Start: 2025-04-10 09:52:35 GMT
[testing]
Package: python3-ngs
Source: sra-sdk
Version: 3.0.9+dfsg-7.1
Installed-Size: 215
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Depends: python3:any, libncbi-ngs3 (>= 3.0.9+dfsg-7.1), libncbi-ngs3 (<< 3.0.9+dfsg-7.1.1~)
Description: Next Generation Sequencing language Bindings (Python3 bindings)
Homepage: https://github.com/ncbi/sra-tools/
Description-md5: 339536e9adbe8549aa1efd268c2ee905
Section: python
Priority: optional
Filename: pool/main/s/sra-sdk/python3-ngs_3.0.9+dfsg-7.1_all.deb
Size: 44544
MD5sum: cbd1bde518ac76a8941488843073d4f8
SHA256: 60fa3dd745a27ae8c07d8e90205e2210da0962793082f0951f9aff93d1651362
[sid]
Package: python3-ngs
Source: sra-sdk
Version: 3.2.1+dfsg-3
Installed-Size: 217
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Depends: python3:any, libncbi-ngs3 (>= 3.2.1+dfsg-3), libncbi-ngs3 (<< 3.2.1+dfsg-3.1~)
Description: Next Generation Sequencing language Bindings (Python3 bindings)
Homepage: https://github.com/ncbi/sra-tools/
Description-md5: 339536e9adbe8549aa1efd268c2ee905
Section: python
Priority: optional
Filename: pool/main/s/sra-sdk/python3-ngs_3.2.1+dfsg-3_all.deb
Size: 46512
MD5sum: b8875a1598335259f6096771e08154c0
SHA256: 86f6a9b4c25cdf716807e5a97f0601d4a0baf99ec47a4926dbcfc7b5a8d7da4b
Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-ngs=3.2.1+dfsg-3
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up.
0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-ngs=3.2.1+dfsg-3
0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmppak93c8l
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmppak93c8l
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppak93c8l', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz']
0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppak93c8l', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz']
0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppak93c8l/proc']
0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppak93c8l/proc']
0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/pts']
0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/pts']
0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/ptmx']
0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/ptmx']
0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/console']
0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/console']
0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/shm']
0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/shm']
0m0.2s DEBUG: sources.list:
deb http://deb.debian.org/debian/ trixie main
0m0.2s DEBUG: Created policy-rc.d and chmodded it.
0m0.2s DEBUG: Created resolv.conf.
0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmppak93c8l/tmp/scripts/
0m0.2s INFO: Running scripts post_chroot_unpack
0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', 'update']
0m1.5s DUMP:
Get:1 http://deb.debian.org/debian trixie InRelease [175 kB]
Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9652 kB]
Get:3 http://deb.debian.org/debian trixie/main Translation-en [6475 kB]
Fetched 16.3 MB in 1s (20.6 MB/s)
Reading package lists...
0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', 'update']
0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', '-yf', 'dist-upgrade']
0m2.8s DUMP:
Reading package lists...
Building dependency tree...
Calculating upgrade...
The following NEW packages will be installed:
liblastlog2-2 libsqlite3-0
The following packages will be upgraded:
apt bsdutils libapt-pkg7.0 libblkid1 liblzma5 libmount1 libsmartcols1
libsystemd0 libudev1 libuuid1 login login.defs mount passwd sqv util-linux
16 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 8663 kB of archives.
After this operation, 2414 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.41-3 [110 kB]
Get:2 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB]
Get:3 http://deb.debian.org/debian trixie/main amd64 liblastlog2-2 amd64 2.41-3 [28.3 kB]
Get:4 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.41-3 [37.5 kB]
Get:5 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.41-3 [171 kB]
Get:6 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.41-3 [208 kB]
Get:7 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.41-3 [142 kB]
Get:8 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.41-3 [1231 kB]
Get:9 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.41-3 [162 kB]
Get:10 http://deb.debian.org/debian trixie/main amd64 liblzma5 amd64 5.8.1-1 [309 kB]
Get:11 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257.5-2 [453 kB]
Get:12 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257.5-2 [151 kB]
Get:13 http://deb.debian.org/debian trixie/main amd64 libapt-pkg7.0 amd64 3.0.0 [1112 kB]
Get:14 http://deb.debian.org/debian trixie/main amd64 sqv amd64 1.3.0-1 [661 kB]
Get:15 http://deb.debian.org/debian trixie/main amd64 apt amd64 3.0.0 [1450 kB]
Get:16 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.41-3 [112 kB]
Get:17 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.17.4-1 [186 kB]
Get:18 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.17.4-1 [1226 kB]
Fetched 8663 kB in 0s (163 MB/s)
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Preparing to unpack .../bsdutils_1%3a2.41-3_amd64.deb ...
