Start: 2021-12-18 14:59:16 GMT [testing] Package: python3-geneimpacts Source: python-geneimpacts Version: 0.3.7-3 Installed-Size: 91 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any Recommends: snpeff, bcftools Description: wraps command line tools to assess variants in gene sequences Homepage: https://github.com/brentp/geneimpacts Description-md5: 5aa691288383fd64ae986ad138293a4c Section: science Priority: optional Filename: pool/main/p/python-geneimpacts/python3-geneimpacts_0.3.7-3_all.deb Size: 33664 MD5sum: be288960b91796e2a2d77dc2429c2304 SHA256: 80e8d41d7371890f8e86facd87e8a0211af69c1af0496859a79ebca8cbd3f1d0 [sid] Package: python3-geneimpacts Source: python-geneimpacts Version: 0.3.7-4 Installed-Size: 91 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any Recommends: snpeff, bcftools Description: wraps command line tools to assess variants in gene sequences Homepage: https://github.com/brentp/geneimpacts Description-md5: 5aa691288383fd64ae986ad138293a4c Section: science Priority: optional Filename: pool/main/p/python-geneimpacts/python3-geneimpacts_0.3.7-4_all.deb Size: 33744 MD5sum: 08f40562fdf7ba8ec1cb873cc1338fd6 SHA256: 4fff18d40345b911b05be9658a679137ff2dfce257f13400b24aaf2c296d9abf Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-geneimpacts=0.3.7-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-geneimpacts=0.3.7-4 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-18-amd64 #1 SMP Debian 4.19.208-1 (2021-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp9pjrz8ww 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp9pjrz8ww 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/proc'] 0m2.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/proc'] 0m2.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/pts'] 0m2.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/pts'] 0m2.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/ptmx'] 0m2.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/ptmx'] 0m2.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/console'] 0m2.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/console'] 0m2.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/shm'] 0m2.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/shm'] 0m2.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.6s DEBUG: Created policy-rc.d and chmodded it. 0m2.6s DEBUG: Created resolv.conf. 0m2.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp9pjrz8ww/tmp/scripts/ 0m2.6s INFO: Running scripts post_chroot_unpack 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', 'update'] 0m5.7s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [129 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8263 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5687 kB] Fetched 14.1 MB in 2s (6209 kB/s) Reading package lists... 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', 'update'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', '-yf', 'dist-upgrade'] 0m7.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bash dpkg libc-bin libc6 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7553 kB of archives. After this operation, 92.2 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.33-1 [2826 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.33-1 [829 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 bash amd64 5.1-5+b1 [1411 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 dpkg amd64 1.21.1 [2487 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7553 kB in 0s (70.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6667 files and directories currently installed.) Preparing to unpack .../libc6_2.33-1_amd64.deb ... Unpacking libc6:amd64 (2.33-1) over (2.32-5) ... Setting up libc6:amd64 (2.33-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6667 files and directories currently installed.) Preparing to unpack .../libc-bin_2.33-1_amd64.deb ... Unpacking libc-bin (2.33-1) over (2.32-5) ... Setting up libc-bin (2.33-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6667 files and directories currently installed.) Preparing to unpack .../bash_5.1-5+b1_amd64.deb ... Unpacking bash (5.1-5+b1) over (5.1-5) ... Setting up bash (5.1-5+b1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6668 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.21.1_amd64.deb ... Unpacking dpkg (1.21.1) over (1.20.9) ... Setting up dpkg (1.21.1) ... Installing new version of config file /etc/cron.daily/dpkg ... 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', '-yf', 'dist-upgrade'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.9s DUMP: 20c7901c5740fd4e1e3cc4a92a4294b2 - 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.9s INFO: Running scripts post_setup 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_dummy_users'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_dummy_users'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_forbid_home'] 0m9.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_forbid_home'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_minimize'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_minimize'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_zz_backports'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_setup_zz_backports'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.13 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-5+b1 install ok installed bsdutils bsdutils 1:2.37.2-4 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-13 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-12 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.61 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.13 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.2-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-1 install ok installed libc6:amd64 libc6 2.33-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.26-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-12 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-3+b1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-4 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-4 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-12 install ok installed libsystemd0:amd64 libsystemd0 249.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 249.7-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-4 install ok installed ncurses-base ncurses-base 6.3-1 install ok installed ncurses-bin ncurses-bin 6.3-1 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl-base perl-base 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.00-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m9.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m9.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m9.8s INFO: Running scripts is_testable 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/is_testable_uninstallable'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/is_testable_uninstallable'] 0m9.8s INFO: Running scripts pre_test 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_test_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_test_exceptions'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_test_root_password'] 0m9.