4 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.48-3.1 [312 kB] Get:10 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.6.5-1 [329 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.6.5-1 [2621 kB] Get:12 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.42.4-1 [92.9 kB] Get:13 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.20.2-2 [223 kB] Get:14 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.20.2-2 [1300 kB] Get:15 http://deb.debian.org/debian forky/main amd64 tzdata all 2026e-1 [262 kB] Preconfiguring packages ... Fetched 7342 kB in 0s (90.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libuuid1_2.42.4-1_amd64.deb ... Unpacking libuuid1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libuuid1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libblkid1_2.42.4-1_amd64.deb ... Unpacking libblkid1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libblkid1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libmount1_2.42.4-1_amd64.deb ... Unpacking libmount1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libmount1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.42.4-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libsmartcols1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../util-linux_2.42.4-1_amd64.deb ... Unpacking util-linux (2.42.4-1) over (2.42.3-1) ... Setting up util-linux (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../mount_2.42.4-1_amd64.deb ... Unpacking mount (2.42.4-1) over (2.42.3-1) ... Preparing to unpack .../login_1%3a4.16.0-2+really2.42.4-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.42.4-1) over (1:4.16.0-2+really2.42.3-1) ... Preparing to unpack .../libmd0_1.3.0-1_amd64.deb ... Unpacking libmd0:amd64 (1.3.0-1) over (1.2.0-2) ... Setting up libmd0:amd64 (1.3.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.48-3.1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.48-3.1) over (10.48-3) ... Setting up libpcre2-8-0:amd64 (10.48-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.6.5-1_amd64.deb ... Unpacking openssl-provider-legacy (3.6.5-1) over (3.6.4-1) ... Setting up openssl-provider-legacy (3.6.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.6.5-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.6.5-1) over (3.6.4-1) ... Setting up libssl3t64:amd64 (3.6.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.42.4-1_amd64.deb ... Unpacking bsdutils (1:2.42.4-1) over (1:2.42.3-1) ... Preparing to unpack .../login.defs_1%3a4.20.2-2_all.deb ... Unpacking login.defs (1:4.20.2-2) over (1:4.19.3-2) ... Preparing to unpack .../passwd_1%3a4.20.2-2_amd64.deb ... Unpacking passwd (1:4.20.2-2) over (1:4.19.3-2) ... Preparing to unpack .../tzdata_2026e-1_all.deb ... Unpacking tzdata (2026e-1) over (2026c-1) ... Setting up bsdutils (1:2.42.4-1) ... Setting up login.defs (1:4.20.2-2) ... Installing new version of config file /etc/login.defs ... Setting up tzdata (2026e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 9 03:14:31 UTC 2026. Universal Time is now: Fri Oct 9 03:14:31 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up passwd (1:4.20.2-2) ... Setting up mount (2.42.4-1) ... Setting up login (1:4.16.0-2+really2.42.4-1) ... Processing triggers for libselinux1:amd64 (3.11-2.1) ... Processing triggers for libc-bin (2.43-6) ... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s DUMP: 0d8a7dd3286ad8838468738320676fe9 - 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s INFO: Running scripts post_setup 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_forbid_home'] 0m5.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_forbid_home'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_minimize'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_minimize'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_zz_backports'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_setup_zz_backports'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.5s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-6 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-6 install ok installed libc6:amd64 libc6 2.43-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.2-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.2-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m5.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m5.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m5.9s INFO: Running scripts is_testable 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/is_testable_uninstallable'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/is_testable_uninstallable'] 0m5.9s INFO: Running scripts pre_test 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_test_exceptions'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_test_exceptions'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_test_root_password'] 0m5.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_test_root_password'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'show', '--no-all-versions', 'python3-galaxy-tool-util'] 0m6.2s DUMP: Package: python3-galaxy-tool-util Source: python-galaxy-tool-util Version: 26.0.1-1 Installed-Size: 2297 Maintainer: Debian Python Team Architecture: all Depends: python3-conda-package-streaming, python3-galaxy-tool-util-models, python3-galaxy-util, python3-lxml, python3-markupsafe, python3-packaging, python3-pydantic, python3-requests, python3-sortedcontainers, python3-typing-extensions, python3-yaml, python3:any, python3-galaxy-common Recommends: cwltool, python3-jinja2, python3-whoosh, python3-edam-ontology, python3-numpy, python3-pysam, python3-pil, python3-tifffile Description-en: Galaxy tool and tool dependency utilities The Galaxy workflow platform "tool_util" module. . Used for tool metadata (bio.tools query / EDAM parsing), tool data tables, and tool dependency management & resolvers (with built-in Brew, Conda, Lmod, Dockstore, Environment Modules, and container support). . Includes a Galaxy Tool client: staging inputs, tool landing endpoints (forms with optional pre-populated parameters), Galaxy Tool XML formatter/linter and parser. Description-md5: abdfbc4ae9039caa42f0af5c75fd19c9 Homepage: https://github.com/galaxyproject/galaxy Section: python Priority: optional Filename: pool/main/p/python-galaxy-tool-util/python3-galaxy-tool-util_26.0.1-1_all.deb Size: 375712 MD5sum: f5712d942654e6a5cfedcdb73316d2c9 SHA256: d1f4b687320ba7fc31352aba00659f466a52840efcc273da1f54813aa5a69861 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'show', '--no-all-versions', 'python3-galaxy-tool-util'] 0m6.2s INFO: apt-cache knows about the following packages: python3-galaxy-tool-util 0m6.2s INFO: Running scripts pre_install 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_exceptions'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_exceptions'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_extras'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_extras'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy'] 0m6.