Start: 2022-12-04 21:45:15 GMT [testing] Package: python3-gtfparse Source: python-gtfparse Version: 1.2.1+ds-2 Installed-Size: 50 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-numpy, python3-pandas, python3:any Description: parser for gene transfer format (aka GFF2) Homepage: https://github.com/openvax/gtfparse Description-md5: b92d07db0ee12ea16a536214ed6a9b45 Section: science Priority: optional Filename: pool/main/p/python-gtfparse/python3-gtfparse_1.2.1+ds-2_all.deb Size: 10004 MD5sum: 426eaf4e3d63b8d60614f9f5efe143d0 SHA256: a9db08e7a24652c8a6f8a9543f265bd3f6c2b5fa5a020e86548b4ae6657d54b4 [sid] Package: python3-gtfparse Source: python-gtfparse Version: 1.3.0+ds-1 Installed-Size: 49 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-numpy, python3-pandas, python3:any Description: parser for gene transfer format (aka GFF2) Homepage: https://github.com/openvax/gtfparse Description-md5: b92d07db0ee12ea16a536214ed6a9b45 Section: science Priority: optional Filename: pool/main/p/python-gtfparse/python3-gtfparse_1.3.0+ds-1_all.deb Size: 10096 MD5sum: 62045d6f46ce9e789cb09a54a405c2a4 SHA256: 9e6e55d00dcdeae669ea8032fda0867622734864a2be63c2d98527b33936e305 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-gtfparse=1.3.0+ds-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-gtfparse=1.3.0+ds-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpyj1iqwen 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpyj1iqwen 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/proc'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/proc'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/pts'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/pts'] 0m2.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/ptmx'] 0m2.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/ptmx'] 0m2.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/console'] 0m2.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/console'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/shm'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/shm'] 0m2.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.5s DEBUG: Created policy-rc.d and chmodded it. 0m2.5s DEBUG: Created resolv.conf. 0m2.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpyj1iqwen/tmp/scripts/ 0m2.5s INFO: Running scripts post_chroot_unpack 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', 'update'] 0m4.8s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [164 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8755 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5909 kB] Fetched 14.8 MB in 2s (9058 kB/s) Reading package lists... 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', 'update'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: debconf libc-bin libc6 libsystemd0 libudev1 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3904 kB of archives. After this operation, 21.5 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-6 [2745 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-6 [604 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 debconf all 1.5.80 [121 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.2-1 [329 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.2-1 [106 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3904 kB in 0s (55.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../libc6_2.36-6_amd64.deb ... Unpacking libc6:amd64 (2.36-6) over (2.36-5) ... Setting up libc6:amd64 (2.36-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-6_amd64.deb ... Unpacking libc-bin (2.36-6) over (2.36-5) ... Setting up libc-bin (2.36-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../debconf_1.5.80_all.deb ... Unpacking debconf (1.5.80) over (1.5.79) ... Setting up debconf (1.5.80) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.2-1_amd64.deb ... Unpacking libsystemd0:amd64 (252.2-1) over (252.1-1) ... Setting up libsystemd0:amd64 (252.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../libudev1_252.2-1_amd64.deb ... Unpacking libudev1:amd64 (252.2-1) over (252.1-1) ... Setting up libudev1:amd64 (252.2-1) ... Processing triggers for libc-bin (2.36-6) ... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.0s DUMP: 83d8afab6fc8519bdece71e04cc203cf - 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.0s INFO: Running scripts post_setup 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_dummy_users'] 0m7.7s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_dummy_users'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_forbid_home'] 0m7.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_forbid_home'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_minimize'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_minimize'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_zz_backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_setup_zz_backports'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9+b1 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-6 install ok installed libc6:amd64 libc6 2.36-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.8-0.0 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 252.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 252.2-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m8.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m8.1s INFO: Running scripts is_testable 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/is_testable_uninstallable'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/is_testable_uninstallable'] 0m8.1s INFO: Running scripts pre_test 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_test_exceptions'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_test_exceptions'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_test_root_password'] 0m8.