Start: 2025-09-26 16:18:04 GMT [testing] Package: python3-pybel Source: pybel Version: 0.15.5-1 Installed-Size: 1561 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bel-resources, python3-bioregistry, python3-click, python3-click-plugins, python3-humanize, python3-jsonschema, python3-more-itertools, python3-networkx, python3-pandas, python3-pyparsing, python3-pystow, python3-ratelimit, python3-requests, python3-requests-file, python3-sqlalchemy, python3-tabulate, python3-tqdm, python3:any, libjs-jquery, libjs-d3 Suggests: python-pybel-doc Description: Biological Expression Language Homepage: https://pybel.readthedocs.io Description-md5: 7f907ff46c47b8a43a5a2fcaa1abff11 Section: science Priority: optional Filename: pool/main/p/pybel/python3-pybel_0.15.5-1_all.deb Size: 242148 MD5sum: ece61e92b9ca645d0febabc3c569c143 SHA256: a13a56cf61612b0148a0c5a7f7fd5b0a77ec088f5daa763ea09e7433fbda09db [sid] Package: python3-pybel Source: pybel Version: 0.15.5-2 Installed-Size: 1570 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bel-resources, python3-bioregistry, python3-click, python3-humanize, python3-jsonschema, python3-more-itertools, python3-networkx, python3-pandas, python3-pyparsing, python3-pystow, python3-ratelimit, python3-requests, python3-requests-file, python3-sqlalchemy, python3-tabulate, python3-tqdm, python3:any, libjs-jquery, libjs-d3 Suggests: python-pybel-doc Description: Biological Expression Language Homepage: https://pybel.readthedocs.io Description-md5: 7f907ff46c47b8a43a5a2fcaa1abff11 Section: science Priority: optional Filename: pool/main/p/pybel/python3-pybel_0.15.5-2_all.deb Size: 244680 MD5sum: ed16bbae24288e85d02daf8fdfe328db SHA256: 25a48d5569a66efd512542429df87d5804153e6b5c377fa44433c77318c981b6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-pybel=0.15.5-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-pybel=0.15.5-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-40-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.153-1 (2025-09-20) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpphpt0e60 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpphpt0e60 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpphpt0e60/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', 'update'] 0m2.1s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [147 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9730 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6475 kB] Fetched 16.4 MB in 1s (14.9 MB/s) Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', '-yf', 'dist-upgrade'] 0m6.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: gcc-15-base The following packages will be upgraded: apt base-files bash bsdutils gcc-14-base init-system-helpers libapt-pkg7.0 libaudit-common libaudit1 libblkid1 libgcc-s1 libgmp10 liblastlog2-2 liblzma5 libmount1 libpcre2-8-0 libsmartcols1 libsqlite3-0 libssl3t64 libstdc++6 libsystemd0 libudev1 libuuid1 libzstd1 login login.defs mount openssl-provider-legacy passwd tzdata util-linux 31 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 15.3 MB of archives. After this operation, 1503 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-1 [1556 kB] Get:3 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.1-3 [117 kB] Get:4 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.1-3 [29.3 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.1-3 [38.9 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.1-3 [188 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.1-3 [229 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.1-3 [157 kB] Get:9 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.1-3 [1306 kB] Get:10 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.1-3 [172 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:12 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-4 [52.8 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-4 [71.7 kB] Get:14 http://deb.debian.org/debian forky/main amd64 liblzma5 amd64 5.8.1-1.1 [316 kB] Get:15 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.5.3-1 [308 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-1.1 [320 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.5.3-1 [2445 kB] Get:18 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-4 [738 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 258-1 [466 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 258-1 [156 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.5 [1182 kB] Get:22 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.5 [1479 kB] Get:23 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.1.2-1 [60.4 kB] Get:26 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.1-3 [119 kB] Get:27 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Get:28 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Get:29 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.18.0-1 [211 kB] Get:30 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.18.0-1 [1284 kB] Get:31 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get:32 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Preconfiguring packages ... Fetched 15.3 MB in 0s (31.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.1-3_amd64.deb ... Unpacking util-linux (2.41.1-3) over (2.41-5) ... Setting up util-linux (2.41.1-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4940 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-4_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-4) over (14.2.0-19) ... Setting up libstdc++6:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4940 files and directories currently installed.) Preparing to unpack .../libsystemd0_258-1_amd64.deb ... Unpacking libsystemd0:amd64 (258-1) over (257.7-1) ... Setting up libsystemd0:amd64 (258-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4940 files and directories currently installed.) Preparing to unpack .../libudev1_258-1_amd64.deb ... Unpacking libudev1:amd64 (258-1) over (257.7-1) ... Setting up libudev1:amd64 (258-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4940 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.5_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.5) over (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.1.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4940 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.5_amd64.deb ... Unpacking apt (3.1.5) over (3.0.3) ... Setting up apt (3.1.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4938 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.68) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.1.2-1_all.deb ... Unpacking libaudit-common (1:4.1.2-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.1.2-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.1.2-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4938 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.1-3_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.1-3) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-5) over (2:6.3.