Start: 2026-11-09 07:56:34 GMT [testing] Package: python3-gtfparse Source: python-gtfparse Version: 1.3.0+ds-3 Installed-Size: 50 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-numpy, python3-pandas, python3:any Description: parser for gene transfer format (aka GFF2) Homepage: https://github.com/openvax/gtfparse Description-md5: b92d07db0ee12ea16a536214ed6a9b45 Section: science Priority: optional Filename: pool/main/p/python-gtfparse/python3-gtfparse_1.3.0+ds-3_all.deb Size: 10364 MD5sum: a69f75be8fbad968b56cf332ad8a0f5d SHA256: 5121371875c9c43548924896b6c8490d26387ff10097e17b343a9f52189ecab7 [sid] Package: python3-gtfparse Source: python-gtfparse Version: 3.1.0+ds-1 Installed-Size: 78 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-pandas (>= 2.3.3), python3-pyarrow (>= 18.0.0), python3:any Suggests: python3-polars (>= 0.20.31) Description: parser and writer for Gene Transfer Format files Homepage: https://github.com/openvax/gtfparse Description-md5: 9b22bcbfc3c95b5614c434a27cb926f8 Section: science Priority: optional Filename: pool/main/p/python-gtfparse/python3-gtfparse_3.1.0+ds-1_all.deb Size: 17740 MD5sum: aaf114ad2b18bd31ab762fd9df6eb12d SHA256: b3d761fec3a3104d04180fef29c3b79be0ca79c8b58c0685ee2b3953fb72b8ff Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-gtfparse=3.1.0+ds-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291514~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-gtfparse=3.1.0+ds-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.12.115+deb13.1-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.115-2 (2026-11-01) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpcdxwuzuo 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpcdxwuzuo 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpcdxwuzuo/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', 'update'] 0m2.9s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6705 kB] Fetched 17.0 MB in 2s (11.0 MB/s) Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', '-yf', 'dist-upgrade'] 0m4.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bash gcc-16-base libcap2 libgcc-s1 libstdc++6 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2546 kB of archives. After this operation, 2048 B disk space will be freed. Get:1 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-4+b1 [1581 kB] Get:2 http://deb.debian.org/debian forky/main amd64 gcc-16-base amd64 16.2.0-4 [39.3 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 16.2.0-4 [822 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 16.2.0-4 [74.1 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libcap2 amd64 1:2.78-1+b2 [28.9 kB] Fetched 2546 kB in 0s (21.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4956 files and directories currently installed.) Preparing to unpack .../bash_5.3-4+b1_amd64.deb ... Unpacking bash (5.3-4+b1) over (5.3-4) ... Setting up bash (5.3-4+b1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4957 files and directories currently installed.) Preparing to unpack .../gcc-16-base_16.2.0-4_amd64.deb ... Unpacking gcc-16-base:amd64 (16.2.0-4) over (16.2.0-3) ... Setting up gcc-16-base:amd64 (16.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4957 files and directories currently installed.) Preparing to unpack .../libstdc++6_16.2.0-4_amd64.deb ... Unpacking libstdc++6:amd64 (16.2.0-4) over (16.2.0-3) ... Setting up libstdc++6:amd64 (16.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4957 files and directories currently installed.) Preparing to unpack .../libgcc-s1_16.2.0-4_amd64.deb ... Unpacking libgcc-s1:amd64 (16.2.0-4) over (16.2.0-3) ... Setting up libgcc-s1:amd64 (16.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4957 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.78-1+b2_amd64.deb ... Unpacking libcap2:amd64 (1:2.78-1+b2) over (1:2.78-1+b1) ... Setting up libcap2:amd64 (1:2.78-1+b2) ... Processing triggers for debianutils (5.24) ... Processing triggers for libc-bin (2.43-7) ... 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', '-yf', 'dist-upgrade'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.7s DUMP: af9cc918dffbed2a9f5a5a14e386b31e - 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.7s INFO: Running scripts post_setup 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_forbid_home'] 0m5.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_forbid_home'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DUMP: install ok installed apt apt 3.3.6 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4+b1 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.12-0.3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-4 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.6 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1+b1 install ok installed libcap2:amd64 libcap2 1:2.78-1+b2 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-12 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.49-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b2 install ok installed libselinux1:amd64 libselinux1 3.11-2.1+b1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b2 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-7 install ok installed tzdata tzdata 2026f-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-4 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m5.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m6.