Unpacking bsdutils (1:2.41-3) over (1:2.40.4-5) ...
Setting up bsdutils (1:2.41-3) ...
Selecting previously unselected package libsqlite3-0:amd64.
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Unpacking libsqlite3-0:amd64 (3.46.1-2) ...
Setting up libsqlite3-0:amd64 (3.46.1-2) ...
Selecting previously unselected package liblastlog2-2:amd64.
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Setting up liblastlog2-2:amd64 (2.41-3) ...
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Preparing to unpack .../libuuid1_2.41-3_amd64.deb ...
Unpacking libuuid1:amd64 (2.41-3) over (2.40.4-5) ...
Setting up libuuid1:amd64 (2.41-3) ...
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Preparing to unpack .../libblkid1_2.41-3_amd64.deb ...
Unpacking libblkid1:amd64 (2.41-3) over (2.40.4-5) ...
Setting up libblkid1:amd64 (2.41-3) ...
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Preparing to unpack .../libmount1_2.41-3_amd64.deb ...
Unpacking libmount1:amd64 (2.41-3) over (2.40.4-5) ...
Setting up libmount1:amd64 (2.41-3) ...
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Setting up libsmartcols1:amd64 (2.41-3) ...
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Setting up util-linux (2.41-3) ...
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Preparing to unpack .../mount_2.41-3_amd64.deb ...
Unpacking mount (2.41-3) over (2.40.4-5) ...
Preparing to unpack .../liblzma5_5.8.1-1_amd64.deb ...
Unpacking liblzma5:amd64 (5.8.1-1) over (5.6.4-1) ...
Setting up liblzma5:amd64 (5.8.1-1) ...
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Preparing to unpack .../libsystemd0_257.5-2_amd64.deb ...
Unpacking libsystemd0:amd64 (257.5-2) over (257.4-3) ...
Setting up libsystemd0:amd64 (257.5-2) ...
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Preparing to unpack .../libudev1_257.5-2_amd64.deb ...
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Setting up libudev1:amd64 (257.5-2) ...
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Preparing to unpack .../libapt-pkg7.0_3.0.0_amd64.deb ...
Unpacking libapt-pkg7.0:amd64 (3.0.0) over (2.9.35) ...
Setting up libapt-pkg7.0:amd64 (3.0.0) ...
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Preparing to unpack .../archives/sqv_1.3.0-1_amd64.deb ...
Unpacking sqv (1.3.0-1) over (1.2.1-6+b1) ...
Setting up sqv (1.3.0-1) ...
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Preparing to unpack .../archives/apt_3.0.0_amd64.deb ...
Unpacking apt (3.0.0) over (2.9.35) ...
Setting up apt (3.0.0) ...
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Preparing to unpack .../login_1%3a4.16.0-2+really2.41-3_amd64.deb ...
Unpacking login (1:4.16.0-2+really2.41-3) over (1:4.16.0-2+really2.40.4-5) ...
Preparing to unpack .../login.defs_1%3a4.17.4-1_all.deb ...
Unpacking login.defs (1:4.17.4-1) over (1:4.17.3-3) ...
Preparing to unpack .../passwd_1%3a4.17.4-1_amd64.deb ...
Unpacking passwd (1:4.17.4-1) over (1:4.17.3-3) ...
Setting up login.defs (1:4.17.4-1) ...
Setting up passwd (1:4.17.4-1) ...
Setting up mount (2.41-3) ...
Setting up login (1:4.16.0-2+really2.41-3) ...
Processing triggers for libc-bin (2.41-6) ...
0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', '-yf', 'dist-upgrade']
0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m3.4s DUMP:
1855a7e2635bf22bb481caf465d80851 -
0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m3.4s INFO: Running scripts post_setup
0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_dummy_users']
0m3.8s DUMP:
useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999
useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999
useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999
useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999
useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999
useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999
useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999
useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999
useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999
useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999
useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_dummy_users']
0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_forbid_home']
0m3.8s DUMP:
Disabling /home
Adding 'local diversion of /home to /home.distrib'
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_forbid_home']
0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_force-unsafe-io']
0m3.8s DUMP:
Enabling dpkg --force-unsafe-io.
Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib'
Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged'
'/bin/sync' -> 'true'
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_force-unsafe-io']
0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_minimize']
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_minimize']
0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_squeeze-backports']
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_squeeze-backports']
0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_zz_backports']
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_setup_zz_backports']
0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m3.8s DUMP:
install ok installed apt apt 3.0.0
install ok installed base-files base-files 13.7
install ok installed base-passwd base-passwd 3.6.7
install ok installed bash bash 5.2.37-1.1+b2
install ok installed bsdutils bsdutils 1:2.41-3
install ok installed coreutils coreutils 9.5-1+b1
install ok installed dash dash 0.5.12-12
install ok installed debconf debconf 1.5.91
install ok installed debian-archive-keyring debian-archive-keyring 2023.4
install ok installed debianutils debianutils 5.21
install ok installed diffutils diffutils 1:3.10-3
install ok installed dpkg dpkg 1.22.18
install ok installed findutils findutils 4.10.0-3
install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19
install ok installed grep grep 3.11-4
install ok installed gzip gzip 1.13-1
install ok installed hostname hostname 3.25
install ok installed init-system-helpers init-system-helpers 1.68
install ok installed libacl1:amd64 libacl1 2.3.2-2+b1
install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0
install ok installed libattr1:amd64 libattr1 1:2.5.2-3
install ok installed libaudit-common libaudit-common 1:4.0.2-2
install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2
install ok installed libblkid1:amd64 libblkid1 2.41-3
install ok installed libbsd0:amd64 libbsd0 0.12.2-2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6
install ok installed libc-bin libc-bin 2.41-6
install ok installed libc6:amd64 libc6 2.41-6
install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1
install ok installed libcap2:amd64 libcap2 1:2.75-4
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1
install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277
install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19
install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3
install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1
install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3
install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4
install ok installed liblzma5:amd64 liblzma5 5.8.1-1
install ok installed libmd0:amd64 libmd0 1.1.0-2+b1
install ok installed libmount1:amd64 libmount1 2.41-3
install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1
install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3
install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3
install ok installed libpam-runtime libpam-runtime 1.7.0-3
install ok installed libpam0g:amd64 libpam0g 1.7.0-3
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1
install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2
install ok installed libselinux1:amd64 libselinux1 3.8.1-1
install ok installed libsemanage-common libsemanage-common 3.8.1-1
install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1
install ok installed libsepol2:amd64 libsepol2 3.8.1-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3
install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2
install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1
install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19
install ok installed libsystemd0:amd64 libsystemd0 257.5-2
install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2
install ok installed libudev1:amd64 libudev1 257.5-2
install ok installed libuuid1:amd64 libuuid1 2.41-3
install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2
install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1
install ok installed login login 1:4.16.0-2+really2.41-3
install ok installed login.defs login.defs 1:4.17.4-1
install ok installed mawk mawk 1.3.4.20250131-1
install ok installed mount mount 2.41-3
install ok installed ncurses-base ncurses-base 6.5+20250216-2
install ok installed ncurses-bin ncurses-bin 6.5+20250216-2
install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1
install ok installed passwd passwd 1:4.17.4-1
install ok installed perl-base perl-base 5.40.1-2
install ok installed sed sed 4.9-2
install ok installed sqv sqv 1.3.0-1
install ok installed sysvinit-utils sysvinit-utils 3.14-4
install ok installed tar tar 1.35+dfsg-3.1
install ok installed tzdata tzdata 2025b-1
install ok installed usr-is-merged usr-is-merged 39+nmu2
install ok installed util-linux util-linux 2.41-3
install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m3.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat
0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m4.0s INFO: Running scripts is_testable
0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/is_testable_uninstallable']
0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/is_testable_uninstallable']
0m4.0s INFO: Running scripts pre_test
0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_test_exceptions']
0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_test_exceptions']
0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_test_root_password']
0m4.1s DUMP:
New password: Retype new password: passwd: password updated successfully
0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_test_root_password']
0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'show', '--no-all-versions', 'python3-ngs']
0m4.2s DUMP:
Package: python3-ngs
Source: sra-sdk
Version: 3.0.9+dfsg-7.1
Installed-Size: 215
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Depends: python3:any, libncbi-ngs3 (>= 3.0.9+dfsg-7.1), libncbi-ngs3 (<< 3.0.9+dfsg-7.1.1~)
Description-en: Next Generation Sequencing language Bindings (Python3 bindings)
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
The API is currently expressed in C++, Java and Python languages. The
design makes it possible to maintain a high degree of similarity between
the code in one language and code in another - especially between C++
and Java.