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4941 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.46-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1) over (10.45-1) ... Setting up libpcre2-8-0:amd64 (10.46-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4941 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.18.0-1_all.deb ... Unpacking login.defs (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../passwd_1%3a4.18.0-1_amd64.deb ... Unpacking passwd (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4) ... Preparing to unpack .../gcc-14-base_14.3.0-8_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-8) over (14.2.0-19) ... Setting up gcc-14-base:amd64 (14.3.0-8) ... Setting up login.defs (1:4.18.0-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Sep 26 16:18:11 UTC 2025. Universal Time is now: Fri Sep 26 16:18:11 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up passwd (1:4.18.0-1) ... Setting up mount (2.41.1-3) ... Setting up login (1:4.16.0-2+really2.41.1-3) ... Processing triggers for debianutils (5.23.2) ... Processing triggers for libc-bin (2.41-12) ... 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', '-yf', 'dist-upgrade'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.7s DUMP: ccab4517412cc09cb7f068c96c962181 - 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.7s INFO: Running scripts post_setup 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_dummy_users'] 0m8.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_dummy_users'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_forbid_home'] 0m8.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_forbid_home'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DUMP: install ok installed apt apt 3.1.5 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.1-3 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-8 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-4 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblkid1:amd64 libblkid1 2.41.1-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-3 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.3-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 258-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258-1 install ok installed libuuid1:amd64 libuuid1 2.41.1-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.1-3 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.1-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.3-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.1-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 0m9.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 0m9.1s INFO: Running scripts is_testable 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/is_testable_uninstallable'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/is_testable_uninstallable'] 0m9.1s INFO: Running scripts pre_test 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_test_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_test_exceptions'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_test_root_password'] 0m9.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_test_root_password'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'show', '--no-all-versions', 'python3-pybel'] 0m9.4s DUMP: Package: python3-pybel Source: pybel Version: 0.15.5-1 Installed-Size: 1561 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bel-resources, python3-bioregistry, python3-click, python3-click-plugins, python3-humanize, python3-jsonschema, python3-more-itertools, python3-networkx, python3-pandas, python3-pyparsing, python3-pystow, python3-ratelimit, python3-requests, python3-requests-file, python3-sqlalchemy, python3-tabulate, python3-tqdm, python3:any, libjs-jquery, libjs-d3 Suggests: python-pybel-doc Description-en: Biological Expression Language PyBEL is a pure Python package for parsing and handling biological networks encoded in the Biological Expression Language (BEL) version 2. It also facilitates data interchange between common formats and databases such as NetworkX, JSON, CSV, SIF, Cytoscape, CX, NDEx, SQL, and Neo4J. . This package installs the library for Python 3. Description-md5: 7f907ff46c47b8a43a5a2fcaa1abff11 Homepage: https://pybel.readthedocs.io Section: science Priority: optional Filename: pool/main/p/pybel/python3-pybel_0.15.5-1_all.deb Size: 242148 MD5sum: ece61e92b9ca645d0febabc3c569c143 SHA256: a13a56cf61612b0148a0c5a7f7fd5b0a77ec088f5daa763ea09e7433fbda09db 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'show', '--no-all-versions', 'python3-pybel'] 0m9.4s INFO: apt-cache knows about the following packages: python3-pybel 0m9.4s INFO: Running scripts pre_install 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy'] 0m9.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy', 'python3-pybel'] 0m9.6s DUMP: python3-pybel: Installed: (none) Candidate: 0.15.5-1 Version table: 0.15.5-1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy', 'python3-pybel'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', '-y', 'install', 'python3-pybel'] 0m36.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 libjs-d3 libjs-jquery liblapack3 libncursesw6 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 media-types netbase openssl python3 python3-annotated-types python3-attr python3-autocommand python3-bel-resources python3-bioregistry python3-certifi python3-chardet python3-charset-normalizer python3-click python3-click-plugins python3-curies python3-dateutil python3-dnspython python3-email-validator python3-greenlet python3-humanize python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jsonschema python3-jsonschema-specifications python3-minimal python3-more-itertools python3-multisplitby python3-networkx python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pkg-resources python3-pydantic python3-pydantic-core python3-pyparsing python3-pystow python3-pytz python3-ratelimit python3-referencing python3-requests python3-requests-file python3-rpds-py python3-sortedcontainers python3-sqlalchemy python3-tabulate python3-tqdm python3-trie python3-typeguard python3-typing-extensions python3-urllib3 python3.13 python3.13-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv python-attr-doc node-prismjs libjs-jquery-datatables libjs-vue python-charset-normalizer-doc python3-trio python3-aioquic python-greenlet-dev python-greenlet-doc python-jsonschema-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python3-setuptools python-pybel-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-sortedcontainers-doc python-sqlalchemy-doc python3-asyncpg python3-pg8000 python3-psycopg2 python3-psycopg2cffi python3-aiosqlite