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m6.0s INFO: Running scripts is_testable 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/is_testable_uninstallable'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/is_testable_uninstallable'] 0m6.0s INFO: Running scripts pre_test 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_test_root_password'] 0m6.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_test_root_password'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'show', '--no-all-versions', 'python3-gtfparse'] 0m6.2s DUMP: Package: python3-gtfparse Source: python-gtfparse Version: 1.3.0+ds-3 Installed-Size: 50 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-numpy, python3-pandas, python3:any Description-en: parser for gene transfer format (aka GFF2) You find a gene in the genome? Or a feature about it? The gene transfer format (GTF, identical to GFF2) allows your program or your database to exchange this information so it can be presented with genome browsers or used e.g. as a selection for other features like nucleotide variants. . This package provides a parser for GTF/GFF2 files, i.e. sets of routines that read that file and support the computational interpretation of these data. Description-md5: b92d07db0ee12ea16a536214ed6a9b45 Homepage: https://github.com/openvax/gtfparse Section: science Priority: optional Filename: pool/main/p/python-gtfparse/python3-gtfparse_1.3.0+ds-3_all.deb Size: 10364 MD5sum: a69f75be8fbad968b56cf332ad8a0f5d SHA256: 5121371875c9c43548924896b6c8490d26387ff10097e17b343a9f52189ecab7 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'show', '--no-all-versions', 'python3-gtfparse'] 0m6.2s INFO: apt-cache knows about the following packages: python3-gtfparse 0m6.2s INFO: Running scripts pre_install 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_extras'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_extras'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy'] 0m6.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy', 'python3-gtfparse'] 0m6.4s DUMP: python3-gtfparse: Installed: (none) Candidate: 1.3.0+ds-3 Version table: 1.3.0+ds-3 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy', 'python3-gtfparse'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', '-y', 'install', 'python3-gtfparse'] 0m22.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: libblas3 libexpat1 libffi8 libgfortran5 liblapack3 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 media-types netbase python3 python3-dateutil python3-minimal python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pytz python3.14 python3.14-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python3.14-venv python3.14-doc binutils binfmt-support readline-doc Recommended packages: libgpm2 python3-scipy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba ca-certificates The following NEW packages will be installed: libblas3 libexpat1 libffi8 libgfortran5 liblapack3 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 media-types netbase python3 python3-dateutil python3-gtfparse python3-minimal python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pytz python3.14 python3.14-minimal readline-common 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. Need to get 28.1 MB of archives. After this operation, 152 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.10.0-1 [135 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libpython3.14-minimal amd64 3.14.10-1 [905 kB] Get:3 http://deb.debian.org/debian forky/main amd64 python3.14-minimal amd64 3.14.10-1 [2734 kB] Get:4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:5 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get:6 http://deb.debian.org/debian forky/main amd64 netbase all 6.6 [10.3 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-4 [74.8 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libpython3.14-stdlib amd64 3.14.10-1 [2360 kB] Get:13 http://deb.debian.org/debian forky/main amd64 python3.14 amd64 3.14.10-1 [884 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:15 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:16 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-5+b1 [137 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:18 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 16.2.0-4 [877 kB] Get:19 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:20 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.4.6+ds-5+b1 [7252 kB] Get:21 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:22 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2026.6-1 [34.6 kB] Get:23 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-6 [5515 kB] Get:24 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.3.3+dfsg-6 [2930 kB] Get:25 http://deb.debian.org/debian forky/main amd64 python3-gtfparse all 1.3.0+ds-3 [10.4 kB] Fetched 28.1 MB in 2s (13.8 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4961 files and directories currently installed.) Preparing to unpack .../libexpat1_2.10.