.
Python3 bindings.
Description-md5: 339536e9adbe8549aa1efd268c2ee905
Homepage: https://github.com/ncbi/sra-tools/
Section: python
Priority: optional
Filename: pool/main/s/sra-sdk/python3-ngs_3.0.9+dfsg-7.1_all.deb
Size: 44544
MD5sum: cbd1bde518ac76a8941488843073d4f8
SHA256: 60fa3dd745a27ae8c07d8e90205e2210da0962793082f0951f9aff93d1651362
0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'show', '--no-all-versions', 'python3-ngs']
0m4.2s INFO: apt-cache knows about the following packages: python3-ngs
0m4.2s INFO: Running scripts pre_install
0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_database-server']
0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_database-server']
0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_exceptions']
0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_exceptions']
0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_extras']
0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_extras']
0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture']
0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture']
0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy']
0m4.2s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian trixie/main amd64 Packages
release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy']
0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy', 'python3-ngs']
0m4.2s DUMP:
python3-ngs:
Installed: (none)
Candidate: 3.0.9+dfsg-7.1
Version table:
3.0.9+dfsg-7.1 500
500 http://deb.debian.org/debian trixie/main amd64 Packages
0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy', 'python3-ngs']
0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', '-y', 'install', 'python3-ngs']
0m6.5s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libexpat1 libffi8 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-ngs3
libncbi-vdb3 libncursesw6 libpython3-stdlib libpython3.13-minimal
libpython3.13-stdlib libreadline8t64 media-types ncbi-vdb-data netbase
python3 python3-minimal python3.13 python3.13-minimal readline-common
Suggested packages:
python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binutils
binfmt-support readline-doc
Recommended packages:
libgpm2 ca-certificates
The following NEW packages will be installed:
libexpat1 libffi8 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-ngs3
libncbi-vdb3 libncursesw6 libpython3-stdlib libpython3.13-minimal
libpython3.13-stdlib libreadline8t64 media-types ncbi-vdb-data netbase
python3 python3-minimal python3-ngs python3.13 python3.13-minimal
readline-common
0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded.
Need to get 8589 kB of archives.
After this operation, 30.6 MB of additional disk space will be used.
Get:1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-3 [861 kB]
Get:2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-1 [108 kB]
Get:3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-3 [2212 kB]
Get:4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB]
Get:5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB]
Get:6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB]
Get:7 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get:8 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB]
Get:9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB]
Get:10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get:11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-3 [1952 kB]
Get:12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-3 [746 kB]
Get:13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB]
Get:14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.2-2 [28.1 kB]
Get:15 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto16 amd64 3.6.3-1 [357 kB]
Get:16 http://deb.debian.org/debian trixie/main amd64 libmbedx509-7 amd64 3.6.3-1 [149 kB]
Get:17 http://deb.debian.org/debian trixie/main amd64 libmbedtls21 amd64 3.6.3-1 [236 kB]
Get:18 http://deb.debian.org/debian trixie/main amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [74.0 kB]
Get:19 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb3 amd64 3.0.9+dfsg-2 [1189 kB]
Get:20 http://deb.debian.org/debian trixie/main amd64 libncbi-ngs3 amd64 3.0.9+dfsg-7.1 [156 kB]
Get:21 http://deb.debian.org/debian trixie/main amd64 python3-ngs all 3.0.9+dfsg-7.1 [44.5 kB]
Fetched 8589 kB in 0s (46.4 MB/s)
Selecting previously unselected package libpython3.13-minimal:amd64.
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Setting up python3-ngs (3.0.9+dfsg-7.1) ...
/usr/lib/python3/dist-packages/ngs/LibManager.py:123: SyntaxWarning: invalid escape sequence '\.'
arr = re.split('\.\s*|\-\s*|\s+', version_str)
Processing triggers for libc-bin (2.41-6) ...