python3-mariadb-connector python3-mysqldb python3-mysql.connector python3-pyodbc python3-pymssql python3-cx-oracle python3-oracledb python-trie-doc python3-brotli python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: javascript-common libgpm2 python3-cryptography python3-h2 python3-httpcore python3-httpx python3-fqdn python3-isoduration python3-json-pointer python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-uritemplate python3-webcolors python3-gdal python3-matplotlib python3-pydot python3-pygraphviz python3-scipy python3-yaml python3-tz python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-sqlalchemy-ext The following NEW packages will be installed: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 libjs-d3 libjs-jquery liblapack3 libncursesw6 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 media-types netbase openssl python3 python3-annotated-types python3-attr python3-autocommand python3-bel-resources python3-bioregistry python3-certifi python3-chardet python3-charset-normalizer python3-click python3-click-plugins python3-curies python3-dateutil python3-dnspython python3-email-validator python3-greenlet python3-humanize python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jsonschema python3-jsonschema-specifications python3-minimal python3-more-itertools python3-multisplitby python3-networkx python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pkg-resources python3-pybel python3-pydantic python3-pydantic-core python3-pyparsing python3-pystow python3-pytz python3-ratelimit python3-referencing python3-requests python3-requests-file python3-rpds-py python3-sortedcontainers python3-sqlalchemy python3-tabulate python3-tqdm python3-trie python3-typeguard python3-typing-extensions python3-urllib3 python3.13 python3.13-minimal readline-common 0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 47.8 MB of archives. After this operation, 246 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.2-1 [111 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get:3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get:4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get:5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get:6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get:12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get:14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get:15 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get:18 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get:19 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get:20 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.3-1 [1495 kB] Get:21 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:24 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get:25 http://deb.debian.org/debian forky/main amd64 python3-annotated-types all 0.7.0-1 [18.8 kB] Get:26 http://deb.debian.org/debian forky/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get:27 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:28 http://deb.debian.org/debian forky/main amd64 python3-multisplitby all 0.0.1-6 [4688 B] Get:29 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:30 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get:31 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:32 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get:33 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:34 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get:35 http://deb.debian.org/debian forky/main amd64 python3-requests-file all 2.1.0-1 [6600 B] Get:36 http://deb.debian.org/debian forky/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get:37 http://deb.debian.org/debian forky/main amd64 python3-bel-resources all 0.0.3-4 [13.5 kB] Get:38 http://deb.debian.org/debian forky/main amd64 python3-pydantic-core amd64 2.27.2-3+b1 [1506 kB] Get:39 http://deb.debian.org/debian forky/main amd64 python3-dnspython all 2.7.0-1 [164 kB] Get:40 http://deb.debian.org/debian forky/main amd64 python3-email-validator all 2.2.0-1 [31.6 kB] Get:41 http://deb.debian.org/debian forky/main amd64 python3-pydantic amd64 2.10.6-2 [346 kB] Get:42 http://deb.debian.org/debian forky/main amd64 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get:43 http://deb.debian.org/debian forky/main amd64 python3-trie all 0.4.0+ds-1 [7640 B] Get:44 http://deb.debian.org/debian forky/main amd64 python3-curies all 0.9.0-1 [38.3 kB] Get:45 http://deb.debian.org/debian forky/main amd64 python3-tqdm all 4.67.1-6 [90.9 kB] Get:46 http://deb.debian.org/debian forky/main amd64 python3-pystow all 0.5.5-2 [25.8 kB] Get:47 http://deb.debian.org/debian forky/main amd64 python3-bioregistry all 0.11.12-3 [3907 kB] Get:48 http://deb.debian.org/debian forky/main amd64 python3-click-plugins all 1.1.1.2-1 [10.3 kB] Get:49 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:50 http://deb.debian.org/debian forky/main amd64 python3-greenlet amd64 3.1.0-1+b2 [165 kB] Get:51 http://deb.debian.org/debian forky/main amd64 python3-humanize all 4.12.1-1 [52.9 kB] Get:52 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get:53 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get:54 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get:55 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get:56 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:57 http://deb.debian.org/debian forky/main amd64 python3-rpds-py amd64 0.21.0-2+b1 [257 kB] Get:58 http://deb.debian.org/debian forky/main amd64 python3-referencing all 0.36.2-1 [23.7 kB] Get:59 http://deb.debian.org/debian forky/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get:60 http://deb.debian.org/debian forky/main amd64 python3-jsonschema all 4.19.2-6 [71.4 kB] Get:61 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get:62 http://deb.debian.org/debian forky/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:63 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2025.2-4 [31.8 kB] Get:64 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.3.2+dfsg-2 [4358 kB] Get:65 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.3.2+dfsg-2 [2931 kB] Get:66 http://deb.debian.org/debian forky/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:67 http://deb.debian.org/debian forky/main amd64 python3-ratelimit all 2.2.1-2 [6108 B] Get:68 http://deb.debian.org/debian forky/main amd64 python3-sqlalchemy all 2.0.43+ds1-1 [1224 kB] Get:69 http://deb.debian.org/debian forky/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get:70 http://deb.debian.org/debian forky/main amd64 python3-pybel all 0.15.5-1 [242 kB] Preconfiguring packages ... Fetched 47.8 MB in 1s (74.6 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4945 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.2-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Unpacking python3-urllib3 (2.5.0-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../19-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../20-python3-requests_2.32.5+dfsg-1_all.deb ... Unpacking python3-requests (2.32.5+dfsg-1) ... Selecting previously unselected package python3-requests-file. Preparing to unpack .../21-python3-requests-file_2.1.0-1_all.deb ... Unpacking python3-requests-file (2.1.0-1) ... Selecting previously unselected package python3-click. Preparing to unpack .../22-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... Selecting previously unselected package python3-bel-resources. Preparing to unpack .../23-python3-bel-resources_0.0.3-4_all.deb ... Unpacking python3-bel-resources (0.0.3-4) ... Selecting previously unselected package python3-pydantic-core. Preparing to unpack .../24-python3-pydantic-core_2.27.2-3+b1_amd64.deb ... Unpacking python3-pydantic-core (2.27.2-3+b1) ... Selecting previously unselected package python3-dnspython. Preparing to unpack .../25-python3-dnspython_2.7.0-1_all.deb ... Unpacking python3-dnspython (2.7.0-1) ... Selecting previously unselected package python3-email-validator. Preparing to unpack .../26-python3-email-validator_2.2.0-1_all.deb ... Unpacking python3-email-validator (2.2.0-1) ... Selecting previously unselected package python3-pydantic. Preparing to unpack .../27-python3-pydantic_2.10.6-2_amd64.deb ... Unpacking python3-pydantic (2.10.6-2) ... Selecting previously unselected package python3-sortedcontainers. Preparing to unpack .../28-python3-sortedcontainers_2.4.0-2_all.deb ... Unpacking python3-sortedcontainers (2.4.0-2) ... Selecting previously unselected package python3-trie. Preparing to unpack .../29-python3-trie_0.4.0+ds-1_all.deb ... Unpacking python3-trie (0.4.0+ds-1) ... 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Selecting previously unselected package python3-greenlet. Preparing to unpack .../36-python3-greenlet_3.1.0-1+b2_amd64.deb ... Unpacking python3-greenlet (3.1.0-1+b2) ... Selecting previously unselected package python3-humanize. Preparing to unpack .../37-python3-humanize_4.12.1-1_all.deb ... Unpacking python3-humanize (4.12.1-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../38-python3-more-itertools_10.8.0-1_all.deb ... Unpacking python3-more-itertools (10.8.0-1) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../39-python3-typeguard_4.4.4-1_all.deb ... Unpacking python3-typeguard (4.4.4-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../40-python3-inflect_7.5.0-1_all.deb ... Unpacking python3-inflect (7.5.0-1) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../41-python3-jaraco.context_6.0.1-1_all.deb ... Unpacking python3-jaraco.context (6.0.1-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../42-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-rpds-py. Preparing to unpack .../43-python3-rpds-py_0.21.0-2+b1_amd64.deb ... Unpacking python3-rpds-py (0.21.0-2+b1) ... Selecting previously unselected package python3-referencing. Preparing to unpack .../44-python3-referencing_0.36.2-1_all.deb ... Unpacking python3-referencing (0.36.2-1) ... Selecting previously unselected package python3-jsonschema-specifications. Preparing to unpack .../45-python3-jsonschema-specifications_2023.12.1-2_all.deb ... Unpacking python3-jsonschema-specifications (2023.12.1-2) ... Selecting previously unselected package python3-jsonschema. Preparing to unpack .../46-python3-jsonschema_4.19.2-6_all.deb ... Unpacking python3-jsonschema (4.19.2-6) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../47-python3-pkg-resources_78.1.1-0.1_all.deb ... Unpacking python3-pkg-resources (78.1.1-0.1) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../48-python3-networkx_3.2.1-5_all.deb ... Unpacking python3-networkx (3.2.1-5) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../49-python3-pytz_2025.2-4_all.deb ... Unpacking python3-pytz (2025.2-4) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../50-python3-pandas-lib_2.3.2+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.3.2+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../51-python3-pandas_2.3.2+dfsg-2_all.deb ... Unpacking python3-pandas (2.3.2+dfsg-2) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../52-python3-pyparsing_3.1.2-1_all.deb ... Unpacking python3-pyparsing (3.1.2-1) ... Selecting previously unselected package python3-ratelimit. Preparing to unpack .../53-python3-ratelimit_2.2.1-2_all.deb ... Unpacking python3-ratelimit (2.2.1-2) ... Selecting previously unselected package python3-sqlalchemy. Preparing to unpack .../54-python3-sqlalchemy_2.0.43+ds1-1_all.deb ... Unpacking python3-sqlalchemy (2.0.43+ds1-1) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../55-python3-tabulate_0.9.0-1_all.deb ... Unpacking python3-tabulate (0.9.0-1) ... Selecting previously unselected package python3-pybel. Preparing to unpack .../56-python3-pybel_0.15.5-1_all.deb ... Unpacking python3-pybel (0.15.5-1) ... Setting up media-types (13.0.0) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjs-d3 (3.5.17-4) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libgfortran5:amd64 (15.2.0-4) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up netbase (6.5) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up openssl (3.5.3-1) ... Setting up readline-common (8.3-3) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libreadline8t64:amd64 (8.3-3) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.7-1) ... Setting up python3 (3.13.7-1) ... Setting up python3-sortedcontainers (2.4.0-2) ... Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-annotated-types (0.7.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-multisplitby (0.0.1-6) ... Setting up python3-greenlet (3.1.0-1+b2) ... Setting up python3-idna (3.10-1) ... Setting up python3-click-plugins (1.1.1.2-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-rpds-py (0.21.0-2+b1) ... Setting up python3-dnspython (2.7.0-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-email-validator (2.2.0-1) ... Setting up python3-trie (0.4.0+ds-1) ... Setting up python3-humanize (4.12.1-1) ... Setting up python3-ratelimit (2.2.1-2) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-attr (25.3.0-1) ... Setting up python3-pydantic-core (2.27.2-3+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3-pandas-lib:amd64 (2.3.2+dfsg-2) ... Setting up python3-tqdm (4.67.1-6) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-pytz (2025.2-4) ... Setting up python3-sqlalchemy (2.0.43+ds1-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-pandas (2.3.2+dfsg-2) ... Setting up python3-pydantic (2.10.6-2) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up python3-pystow (0.5.5-2) ... Setting up python3-requests-file (2.1.0-1) ... Setting up python3-curies (0.9.0-1) ... Setting up python3-referencing (0.36.2-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-bioregistry (0.11.12-3) ... Setting up python3-bel-resources (0.0.3-4) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-jsonschema (4.19.2-6) ... Setting up python3-pybel (0.15.5-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', '-y', 'install', 'python3-pybel'] 0m36.4s INFO: Running scripts post_install 0m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_install_exceptions'] 0m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_install_exceptions'] 0m36.