Start: 2026-10-23 03:17:53 GMT [testing] Package: python3-pybel Source: pybel Version: 0.15.5-5 Installed-Size: 1569 Maintainer: Debian Med Packaging Team Architecture: all Depends: libjs-d3, libjs-jquery, python3-bel-resources, python3-more-itertools, python3-networkx, python3-pyparsing, python3-ratelimit, python3-requests-file, python3-sqlalchemy, python3-tqdm, python3-bioregistry, python3-click, python3-humanize, python3-jsonschema, python3-pandas, python3-pystow, python3-requests, python3-tabulate, python3:any Suggests: python-pybel-doc Description: Biological Expression Language Homepage: https://pybel.readthedocs.io Description-md5: 7f907ff46c47b8a43a5a2fcaa1abff11 Section: science Priority: optional Filename: pool/main/p/pybel/python3-pybel_0.15.5-5_all.deb Size: 244344 MD5sum: df3524e96a8343b2af9dc286f46f2c8c SHA256: a0e6c1f622a887ba4b995d2e2a29461d0abc165bfee35c16b114aceae63bdae0 [sid] Package: python3-pybel Source: pybel Version: 0.15.5-6 Installed-Size: 1569 Maintainer: Debian Med Packaging Team Architecture: all Depends: libjs-d3, libjs-jquery, python3-bel-resources, python3-more-itertools, python3-networkx, python3-pyparsing, python3-ratelimit, python3-requests-file, python3-sqlalchemy, python3-tqdm, python3-bioregistry, python3-click, python3-humanize, python3-jsonschema, python3-pandas, python3-pystow, python3-requests, python3-tabulate, python3:any Suggests: python-pybel-doc Description: Biological Expression Language Homepage: https://pybel.readthedocs.io Commands: pybel Description-md5: 7f907ff46c47b8a43a5a2fcaa1abff11 Section: science Priority: optional Filename: pool/main/p/pybel/python3-pybel_0.15.5-6_all.deb Size: 244444 MD5sum: b0939dcba7ecb8356d7c7d601084d93e SHA256: ca1da838d5be6cdbe241295ea74e09dd127fa01141b4fab892e98982894928cc Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-pybel=0.15.5-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-pybel=0.15.5-6 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.113+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.113-1 (2026-10-15) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmppm5pcgb5 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmppm5pcgb5 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/16', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/16', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmppm5pcgb5/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', 'update'] 0m2.1s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6659 kB] Fetched 16.9 MB in 1s (15.3 MB/s) Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s DUMP: 6f3464c598a4863bd4675c81fdddd512 - 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s INFO: Running scripts post_setup 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_forbid_home'] 0m3.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_forbid_home'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m3.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m4.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m4.2s INFO: Running scripts is_testable 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s INFO: Running scripts pre_test 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_test_root_password'] 0m4.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_test_root_password'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'show', '--no-all-versions', 'python3-pybel'] 0m4.6s DUMP: Package: python3-pybel Source: pybel Version: 0.15.5-5 Installed-Size: 1569 Maintainer: Debian Med Packaging Team Architecture: all Depends: libjs-d3, libjs-jquery, python3-bel-resources, python3-more-itertools, python3-networkx, python3-pyparsing, python3-ratelimit, python3-requests-file, python3-sqlalchemy, python3-tqdm, python3-bioregistry, python3-click, python3-humanize, python3-jsonschema, python3-pandas, python3-pystow, python3-requests, python3-tabulate, python3:any Suggests: python-pybel-doc Description-en: Biological Expression Language PyBEL is a pure Python package for parsing and handling biological networks encoded in the Biological Expression Language (BEL) version 2. It also facilitates data interchange between common formats and databases such as NetworkX, JSON, CSV, SIF, Cytoscape, CX, NDEx, SQL, and Neo4J. . This package installs the library for Python 3. Description-md5: 7f907ff46c47b8a43a5a2fcaa1abff11 Homepage: https://pybel.readthedocs.io Section: science Priority: optional Filename: pool/main/p/pybel/python3-pybel_0.15.5-5_all.deb Size: 244344 MD5sum: df3524e96a8343b2af9dc286f46f2c8c SHA256: a0e6c1f622a887ba4b995d2e2a29461d0abc165bfee35c16b114aceae63bdae0 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'show', '--no-all-versions', 'python3-pybel'] 0m4.6s INFO: apt-cache knows about the following packages: python3-pybel 0m4.6s INFO: Running scripts pre_install 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy'] 0m4.