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_test_root_password'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'show', '--no-all-versions', 'python3-geneimpacts'] 0m9.9s DUMP: Package: python3-geneimpacts Source: python-geneimpacts Version: 0.3.7-3 Installed-Size: 91 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any Recommends: snpeff, bcftools Description-en: wraps command line tools to assess variants in gene sequences Interpersonal differences in DNA is responsible for variations in response to external stimuli, the efficiency of metabolism or may even cause what is referenced as a genetic disorder. . A range of tools have been created to predict the importance of differences (polymorphisms) in genetic sequences at single nucleotides, SNPs. This Python class wraps and represents findings provided by any of the tools snpEff, VEP and BCFT. Description-md5: 5aa691288383fd64ae986ad138293a4c Homepage: https://github.com/brentp/geneimpacts Section: science Priority: optional Filename: pool/main/p/python-geneimpacts/python3-geneimpacts_0.3.7-3_all.deb Size: 33664 MD5sum: be288960b91796e2a2d77dc2429c2304 SHA256: 80e8d41d7371890f8e86facd87e8a0211af69c1af0496859a79ebca8cbd3f1d0 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'show', '--no-all-versions', 'python3-geneimpacts'] 0m9.9s INFO: apt-cache knows about the following packages: python3-geneimpacts 0m9.9s INFO: Running scripts pre_install 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_database-server'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_database-server'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_exceptions'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_exceptions'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_extras'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_extras'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy'] 0m10.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy', 'python3-geneimpacts'] 0m10.1s DUMP: python3-geneimpacts: Installed: (none) Candidate: 0.3.7-3 Version table: 0.3.7-3 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy', 'python3-geneimpacts'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', '-y', 'install', 'python3-geneimpacts'] 0m14.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libexpat1 libmpdec3 libncursesw6 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 media-types python3 python3-minimal python3.9 python3.9-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binutils binfmt-support readline-doc Recommended packages: libgpm2 ca-certificates snpeff bcftools The following NEW packages will be installed: libexpat1 libmpdec3 libncursesw6 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 media-types python3 python3-geneimpacts python3-minimal python3.9 python3.9-minimal readline-common 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 6440 kB of archives. After this operation, 23.0 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libpython3.9-minimal amd64 3.9.9-1 [804 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.4.1-3 [104 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 python3.9-minimal amd64 3.9.9-1 [1925 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.9.7-1 [38.4 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 media-types all 4.0.0 [30.3 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.3-1 [133 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.1-2 [73.8 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.1-2 [168 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libpython3.9-stdlib amd64 3.9.9-1 [1682 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 python3.9 amd64 3.9.9-1 [484 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.9.7-1 [21.6 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.9.7-1 [38.0 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 python3-geneimpacts all 0.3.7-3 [33.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6440 kB in 0s (46.9 MB/s) Selecting previously unselected package libpython3.9-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6676 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.9-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.4.1-3_amd64.deb ... Unpacking libexpat1:amd64 (2.4.1-3) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.9-1_amd64.deb ... Unpacking python3.9-minimal (3.9.9-1) ... Setting up libpython3.9-minimal:amd64 (3.9.9-1) ... Setting up libexpat1:amd64 (2.4.1-3) ... Setting up python3.9-minimal (3.9.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6970 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.7-1_amd64.deb ... Unpacking python3-minimal (3.9.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../3-libncursesw6_6.3-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.3-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.1-2_all.deb ... Unpacking readline-common (8.1-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../5-libreadline8_8.1-2_amd64.deb ... Unpacking libreadline8:amd64 (8.1-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.36.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.36.0-2) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.9-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.9-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.9-1_amd64.deb ... Unpacking python3.9 (3.9.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.9.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.7-1) ... Setting up python3-minimal (3.9.7-1) ... Selecting previously unselected package python3. (Reading database ... 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Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up readline-common (8.1-2) ... Setting up libreadline8:amd64 (8.1-2) ... Setting up libpython3.9-stdlib:amd64 (3.9.9-1) ... Setting up libpython3-stdlib:amd64 (3.9.7-1) ... Setting up python3.9 (3.9.9-1) ... Setting up python3 (3.9.7-1) ... Setting up python3-geneimpacts (0.3.7-3) ... Processing triggers for libc-bin (2.33-1) ... 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', '-y', 'install', 'python3-geneimpacts'] 0m14.0s INFO: Running scripts post_install 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_install_exceptions'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_install_exceptions'] 0m14.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m14.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m14.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp9pjrz8ww to sid 0m14.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m14.2s INFO: Running scripts pre_distupgrade 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', 'update'] 0m18.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8882 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6647 kB] Fetched 15.7 MB in 3s (5235 kB/s) Reading package lists... 