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy', 'python3-galaxy-tool-util'] 0m6.3s DUMP: python3-galaxy-tool-util: Installed: (none) Candidate: 26.0.1-1 Version table: 26.0.1-1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy', 'python3-galaxy-tool-util'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', '-y', 'install', 'python3-galaxy-tool-util'] 0m20.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ca-certificates docutils-common libexpat1 libffi8 libgcrypt20 libgpg-error0 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 libxml2-16 libxslt1.1 libyaml-0-2 media-types netbase openssl python3 python3-annotated-types python3-bleach python3-boltons python3-certifi python3-chardet python3-charset-normalizer python3-conda-package-streaming python3-dnspython python3-docutils python3-email-validator python3-galaxy-common python3-galaxy-tool-util-models python3-galaxy-util python3-html5lib python3-idna python3-lxml python3-markupsafe python3-minimal python3-packaging python3-pydantic python3-pydantic-core python3-pyparsing python3-requests python3-roman-numerals python3-sortedcontainers python3-typing-extensions python3-typing-inspection python3-urllib3 python3-webencodings python3-yaml python3.14 python3.14-minimal readline-common sgml-base xml-core Suggested packages: rng-tools python3-doc python3-tk python3-venv python-bleach-doc python-charset-normalizer-doc python3-aioquic python3-trio docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python3-cheetah python3-pil python3-dictobj python3-fissix python3-jinja2 python3-genshi python-lxml-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-sortedcontainers-doc python-typing-extensions-doc python3-brotli python3.14-venv python3.14-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: libgpg-error-l10n libgpm2 python3-tinycss2 python3-cryptography python3-h2 python3-httpcore python3-httpx libpaper-utils python3-pil python3-pygments cwltool python3-jinja2 python3-whoosh python3-edam-ontology python3-numpy python3-pysam python3-tifffile python3-bs4 python3-cssselect The following NEW packages will be installed: ca-certificates docutils-common libexpat1 libffi8 libgcrypt20 libgpg-error0 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 libxml2-16 libxslt1.1 libyaml-0-2 media-types netbase openssl python3 python3-annotated-types python3-bleach python3-boltons python3-certifi python3-chardet python3-charset-normalizer python3-conda-package-streaming python3-dnspython python3-docutils python3-email-validator python3-galaxy-common python3-galaxy-tool-util python3-galaxy-tool-util-models python3-galaxy-util python3-html5lib python3-idna python3-lxml python3-markupsafe python3-minimal python3-packaging python3-pydantic python3-pydantic-core python3-pyparsing python3-requests python3-roman-numerals python3-sortedcontainers python3-typing-extensions python3-typing-inspection python3-urllib3 python3-webencodings python3-yaml python3.14 python3.14-minimal readline-common sgml-base xml-core 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 18.4 MB of archives. After this operation, 65.3 MB of additional disk space will be used. 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http://deb.debian.org/debian forky/main amd64 libpython3.14-stdlib amd64 3.14.8-1 [2367 kB] Get:13 http://deb.debian.org/debian forky/main amd64 python3.14 amd64 3.14.8-1 [874 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:15 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:16 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:17 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20260816 [134 kB] Get:18 http://deb.debian.org/debian forky/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:19 http://deb.debian.org/debian forky/main amd64 xml-core all 0.21 [19.0 kB] Get:20 http://deb.debian.org/debian forky/main amd64 docutils-common all 0.23+dfsg-2 [124 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.61-5 [93.1 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.12.4-2 [936 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libxslt1.1 amd64 1.1.45-0.1 [158 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:26 http://deb.debian.org/debian forky/main amd64 python3-annotated-types all 0.8.0-1 [18.7 kB] Get:27 http://deb.debian.org/debian forky/main amd64 python3-webencodings all 0.5.1-6 [11.2 kB] Get:28 http://deb.debian.org/debian forky/main amd64 python3-html5lib all 1.2-5 [87.4 kB] Get:29 http://deb.debian.org/debian forky/main amd64 python3-bleach all 6.3.0-1 [51.4 kB] Get:30 http://deb.debian.org/debian forky/main amd64 python3-boltons all 26.2.0-1 [155 kB] Get:31 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2026.7.22+ds-1 [9928 B] Get:32 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:33 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.7-2+b1 [190 kB] Get:34 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.20-1 [45.8 kB] Get:35 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.8.0-1 [125 kB] Get:36 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.34.2-1 [77.6 kB] Get:37 http://deb.debian.org/debian forky/main amd64 python3-conda-package-streaming all 0.13.0-2 [17.7 kB] Get:38 http://deb.debian.org/debian forky/main amd64 python3-dnspython all 2.8.0-6 [175 kB] Get:39 http://deb.debian.org/debian forky/main amd64 