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.10.0-1) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.10-1_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.10-1) ... Selecting previously unselected package python3.14-minimal. Preparing to unpack .../python3.14-minimal_3.14.10-1_amd64.deb ... Unpacking python3.14-minimal (3.14.10-1) ... Setting up libpython3.14-minimal:amd64 (3.14.10-1) ... Setting up libexpat1:amd64 (2.10.0-1) ... Setting up python3.14-minimal (3.14.10-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5317 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.14.7-3_amd64.deb ... Unpacking python3-minimal (3.14.7-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../06-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../08-libpython3.14-stdlib_3.14.10-1_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.10-1) ... Selecting previously unselected package python3.14. Preparing to unpack .../09-python3.14_3.14.10-1_amd64.deb ... Unpacking python3.14 (3.14.10-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../10-libpython3-stdlib_3.14.7-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3-minimal (3.14.7-3) ... Selecting previously unselected package python3. (Reading database ... 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Unpacking libblas3:amd64 (3.12.1-8) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../03-libgfortran5_16.2.0-4_amd64.deb ... Unpacking libgfortran5:amd64 (16.2.0-4) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../04-liblapack3_3.12.1-8_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-8) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../05-python3-numpy_1%3a2.4.6+ds-5+b1_amd64.deb ... Unpacking python3-numpy (1:2.4.6+ds-5+b1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../06-python3-dateutil_2.9.0-5_all.deb ... Unpacking python3-dateutil (2.9.0-5) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../07-python3-pytz_2026.6-1_all.deb ... Unpacking python3-pytz (2026.6-1) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../08-python3-pandas-lib_2.3.3+dfsg-6_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-6) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../09-python3-pandas_2.3.3+dfsg-6_all.deb ... Unpacking python3-pandas (2.3.3+dfsg-6) ... Selecting previously unselected package python3-gtfparse. Preparing to unpack .../10-python3-gtfparse_1.3.0+ds-3_all.deb ... Unpacking python3-gtfparse (1.3.0+ds-3) ... Setting up media-types (14.0.0) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up python3-numpy-dev:amd64 (1:2.4.6+ds-5+b1) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libgfortran5:amd64 (16.2.0-4) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up netbase (6.6) ... Setting up readline-common (8.3-4) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libpython3.14-stdlib:amd64 (3.14.10-1) ... Setting up python3.14 (3.14.10-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3 (3.14.7-3) ... Setting up python3-numpy (1:2.4.6+ds-5+b1) ... Setting up python3-dateutil (2.9.0-5) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-6) ... Setting up python3-pytz (2026.6-1) ... Setting up python3-pandas (2.3.3+dfsg-6) ... Setting up python3-gtfparse (1.3.0+ds-3) ... Processing triggers for libc-bin (2.43-7) ... 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', '-y', 'install', 'python3-gtfparse'] 0m22.4s INFO: Running scripts post_install 0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_install_exceptions'] 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_install_exceptions'] 0m22.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m23.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m23.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpcdxwuzuo to sid 0m23.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m23.1s INFO: Running scripts pre_distupgrade 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_distupgrade_exceptions'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_distupgrade_exceptions'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', 'update'] 0m27.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.9 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7784 kB] Fetched 18.8 MB in 3s (6381 kB/s) Reading package lists... 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', 'update'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', '-yf', 'dist-upgrade'] 0m38.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libabsl20260526 libarrow-acero2500 libarrow-dataset2500 libarrow-flight2500 libarrow2500 libbrotli1 libcares2 libedit2 libgandiva2500 libgrpc++1.51t64 libgrpc29t64 libllvm21 libmimalloc3 libparquet2500 libprotobuf32t64 libprotoc32t64 libre2-11 libsnappy1v5 libthrift-0.24.0 libutf8proc3 libxml2-16 libz3-4 python3-pyarrow The following packages will be upgraded: apt libapt-pkg7.0 libaudit-common libaudit1 libpython3-stdlib libsqlite3-0 libsystemd0 libudev1 python3 python3-dateutil python3-gtfparse python3-minimal sysvinit-utils 13 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 65.9 MB of archives. After this operation, 266 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.18-2 [29.9 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 262.2-1 [513 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 262.2-1 [149 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.3.7 [1293 kB] Get:5 http://deb.debian.org/debian sid/main amd64 apt amd64 3.3.7 [1580 kB] Get:6 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.14.8-1 [25.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.14.8-1 [26.