0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', '-y', 'install', 'python3-ngs']
0m6.5s INFO: Running scripts post_install
0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_install_exceptions']
0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_install_exceptions']
0m6.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m6.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m6.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmppak93c8l to sid
0m6.7s DEBUG: sources.list:
deb http://deb.debian.org/debian/ sid main
0m6.7s INFO: Running scripts pre_distupgrade
0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_distupgrade_exceptions']
0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_distupgrade_exceptions']
0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', 'update']
0m8.5s DUMP:
Get:1 http://deb.debian.org/debian sid InRelease [205 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB]
Get:3 http://deb.debian.org/debian sid/main Translation-en [7416 kB]
Fetched 17.8 MB in 1s (12.9 MB/s)
Reading package lists...
0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', 'update']
0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', '-yf', 'dist-upgrade']
0m11.8s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
bash bsdutils coreutils debian-archive-keyring libblkid1 libcap2
libdebconfclient0 liblastlog2-2 libmount1 libncbi-ngs3 libncbi-vdb3
libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libsmartcols1
libsqlite3-0 libssl3t64 libuuid1 login mount ncbi-vdb-data
openssl-provider-legacy python3 python3-minimal python3-ngs python3.13
python3.13-minimal util-linux
28 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 17.9 MB of archives.
After this operation, 1222 kB of additional disk space will be used.
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Get:2 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41-4 [110 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.7-1 [3012 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41-4 [28.4 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41-4 [37.6 kB]
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Get:7 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41-4 [209 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41-4 [143 kB]
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Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-3 [913 kB]
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Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.3-1 [751 kB]
Get:14 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.3-1 [2210 kB]
Get:15 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.3-1 [861 kB]
Get:16 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.3-1 [1954 kB]
Get:17 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.5.0-1 [307 kB]
Get:18 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.5.0-1 [2432 kB]
Get:19 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.3-1 [27.2 kB]
Get:20 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.3-1 [28.2 kB]
Get:21 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.3-1 [10.2 kB]
Get:22 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2025.1 [179 kB]
Get:23 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.75-5 [28.0 kB]
Get:24 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.278 [10.5 kB]
Get:25 http://deb.debian.org/debian sid/main amd64 python3-ngs all 3.2.1+dfsg-3 [46.5 kB]
Get:26 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB]
Get:27 http://deb.debian.org/debian sid/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB]
Get:28 http://deb.debian.org/debian sid/main amd64 libncbi-ngs3 amd64 3.2.1+dfsg-3 [158 kB]
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Preparing to unpack .../python3-ngs_3.2.1+dfsg-3_all.deb ...
Unpacking python3-ngs (3.2.1+dfsg-3) over (3.0.9+dfsg-7.1) ...
Preparing to unpack .../ncbi-vdb-data_3.2.1+dfsg-2_all.deb ...
Unpacking ncbi-vdb-data (3.2.1+dfsg-2) over (3.0.9+dfsg-2) ...
Preparing to unpack .../libncbi-vdb3_3.2.1+dfsg-2_amd64.deb ...
Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) over (3.0.9+dfsg-2) ...
Preparing to unpack .../libncbi-ngs3_3.2.1+dfsg-3_amd64.deb ...
Unpacking libncbi-ngs3:amd64 (3.2.1+dfsg-3) over (3.0.9+dfsg-7.1) ...
Setting up mount (2.41-4) ...
Setting up ncbi-vdb-data (3.2.1+dfsg-2) ...
Setting up libpython3.13-stdlib:amd64 (3.13.3-1) ...
Setting up libpython3-stdlib:amd64 (3.13.3-1) ...
Setting up login (1:4.16.0-2+really2.41-4) ...
Setting up python3.13 (3.13.3-1) ...
Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ...
Setting up python3 (3.13.3-1) ...
Setting up libncbi-ngs3:amd64 (3.2.1+dfsg-3) ...
Setting up python3-ngs (3.2.1+dfsg-3) ...
Processing triggers for debianutils (5.21) ...
Processing triggers for libc-bin (2.41-6) ...
0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', '-yf', 'dist-upgrade']
0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m12.0s DUMP:
f39af8f11fd12bb7d28feb2935e986d9 -
0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'show', '--no-all-versions', 'python3-ngs']
0m12.2s DUMP:
Package: python3-ngs
Source: sra-sdk
Version: 3.2.1+dfsg-3
Installed-Size: 217
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Depends: python3:any, libncbi-ngs3 (>= 3.2.1+dfsg-3), libncbi-ngs3 (<< 3.2.1+dfsg-3.1~)
Description-en: Next Generation Sequencing language Bindings (Python3 bindings)
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
The API is currently expressed in C++, Java and Python languages. The
design makes it possible to maintain a high degree of similarity between
the code in one language and code in another - especially between C++
and Java.