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_test_root_password'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'show', '--no-all-versions', 'python3-gtfparse'] 0m8.4s DUMP: Package: python3-gtfparse Source: python-gtfparse Version: 1.2.1+ds-2 Installed-Size: 50 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-numpy, python3-pandas, python3:any Description-en: parser for gene transfer format (aka GFF2) You find a gene in the genome? Or a feature about it? The gene transfer format (GTF, identical to GFF2) allows your program or your database to exchange this information so it can be presented with genome browsers or used e.g. as a selection for other features like nucleotide variants. . This package provides a parser for GTF/GFF2 files, i.e. sets of routines that read that file and support the computational interpretation of these data. Description-md5: b92d07db0ee12ea16a536214ed6a9b45 Homepage: https://github.com/openvax/gtfparse Section: science Priority: optional Filename: pool/main/p/python-gtfparse/python3-gtfparse_1.2.1+ds-2_all.deb Size: 10004 MD5sum: 426eaf4e3d63b8d60614f9f5efe143d0 SHA256: a9db08e7a24652c8a6f8a9543f265bd3f6c2b5fa5a020e86548b4ae6657d54b4 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'show', '--no-all-versions', 'python3-gtfparse'] 0m8.4s INFO: apt-cache knows about the following packages: python3-gtfparse 0m8.4s INFO: Running scripts pre_install 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_database-server'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_database-server'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_exceptions'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_exceptions'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_extras'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_extras'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy'] 0m8.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy', 'python3-gtfparse'] 0m8.5s DUMP: python3-gtfparse: Installed: (none) Candidate: 1.2.1+ds-2 Version table: 1.2.1+ds-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy', 'python3-gtfparse'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', '-y', 'install', 'python3-gtfparse'] 0m21.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libblas3 libexpat1 libgfortran5 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libmpdec3 libncursesw6 libnsl2 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 libsqlite3-0 libssl3 libtirpc-common libtirpc3 media-types python3 python3-dateutil python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources python3-six python3-tz python3.10 python3.10-minimal python3.11 python3.11-minimal readline-common Suggested packages: krb5-doc krb5-user python3-doc python3-tk python3-venv gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python3-setuptools python3.10-venv python3.10-doc binutils binfmt-support python3.11-venv python3.11-doc readline-doc Recommended packages: krb5-locales libgpm2 python3-scipy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba The following NEW packages will be installed: libblas3 libexpat1 libgfortran5 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libmpdec3 libncursesw6 libnsl2 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 libsqlite3-0 libssl3 libtirpc-common libtirpc3 media-types python3 python3-dateutil python3-gtfparse python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources python3-six python3-tz python3.10 python3.10-minimal python3.11 python3.11-minimal readline-common 0 upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 30.6 MB of archives. After this operation, 146 MB of additional disk space will be used. 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Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libk5crypto3:amd64 (1.20.1-1) ... Setting up libgfortran5:amd64 (12.2.0-9) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libkrb5-3:amd64 (1.20.1-1) ... Setting up libpython3.11-minimal:amd64 (3.11.0-3) ... Setting up readline-common (8.2-1.2) ... Setting up python3.11-minimal (3.11.0-3) ... Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2-1.2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.0-3) ... Setting up libpython3.10-stdlib:amd64 (3.10.8-3) ... Setting up libpython3-stdlib:amd64 (3.10.6-1) ... Setting up python3.11 (3.11.0-3) ... Setting up python3.10 (3.10.8-3) ... Setting up python3 (3.10.6-1) ... Setting up python3-tz (2022.6-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-dateutil (2.8.2-1) ... Setting up python3-pkg-resources (65.5.0-1) ... Setting up python3-numpy (1:1.21.5-2) ... Setting up python3-pandas-lib:amd64 (1.3.5+dfsg-6) ... Setting up python3-pandas (1.3.5+dfsg-6) ... Setting up python3-gtfparse (1.2.1+ds-2) ... Processing triggers for libc-bin (2.36-6) ... 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', '-y', 'install', 'python3-gtfparse'] 0m21.4s INFO: Running scripts post_install 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_install_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_install_exceptions'] 0m21.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m22.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m22.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpyj1iqwen to sid 0m22.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m22.0s INFO: Running scripts pre_distupgrade 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_distupgrade_exceptions'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_distupgrade_exceptions'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', 'update'] 0m25.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9397 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6947 kB] Fetched 16.5 MB in 3s (5324 kB/s) Reading package lists... 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', 'update'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', '-yf', 'dist-upgrade'] 0m28.