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy', 'python3-pybel'] 0m4.7s DUMP: python3-pybel: Installed: (none) Candidate: 0.15.5-5 Version table: 0.15.5-5 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy', 'python3-pybel'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', '-y', 'install', 'python3-pybel'] 0m27.9s DUMP: Reading package lists... Building dependency tree... Solving dependencies... The following additional packages will be installed: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 libjs-d3 libjs-jquery liblapack3 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 media-types netbase openssl python3 python3-annotated-types python3-attr python3-bel-resources python3-bioregistry python3-certifi python3-chardet python3-charset-normalizer python3-click python3-curies python3-dateutil python3-dnspython python3-email-validator python3-greenlet python3-humanize python3-idna python3-jsonschema python3-jsonschema-specifications python3-minimal python3-more-itertools python3-multisplitby python3-networkx python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pydantic python3-pydantic-core python3-pyparsing python3-pystow python3-pytz python3-ratelimit python3-referencing python3-requests python3-requests-file python3-rpds-py python3-sqlalchemy python3-tabulate python3-tqdm python3-typing-extensions python3-typing-inspection python3-urllib3 python3.14 python3.14-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv python-attr-doc node-prismjs libjs-jquery-datatables libjs-vue python-charset-normalizer-doc python3-aioquic python3-trio python-greenlet-dev python-greenlet-doc python-jsonschema-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python-pybel-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-sqlalchemy-doc python3-asyncpg python3-pg8000 python3-psycopg2 python3-psycopg2cffi python3-aiosqlite python3-mariadb-connector python3-mysqldb python3-mysql.connector python3-pyodbc python3-pymssql python3-cx-oracle python3-oracledb python-typing-extensions-doc python3-brotli python3.14-venv python3.14-doc binutils binfmt-support readline-doc Recommended packages: javascript-common libgpm2 python3-cryptography python3-h2 python3-httpcore python3-httpx python3-fqdn python3-isoduration python3-json-pointer python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-uritemplate python3-webcolors python3-gdal python3-matplotlib python3-pydot python3-pygraphviz python3-scipy python3-yaml python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-sqlalchemy-ext The following NEW packages will be installed: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 libjs-d3 libjs-jquery liblapack3 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 media-types netbase openssl python3 python3-annotated-types python3-attr python3-bel-resources python3-bioregistry python3-certifi python3-chardet python3-charset-normalizer python3-click python3-curies python3-dateutil python3-dnspython python3-email-validator python3-greenlet python3-humanize python3-idna python3-jsonschema python3-jsonschema-specifications python3-minimal python3-more-itertools python3-multisplitby python3-networkx python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pybel python3-pydantic python3-pydantic-core python3-pyparsing python3-pystow python3-pytz python3-ratelimit python3-referencing python3-requests python3-requests-file python3-rpds-py python3-sqlalchemy python3-tabulate python3-tqdm python3-typing-extensions python3-typing-inspection python3-urllib3 python3.14 python3.14-minimal readline-common 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 60.2 MB of archives. After this operation, 279 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.9.0-1 [133 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libpython3.14-minimal amd64 3.14.8-1 [902 kB] Get:3 