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.14.8-1 [8520 B] Get:9 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1+b1 [59.9 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libabsl20260526 amd64 20260526.0-2+b1 [584 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-4.1 [325 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libmimalloc3 amd64 3.6.1+ds-1 [99.2 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libre2-11 amd64 20251105-1+b3 [176 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.3.1-4 [32.2 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libutf8proc3 amd64 2.11.3-2 [61.3 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libarrow2500 amd64 25.0.0-2+b1 [6805 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libarrow-acero2500 amd64 25.0.0-2+b1 [890 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libthrift-0.24.0 amd64 0.24.0-3 [437 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libparquet2500 amd64 25.0.0-2+b1 [1528 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libarrow-dataset2500 amd64 25.0.0-2+b1 [861 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libcares2 amd64 1.34.9-1 [110 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libprotobuf32t64 amd64 3.21.12-17 [1089 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libprotoc32t64 amd64 3.21.12-17 [1045 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgrpc29t64 amd64 1.51.1-10+b1 [3000 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libgrpc++1.51t64 amd64 1.51.1-10+b1 [526 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libarrow-flight2500 amd64 25.0.0-2+b1 [739 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20260512-1 [93.6 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.4+dfsg-1+b1 [684 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.13.3-1.1 [8644 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libllvm21 amd64 1:21.1.8-14 [28.3 MB] Get:32 http://deb.debian.org/debian sid/main amd64 libgandiva2500 amd64 25.0.0-2+b1 [1066 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.54.1-2 [1020 kB] Get:34 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 4.0.0-1 [90.7 kB] Get:35 http://deb.debian.org/debian sid/main amd64 python3-pyarrow amd64 25.0.0-2+b1 [3982 kB] Get:36 http://deb.debian.org/debian sid/main amd64 python3-gtfparse all 3.1.0+ds-1 [17.7 kB] Fetched 65.9 MB in 5s (12.8 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8708 files and directories currently installed.) Preparing to unpack .../python3_3.14.8-1_amd64.deb ... Unpacking python3 (3.14.8-1) over (3.14.7-3) ... Preparing to unpack .../libpython3-stdlib_3.14.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.14.8-1) over (3.14.7-3) ... Preparing to unpack .../libaudit-common_1%3a4.2.1-1_all.deb ... Unpacking libaudit-common (1:4.2.1-1) over (1:4.1.2-1) ... Setting up libaudit-common (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8708 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.2.1-1+b1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.2.1-1+b1) over (1:4.1.2-1+b2) ... Setting up libaudit1:amd64 (1:4.2.1-1+b1) ... Selecting previously unselected package libabsl20260526:amd64. (Reading database ... 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Selecting previously unselected package libthrift-0.24.0:amd64. Preparing to unpack .../08-libthrift-0.24.0_0.24.0-3_amd64.deb ... Unpacking libthrift-0.24.0:amd64 (0.24.0-3) ... Selecting previously unselected package libparquet2500:amd64. Preparing to unpack .../09-libparquet2500_25.0.0-2+b1_amd64.deb ... Unpacking libparquet2500:amd64 (25.0.0-2+b1) ... Selecting previously unselected package libarrow-dataset2500:amd64. Preparing to unpack .../10-libarrow-dataset2500_25.0.0-2+b1_amd64.deb ... Unpacking libarrow-dataset2500:amd64 (25.0.0-2+b1) ... Selecting previously unselected package libcares2:amd64. Preparing to unpack .../11-libcares2_1.34.9-1_amd64.deb ... Unpacking libcares2:amd64 (1.34.9-1) ... Selecting previously unselected package libprotobuf32t64:amd64. Preparing to unpack .../12-libprotobuf32t64_3.21.12-17_amd64.deb ... Unpacking libprotobuf32t64:amd64 (3.21.12-17) ... Selecting previously unselected package libprotoc32t64:amd64. 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Preparing to unpack .../25-python3-gtfparse_3.1.0+ds-1_all.deb ... Unpacking python3-gtfparse (3.1.0+ds-1) over (1.3.0+ds-3) ... Setting up libprotobuf32t64:amd64 (3.21.12-17) ... Setting up libmimalloc3:amd64 (3.6.1+ds-1) ... Setting up libutf8proc3:amd64 (2.11.3-2) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1+b1) ... Setting up libbrotli1:amd64 (1.2.0-4.1) ... Setting up libedit2:amd64 (3.1-20260512-1) ... Setting up libsqlite3-0:amd64 (3.54.1-2) ... Setting up libthrift-0.24.0:amd64 (0.24.0-3) ... Setting up libsnappy1v5:amd64 (1.3.1-4) ... Setting up libz3-4:amd64 (4.13.3-1.1) ... Setting up libabsl20260526:amd64 (20260526.0-2+b1) ... Setting up libllvm21:amd64 (1:21.1.8-14) ... Setting up libcares2:amd64 (1.34.9-1) ... Setting up libprotoc32t64:amd64 (3.21.12-17) ... Setting up libpython3-stdlib:amd64 (3.14.8-1) ... Setting up libre2-11:amd64 (20251105-1+b3) ... Setting up python3 (3.14.8-1) ... Setting up libgrpc29t64:amd64 (1.51.1-10+b1) ... Setting up libarrow2500:amd64 (25.0.0-2+b1) ... Setting up python3-dateutil (4.0.0-1) ... Setting up libgandiva2500:amd64 (25.0.0-2+b1) ... Setting up libgrpc++1.51t64:amd64 (1.51.1-10+b1) ... Setting up libarrow-acero2500:amd64 (25.0.0-2+b1) ... Setting up libparquet2500:amd64 (25.0.0-2+b1) ... Setting up libarrow-dataset2500:amd64 (25.0.0-2+b1) ... Setting up libarrow-flight2500:amd64 (25.0.0-2+b1) ... Setting up python3-pyarrow (25.0.0-2+b1) ... Setting up python3-gtfparse (3.1.0+ds-1) ... Processing triggers for libc-bin (2.43-7) ... 