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libmd0 The following packages will be upgraded: dpkg libacl1 libattr1 libblas3 liblapack3 liblzma5 libpcre2-8-0 libpython3-stdlib python3 python3-gtfparse python3-minimal tar zlib1g 13 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 6386 kB of archives. After this operation, 284 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:2 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.1 [836 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.21.11 [2404 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.10.6-3 [25.5 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.10.6-3 [25.2 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.10.6-3 [8588 B] Get:7 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.1-2 [25.2 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.1-3 [15.4 kB] Get:9 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.2.9-0.0 [189 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.40-3 [260 kB] Get:11 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:13 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3-gtfparse all 1.3.0+ds-1 [10.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6386 kB in 0s (69.2 MB/s) Selecting previously unselected package libmd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12753 files and directories currently installed.) Preparing to unpack .../libmd0_1.0.4-2_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-2) ... Setting up libmd0:amd64 (1.0.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12759 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.1_amd64.deb ... Unpacking tar (1.34+dfsg-1.1) over (1.34+dfsg-1) ... Setting up tar (1.34+dfsg-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12759 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.11_amd64.deb ... Unpacking dpkg (1.21.11) over (1.21.9+b1) ... Setting up dpkg (1.21.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12757 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.10.6-3_amd64.deb ... Unpacking python3-minimal (3.10.6-3) over (3.10.6-1) ... Setting up python3-minimal (3.10.6-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12757 files and directories currently installed.) Preparing to unpack .../python3_3.10.6-3_amd64.deb ... Unpacking python3 (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../libpython3-stdlib_3.10.6-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../libacl1_2.3.1-2_amd64.deb ... Unpacking libacl1:amd64 (2.3.1-2) over (2.3.1-1) ... Setting up libacl1:amd64 (2.3.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12758 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.1-3_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.1-3) over (1:2.5.1-1) ... Setting up libattr1:amd64 (1:2.5.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12759 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.9-0.0_amd64.deb ... Unpacking liblzma5:amd64 (5.2.9-0.0) over (5.2.8-0.0) ... Setting up liblzma5:amd64 (5.2.9-0.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12759 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.40-3_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.40-3) over (10.40-2) ... Setting up libpcre2-8-0:amd64 (10.40-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12759 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.13.dfsg-1) over (1:1.2.11.dfsg-4.1) ... Setting up zlib1g:amd64 (1:1.2.13.dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12759 files and directories currently installed.) Preparing to unpack .../libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) over (3.10.1-2) ... Preparing to unpack .../liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) over (3.10.1-2) ... Preparing to unpack .../python3-gtfparse_1.3.0+ds-1_all.deb ... Unpacking python3-gtfparse (1.3.0+ds-1) over (1.2.1+ds-2) ... Setting up libblas3:amd64 (3.11.0-2) ... Setting up libpython3-stdlib:amd64 (3.10.6-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... Setting up python3 (3.10.6-3) ... Setting up python3-gtfparse (1.3.0+ds-1) ... Processing triggers for libc-bin (2.36-6) ... 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', '-yf', 'dist-upgrade'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.5s DUMP: cbacf1ad43e088d77c560193033a6784 - 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'show', '--no-all-versions', 'python3-gtfparse'] 0m28.7s DUMP: Package: python3-gtfparse Source: python-gtfparse Version: 1.3.0+ds-1 Installed-Size: 49 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-numpy, python3-pandas, python3:any Description-en: parser for gene transfer format (aka GFF2) You find a gene in the genome? Or a feature about it? The gene transfer format (GTF, identical to GFF2) allows your program or your database to exchange this information so it can be presented with genome browsers or used e.g. as a selection for other features like nucleotide variants. . This package provides a parser for GTF/GFF2 files, i.e. sets of routines that read that file and support the computational interpretation of these data. Description-md5: b92d07db0ee12ea16a536214ed6a9b45 Homepage: https://github.com/openvax/gtfparse Section: science Priority: optional Filename: pool/main/p/python-gtfparse/python3-gtfparse_1.3.0+ds-1_all.deb Size: 10096 MD5sum: 62045d6f46ce9e789cb09a54a405c2a4 SHA256: 9e6e55d00dcdeae669ea8032fda0867622734864a2be63c2d98527b33936e305 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'show', '--no-all-versions', 'python3-gtfparse'] 0m28.7s INFO: apt-cache knows about the following packages: python3-gtfparse 0m28.7s INFO: Running scripts pre_install 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_database-server'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_database-server'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_exceptions'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_exceptions'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_extras'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_extras'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy'] 0m28.