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', 'update'] 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', '-yf', 'dist-upgrade'] 0m22.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debianutils gcc-11-base libcrypt1 libgcc-s1 libgcrypt20 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libstdc++6 python3 python3-geneimpacts python3-minimal python3.9 python3.9-minimal sysvinit-utils 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6721 kB of archives. After this operation, 14.3 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.5-1 [93.7 kB] Get:2 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.01-1 [26.4 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.9.8-1 [38.5 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.9.8-1 [38.1 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.27-1 [89.0 kB] Get:6 http://deb.debian.org/debian sid/main amd64 python3.9 amd64 3.9.9-2 [484 kB] Get:7 http://deb.debian.org/debian sid/main amd64 python3.9-minimal amd64 3.9.9-2 [1924 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libpython3.9-minimal amd64 3.9.9-2 [804 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libpython3.9-stdlib amd64 3.9.9-2 [1680 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.9.8-1 [21.6 kB] Get:11 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-13 [207 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-13 [576 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-13 [42.0 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.9.4-5 [662 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3-geneimpacts all 0.3.7-4 [33.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6721 kB in 0s (17.1 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7444 files and directories currently installed.) Preparing to unpack .../python3-geneimpacts_0.3.7-4_all.deb ... Unpacking python3-geneimpacts (0.3.7-4) over (0.3.7-3) ... Setting up libpython3.9-minimal:amd64 (3.9.9-2) ... Setting up python3.9-minimal (3.9.9-2) ... Setting up libpython3.9-stdlib:amd64 (3.9.9-2) ... Setting up libpython3-stdlib:amd64 (3.9.8-1) ... Setting up python3.9 (3.9.9-2) ... Setting up python3 (3.9.8-1) ... Setting up python3-geneimpacts (0.3.7-4) ... Processing triggers for libc-bin (2.33-1) ... 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', '-yf', 'dist-upgrade'] 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.2s DUMP: 45696ed308f51a59257abc8d5c5db566 - 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'show', '--no-all-versions', 'python3-geneimpacts'] 0m23.4s DUMP: Package: python3-geneimpacts Source: python-geneimpacts Version: 0.3.7-4 Installed-Size: 91 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any Recommends: snpeff, bcftools Description-en: wraps command line tools to assess variants in gene sequences Interpersonal differences in DNA is responsible for variations in response to external stimuli, the efficiency of metabolism or may even cause what is referenced as a genetic disorder. . A range of tools have been created to predict the importance of differences (polymorphisms) in genetic sequences at single nucleotides, SNPs. This Python class wraps and represents findings provided by any of the tools snpEff, VEP and BCFT. Description-md5: 5aa691288383fd64ae986ad138293a4c Homepage: https://github.com/brentp/geneimpacts Section: science Priority: optional Filename: pool/main/p/python-geneimpacts/python3-geneimpacts_0.3.7-4_all.deb Size: 33744 MD5sum: 08f40562fdf7ba8ec1cb873cc1338fd6 SHA256: 4fff18d40345b911b05be9658a679137ff2dfce257f13400b24aaf2c296d9abf 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'show', '--no-all-versions', 'python3-geneimpacts'] 0m23.4s INFO: apt-cache knows about the following packages: python3-geneimpacts 0m23.4s INFO: Running scripts pre_install 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_database-server'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_database-server'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_exceptions'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_exceptions'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_extras'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_extras'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy'] 0m23.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy', 'python3-geneimpacts'] 0m23.5s DUMP: python3-geneimpacts: Installed: 0.3.7-4 Candidate: 0.3.7-4 Version table: *** 0.3.7-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy', 'python3-geneimpacts'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', '-y', 'install', 'python3-geneimpacts'] 0m23.9s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-geneimpacts is already the newest version (0.3.7-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', '-y', 'install', 'python3-geneimpacts'] 0m23.9s INFO: Running scripts post_install 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_install_exceptions'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_install_exceptions'] 0m23.9s INFO: Running scripts post_distupgrade 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m24.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m24.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m24.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m24.4s INFO: Running scripts pre_install 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_database-server'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_database-server'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_exceptions'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_exceptions'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_extras'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_extras'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy'] 0m24.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy', 'python3-geneimpacts'] 0m24.5s DUMP: python3-geneimpacts: Installed: 0.3.7-4 Candidate: 0.3.7-4 Version table: *** 0.3.7-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-cache', 'policy', 'python3-geneimpacts'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', '-y', 'install', 'python3-geneimpacts=0.3.7-4'] 0m24.9s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-geneimpacts is already the newest version (0.3.7-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', '-y', 'install', 'python3-geneimpacts=0.3.7-4'] 0m24.9s INFO: Running scripts post_install 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_install_exceptions'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_install_exceptions'] 0m25.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m25.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m25.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', '-ac', '--ignore-obsolete'] 0m26.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', '-ac', '--ignore-obsolete'] 0m26.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.5s DUMP: 0.15.2 0m26.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.5s INFO: Running adequate version 0.15.2 now. 0m26.