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 0m37.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 0m37.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpphpt0e60 to sid 0m37.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m37.3s INFO: Running scripts pre_distupgrade 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_distupgrade_exceptions'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_distupgrade_exceptions'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', 'update'] 0m41.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [207 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7437 kB] Fetched 17.8 MB in 3s (5966 kB/s) Reading package lists... 0m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', 'update'] 0m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', '-yf', 'dist-upgrade'] 0m46.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: python3-click-plugins Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: python3-typing-inspection The following packages will be upgraded: bsdutils libblkid1 libexpat1 libhogweed6t64 liblastlog2-2 libmount1 libnettle8t64 libsmartcols1 libuuid1 login mount python3-jsonschema python3-pybel python3-pydantic python3-pydantic-core util-linux 16 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 5291 kB of archives. After this operation, 121 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41.2-1 [28.9 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41.2-1 [38.1 kB] Get:3 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41.2-1 [93.4 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41.2-1 [173 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41.2-1 [211 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41.2-1 [144 kB] Get:7 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41.2-1 [1257 kB] Get:8 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41.2-1 [162 kB] Get:9 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41.2-1 [105 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10.2-1 [307 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10.2-1 [336 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3-jsonschema all 4.25.1-2 [75.7 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3-pybel all 0.15.5-2 [245 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3-pydantic amd64 2.12.0~a1-1 [369 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-pydantic-core amd64 2.37.2-1 [1619 kB] Get:17 http://deb.debian.org/debian sid/main amd64 python3-typing-inspection all 0.4.1-2 [13.5 kB] Fetched 5291 kB in 0s (30.5 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14427 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.2-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.2-1) over (2.41.1-3) ... Setting up libsmartcols1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14427 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.2-1_amd64.deb ... Unpacking util-linux (2.41.2-1) over (2.41.1-3) ... Setting up util-linux (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14432 files and directories currently installed.) Preparing to unpack .../mount_2.41.2-1_amd64.deb ... Unpacking mount (2.41.2-1) over (2.41.1-3) ... Preparing to unpack .../login_1%3a4.16.0-2+really2.41.2-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.2-1) over (1:4.16.0-2+really2.41.1-3) ... Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) over (2.7.2-1) ... Preparing to unpack .../libnettle8t64_3.10.2-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libnettle8t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14421 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10.2-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libhogweed6t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14421 files and directories currently installed.) Preparing to unpack .../python3-jsonschema_4.25.1-2_all.deb ... Unpacking python3-jsonschema (4.25.1-2) over (4.19.2-6) ... Preparing to unpack .../python3-pybel_0.15.5-2_all.deb ... Unpacking python3-pybel (0.15.5-2) over (0.15.5-1) ... Preparing to unpack .../python3-pydantic_2.12.0~a1-1_amd64.deb ... Unpacking python3-pydantic (2.12.0~a1-1) over (2.10.6-2) ... Preparing to unpack .../python3-pydantic-core_2.37.2-1_amd64.deb ... Unpacking python3-pydantic-core (2.37.2-1) over (2.27.2-3+b1) ... Selecting previously unselected package python3-typing-inspection. Preparing to unpack .../python3-typing-inspection_0.4.1-2_all.deb ... Unpacking python3-typing-inspection (0.4.1-2) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3-pydantic-core (2.37.2-1) ... Setting up python3-typing-inspection (0.4.1-2) ... Setting up python3-jsonschema (4.25.1-2) ... Setting up python3-pydantic (2.12.0~a1-1) ... Setting up mount (2.41.2-1) ... Setting up python3-pybel (0.15.5-2) ... Setting up login (1:4.16.0-2+really2.41.2-1) ... Processing triggers for libc-bin (2.41-12) ... 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', '-yf', 'dist-upgrade'] 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m47.2s DUMP: 589e1ff3a0f81cbd4f6e9470b8ac54aa - 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'show', '--no-all-versions', 'python3-pybel'] 0m47.4s DUMP: Package: python3-pybel Source: pybel Version: 0.15.5-2 Installed-Size: 1570 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bel-resources, python3-bioregistry, python3-click, python3-humanize, python3-jsonschema, python3-more-itertools, python3-networkx, python3-pandas, python3-pyparsing, python3-pystow, python3-ratelimit, python3-requests, python3-requests-file, python3-sqlalchemy, python3-tabulate, python3-tqdm, python3:any, libjs-jquery, libjs-d3 Suggests: python-pybel-doc Description-en: Biological Expression Language PyBEL is a pure Python package for parsing and handling biological networks encoded in the Biological Expression Language (BEL) version 2. It also facilitates data interchange between common formats and databases such as NetworkX, JSON, CSV, SIF, Cytoscape, CX, NDEx, SQL, and Neo4J. . This package installs the library for Python 3. Description-md5: 7f907ff46c47b8a43a5a2fcaa1abff11 Homepage: https://pybel.readthedocs.io Section: science Priority: optional Filename: pool/main/p/pybel/python3-pybel_0.15.5-2_all.deb Size: 244680 MD5sum: ed16bbae24288e85d02daf8fdfe328db SHA256: 25a48d5569a66efd512542429df87d5804153e6b5c377fa44433c77318c981b6 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'show', '--no-all-versions', 'python3-pybel'] 0m47.4s INFO: apt-cache knows about the following packages: python3-pybel 0m47.4s INFO: Running scripts pre_install 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_database-server'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_database-server'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_exceptions'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_exceptions'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_extras'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_extras'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy'] 0m47.