.
Python3 bindings.
Description-md5: 339536e9adbe8549aa1efd268c2ee905
Homepage: https://github.com/ncbi/sra-tools/
Section: python
Priority: optional
Filename: pool/main/s/sra-sdk/python3-ngs_3.2.1+dfsg-3_all.deb
Size: 46512
MD5sum: b8875a1598335259f6096771e08154c0
SHA256: 86f6a9b4c25cdf716807e5a97f0601d4a0baf99ec47a4926dbcfc7b5a8d7da4b
0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'show', '--no-all-versions', 'python3-ngs']
0m12.2s INFO: apt-cache knows about the following packages: python3-ngs
0m12.2s INFO: Running scripts pre_install
0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_database-server']
0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_database-server']
0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_exceptions']
0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_exceptions']
0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_extras']
0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_extras']
0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture']
0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture']
0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy']
0m12.2s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy']
0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy', 'python3-ngs']
0m12.2s DUMP:
python3-ngs:
Installed: 3.2.1+dfsg-3
Candidate: 3.2.1+dfsg-3
Version table:
*** 3.2.1+dfsg-3 500
500 http://deb.debian.org/debian sid/main amd64 Packages
100 /var/lib/dpkg/status
0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy', 'python3-ngs']
0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', '-y', 'install', 'python3-ngs']
0m12.5s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
python3-ngs is already the newest version (3.2.1+dfsg-3).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', '-y', 'install', 'python3-ngs']
0m12.5s INFO: Running scripts post_install
0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_install_exceptions']
0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_install_exceptions']
0m12.5s INFO: Running scripts post_distupgrade
0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_distupgrade_base_cleanup']
0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_distupgrade_base_cleanup']
0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_distupgrade_exceptions']
0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_distupgrade_exceptions']
0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_distupgrade_zz_backports']
0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_distupgrade_zz_backports']
0m12.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m12.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m12.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m13.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m13.0s INFO: Running scripts pre_install
0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_database-server']
0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_database-server']
0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_exceptions']
0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_exceptions']
0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_extras']
0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_extras']
0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture']
0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture']
0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy']
0m13.0s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy']
0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy', 'python3-ngs']
0m13.0s DUMP:
python3-ngs:
Installed: 3.2.1+dfsg-3
Candidate: 3.2.1+dfsg-3
Version table:
*** 3.2.1+dfsg-3 500
500 http://deb.debian.org/debian sid/main amd64 Packages
100 /var/lib/dpkg/status
0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-cache', 'policy', 'python3-ngs']
0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', '-y', 'install', 'python3-ngs=3.2.1+dfsg-3']
0m13.3s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
python3-ngs is already the newest version (3.2.1+dfsg-3).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', '-y', 'install', 'python3-ngs=3.2.1+dfsg-3']
0m13.3s INFO: Running scripts post_install
0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_install_exceptions']
0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_install_exceptions']
0m13.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m13.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m13.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppak93c8l', '-ac', '--ignore-obsolete']
0m14.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppak93c8l', '-ac', '--ignore-obsolete']
0m14.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m14.1s DUMP:
0.15.6
0m14.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m14.1s INFO: Running adequate version 0.15.6 now.