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy', 'python3-gtfparse'] 0m28.9s DUMP: python3-gtfparse: Installed: 1.3.0+ds-1 Candidate: 1.3.0+ds-1 Version table: *** 1.3.0+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy', 'python3-gtfparse'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', '-y', 'install', 'python3-gtfparse'] 0m29.3s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-gtfparse is already the newest version (1.3.0+ds-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', '-y', 'install', 'python3-gtfparse'] 0m29.3s INFO: Running scripts post_install 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_install_exceptions'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_install_exceptions'] 0m29.3s INFO: Running scripts post_distupgrade 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_distupgrade_exceptions'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_distupgrade_exceptions'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_distupgrade_zz_backports'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_distupgrade_zz_backports'] 0m29.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m29.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m29.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m30.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m30.7s INFO: Running scripts pre_install 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_database-server'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_database-server'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_exceptions'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_exceptions'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_extras'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_extras'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy'] 0m30.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy'] 0m30.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy', 'python3-gtfparse'] 0m30.9s DUMP: python3-gtfparse: Installed: 1.3.0+ds-1 Candidate: 1.3.0+ds-1 Version table: *** 1.3.0+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-cache', 'policy', 'python3-gtfparse'] 0m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', '-y', 'install', 'python3-gtfparse=1.3.0+ds-1'] 0m31.2s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-gtfparse is already the newest version (1.3.0+ds-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', '-y', 'install', 'python3-gtfparse=1.3.0+ds-1'] 0m31.2s INFO: Running scripts post_install 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_install_exceptions'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_install_exceptions'] 0m31.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m32.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m33.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', '-ac', '--ignore-obsolete'] 0m34.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', '-ac', '--ignore-obsolete'] 0m34.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m34.4s DUMP: 0.15.6 0m34.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m34.4s INFO: Running adequate version 0.15.6 now. 0m34.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'python3-gtfparse'] 0m34.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'python3-gtfparse'] 0m34.5s INFO: Running scripts pre_remove 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_exceptions'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/pre_remove_exceptions'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m35.6s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.11 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-3 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-6 install ok installed libc6:amd64 libc6 2.36-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-9 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-1 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.9-0.0 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libncursesw6:amd64 libncursesw6 6.3+20220423-2 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-3 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.10.6-3 install ok installed libpython3.10-minimal:amd64 libpython3.10-minimal 3.10.8-3 install ok installed libpython3.10-stdlib:amd64 libpython3.10-stdlib 3.10.8-3 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.0-3 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.0-3 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-9 install ok installed libreadline8:amd64 libreadline8 8.2-1.2 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.0-1 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libssl3:amd64 libssl3 3.0.7-1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 252.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libudev1:amd64 libudev1 252.2-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 8.0.0 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed python3 python3 3.10.6-3 install ok installed python3-dateutil python3-dateutil 2.8.2-1 install ok installed python3-gtfparse python3-gtfparse 1.3.0+ds-1 install ok installed python3-minimal python3-minimal 3.10.6-3 install ok installed python3-numpy python3-numpy 1:1.21.5-2 install ok installed python3-pandas python3-pandas 1.3.5+dfsg-6 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.3.5+dfsg-6 install ok installed python3-pkg-resources python3-pkg-resources 65.5.0-1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-tz python3-tz 2022.6-1 install ok installed python3.10 python3.10 3.10.8-3 install ok installed python3.10-minimal python3.10-minimal 3.10.8-3 install ok installed python3.11 python3.11 3.11.0-3 install ok installed python3.11-minimal python3.11-minimal 3.11.0-3 install ok installed readline-common readline-common 8.2-1.2 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1.1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', 'remove', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'media-types', 'python3', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-six', 'python3-tz', 'python3.10', 'python3.10-minimal', 'python3.11', 'python3.11-minimal', 'readline-common', 'python3-gtfparse'] 0m38.