http://deb.debian.org/debian forky/main amd64 python3.14-minimal amd64 3.14.8-1 [2715 kB] Get:4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:5 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get:6 http://deb.debian.org/debian forky/main amd64 netbase all 6.6 [10.3 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-4 [74.8 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libpython3.14-stdlib amd64 3.14.8-1 [2367 kB] Get:13 http://deb.debian.org/debian forky/main amd64 python3.14 amd64 3.14.8-1 [874 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:15 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:16 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-4+b1 [138 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:18 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 16.2.0-3 [879 kB] Get:19 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:20 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.4.6+ds-4+b1 [5140 kB] Get:21 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:22 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20260816+nmu1 [134 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:25 http://deb.debian.org/debian forky/main amd64 python3-annotated-types all 0.8.0-1 [18.7 kB] Get:26 http://deb.debian.org/debian forky/main amd64 python3-attr all 26.1.0-1 [72.2 kB] Get:27 http://deb.debian.org/debian forky/main amd64 python3-multisplitby all 0.0.1-6 [4688 B] Get:28 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2026.7.22+ds-1 [9928 B] Get:29 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.7-2+b1 [190 kB] Get:30 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.20-1 [45.8 kB] Get:31 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.8.0-2 [125 kB] Get:32 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:33 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.34.2-1 [77.6 kB] Get:34 http://deb.debian.org/debian forky/main amd64 python3-requests-file all 3.0.1-1 [6920 B] Get:35 http://deb.debian.org/debian forky/main amd64 python3-click all 8.3.3-3 [107 kB] Get:36 http://deb.debian.org/debian forky/main amd64 python3-bel-resources all 0.0.3-4 [13.5 kB] Get:37 http://deb.debian.org/debian forky/main amd64 python3-dnspython all 2.8.0-6 [175 kB] Get:38 http://deb.debian.org/debian forky/main amd64 python3-email-validator all 2.3.0-1 [33.1 kB] Get:39 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:40 http://deb.debian.org/debian forky/main amd64 python3-pydantic-core amd64 2.46.5-2 [1610 kB] Get:41 http://deb.debian.org/debian forky/main amd64 python3-typing-inspection all 0.4.4-1 [14.1 kB] Get:42 http://deb.debian.org/debian forky/main amd64 python3-pydantic amd64 2.13.5-2 [389 kB] Get:43 http://deb.debian.org/debian forky/main amd64 python3-tqdm all 4.70.1-1 [91.3 kB] Get:44 http://deb.debian.org/debian forky/main amd64 python3-pystow all 0.9.8-1 [46.6 kB] Get:45 http://deb.debian.org/debian forky/main amd64 python3-curies all 0.15.1-1 [61.5 kB] Get:46 http://deb.debian.org/debian forky/main amd64 python3-bioregistry all 0.11.12-5 [3907 kB] Get:47 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:48 http://deb.debian.org/debian forky/main amd64 python3-greenlet amd64 3.3.2-4+b1 [181 kB] Get:49 http://deb.debian.org/debian forky/main amd64 python3-humanize all 4.16.0-1 [56.2 kB] Get:50 http://deb.debian.org/debian forky/main amd64 python3-rpds-py amd64 0.30.0-2+b1 [249 kB] Get:51 http://deb.debian.org/debian forky/main amd64 python3-referencing all 0.37.0+~2025.1.1-3 [24.1 kB] Get:52 http://deb.debian.org/debian forky/main amd64 python3-jsonschema-specifications all 2025.9.1-1 [9112 B] Get:53 http://deb.debian.org/debian forky/main amd64 python3-jsonschema all 4.26.0-3 [74.6 kB] Get:54 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 11.1.0-3 [74.7 kB] Get:55 http://deb.debian.org/debian forky/main amd64 python3-networkx all 3.4.2-6 [24.1 MB] Get:56 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2026.5-1 [34.5 kB] Get:57 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-5 [3919 kB] Get:58 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.3.3+dfsg-5 [2929 kB] Get:59 http://deb.debian.org/debian forky/main amd64 python3-pyparsing all 3.3.2-2 [165 kB] Get:60 http://deb.debian.org/debian forky/main amd64 python3-ratelimit all 2.2.1-2 [6108 B] Get:61 http://deb.debian.org/debian forky/main amd64 python3-sqlalchemy all 2.0.52+ds1-1 [1240 kB] Get:62 http://deb.debian.org/debian forky/main amd64 python3-tabulate all 0.10.0-1 [51.2 kB] Get:63 http://deb.debian.org/debian forky/main amd64 python3-pybel all 0.15.5-5 [244 kB] Preconfiguring packages ... Fetched 60.2 MB in 0s (197 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4950 files and directories currently installed.) Preparing to unpack .../libexpat1_2.9.