python3-roman-numerals all 4.1.0-1 [9196 B] Get:40 http://deb.debian.org/debian forky/main amd64 python3-docutils all 0.23+dfsg-2 [433 kB] Get:41 http://deb.debian.org/debian forky/main amd64 python3-email-validator all 2.3.0-1 [33.1 kB] Get:42 http://deb.debian.org/debian forky/main amd64 python3-galaxy-common all 0.0.3 [3200 B] Get:43 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:44 http://deb.debian.org/debian forky/main amd64 python3-pydantic-core amd64 2.46.5-2 [1610 kB] Get:45 http://deb.debian.org/debian forky/main amd64 python3-typing-inspection all 0.4.4-1 [14.1 kB] Get:46 http://deb.debian.org/debian forky/main amd64 python3-pydantic amd64 2.13.5-2 [389 kB] Get:47 http://deb.debian.org/debian forky/main amd64 python3-galaxy-tool-util-models all 26.0.0-1 [33.5 kB] Get:48 http://deb.debian.org/debian forky/main amd64 python3-packaging all 26.2-2 [84.2 kB] Get:49 http://deb.debian.org/debian forky/main amd64 python3-pyparsing all 3.3.2-2 [165 kB] Get:50 http://deb.debian.org/debian forky/main amd64 python3-yaml amd64 6.0.3-1+b1 [138 kB] Get:51 http://deb.debian.org/debian forky/main amd64 python3-galaxy-util all 26.0.1-1 [103 kB] Get:52 http://deb.debian.org/debian forky/main amd64 python3-lxml amd64 6.1.3-1 [1527 kB] Get:53 http://deb.debian.org/debian forky/main amd64 python3-markupsafe amd64 3.0.3-2+b1 [13.7 kB] Get:54 http://deb.debian.org/debian forky/main amd64 python3-sortedcontainers all 2.4.0-3 [31.3 kB] Get:55 http://deb.debian.org/debian forky/main amd64 python3-galaxy-tool-util all 26.0.1-1 [376 kB] Preconfiguring packages ... Fetched 18.4 MB in 0s (72.9 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4950 files and directories currently installed.) Preparing to unpack .../libexpat1_2.8.4-2_amd64.deb ... Unpacking libexpat1:amd64 (2.8.4-2) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.8-1_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.8-1) ... Selecting previously unselected package python3.14-minimal. Preparing to unpack .../python3.14-minimal_3.14.8-1_amd64.deb ... Unpacking python3.14-minimal (3.14.8-1) ... Setting up libpython3.14-minimal:amd64 (3.14.8-1) ... Setting up libexpat1:amd64 (2.8.4-2) ... Setting up python3.14-minimal (3.14.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5306 files and directories currently installed.) 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../08-libpython3.14-stdlib_3.14.8-1_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.8-1) ... Selecting previously unselected package python3.14. Preparing to unpack .../09-python3.14_3.14.8-1_amd64.deb ... Unpacking python3.14 (3.14.8-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../10-libpython3-stdlib_3.14.7-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3-minimal (3.14.7-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5836 files and directories currently installed.) Preparing to unpack .../00-python3_3.14.7-3_amd64.deb ... Unpacking python3 (3.14.7-3) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_3.6.5-1_amd64.deb ... Unpacking openssl (3.6.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20260816_all.deb ... Unpacking ca-certificates (20260816) ... 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Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../09-libxslt1.1_1.1.45-0.1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.45-0.1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../10-libyaml-0-2_0.2.5-2+b1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-2+b1) ... Selecting previously unselected package python3-annotated-types. Preparing to unpack .../11-python3-annotated-types_0.8.0-1_all.deb ... Unpacking python3-annotated-types (0.8.0-1) ... Selecting previously unselected package python3-webencodings. Preparing to unpack .../12-python3-webencodings_0.5.1-6_all.deb ... Unpacking python3-webencodings (0.5.1-6) ... Selecting previously unselected package python3-html5lib. Preparing to unpack .../13-python3-html5lib_1.2-5_all.deb ... Unpacking python3-html5lib (1.2-5) ... Selecting previously unselected package python3-bleach. Preparing to unpack .../14-python3-bleach_6.3.0-1_all.deb ... Unpacking python3-bleach (6.3.0-1) ... Selecting previously unselected package python3-boltons. Preparing to unpack .../15-python3-boltons_26.2.0-1_all.deb ... Unpacking python3-boltons (26.2.0-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../16-python3-certifi_2026.7.22+ds-1_all.deb ... Unpacking python3-certifi (2026.7.22+ds-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../17-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../18-python3-charset-normalizer_3.4.7-2+b1_amd64.deb ... Unpacking python3-charset-normalizer (3.4.7-2+b1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../19-python3-idna_3.20-1_all.deb ... Unpacking python3-idna (3.20-1) ... Selecting previously unselected package python3-urllib3. 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Selecting previously unselected package python3-lxml:amd64. Preparing to unpack .../37-python3-lxml_6.1.3-1_amd64.deb ... Unpacking python3-lxml:amd64 (6.1.3-1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../38-python3-markupsafe_3.0.3-2+b1_amd64.deb ... Unpacking python3-markupsafe (3.0.3-2+b1) ... Selecting previously unselected package python3-sortedcontainers. Preparing to unpack .../39-python3-sortedcontainers_2.4.0-3_all.deb ... Unpacking python3-sortedcontainers (2.4.0-3) ... Selecting previously unselected package python3-galaxy-tool-util. Preparing to unpack .../40-python3-galaxy-tool-util_26.0.1-1_all.deb ... Unpacking python3-galaxy-tool-util (26.0.1-1) ... Setting up media-types (14.0.0) ... Setting up libgpg-error0:amd64 (1.61-5) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libgcrypt20:amd64 (1.12.4-2) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libxslt1.1:amd64 (1.1.45-0.1) ... Setting up netbase (6.6) ... Setting up sgml-base (1.31+nmu1) ... Setting up openssl (3.6.5-1) ... Setting up readline-common (8.3-4) ... Setting up ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up libreadline8t64:amd64 (8.3-4) ... Setting up xml-core (0.21) ... Setting up libpython3.14-stdlib:amd64 (3.14.8-1) ... Setting up python3.14 (3.14.8-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3 (3.14.7-3) ... Setting up python3-sortedcontainers (2.4.0-3) ... Setting up python3-markupsafe (3.0.3-2+b1) ... Setting up python3-webencodings (0.5.1-6) ... Setting up python3-annotated-types (0.8.0-1) ... Setting up python3-galaxy-common (0.0.3) ... Setting up python3-packaging (26.2-2) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.3.2-2) ... Setting up python3-certifi (2026.7.22+ds-1) ... Setting up python3-idna (3.20-1) ... Setting up python3-typing-extensions (4.16.0-5) ... Setting up python3-html5lib (1.2-5) ... Setting up python3-urllib3 (2.8.0-1) ... Setting up python3-lxml:amd64 (6.1.3-1) ... Setting up python3-dnspython (2.8.0-6) ... Setting up python3-roman-numerals (4.1.0-1) ... Setting up python3-email-validator (2.3.0-1) ... Setting up python3-pydantic-core (2.46.5-2) ... Setting up python3-typing-inspection (0.4.4-1) ... Setting up python3-boltons (26.2.0-1) ... Setting up python3-charset-normalizer (3.4.7-2+b1) ... Setting up python3-yaml (6.0.3-1+b1) ... Setting up python3-bleach (6.3.0-1) ... Setting up python3-pydantic (2.13.5-2) ... Setting up python3-requests (2.34.2-1) ... Setting up python3-conda-package-streaming (0.13.0-2) ... Setting up python3-galaxy-tool-util-models (26.0.0-1) ... Processing triggers for libc-bin (2.43-6) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.23+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.23+dfsg-2) ... Setting up python3-galaxy-util (26.0.1-1) ... Setting up python3-galaxy-tool-util (26.0.1-1) ... Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', '-y', 'install', 'python3-galaxy-tool-util'] 0m20.9s INFO: Running scripts post_install 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_install_exceptions'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_install_exceptions'] 0m20.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m21.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m21.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpfynuqnd5 to sid 0m21.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m21.7s INFO: Running scripts pre_distupgrade 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_distupgrade_exceptions'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_distupgrade_exceptions'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', 'update'] 0m25.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7732 kB] Fetched 18.7 MB in 3s (6841 kB/s) Reading package lists... 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', 'update'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', '-yf', 'dist-upgrade'] 0m32.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: python3-attr python3-jsonschema python3-jsonschema-specifications python3-pydantic-extra-types python3-referencing python3-rpds-py The following packages will be upgraded: findutils libaudit-common libaudit1 libc-bin libc-gconv-modules-extra libc6 libexpat1 login.defs passwd python3-galaxy-tool-util python3-galaxy-tool-util-models python3-galaxy-util python3-packaging python3-pyparsing python3-urllib3 15 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. Need to get 7542 kB of archives. After this operation, 2468 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.11.0-3 [788 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.43-7 [621 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.9.0-1 [133 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:8 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.20.3-1 [224 kB] Get:9 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.20.3-1 [1298 kB] Get:10 http://deb.debian.org/debian sid/main amd64 python3-attr all 26.1.0-1 [72.2 kB] Get:11 http://deb.debian.org/debian sid/main amd64 python3-pydantic-extra-types all 2.11.2-3 [63.7 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3-galaxy-tool-util all 26.1.1-1 [407 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3-galaxy-tool-util-models all 26.1.1-1 [53.2 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3-packaging all 26.2-3 [84.3 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.3.3-1 [168 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-galaxy-util all 26.1.1-1 [106 kB] Get:17 http://deb.debian.org/debian sid/main amd64 python3-rpds-py amd64 0.30.0-2+b1 [249 kB] Get:18 http://deb.debian.org/debian sid/main amd64 python3-referencing all 0.37.0+~2025.1.1-3 [24.1 kB] Get:19 http://deb.debian.org/debian sid/main amd64 python3-jsonschema-specifications all 2025.9.1-1 [9112 B] Get:20 http://deb.debian.org/debian sid/main amd64 python3-jsonschema all 4.26.0-3 [74.6 kB] Get:21 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.8.0-2 [125 kB] Preconfiguring packages ... Fetched 7542 kB in 0s (75.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8118 files and directories currently installed.) Preparing to unpack .../findutils_4.11.0-3_amd64.deb ... Unpacking findutils (4.11.0-3) over (4.11.0-2) ... Setting up findutils (4.11.0-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8118 files and directories currently installed.) Preparing to unpack .../libc-bin_2.43-7_amd64.deb ... Unpacking libc-bin (2.43-7) over (2.43-6) ... Setting up libc-bin (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8118 files and directories currently installed.) Preparing to unpack .../libexpat1_2.9.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.9.0-1) over (2.8.4-2) ... Preparing to unpack .../libaudit-common_1%3a4.2.1-1_all.deb ... Unpacking libaudit-common (1:4.2.1-1) over (1:4.1.2-1) ... Setting up libaudit-common (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8118 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.2.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.2.1-1) over (1:4.1.2-1+b2) ... Setting up libaudit1:amd64 (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8117 files and directories currently installed.) Preparing to unpack .../00-login.defs_1%3a4.20.3-1_all.deb ... Unpacking login.defs (1:4.20.3-1) over (1:4.20.2-2) ... Preparing to unpack .../01-passwd_1%3a4.20.3-1_amd64.deb ... Unpacking passwd (1:4.20.3-1) over (1:4.20.2-2) ... Selecting previously unselected package python3-attr. Preparing to unpack .../02-python3-attr_26.1.0-1_all.deb ... Unpacking python3-attr (26.1.0-1) ... 