0m14.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'python3-ngs']
0m14.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'python3-ngs']
0m14.2s INFO: Running scripts pre_remove
0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_exceptions']
0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/pre_remove_exceptions']
0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m14.6s DUMP:
install ok installed apt apt 3.0.0
install ok installed base-files base-files 13.7
install ok installed base-passwd base-passwd 3.6.7
install ok installed bash bash 5.2.37-2
install ok installed bsdutils bsdutils 1:2.41-4
install ok installed coreutils coreutils 9.7-1
install ok installed dash dash 0.5.12-12
install ok installed debconf debconf 1.5.91
install ok installed debian-archive-keyring debian-archive-keyring 2025.1
install ok installed debianutils debianutils 5.21
install ok installed diffutils diffutils 1:3.10-3
install ok installed dpkg dpkg 1.22.18
install ok installed findutils findutils 4.10.0-3
install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19
install ok installed grep grep 3.11-4
install ok installed gzip gzip 1.13-1
install ok installed hostname hostname 3.25
install ok installed init-system-helpers init-system-helpers 1.68
install ok installed libacl1:amd64 libacl1 2.3.2-2+b1
install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0
install ok installed libattr1:amd64 libattr1 1:2.5.2-3
install ok installed libaudit-common libaudit-common 1:4.0.2-2
install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2
install ok installed libblkid1:amd64 libblkid1 2.41-4
install ok installed libbsd0:amd64 libbsd0 0.12.2-2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6
install ok installed libc-bin libc-bin 2.41-6
install ok installed libc6:amd64 libc6 2.41-6
install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1
install ok installed libcap2:amd64 libcap2 1:2.75-5
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1
install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278
install ok installed libexpat1:amd64 libexpat1 2.7.1-1
install ok installed libffi8:amd64 libffi8 3.4.7-1
install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19
install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3
install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1
install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-4
install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4
install ok installed liblzma5:amd64 liblzma5 5.8.1-1
install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.3-1
install ok installed libmbedtls21:amd64 libmbedtls21 3.6.3-1
install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.3-1
install ok installed libmd0:amd64 libmd0 1.1.0-2+b1
install ok installed libmount1:amd64 libmount1 2.41-4
install ok installed libncbi-ngs3:amd64 libncbi-ngs3 3.2.1+dfsg-3
install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.2.1+dfsg-2
install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2
install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1
install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3
install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3
install ok installed libpam-runtime libpam-runtime 1.7.0-3
install ok installed libpam0g:amd64 libpam0g 1.7.0-3
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1
install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.3-1
install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.3-1
install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.3-1
install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6
install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2
install ok installed libselinux1:amd64 libselinux1 3.8.1-1
install ok installed libsemanage-common libsemanage-common 3.8.1-1
install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1
install ok installed libsepol2:amd64 libsepol2 3.8.1-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.41-4
install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-3
install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1
install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19
install ok installed libsystemd0:amd64 libsystemd0 257.5-2
install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2
install ok installed libudev1:amd64 libudev1 257.5-2
install ok installed libuuid1:amd64 libuuid1 2.41-4
install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2
install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1
install ok installed login login 1:4.16.0-2+really2.41-4
install ok installed login.defs login.defs 1:4.17.4-1
install ok installed mawk mawk 1.3.4.20250131-1
install ok installed media-types media-types 13.0.0
install ok installed mount mount 2.41-4
install ok installed ncbi-vdb-data ncbi-vdb-data 3.2.1+dfsg-2
install ok installed ncurses-base ncurses-base 6.5+20250216-2
install ok installed ncurses-bin ncurses-bin 6.5+20250216-2
install ok installed netbase netbase 6.5
install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1
install ok installed passwd passwd 1:4.17.4-1
install ok installed perl-base perl-base 5.40.1-2
install ok installed python3 python3 3.13.3-1
install ok installed python3-minimal python3-minimal 3.13.3-1
install ok installed python3-ngs python3-ngs 3.2.1+dfsg-3
install ok installed python3.13 python3.13 3.13.3-1
install ok installed python3.13-minimal python3.13-minimal 3.13.3-1
install ok installed readline-common readline-common 8.2-6
install ok installed sed sed 4.9-2
install ok installed sqv sqv 1.3.0-1
install ok installed sysvinit-utils sysvinit-utils 3.14-4
install ok installed tar tar 1.35+dfsg-3.1
install ok installed tzdata tzdata 2025b-1
install ok installed usr-is-merged usr-is-merged 39+nmu2
install ok installed util-linux util-linux 2.41-4
install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1
0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', 'remove', '--allow-remove-essential', 'libexpat1:amd64', 'libffi8:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'readline-common', 'python3-ngs']
0m15.2s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
libexpat1 libffi8 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-ngs3
libncbi-vdb3 libncursesw6 libpython3-stdlib libpython3.13-minimal
libpython3.13-stdlib libreadline8t64 media-types ncbi-vdb-data netbase
python3 python3-minimal python3-ngs python3.13 python3.13-minimal
readline-common
0 upgraded, 0 newly installed, 21 to remove and 0 not upgraded.
After this operation, 30.7 MB disk space will be freed.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 5938 files and directories currently installed.)
Removing python3-ngs (3.2.1+dfsg-3) ...
Removing python3 (3.13.3-1) ...
Removing python3-minimal (3.13.3-1) ...
Removing python3.13 (3.13.3-1) ...
Removing python3.13-minimal (3.13.3-1) ...
Removing libexpat1:amd64 (2.7.1-1) ...