0m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', '-yf', 'dist-upgrade'] 0m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m40.3s DUMP: c0863632568862736e3f0793944071fc - 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'show', '--no-all-versions', 'python3-gtfparse'] 0m40.5s DUMP: Package: python3-gtfparse Source: python-gtfparse Version: 3.1.0+ds-1 Installed-Size: 78 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-pandas (>= 2.3.3), python3-pyarrow (>= 18.0.0), python3:any Suggests: python3-polars (>= 0.20.31) Description-en: parser and writer for Gene Transfer Format files Gene Transfer Format (GTF, also known as GFF2) describes genomic features such as genes, transcripts and exons. It is used to exchange annotations between databases, analysis tools and genome browsers. . This package reads GTF annotations into pandas data frames or dictionaries and writes data frames back to GTF, including gzip-compressed files. Polars data frames are supported when python3-polars is installed. Description-md5: 9b22bcbfc3c95b5614c434a27cb926f8 Homepage: https://github.com/openvax/gtfparse Section: science Priority: optional Filename: pool/main/p/python-gtfparse/python3-gtfparse_3.1.0+ds-1_all.deb Size: 17740 MD5sum: aaf114ad2b18bd31ab762fd9df6eb12d SHA256: b3d761fec3a3104d04180fef29c3b79be0ca79c8b58c0685ee2b3953fb72b8ff 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'show', '--no-all-versions', 'python3-gtfparse'] 0m40.5s INFO: apt-cache knows about the following packages: python3-gtfparse 0m40.5s INFO: Running scripts pre_install 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_database-server'] 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_database-server'] 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_exceptions'] 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_exceptions'] 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_extras'] 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_extras'] 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture'] 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture'] 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy'] 0m40.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy', 'python3-gtfparse'] 0m40.6s DUMP: python3-gtfparse: Installed: 3.1.0+ds-1 Candidate: 3.1.0+ds-1 Version table: *** 3.1.0+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2.9.1+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy', 'python3-gtfparse'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', '-y', 'install', 'python3-gtfparse'] 0m41.1s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-gtfparse is already the newest version (3.1.0+ds-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', '-y', 'install', 'python3-gtfparse'] 0m41.1s INFO: Running scripts post_install 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_install_exceptions'] 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_install_exceptions'] 0m41.1s INFO: Running scripts post_distupgrade 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_distupgrade_exceptions'] 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_distupgrade_exceptions'] 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_distupgrade_zz_backports'] 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_distupgrade_zz_backports'] 0m41.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m41.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m41.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m42.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m42.6s INFO: Running scripts pre_install 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_database-server'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_database-server'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_exceptions'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_exceptions'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_extras'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_extras'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy'] 0m42.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m42.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy'] 0m42.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy', 'python3-gtfparse'] 0m42.7s DUMP: python3-gtfparse: Installed: 3.1.0+ds-1 Candidate: 3.1.0+ds-1 Version table: *** 3.1.0+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2.9.1+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m42.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-cache', 'policy', 'python3-gtfparse'] 0m42.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', '-y', 'install', 'python3-gtfparse=3.1.0+ds-1'] 0m43.3s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-gtfparse is already the newest version (3.1.0+ds-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', '-y', 'install', 'python3-gtfparse=3.1.0+ds-1'] 0m43.3s INFO: Running scripts post_install 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_install_exceptions'] 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_install_exceptions'] 0m43.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m44.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m44.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', '-ac', '--ignore-obsolete'] 0m46.