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Unpacking python3-rpds-py (0.30.0-2+b1) ... Selecting previously unselected package python3-referencing. Preparing to unpack .../10-python3-referencing_0.37.0+~2025.1.1-3_all.deb ... Unpacking python3-referencing (0.37.0+~2025.1.1-3) ... Selecting previously unselected package python3-jsonschema-specifications. Preparing to unpack .../11-python3-jsonschema-specifications_2025.9.1-1_all.deb ... Unpacking python3-jsonschema-specifications (2025.9.1-1) ... Selecting previously unselected package python3-jsonschema. Preparing to unpack .../12-python3-jsonschema_4.26.0-3_all.deb ... Unpacking python3-jsonschema (4.26.0-3) ... Preparing to unpack .../13-python3-urllib3_2.8.0-2_all.deb ... Unpacking python3-urllib3 (2.8.0-2) over (2.8.0-1) ... Setting up libexpat1:amd64 (2.9.0-1) ... Setting up python3-attr (26.1.0-1) ... Setting up login.defs (1:4.20.3-1) ... Setting up python3-pydantic-extra-types (2.11.2-3) ... Setting up python3-packaging (26.2-3) ... Setting up python3-pyparsing (3.3.3-1) ... Setting up python3-urllib3 (2.8.0-2) ... Setting up python3-rpds-py (0.30.0-2+b1) ... Setting up passwd (1:4.20.3-1) ... Setting up python3-galaxy-util (26.1.1-1) ... Setting up python3-referencing (0.37.0+~2025.1.1-3) ... Setting up python3-galaxy-tool-util-models (26.1.1-1) ... Setting up python3-jsonschema-specifications (2025.9.1-1) ... Setting up python3-jsonschema (4.26.0-3) ... Setting up python3-galaxy-tool-util (26.1.1-1) ... Processing triggers for libc-bin (2.43-7) ... 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', '-yf', 'dist-upgrade'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m32.8s DUMP: 5f0d509d64ba2e57108a69dcff10c5bf - 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'show', '--no-all-versions', 'python3-galaxy-tool-util'] 0m33.1s DUMP: Package: python3-galaxy-tool-util Source: python-galaxy-tool-util Version: 26.1.1-1 Installed-Size: 2456 Maintainer: Debian Python Team Architecture: all Depends: python3-conda-package-streaming, python3-galaxy-tool-util-models (>= 26.1.1), python3-galaxy-util (>= 26.1.1), python3-jsonschema, python3-lxml, python3-markupsafe, python3-packaging, python3-pydantic, python3-requests, python3-sortedcontainers, python3-typing-extensions, python3-yaml, python3:any, python3-galaxy-common Recommends: cwltool, python3-jinja2, python3-whoosh, python3-edam-ontology, python3-numpy, python3-pysam, python3-pil, python3-tifffile Description-en: Galaxy tool and tool dependency utilities The Galaxy workflow platform "tool_util" module. . Used for tool metadata (bio.tools query / EDAM parsing), tool data tables, and tool dependency management & resolvers (with built-in Brew, Conda, Lmod, Dockstore, Environment Modules, and container support). . Includes a Galaxy Tool client: staging inputs, tool landing endpoints (forms with optional pre-populated parameters), Galaxy Tool XML formatter/linter and parser. Description-md5: abdfbc4ae9039caa42f0af5c75fd19c9 Homepage: https://github.com/galaxyproject/galaxy Section: python Priority: optional Filename: pool/main/p/python-galaxy-tool-util/python3-galaxy-tool-util_26.1.1-1_all.deb Size: 406640 MD5sum: 232b52cb6cdcae225c11f51d3e61fe35 SHA256: f218aba2552c4b2fee77eb9c6723f3122794ee73a80e3edadf21bf42ae1e52db 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'show', '--no-all-versions', 'python3-galaxy-tool-util'] 0m33.1s INFO: apt-cache knows about the following packages: python3-galaxy-tool-util 0m33.1s INFO: Running scripts pre_install 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_database-server'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_database-server'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_exceptions'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_exceptions'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_extras'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_extras'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy'] 0m33.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy', 'python3-galaxy-tool-util'] 0m33.2s DUMP: python3-galaxy-tool-util: Installed: 26.1.1-1 Candidate: 26.1.1-1 Version table: *** 26.1.1-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy', 'python3-galaxy-tool-util'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', '-y', 'install', 'python3-galaxy-tool-util'] 0m33.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-galaxy-tool-util is already the newest version (26.1.1-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', '-y', 'install', 'python3-galaxy-tool-util'] 0m33.8s INFO: Running scripts post_install 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_install_exceptions'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_install_exceptions'] 0m33.8s INFO: Running scripts post_distupgrade 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_distupgrade_exceptions'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_distupgrade_exceptions'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_distupgrade_zz_backports'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_distupgrade_zz_backports'] 0m33.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m34.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m34.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m34.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m34.8s INFO: Running scripts pre_install 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_database-server'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_database-server'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_exceptions'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_exceptions'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_extras'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_extras'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy'] 0m34.