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libblas3 libexpat1 libgfortran5 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libmpdec3 libncursesw6 libnsl2 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 libsqlite3-0 libssl3 libtirpc-common libtirpc3 media-types python3 python3-dateutil python3-gtfparse python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources python3-six python3-tz python3.10 python3.10-minimal python3.11 python3.11-minimal readline-common 0 upgraded, 0 newly installed, 39 to remove and 0 not upgraded. After this operation, 146 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12760 files and directories currently installed.) Removing python3-gtfparse (1.3.0+ds-1) ... Removing python3-pandas (1.3.5+dfsg-6) ... Removing python3-pandas-lib:amd64 (1.3.5+dfsg-6) ... Removing python3-numpy (1:1.21.5-2) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing python3.11 (3.11.0-3) ... Removing python3.11-minimal (3.11.0-3) ... Removing python3-dateutil (2.8.2-1) ... Removing python3-six (1.16.0-4) ... Removing libgfortran5:amd64 (12.2.0-9) ... Removing libpython3.11-stdlib:amd64 (3.11.0-3) ... Removing libpython3.11-minimal:amd64 (3.11.0-3) ... Removing libquadmath0:amd64 (12.2.0-9) ... Removing python3-pkg-resources (65.5.0-1) ... Removing python3-tz (2022.6-1) ... Removing python3 (3.10.6-3) ... Removing python3.10 (3.10.8-3) ... Removing libpython3-stdlib:amd64 (3.10.6-3) ... Removing libpython3.10-stdlib:amd64 (3.10.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncursesw6:amd64 (6.3+20220423-2) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing python3-minimal (3.10.6-3) ... Removing libreadline8:amd64 (8.2-1.2) ... Removing libsqlite3-0:amd64 (3.40.0-1) ... Removing media-types (8.0.0) ... Removing readline-common (8.2-1.2) ... Removing python3.10-minimal (3.10.8-3) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-1) ... Removing libkrb5-3:amd64 (1.20.1-1) ... Removing libk5crypto3:amd64 (1.20.1-1) ... Removing libkeyutils1:amd64 (1.6.3-1) ... Removing libkrb5support0:amd64 (1.20.1-1) ... Removing libpython3.10-minimal:amd64 (3.10.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libssl3:amd64 (3.0.7-1) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for libc-bin (2.36-6) ... 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', 'remove', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'media-types', 'python3', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-six', 'python3-tz', 'python3.10', 'python3.10-minimal', 'python3.11', 'python3.11-minimal', 'readline-common', 'python3-gtfparse'] 0m38.1s INFO: Running scripts post_remove 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_remove_exceptions'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_remove_exceptions'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg', '--purge', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'media-types', 'python3', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-six', 'python3-tz', 'python3.10', 'python3.10-minimal', 'python3.11', 'python3.11-minimal', 'readline-common'] 0m38.2s DUMP: dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed (Reading database ... 8608 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-1) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.10-minimal:amd64 (3.10.8-3) ... dpkg: warning: ignoring request to remove libpython3.10-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.0-3) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed Purging configuration files for media-types (8.0.0) ... Purging configuration files for python3 (3.10.6-3) ... dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3.10 which isn't installed Purging configuration files for python3.10-minimal (3.10.8-3) ... dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.0-3) ... Purging configuration files for readline-common (8.2-1.2) ... 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg', '--purge', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'media-types', 'python3', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-six', 'python3-tz', 'python3.10', 'python3.10-minimal', 'python3.11', 'python3.11-minimal', 'readline-common'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg', '--purge', 'python3-gtfparse'] 0m38.2s DUMP: dpkg: warning: ignoring request to remove python3-gtfparse which isn't installed 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg', '--purge', 'python3-gtfparse'] 0m38.2s INFO: Running scripts post_purge 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_purge_exceptions'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_purge_exceptions'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg', '--purge', '--pending'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg', '--purge', '--pending'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg', '--remove', '--pending'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg', '--remove', '--pending'] 0m38.2s INFO: Running scripts post_test 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_test_exceptions'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'tmp/scripts/post_test_exceptions'] 0m38.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m38.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg-divert', '--list'] 0m38.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'dpkg-divert', '--list'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', 'clean'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen', 'apt-get', 'clean'] 0m38.6s DEBUG: Recording chroot state 0m39.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/shm'] 0m39.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/shm'] 0m39.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/console'] 0m39.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/console'] 0m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/ptmx'] 0m39.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/ptmx'] 0m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/pts'] 0m39.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/dev/pts'] 0m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/proc'] 0m39.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen/proc'] 0m39.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m39.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpyj1iqwen'] 0m39.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpyj1iqwen 0m39.8s INFO: PASS: Upgrading between Debian distributions. 0m39.8s INFO: PASS: All tests. 0m39.8s INFO: piuparts run ends. ret=0 End: 2022-12-04 21:45:55 GMT