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', '-ac', '--ignore-obsolete'] 0m46.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m46.8s DUMP: 0.17.5+b5 0m46.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m46.8s INFO: Running adequate version 0.17.5+b5 now. 0m46.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'python3-gtfparse'] 0m46.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'python3-gtfparse'] 0m46.8s INFO: Running scripts pre_remove 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m49.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m49.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_exceptions'] 0m49.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/pre_remove_exceptions'] 0m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m49.5s DUMP: install ok installed apt apt 3.3.7 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4+b1 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.12-0.3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-4 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libabsl20260526:amd64 libabsl20260526 20260526.0-2+b1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.7 install ok installed libarrow-acero2500:amd64 libarrow-acero2500 25.0.0-2+b1 install ok installed libarrow-dataset2500:amd64 libarrow-dataset2500 25.0.0-2+b1 install ok installed libarrow-flight2500:amd64 libarrow-flight2500 25.0.0-2+b1 install ok installed libarrow2500:amd64 libarrow2500 25.0.0-2+b1 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1+b1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-4.1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1+b1 install ok installed libcap2:amd64 libcap2 1:2.78-1+b2 install ok installed libcares2:amd64 libcares2 1.34.9-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-12 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libedit2:amd64 libedit2 3.1-20260512-1 install ok installed libexpat1:amd64 libexpat1 2.10.0-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libgandiva2500:amd64 libgandiva2500 25.0.0-2+b1 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-4 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgrpc++1.51t64:amd64 libgrpc++1.51t64 1.51.1-10+b1 install ok installed libgrpc29t64:amd64 libgrpc29t64 1.51.1-10+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed libllvm21:amd64 libllvm21 1:21.1.8-14 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmimalloc3:amd64 libmimalloc3 3.6.1+ds-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libparquet2500:amd64 libparquet2500 25.0.0-2+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.49-1 install ok installed libprotobuf32t64:amd64 libprotobuf32t64 3.21.12-17 install ok installed libprotoc32t64:amd64 libprotoc32t64 3.21.12-17 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.8-1 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.10-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.10-1 install ok installed libre2-11:amd64 libre2-11 20251105-1+b3 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b2 install ok installed libselinux1:amd64 libselinux1 3.11-2.1+b1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b2 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.3.1-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.54.1-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 262.2-1 install ok installed libthrift-0.24.0:amd64 libthrift-0.24.0 0.24.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262.2-1 install ok installed libutf8proc3:amd64 libutf8proc3 2.11.3-2 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxml2-16:amd64 libxml2-16 2.15.4+dfsg-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1.1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed python3 python3 3.14.8-1 install ok installed python3-dateutil python3-dateutil 4.0.0-1 install ok installed python3-gtfparse python3-gtfparse 3.1.0+ds-1 install ok installed python3-minimal python3-minimal 3.14.8-1 install ok installed python3-numpy python3-numpy 1:2.4.6+ds-5+b1 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.4.6+ds-5+b1 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-6 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-6 install ok installed python3-pyarrow python3-pyarrow 25.0.0-2+b1 install ok installed python3-pytz python3-pytz 2026.6-1 install ok installed python3.14 python3.14 3.14.10-1 install ok installed python3.14-minimal python3.14-minimal 3.14.10-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-2 install ok installed tar tar 1.35+dfsg-7 install ok installed tzdata tzdata 2026f-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-4 0m49.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', 'remove', '--allow-remove-essential', 'libabsl20260526:amd64', 'libarrow-acero2500:amd64', 'libarrow-dataset2500:amd64', 'libarrow-flight2500:amd64', 'libarrow2500:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcares2:amd64', 'libedit2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgandiva2500:amd64', 'libgfortran5:amd64', 'libgrpc++1.51t64:amd64', 'libgrpc29t64:amd64', 'liblapack3:amd64', 'libllvm21:amd64', 'libmimalloc3:amd64', 'libncursesw6:amd64', 'libparquet2500:amd64', 'libprotobuf32t64:amd64', 'libprotoc32t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libre2-11:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libthrift-0.24.0:amd64', 'libutf8proc3:amd64', 'libxml2-16:amd64', 'libz3-4:amd64', 'media-types', 'netbase', 'python3', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pyarrow', 'python3-pytz', 'python3.14', 'python3.14-minimal', 'readline-common', 'python3-gtfparse'] 0m52.