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy', 'python3-galaxy-tool-util'] 0m34.9s DUMP: python3-galaxy-tool-util: Installed: 26.1.1-1 Candidate: 26.1.1-1 Version table: *** 26.1.1-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-cache', 'policy', 'python3-galaxy-tool-util'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', '-y', 'install', 'python3-galaxy-tool-util=26.1.1-1'] 0m35.6s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-galaxy-tool-util is already the newest version (26.1.1-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', '-y', 'install', 'python3-galaxy-tool-util=26.1.1-1'] 0m35.6s INFO: Running scripts post_install 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_install_exceptions'] 0m35.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_install_exceptions'] 0m35.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m36.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m36.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', '-ac', '--ignore-obsolete'] 0m37.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', '-ac', '--ignore-obsolete'] 0m37.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m37.5s DUMP: 0.17.5+b5 0m37.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m37.5s INFO: Running adequate version 0.17.5+b5 now. 0m37.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'python3-galaxy-tool-util'] 0m37.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'python3-galaxy-tool-util'] 0m37.6s INFO: Running scripts pre_remove 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_exceptions'] 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/pre_remove_exceptions'] 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.4s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed ca-certificates ca-certificates 20260816 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed docutils-common docutils-common 0.23+dfsg-2 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libexpat1:amd64 libexpat1 2.9.0-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.12.4-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgpg-error0:amd64 libgpg-error0 1.61-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.8-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.8-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxml2-16:amd64 libxml2-16 2.15.4+dfsg-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.45-0.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed openssl openssl 3.6.5-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed python3 python3 3.14.7-3 install ok installed python3-annotated-types python3-annotated-types 0.8.0-1 install ok installed python3-attr python3-attr 26.1.0-1 install ok installed python3-bleach python3-bleach 6.3.0-1 install ok installed python3-boltons python3-boltons 26.2.0-1 install ok installed python3-certifi python3-certifi 2026.7.22+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.7-2+b1 install ok installed python3-conda-package-streaming python3-conda-package-streaming 0.13.0-2 install ok installed python3-dnspython python3-dnspython 2.8.0-6 install ok installed python3-docutils python3-docutils 0.23+dfsg-2 install ok installed python3-email-validator python3-email-validator 2.3.0-1 install ok installed python3-galaxy-common python3-galaxy-common 0.0.3 install ok installed python3-galaxy-tool-util python3-galaxy-tool-util 26.1.1-1 install ok installed python3-galaxy-tool-util-models python3-galaxy-tool-util-models 26.1.1-1 install ok installed python3-galaxy-util python3-galaxy-util 26.1.1-1 install ok installed python3-html5lib python3-html5lib 1.2-5 install ok installed python3-idna python3-idna 3.20-1 install ok installed python3-jsonschema python3-jsonschema 4.26.0-3 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2025.9.1-1 install ok installed python3-lxml:amd64 python3-lxml 6.1.3-1 install ok installed python3-markupsafe python3-markupsafe 3.0.3-2+b1 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3-packaging python3-packaging 26.2-3 install ok installed python3-pydantic python3-pydantic 2.13.5-2 install ok installed python3-pydantic-core python3-pydantic-core 2.46.5-2 install ok installed python3-pydantic-extra-types python3-pydantic-extra-types 2.11.2-3 install ok installed python3-pyparsing python3-pyparsing 3.3.3-1 install ok installed python3-referencing python3-referencing 0.37.0+~2025.1.1-3 install ok installed python3-requests python3-requests 2.34.2-1 install ok installed python3-roman-numerals python3-roman-numerals 4.1.0-1 install ok installed python3-rpds-py python3-rpds-py 0.30.0-2+b1 install ok installed python3-sortedcontainers python3-sortedcontainers 2.4.0-3 install ok installed python3-typing-extensions python3-typing-extensions 4.16.0-5 install ok installed python3-typing-inspection python3-typing-inspection 0.4.4-1 install ok installed python3-urllib3 python3-urllib3 2.8.0-2 install ok installed python3-webencodings python3-webencodings 0.5.1-6 install ok installed python3-yaml python3-yaml 6.0.3-1+b1 install ok installed python3.14 python3.14 3.14.8-1 install ok installed python3.14-minimal python3.14-minimal 3.14.8-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed xml-core xml-core 0.21 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'docutils-common', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgpg-error0:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libxml2-16:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-bleach', 'python3-boltons', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-conda-package-streaming', 'python3-dnspython', 'python3-docutils', 'python3-email-validator', 'python3-galaxy-common', 'python3-galaxy-tool-util-models', 'python3-galaxy-util', 'python3-html5lib', 'python3-idna', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pydantic', 'python3-pydantic-core', 'python3-pydantic-extra-types', 'python3-pyparsing', 'python3-referencing', 'python3-requests', 'python3-roman-numerals', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'xml-core', 'python3-galaxy-tool-util'] 0m44.