Removing libpython3-stdlib:amd64 (3.13.3-1) ...
Removing libpython3.13-stdlib:amd64 (3.13.3-1) ...
Removing libffi8:amd64 (3.4.7-1) ...
Removing libncbi-ngs3:amd64 (3.2.1+dfsg-3) ...
Removing libncbi-vdb3:amd64 (3.2.1+dfsg-2) ...
Removing libmbedtls21:amd64 (3.6.3-1) ...
Removing libmbedx509-7:amd64 (3.6.3-1) ...
Removing libmbedcrypto16:amd64 (3.6.3-1) ...
Removing libncursesw6:amd64 (6.5+20250216-2) ...
Removing libpython3.13-minimal:amd64 (3.13.3-1) ...
Removing libreadline8t64:amd64 (8.2-6) ...
Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Removing media-types (13.0.0) ...
Removing ncbi-vdb-data (3.2.1+dfsg-2) ...
Removing netbase (6.5) ...
Removing readline-common (8.2-6) ...
Processing triggers for libc-bin (2.41-6) ...
0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', 'remove', '--allow-remove-essential', 'libexpat1:amd64', 'libffi8:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'readline-common', 'python3-ngs']
0m15.2s INFO: Running scripts post_remove
0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_remove_exceptions']
0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_remove_exceptions']
0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg', '--purge', 'libexpat1:amd64', 'libffi8:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'readline-common']
0m15.2s DUMP:
dpkg: warning: ignoring request to remove libexpat1 which isn't installed
dpkg: warning: ignoring request to remove libffi8 which isn't installed
dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed
dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed
dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed
dpkg: warning: ignoring request to remove libncbi-ngs3 which isn't installed
dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed
dpkg: warning: ignoring request to remove libncursesw6 which isn't installed
dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed
(Reading database ... 4950 files and directories currently installed.)
Purging configuration files for libpython3.13-minimal:amd64 (3.13.3-1) ...
dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed
Purging configuration files for libreadline8t64:amd64 (8.2-6) ...
Purging configuration files for media-types (13.0.0) ...
Purging configuration files for ncbi-vdb-data (3.2.1+dfsg-2) ...
Purging configuration files for netbase (6.5) ...
Purging configuration files for python3 (3.13.3-1) ...
dpkg: warning: ignoring request to remove python3-minimal which isn't installed
dpkg: warning: ignoring request to remove python3.13 which isn't installed
Purging configuration files for python3.13-minimal (3.13.3-1) ...
Purging configuration files for readline-common (8.2-6) ...
0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg', '--purge', 'libexpat1:amd64', 'libffi8:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'readline-common']
0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg', '--purge', 'python3-ngs']
0m15.2s DUMP:
dpkg: warning: ignoring request to remove python3-ngs which isn't installed
0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg', '--purge', 'python3-ngs']
0m15.2s INFO: Running scripts post_purge
0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_purge_exceptions']
0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_purge_exceptions']
0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg', '--purge', '--pending']
0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg', '--purge', '--pending']
0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg', '--remove', '--pending']
0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg', '--remove', '--pending']
0m15.2s INFO: Running scripts post_test
0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_test_exceptions']
0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'tmp/scripts/post_test_exceptions']
0m15.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m15.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg-divert', '--list']
0m15.4s DUMP:
local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
local diversion of /home to /home.distrib
diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
diversion of /libx32 to /.libx32.usr-is-merged by base-files
local diversion of /usr/bin/sync to /usr/bin/sync.distrib
diversion of /lib32 to /.lib32.usr-is-merged by base-files
diversion of /libo32 to /.libo32.usr-is-merged by base-files
0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'dpkg-divert', '--list']
0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', 'clean']
0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppak93c8l', 'apt-get', 'clean']
0m15.5s DEBUG: Recording chroot state
0m16.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/shm']
0m16.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/shm']
0m16.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/console']
0m16.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/console']
0m16.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/ptmx']
0m16.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/ptmx']
0m16.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/pts']
0m16.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppak93c8l/dev/pts']
0m16.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppak93c8l/proc']
0m16.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppak93c8l/proc']
0m16.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m16.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppak93c8l']
0m16.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmppak93c8l
0m16.2s INFO: PASS: Upgrading between Debian distributions.
0m16.2s INFO: PASS: All tests.
0m16.2s INFO: piuparts run ends.
ret=0
End: 2025-04-10 09:52:51 GMT