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy', 'python3-pybel'] 0m47.7s DUMP: python3-pybel: Installed: 0.15.5-2 Candidate: 0.15.5-2 Version table: *** 0.15.5-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy', 'python3-pybel'] 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', '-y', 'install', 'python3-pybel'] 0m48.2s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-pybel is already the newest version (0.15.5-2). The following package was automatically installed and is no longer required: python3-click-plugins Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', '-y', 'install', 'python3-pybel'] 0m48.2s INFO: Running scripts post_install 0m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_install_exceptions'] 0m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_install_exceptions'] 0m48.2s INFO: Running scripts post_distupgrade 0m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 0m49.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 0m49.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 0m50.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 0m50.7s INFO: Running scripts pre_install 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_database-server'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_database-server'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_exceptions'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_exceptions'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_extras'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_extras'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy'] 0m50.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy', 'python3-pybel'] 0m50.8s DUMP: python3-pybel: Installed: 0.15.5-2 Candidate: 0.15.5-2 Version table: *** 0.15.5-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-cache', 'policy', 'python3-pybel'] 0m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', '-y', 'install', 'python3-pybel=0.15.5-2'] 0m51.3s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-pybel is already the newest version (0.15.5-2). The following package was automatically installed and is no longer required: python3-click-plugins Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', '-y', 'install', 'python3-pybel=0.15.5-2'] 0m51.3s INFO: Running scripts post_install 0m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_install_exceptions'] 0m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_install_exceptions'] 0m51.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 0m52.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 0m53.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', '-ac', '--ignore-obsolete'] 0m55.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', '-ac', '--ignore-obsolete'] 0m55.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.1s DUMP: 0.15.9~deb12u1 0m55.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.1s INFO: Running adequate version 0.15.9~deb12u1 now. 0m55.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'python3-pybel'] 0m55.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'python3-pybel'] 0m55.1s INFO: Running scripts pre_remove 0m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_exceptions'] 0m56.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/pre_remove_exceptions'] 0m56.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m56.0s DUMP: install ok installed apt apt 3.1.5 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-1 install ok installed ca-certificates ca-certificates 20250419 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-8 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-4 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblas3:amd64 libblas3 3.12.1-7 install ok installed libblkid1:amd64 libblkid1 2.41.2-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libexpat1:amd64 libexpat1 2.7.3-1 install ok installed libffi8:amd64 libffi8 3.5.2-2 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-4 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed liblapack3:amd64 liblapack3 3.12.1-7 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.2-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-1 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.7-1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.7-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.7-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.3-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 258-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258-1 install ok installed libuuid1:amd64 libuuid1 2.41.2-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.2-1 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.41.2-1 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed openssl openssl 3.5.3-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.3-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl-base perl-base 5.40.1-6 install ok installed python3 python3 3.13.7-1 install ok installed python3-annotated-types python3-annotated-types 0.7.0-1 install ok installed python3-attr python3-attr 25.3.0-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-bel-resources python3-bel-resources 0.0.3-4 install ok installed python3-bioregistry python3-bioregistry 0.11.12-3 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.3-1 install ok installed python3-click python3-click 8.2.0+0.really.8.1.8-1 install ok installed python3-click-plugins python3-click-plugins 1.1.1.2-1 install ok installed python3-curies python3-curies 0.9.0-1 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-dnspython python3-dnspython 2.7.0-1 install ok installed python3-email-validator python3-email-validator 2.2.0-1 install ok installed python3-greenlet python3-greenlet 3.1.0-1+b2 install ok installed python3-humanize python3-humanize 4.12.1-1 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-inflect python3-inflect 7.5.0-1 install ok installed python3-jaraco.context python3-jaraco.context 6.0.1-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jsonschema python3-jsonschema 4.25.1-2 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2023.12.1-2 install