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates docutils-common libexpat1 libffi8 libgcrypt20 libgpg-error0 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 libxml2-16 libxslt1.1 libyaml-0-2 media-types netbase openssl python3 python3-annotated-types python3-attr python3-bleach python3-boltons python3-certifi python3-chardet python3-charset-normalizer python3-conda-package-streaming python3-dnspython python3-docutils python3-email-validator python3-galaxy-common python3-galaxy-tool-util python3-galaxy-tool-util-models python3-galaxy-util python3-html5lib python3-idna python3-jsonschema python3-jsonschema-specifications python3-lxml python3-markupsafe python3-minimal python3-packaging python3-pydantic python3-pydantic-core python3-pydantic-extra-types python3-pyparsing python3-referencing python3-requests python3-roman-numerals python3-rpds-py python3-sortedcontainers python3-typing-extensions python3-typing-inspection python3-urllib3 python3-webencodings python3-yaml python3.14 python3.14-minimal readline-common sgml-base xml-core 0 upgraded, 0 newly installed, 61 to remove and 0 not upgraded. After this operation, 67.8 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8345 files and directories currently installed.) Removing python3-galaxy-tool-util (26.1.1-1) ... Removing python3-galaxy-util (26.1.1-1) ... Removing python3-conda-package-streaming (0.13.0-2) ... Removing python3-requests (2.34.2-1) ... Removing python3-certifi (2026.7.22+ds-1) ... Removing ca-certificates (20260816) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-docutils (0.23+dfsg-2) ... Removing docutils-common (0.23+dfsg-2) ... Removing python3-jsonschema (4.26.0-3) ... Removing python3-jsonschema-specifications (2025.9.1-1) ... Removing python3-referencing (0.37.0+~2025.1.1-3) ... Removing python3-rpds-py (0.30.0-2+b1) ... Removing python3-sortedcontainers (2.4.0-3) ... Removing python3-yaml (6.0.3-1+b1) ... Removing python3-roman-numerals (4.1.0-1) ... Removing python3-lxml:amd64 (6.1.3-1) ... Removing libxslt1.1:amd64 (1.1.45-0.1) ... Removing libgcrypt20:amd64 (1.12.4-2) ... Removing libgpg-error0:amd64 (1.61-5) ... Removing libxml2-16:amd64 (2.15.4+dfsg-1) ... Removing libyaml-0-2:amd64 (0.2.5-2+b1) ... Removing python3-galaxy-tool-util-models (26.1.1-1) ... Removing python3-pydantic-extra-types (2.11.2-3) ... Removing python3-pydantic (2.13.5-2) ... Removing python3-email-validator (2.3.0-1) ... Removing python3-dnspython (2.8.0-6) ... Removing openssl (3.6.5-1) ... Removing python3-annotated-types (0.8.0-1) ... Removing python3-attr (26.1.0-1) ... Removing python3-bleach (6.3.0-1) ... Removing python3-boltons (26.2.0-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.7-2+b1) ... Removing python3-galaxy-common (0.0.3) ... Removing python3-html5lib (1.2-5) ... Removing python3-idna (3.20-1) ... Removing python3-markupsafe (3.0.3-2+b1) ... Removing python3-packaging (26.2-3) ... Removing python3-pydantic-core (2.46.5-2) ... Removing python3-pyparsing (3.3.3-1) ... Removing python3-typing-inspection (0.4.4-1) ... Removing python3-typing-extensions (4.16.0-5) ... Removing python3-urllib3 (2.8.0-2) ... Removing python3-webencodings (0.5.1-6) ... Removing xml-core (0.21) ... Removing sgml-base (1.31+nmu1) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.8-1) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.8-1) ... Removing libexpat1:amd64 (2.9.0-1) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libpython3.14-minimal:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.43-7) ... 0m44.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'docutils-common', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgpg-error0:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libxml2-16:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-bleach', 'python3-boltons', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-conda-package-streaming', 'python3-dnspython', 'python3-docutils', 'python3-email-validator', 'python3-galaxy-common', 'python3-galaxy-tool-util-models', 'python3-galaxy-util', 'python3-html5lib', 'python3-idna', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pydantic', 'python3-pydantic-core', 'python3-pydantic-extra-types', 'python3-pyparsing', 'python3-referencing', 'python3-requests', 'python3-roman-numerals', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'xml-core', 'python3-galaxy-tool-util'] 0m44.7s INFO: Running scripts post_remove 0m44.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_remove_exceptions'] 0m44.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_remove_exceptions'] 0m44.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg', '--purge', 'ca-certificates', 'docutils-common', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgpg-error0:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libxml2-16:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-bleach', 'python3-boltons', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-conda-package-streaming', 'python3-dnspython', 'python3-docutils', 'python3-email-validator', 'python3-galaxy-common', 'python3-galaxy-tool-util-models', 'python3-galaxy-util', 'python3-html5lib', 'python3-idna', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pydantic', 'python3-pydantic-core', 'python3-pydantic-extra-types', 'python3-pyparsing', 'python3-referencing', 'python3-requests', 'python3-roman-numerals', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'xml-core'] 0m44.8s DUMP: (Reading database ... 4964 files and directories currently installed.) Purging configuration files for ca-certificates (20260816) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for docutils-common (0.23+dfsg-2) ... dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgcrypt20 which is not installed dpkg: warning: ignoring request to remove libgpg-error0 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.8-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxslt1.1 which is not installed dpkg: warning: ignoring request to remove libyaml-0-2 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.6) ... Purging configuration files for openssl (3.6.5-1) ... Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-annotated-types which is not installed dpkg: warning: ignoring request to remove python3-attr which is not installed dpkg: warning: ignoring request to remove python3-bleach which is not installed dpkg: warning: ignoring request to remove python3-boltons which is not installed dpkg: warning: ignoring request to remove python3-certifi which is not installed dpkg: warning: ignoring request to remove python3-chardet which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-conda-package-streaming which is not installed dpkg: warning: ignoring request to remove python3-dnspython which is not installed dpkg: warning: ignoring request to remove python3-docutils which is not installed dpkg: warning: ignoring request to remove python3-email-validator which is not installed dpkg: warning: ignoring request to remove python3-galaxy-common which is not installed dpkg: warning: ignoring request to remove python3-galaxy-tool-util-models which is not installed dpkg: warning: ignoring request to remove python3-galaxy-util which is not installed dpkg: warning: ignoring request to remove python3-html5lib which is not installed dpkg: warning: ignoring request to remove python3-idna which is not installed Purging configuration files for python3-jsonschema (4.26.0-3) ... dpkg: warning: ignoring request to remove python3-jsonschema-specifications which is not installed dpkg: warning: ignoring request to remove python3-lxml which is not installed dpkg: warning: ignoring request to remove python3-markupsafe which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-packaging which is not installed dpkg: warning: ignoring request to remove python3-pydantic which is not installed dpkg: warning: ignoring request to remove python3-pydantic-core which is not installed dpkg: warning: ignoring request to remove python3-pydantic-extra-types which is not installed dpkg: warning: ignoring request to remove python3-pyparsing which is not installed dpkg: warning: ignoring request to remove python3-referencing which is not installed dpkg: warning: ignoring request to remove python3-requests which is not installed dpkg: warning: ignoring request to remove python3-roman-numerals which is not installed dpkg: warning: ignoring request to remove python3-rpds-py which is not installed dpkg: warning: ignoring request to remove python3-sortedcontainers which is not installed dpkg: warning: ignoring request to remove python3-typing-extensions which is not installed dpkg: warning: ignoring request to remove python3-typing-inspection which is not installed dpkg: warning: ignoring request to remove python3-urllib3 which is not installed dpkg: warning: ignoring request to remove python3-webencodings which is not installed dpkg: warning: ignoring request to remove python3-yaml which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.8-1) ... Purging configuration files for readline-common (8.3-4) ... Purging configuration files for sgml-base (1.31+nmu1) ... Purging configuration files for xml-core (0.21) ... 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg', '--purge', 'ca-certificates', 'docutils-common', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgpg-error0:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libxml2-16:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-bleach', 'python3-boltons', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-conda-package-streaming', 'python3-dnspython', 'python3-docutils', 'python3-email-validator', 'python3-galaxy-common', 'python3-galaxy-tool-util-models', 'python3-galaxy-util', 'python3-html5lib', 'python3-idna', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pydantic', 'python3-pydantic-core', 'python3-pydantic-extra-types', 'python3-pyparsing', 'python3-referencing', 'python3-requests', 'python3-roman-numerals', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'xml-core'] 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg', '--purge', 'python3-galaxy-tool-util'] 0m44.8s DUMP: dpkg: warning: ignoring request to remove python3-galaxy-tool-util which is not installed 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg', '--purge', 'python3-galaxy-tool-util'] 0m44.8s INFO: Running scripts post_purge 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_purge_exceptions'] 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_purge_exceptions'] 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg', '--purge', '--pending'] 0m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg', '--purge', '--pending'] 0m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg', '--remove', '--pending'] 0m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg', '--remove', '--pending'] 0m44.9s INFO: Running scripts post_test 0m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_test_exceptions'] 0m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'tmp/scripts/post_test_exceptions'] 0m44.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m45.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg-divert', '--list'] 0m45.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'dpkg-divert', '--list'] 0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', 'clean'] 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5', 'apt-get', 'clean'] 0m45.2s DEBUG: Recording chroot state 0m46.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/shm'] 0m46.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/shm'] 0m46.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/console'] 0m46.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/console'] 0m46.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/ptmx'] 0m46.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/ptmx'] 0m46.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/pts'] 0m46.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/dev/pts'] 0m46.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/proc'] 0m46.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5/proc'] 0m46.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m46.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpfynuqnd5'] 0m46.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpfynuqnd5 0m46.4s INFO: PASS: Upgrading between Debian distributions. 0m46.4s INFO: PASS: All tests. 0m46.4s INFO: piuparts run ends. ret=0 End: 2026-10-09 03:15:13 GMT