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.9.0-1) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.8-1_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.8-1) ... Selecting previously unselected package python3.14-minimal. Preparing to unpack .../python3.14-minimal_3.14.8-1_amd64.deb ... Unpacking python3.14-minimal (3.14.8-1) ... Setting up libpython3.14-minimal:amd64 (3.14.8-1) ... Setting up libexpat1:amd64 (2.9.0-1) ... Setting up python3.14-minimal (3.14.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5306 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.14.7-3_amd64.deb ... Unpacking python3-minimal (3.14.7-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../06-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../08-libpython3.14-stdlib_3.14.8-1_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.8-1) ... Selecting previously unselected package python3.14. Preparing to unpack .../09-python3.14_3.14.8-1_amd64.deb ... Unpacking python3.14 (3.14.8-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../10-libpython3-stdlib_3.14.7-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3-minimal (3.14.7-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5836 files and directories currently installed.) Preparing to unpack .../00-python3_3.14.7-3_amd64.deb ... Unpacking python3 (3.14.7-3) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../01-python3-numpy-dev_1%3a2.4.6+ds-4+b1_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.4.6+ds-4+b1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../02-libblas3_3.12.1-8_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-8) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../03-libgfortran5_16.2.0-3_amd64.deb ... Unpacking libgfortran5:amd64 (16.2.0-3) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../04-liblapack3_3.12.1-8_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-8) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../05-python3-numpy_1%3a2.4.6+ds-4+b1_amd64.deb ... Unpacking python3-numpy (1:2.4.6+ds-4+b1) ... Selecting previously unselected package openssl. Preparing to unpack .../06-openssl_3.6.5-1_amd64.deb ... Unpacking openssl (3.6.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../07-ca-certificates_20260816+nmu1_all.deb ... Unpacking ca-certificates (20260816+nmu1) ... Selecting previously unselected package libjs-d3. Preparing to unpack .../08-libjs-d3_3.5.17-4_all.deb ... Unpacking libjs-d3 (3.5.17-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../09-libjs-jquery_3.7.1+dfsg+~3.5.33-1_all.deb ... Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Selecting previously unselected package python3-annotated-types. Preparing to unpack .../10-python3-annotated-types_0.8.0-1_all.deb ... Unpacking python3-annotated-types (0.8.0-1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../11-python3-attr_26.1.0-1_all.deb ... Unpacking python3-attr (26.1.0-1) ... Selecting previously unselected package python3-multisplitby. Preparing to unpack .../12-python3-multisplitby_0.0.1-6_all.deb ... Unpacking python3-multisplitby (0.0.1-6) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../13-python3-certifi_2026.7.22+ds-1_all.deb ... Unpacking python3-certifi (2026.7.22+ds-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../14-python3-charset-normalizer_3.4.7-2+b1_amd64.deb ... Unpacking python3-charset-normalizer (3.4.7-2+b1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../15-python3-idna_3.20-1_all.deb ... Unpacking python3-idna (3.20-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../16-python3-urllib3_2.8.0-2_all.deb ... Unpacking python3-urllib3 (2.8.0-2) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../17-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../18-python3-requests_2.34.2-1_all.deb ... Unpacking python3-requests (2.34.2-1) ... Selecting previously unselected package python3-requests-file. Preparing