ok installed python3-minimal python3-minimal 3.13.7-1 install ok installed python3-more-itertools python3-more-itertools 10.8.0-1 install ok installed python3-multisplitby python3-multisplitby 0.0.1-6 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-numpy python3-numpy 1:2.2.4+ds-1.2 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.4+ds-1.2 install ok installed python3-pandas python3-pandas 2.3.2+dfsg-2 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.2+dfsg-2 install ok installed python3-pkg-resources python3-pkg-resources 78.1.1-0.1 install ok installed python3-pybel python3-pybel 0.15.5-2 install ok installed python3-pydantic python3-pydantic 2.12.0~a1-1 install ok installed python3-pydantic-core python3-pydantic-core 2.37.2-1 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pystow python3-pystow 0.5.5-2 install ok installed python3-pytz python3-pytz 2025.2-4 install ok installed python3-ratelimit python3-ratelimit 2.2.1-2 install ok installed python3-referencing python3-referencing 0.36.2-1 install ok installed python3-requests python3-requests 2.32.5+dfsg-1 install ok installed python3-requests-file python3-requests-file 2.1.0-1 install ok installed python3-rpds-py python3-rpds-py 0.21.0-2+b1 install ok installed python3-sortedcontainers python3-sortedcontainers 2.4.0-2 install ok installed python3-sqlalchemy python3-sqlalchemy 2.0.43+ds1-1 install ok installed python3-tabulate python3-tabulate 0.9.0-1 install ok installed python3-tqdm python3-tqdm 4.67.1-6 install ok installed python3-trie python3-trie 0.4.0+ds-1 install ok installed python3-typeguard python3-typeguard 4.4.4-1 install ok installed python3-typing-extensions python3-typing-extensions 4.15.0-1 install ok installed python3-typing-inspection python3-typing-inspection 0.4.1-2 install ok installed python3-urllib3 python3-urllib3 2.5.0-1 install ok installed python3.13 python3.13 3.13.7-1 install ok installed python3.13-minimal python3.13-minimal 3.13.7-1 install ok installed readline-common readline-common 8.3-3 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.2-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m56.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m56.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libjs-d3', 'libjs-jquery', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-autocommand', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-click-plugins', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-pytz', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-trie', 'python3-typeguard', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'python3-pybel'] 1m1.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 libjs-d3 libjs-jquery liblapack3 libncursesw6 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 media-types netbase openssl python3 python3-annotated-types python3-attr python3-autocommand python3-bel-resources python3-bioregistry python3-certifi python3-chardet python3-charset-normalizer python3-click python3-click-plugins python3-curies python3-dateutil python3-dnspython python3-email-validator python3-greenlet python3-humanize python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jsonschema python3-jsonschema-specifications python3-minimal python3-more-itertools python3-multisplitby python3-networkx python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pkg-resources python3-pybel python3-pydantic python3-pydantic-core python3-pyparsing python3-pystow python3-pytz python3-ratelimit python3-referencing python3-requests python3-requests-file python3-rpds-py python3-sortedcontainers python3-sqlalchemy python3-tabulate python3-tqdm python3-trie python3-typeguard python3-typing-extensions python3-typing-inspection python3-urllib3 python3.13 python3.13-minimal readline-common 0 upgraded, 0 newly installed, 71 to remove and 0 not upgraded. After this operation, 247 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14444 files and directories currently installed.) Removing python3-pybel (0.15.5-2) ... Removing python3-bel-resources (0.0.3-4) ... Removing python3-requests-file (2.1.0-1) ... Removing python3-bioregistry (0.11.12-3) ... Removing python3-pystow (0.5.5-2) ... Removing python3-requests (2.32.5+dfsg-1) ... Removing python3-certifi (2025.1.31+ds-1) ... Removing ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-pandas (2.3.2+dfsg-2) ... Removing python3-pandas-lib:amd64 (2.3.2+dfsg-2) ... Removing python3-numpy (1:2.2.4+ds-1.2) ... Removing liblapack3:amd64 (3.12.1-7) ... Removing libblas3:amd64 (3.12.1-7) ... Removing python3-jsonschema (4.25.1-2) ... Removing python3-jsonschema-specifications (2023.12.1-2) ... Removing python3-referencing (0.36.2-1) ... Removing python3-rpds-py (0.21.0-2+b1) ... Removing python3-tqdm (4.67.1-6) ... Removing python3-networkx (3.2.1-5) ... Removing python3-pkg-resources (78.1.1-0.1) ... Removing python3-inflect (7.5.0-1) ... Removing python3-typeguard (4.4.4-1) ... Removing python3-sqlalchemy (2.0.43+ds1-1) ... Removing python3-greenlet (3.1.0-1+b2) ... Removing python3-curies (0.9.0-1) ... Removing python3-trie (0.4.0+ds-1) ... Removing python3-sortedcontainers (2.4.0-2) ... Removing python3-pydantic (2.12.0~a1-1) ... Removing python3-annotated-types (0.7.0-1) ... Removing libgfortran5:amd64 (15.2.0-4) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing python3-email-validator (2.2.0-1) ... Removing python3-dnspython (2.7.0-1) ... Removing openssl (3.5.3-1) ... Removing python3-attr (25.3.0-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.3-1) ... Removing python3-click-plugins (1.1.1.2-1) ... Removing python3-click (8.2.0+0.really.8.1.8-1) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-humanize (4.12.1-1) ... Removing python3-idna (3.10-1) ... Removing python3-jaraco.context (6.0.1-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.8.0-1) ... Removing python3-multisplitby (0.0.1-6) ... Removing python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Removing python3-pydantic-core (2.37.2-1) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-pytz (2025.2-4) ... Removing python3-ratelimit (2.2.1-2) ... Removing python3-tabulate (0.9.0-1) ... Removing python3-typing-inspection (0.4.1-2) ... Removing python3-typing-extensions (4.15.0-1) ... Removing python3-urllib3 (2.5.0-1) ... Removing python3 (3.13.7-1) ... Removing python3-minimal (3.13.7-1) ... Removing python3.13 (3.13.7-1) ... Removing python3.13-minimal (3.13.7-1) ... Removing libexpat1:amd64 (2.7.3-1) ... Removing libpython3-stdlib:amd64 (3.13.7-1) ... Removing libpython3.13-stdlib:amd64 (3.13.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.5.2-2) ... Removing libncursesw6:amd64 (6.5+20250216-2) ... Removing libpython3.13-minimal:amd64 (3.13.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-3) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.3-3) ... Processing triggers for libc-bin (2.41-12) ... 