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'python3-geneimpacts'] 0m26.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'python3-geneimpacts'] 0m26.7s INFO: Running scripts pre_remove 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_exceptions'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/pre_remove_exceptions'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m27.7s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.13 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-5+b1 install ok installed bsdutils bsdutils 1:2.37.2-4 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.5-1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-13 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-13 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.61 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.13 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.2-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-1 install ok installed libc6:amd64 libc6 2.33-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libexpat1:amd64 libexpat1 2.4.1-3 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-13 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-4 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libncursesw6:amd64 libncursesw6 6.3-1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.8-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.9-2 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.9-2 install ok installed libreadline8:amd64 libreadline8 8.1-2 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.36.0-2 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-13 install ok installed libsystemd0:amd64 libsystemd0 249.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 249.7-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mount mount 2.37.2-4 install ok installed ncurses-base ncurses-base 6.3-1 install ok installed ncurses-bin ncurses-bin 6.3-1 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl-base perl-base 5.32.1-6 install ok installed python3 python3 3.9.8-1 install ok installed python3-geneimpacts python3-geneimpacts 0.3.7-4 install ok installed python3-minimal python3-minimal 3.9.8-1 install ok installed python3.9 python3.9 3.9.9-2 install ok installed python3.9-minimal python3.9-minimal 3.9.9-2 install ok installed readline-common readline-common 8.1-2 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', 'remove', 'libexpat1:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'python3-geneimpacts'] 0m29.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libexpat1 libmpdec3 libncursesw6 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 media-types python3 python3-geneimpacts python3-minimal python3.9 python3.9-minimal readline-common 0 upgraded, 0 newly installed, 15 to remove and 0 not upgraded. After this operation, 23.0 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7444 files and directories currently installed.) Removing python3-geneimpacts (0.3.7-4) ... Removing python3 (3.9.8-1) ... Removing python3.9 (3.9.9-2) ... Removing python3-minimal (3.9.8-1) ... Removing python3.9-minimal (3.9.9-2) ... Removing libexpat1:amd64 (2.4.1-3) ... Removing libpython3-stdlib:amd64 (3.9.8-1) ... Removing libpython3.9-stdlib:amd64 (3.9.9-2) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncursesw6:amd64 (6.3-1) ... Removing libpython3.9-minimal:amd64 (3.9.9-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.1-2) ... Removing libsqlite3-0:amd64 (3.36.0-2) ... Removing media-types (4.0.0) ... Removing readline-common (8.1-2) ... Processing triggers for libc-bin (2.33-1) ... 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', 'remove', 'libexpat1:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'python3-geneimpacts'] 0m29.0s INFO: Running scripts post_remove 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_remove_exceptions'] 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_remove_exceptions'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg', '--purge', 'libexpat1:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m29.1s DUMP: dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed (Reading database ... 6676 files and directories currently installed.) Purging configuration files for libpython3.9-minimal:amd64 (3.9.9-2) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for media-types (4.0.0) ... Purging configuration files for python3 (3.9.8-1) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.9-2) ... Purging configuration files for readline-common (8.1-2) ... 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg', '--purge', 'libexpat1:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg', '--purge', 'python3-geneimpacts'] 0m29.1s DUMP: dpkg: warning: ignoring request to remove python3-geneimpacts which isn't installed 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg', '--purge', 'python3-geneimpacts'] 0m29.1s INFO: Running scripts post_purge 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_purge_exceptions'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_purge_exceptions'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg', '--purge', '--pending'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg', '--purge', '--pending'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg', '--remove', '--pending'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg', '--remove', '--pending'] 0m29.1s INFO: Running scripts post_test 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_test_exceptions'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'tmp/scripts/post_test_exceptions'] 0m29.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m29.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg-divert', '--list'] 0m29.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'dpkg-divert', '--list'] 0m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', 'clean'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww', 'apt-get', 'clean'] 0m29.5s DEBUG: Recording chroot state 0m30.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/shm'] 0m30.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/shm'] 0m30.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/console'] 0m30.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/console'] 0m30.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/ptmx'] 0m30.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/ptmx'] 0m30.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/pts'] 0m30.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/dev/pts'] 0m30.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/proc'] 0m30.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww/proc'] 0m30.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m30.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9pjrz8ww'] 0m30.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp9pjrz8ww 0m30.4s INFO: PASS: Upgrading between Debian distributions. 0m30.4s INFO: PASS: All tests. 0m30.4s INFO: piuparts run ends. ret=0 End: 2021-12-18 14:59:46 GMT