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: libabsl20260526 libarrow-acero2500 libarrow-dataset2500 libarrow-flight2500 libarrow2500 libblas3 libbrotli1 libcares2 libedit2 libexpat1 libffi8 libgandiva2500 libgfortran5 libgrpc++1.51t64 libgrpc29t64 liblapack3 libllvm21 libmimalloc3 libncursesw6 libparquet2500 libprotobuf32t64 libprotoc32t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libre2-11 libreadline8t64 libsnappy1v5 libsqlite3-0 libthrift-0.24.0 libutf8proc3 libxml2-16 libz3-4 media-types netbase python3 python3-dateutil python3-gtfparse python3-minimal python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pyarrow python3-pytz python3.14 python3.14-minimal readline-common 0 upgraded, 0 newly installed, 48 to remove and 0 not upgraded. After this operation, 417 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9312 files and directories currently installed.) Removing python3-gtfparse (3.1.0+ds-1) ... Removing python3-pyarrow (25.0.0-2+b1) ... Removing libarrow-dataset2500:amd64 (25.0.0-2+b1) ... Removing libparquet2500:amd64 (25.0.0-2+b1) ... Removing libarrow-flight2500:amd64 (25.0.0-2+b1) ... Removing libgrpc++1.51t64:amd64 (1.51.1-10+b1) ... Removing libgrpc29t64:amd64 (1.51.1-10+b1) ... Removing libarrow-acero2500:amd64 (25.0.0-2+b1) ... Removing python3-pandas (2.3.3+dfsg-6) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-6) ... Removing python3-numpy (1:2.4.6+ds-5+b1) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libcares2:amd64 (1.34.9-1) ... Removing libgandiva2500:amd64 (25.0.0-2+b1) ... Removing libllvm21:amd64 (1:21.1.8-14) ... Removing libedit2:amd64 (3.1-20260512-1) ... Removing python3-pytz (2026.6-1) ... Removing python3-dateutil (4.0.0-1) ... Removing python3 (3.14.8-1) ... Removing python3.14 (3.14.10-1) ... Removing python3-minimal (3.14.8-1) ... Removing python3.14-minimal (3.14.10-1) ... Removing libexpat1:amd64 (2.10.0-1) ... Removing libpython3-stdlib:amd64 (3.14.8-1) ... Removing libpython3.14-stdlib:amd64 (3.14.10-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing libgfortran5:amd64 (16.2.0-4) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libprotoc32t64:amd64 (3.21.12-17) ... Removing libprotobuf32t64:amd64 (3.21.12-17) ... Removing libpython3.14-minimal:amd64 (3.14.10-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.54.1-2) ... Removing libthrift-0.24.0:amd64 (0.24.0-3) ... Removing libxml2-16:amd64 (2.15.4+dfsg-1+b1) ... Removing libz3-4:amd64 (4.13.3-1.1) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing python3-numpy-dev:amd64 (1:2.4.6+ds-5+b1) ... Removing readline-common (8.3-4) ... Removing libarrow2500:amd64 (25.0.0-2+b1) ... Removing libre2-11:amd64 (20251105-1+b3) ... Removing libabsl20260526:amd64 (20260526.0-2+b1) ... Removing libbrotli1:amd64 (1.2.0-4.1) ... Removing libmimalloc3:amd64 (3.6.1+ds-1) ... Removing libsnappy1v5:amd64 (1.3.1-4) ... Removing libutf8proc3:amd64 (2.11.3-2) ... Processing triggers for libc-bin (2.43-7) ... 0m52.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', 'remove', '--allow-remove-essential', 'libabsl20260526:amd64', 'libarrow-acero2500:amd64', 'libarrow-dataset2500:amd64', 'libarrow-flight2500:amd64', 'libarrow2500:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcares2:amd64', 'libedit2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgandiva2500:amd64', 'libgfortran5:amd64', 'libgrpc++1.51t64:amd64', 'libgrpc29t64:amd64', 'liblapack3:amd64', 'libllvm21:amd64', 'libmimalloc3:amd64', 'libncursesw6:amd64', 'libparquet2500:amd64', 'libprotobuf32t64:amd64', 'libprotoc32t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libre2-11:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libthrift-0.24.0:amd64', 'libutf8proc3:amd64', 'libxml2-16:amd64', 'libz3-4:amd64', 'media-types', 'netbase', 'python3', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pyarrow', 'python3-pytz', 'python3.14', 'python3.14-minimal', 'readline-common', 'python3-gtfparse'] 0m52.0s INFO: Running scripts post_remove 0m52.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_remove_exceptions'] 0m52.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_remove_exceptions'] 0m52.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg', '--purge', 'libabsl20260526:amd64', 'libarrow-acero2500:amd64', 'libarrow-dataset2500:amd64', 'libarrow-flight2500:amd64', 'libarrow2500:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcares2:amd64', 'libedit2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgandiva2500:amd64', 'libgfortran5:amd64', 'libgrpc++1.51t64:amd64', 'libgrpc29t64:amd64', 'liblapack3:amd64', 'libllvm21:amd64', 'libmimalloc3:amd64', 'libncursesw6:amd64', 'libparquet2500:amd64', 'libprotobuf32t64:amd64', 'libprotoc32t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libre2-11:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libthrift-0.24.0:amd64', 'libutf8proc3:amd64', 'libxml2-16:amd64', 'libz3-4:amd64', 'media-types', 'netbase', 'python3', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pyarrow', 'python3-pytz', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m52.1s DUMP: dpkg: warning: ignoring request to remove libabsl20260526 which is not installed dpkg: warning: ignoring