1m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libjs-d3', 'libjs-jquery', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-autocommand', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-click-plugins', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-pytz', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-trie', 'python3-typeguard', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'python3-pybel'] 1m1.6s INFO: Running scripts post_remove 1m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_remove_exceptions'] 1m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_remove_exceptions'] 1m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg', '--purge', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libjs-d3', 'libjs-jquery', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-autocommand', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-click-plugins', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-pytz', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-trie', 'python3-typeguard', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common'] 1m1.9s DUMP: (Reading database ... 4946 files and directories currently installed.) Purging configuration files for ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libjs-d3 which isn't installed Purging configuration files for libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.7-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.3-3) ... Purging configuration files for media-types (13.0.0) ... Purging configuration files for netbase (6.5) ... Purging configuration files for openssl (3.5.3-1) ... Purging configuration files for python3 (3.13.7-1) ... dpkg: warning: ignoring request to remove python3-annotated-types which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-bel-resources which isn't installed dpkg: warning: ignoring request to remove python3-bioregistry which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-click-plugins which isn't installed dpkg: warning: ignoring request to remove python3-curies which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-dnspython which isn't installed dpkg: warning: ignoring request to remove python3-email-validator which isn't installed dpkg: warning: ignoring request to remove python3-greenlet which isn't installed dpkg: warning: ignoring request to remove python3-humanize which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed Purging configuration files for python3-jsonschema (4.25.1-2) ... dpkg: warning: ignoring request to remove python3-jsonschema-specifications which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-multisplitby which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed Purging configuration files for python3-numpy (1:2.2.4+ds-1.2) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pydantic which isn't installed dpkg: warning: ignoring request to remove python3-pydantic-core which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pystow which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-ratelimit which isn't installed dpkg: warning: ignoring request to remove python3-referencing which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-requests-file which isn't installed dpkg: warning: ignoring request to remove python3-rpds-py which isn't installed dpkg: warning: ignoring request to remove python3-sortedcontainers which isn't installed dpkg: warning: ignoring request to remove python3-sqlalchemy which isn't installed dpkg: warning: ignoring request to remove python3-tabulate which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-trie which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-typing-inspection which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.7-1) ... Purging configuration files for readline-common (8.3-3) ... 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg', '--purge', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libjs-d3', 'libjs-jquery', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-autocommand', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-click-plugins', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-pytz', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-trie', 'python3-typeguard', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common'] 1m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg', '--purge', 'python3-pybel'] 1m1.9s DUMP: dpkg: warning: ignoring request to remove python3-pybel which isn't installed 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg', '--purge', 'python3-pybel'] 1m1.9s INFO: Running scripts post_purge 1m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_purge_exceptions'] 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_purge_exceptions'] 1m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg', '--purge', '--pending'] 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg', '--purge', '--pending'] 1m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg', '--remove', '--pending'] 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg', '--remove', '--pending'] 1m1.9s INFO: Running scripts post_test 1m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_test_exceptions'] 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'tmp/scripts/post_test_exceptions'] 1m1.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 1m2.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 1m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg-divert', '--list'] 1m2.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'dpkg-divert', '--list'] 1m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', 'clean'] 1m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpphpt0e60', 'apt-get', 'clean'] 1m2.3s DEBUG: Recording chroot state 1m3.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/shm'] 1m3.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/shm'] 1m3.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/console'] 1m3.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/console'] 1m3.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/ptmx'] 1m3.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/ptmx'] 1m3.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/pts'] 1m3.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/dev/pts'] 1m3.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/proc'] 1m3.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpphpt0e60/proc'] 1m3.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 1m3.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpphpt0e60'] 1m3.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpphpt0e60 1m3.6s INFO: PASS: Upgrading between Debian distributions. 1m3.6s INFO: PASS: All tests. 1m3.6s INFO: piuparts run ends. ret=0 End: 2025-09-26 16:19:08 GMT