request to remove libarrow-acero2500 which is not installed dpkg: warning: ignoring request to remove libarrow-dataset2500 which is not installed dpkg: warning: ignoring request to remove libarrow-flight2500 which is not installed dpkg: warning: ignoring request to remove libarrow2500 which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libcares2 which is not installed dpkg: warning: ignoring request to remove libedit2 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgandiva2500 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgrpc++1.51t64 which is not installed dpkg: warning: ignoring request to remove libgrpc29t64 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove libllvm21 which is not installed dpkg: warning: ignoring request to remove libmimalloc3 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libparquet2500 which is not installed dpkg: warning: ignoring request to remove libprotobuf32t64 which is not installed dpkg: warning: ignoring request to remove libprotoc32t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed (Reading database ... 4968 files and directories currently installed.) Purging configuration files for libpython3.14-minimal:amd64 (3.14.10-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove libre2-11 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsnappy1v5 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libthrift-0.24.0 which is not installed dpkg: warning: ignoring request to remove libutf8proc3 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libz3-4 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.6) ... Purging configuration files for python3 (3.14.8-1) ... dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed Purging configuration files for python3-numpy (1:2.4.6+ds-5+b1) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-pandas which is not installed dpkg: warning: ignoring request to remove python3-pandas-lib which is not installed dpkg: warning: ignoring request to remove python3-pyarrow which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.10-1) ... Purging configuration files for readline-common (8.3-4) ... 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg', '--purge', 'libabsl20260526:amd64', 'libarrow-acero2500:amd64', 'libarrow-dataset2500:amd64', 'libarrow-flight2500:amd64', 'libarrow2500:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcares2:amd64', 'libedit2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgandiva2500:amd64', 'libgfortran5:amd64', 'libgrpc++1.51t64:amd64', 'libgrpc29t64:amd64', 'liblapack3:amd64', 'libllvm21:amd64', 'libmimalloc3:amd64', 'libncursesw6:amd64', 'libparquet2500:amd64', 'libprotobuf32t64:amd64', 'libprotoc32t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libre2-11:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libthrift-0.24.0:amd64', 'libutf8proc3:amd64', 'libxml2-16:amd64', 'libz3-4:amd64', 'media-types', 'netbase', 'python3', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pyarrow', 'python3-pytz', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg', '--purge', 'python3-gtfparse'] 0m52.1s DUMP: dpkg: warning: ignoring request to remove python3-gtfparse which is not installed 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg', '--purge', 'python3-gtfparse'] 0m52.1s INFO: Running scripts post_purge 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_purge_exceptions'] 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_purge_exceptions'] 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg', '--purge', '--pending'] 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg', '--purge', '--pending'] 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg', '--remove', '--pending'] 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg', '--remove', '--pending'] 0m52.1s INFO: Running scripts post_test 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_test_exceptions'] 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'tmp/scripts/post_test_exceptions'] 0m52.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m52.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg-divert', '--list'] 0m52.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'dpkg-divert', '--list'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', 'clean'] 0m52.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo', 'apt-get', 'clean'] 0m52.6s DEBUG: Recording chroot state 0m53.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/shm'] 0m53.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/shm'] 0m53.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/console'] 0m53.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/console'] 0m53.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/ptmx'] 0m53.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/ptmx'] 0m53.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/pts'] 0m53.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/dev/pts'] 0m53.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/proc'] 0m53.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo/proc'] 0m53.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m54.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpcdxwuzuo'] 0m54.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpcdxwuzuo 0m54.0s INFO: PASS: Upgrading between Debian distributions. 0m54.0s INFO: PASS: All tests. 0m54.0s INFO: piuparts run ends. ret=0 End: 2026-11-09 07:57:28 GMT