to unpack .../19-python3-requests-file_3.0.1-1_all.deb ... Unpacking python3-requests-file (3.0.1-1) ... Selecting previously unselected package python3-click. Preparing to unpack .../20-python3-click_8.3.3-3_all.deb ... Unpacking python3-click (8.3.3-3) ... Selecting previously unselected package python3-bel-resources. Preparing to unpack .../21-python3-bel-resources_0.0.3-4_all.deb ... Unpacking python3-bel-resources (0.0.3-4) ... Selecting previously unselected package python3-dnspython. Preparing to unpack .../22-python3-dnspython_2.8.0-6_all.deb ... Unpacking python3-dnspython (2.8.0-6) ... Selecting previously unselected package python3-email-validator. Preparing to unpack .../23-python3-email-validator_2.3.0-1_all.deb ... Unpacking python3-email-validator (2.3.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../24-python3-typing-extensions_4.16.0-5_all.deb ... Unpacking python3-typing-extensions (4.16.0-5) ... Selecting previously unselected package python3-pydantic-core. Preparing to unpack .../25-python3-pydantic-core_2.46.5-2_amd64.deb ... Unpacking python3-pydantic-core (2.46.5-2) ... Selecting previously unselected package python3-typing-inspection. Preparing to unpack .../26-python3-typing-inspection_0.4.4-1_all.deb ... Unpacking python3-typing-inspection (0.4.4-1) ... Selecting previously unselected package python3-pydantic. Preparing to unpack .../27-python3-pydantic_2.13.5-2_amd64.deb ... Unpacking python3-pydantic (2.13.5-2) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../28-python3-tqdm_4.70.1-1_all.deb ... Unpacking python3-tqdm (4.70.1-1) ... Selecting previously unselected package python3-pystow. Preparing to unpack .../29-python3-pystow_0.9.8-1_all.deb ... Unpacking python3-pystow (0.9.8-1) ... Selecting previously unselected package python3-curies. Preparing to unpack .../30-python3-curies_0.15.1-1_all.deb ... Unpacking python3-curies (0.15.1-1) ... Selecting previously unselected package python3-bioregistry. Preparing to unpack .../31-python3-bioregistry_0.11.12-5_all.deb ... Unpacking python3-bioregistry (0.11.12-5) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../32-python3-dateutil_2.9.0-5_all.deb ... Unpacking python3-dateutil (2.9.0-5) ... Selecting previously unselected package python3-greenlet. Preparing to unpack .../33-python3-greenlet_3.3.2-4+b1_amd64.deb ... Unpacking python3-greenlet (3.3.2-4+b1) ... Selecting previously unselected package python3-humanize. Preparing to unpack .../34-python3-humanize_4.16.0-1_all.deb ... Unpacking python3-humanize (4.16.0-1) ... Selecting previously unselected package python3-rpds-py. Preparing to unpack .../35-python3-rpds-py_0.30.0-2+b1_amd64.deb ... Unpacking python3-rpds-py (0.30.0-2+b1) ... Selecting previously unselected package python3-referencing. Preparing to unpack .../36-python3-referencing_0.37.0+~2025.1.1-3_all.deb ... Unpacking python3-referencing (0.37.0+~2025.1.1-3) ... Selecting previously unselected package python3-jsonschema-specifications. Preparing to unpack .../37-python3-jsonschema-specifications_2025.9.1-1_all.deb ... Unpacking python3-jsonschema-specifications (2025.9.1-1) ... Selecting previously unselected package python3-jsonschema. Preparing to unpack .../38-python3-jsonschema_4.26.0-3_all.deb ... Unpacking python3-jsonschema (4.26.0-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../39-python3-more-itertools_11.1.0-3_all.deb ... Unpacking python3-more-itertools (11.1.0-3) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../40-python3-networkx_3.4.2-6_all.deb ... Unpacking python3-networkx (3.4.2-6) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../41-python3-pytz_2026.5-1_all.deb ... Unpacking python3-pytz (2026.5-1) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../42-python3-pandas-lib_2.3.3+dfsg-5_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-5) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../43-python3-pandas_2.3.3+dfsg-5_all.deb ... Unpacking python3-pandas (2.3.3+dfsg-5) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../44-python3-pyparsing_3.3.2-2_all.deb ... Unpacking python3-pyparsing (3.3.2-2) ... Selecting previously unselected package python3-ratelimit. Preparing to unpack .../45-python3-ratelimit_2.2.1-2_all.deb ... Unpacking python3-ratelimit (2.2.1-2) ... Selecting previously unselected package python3-sqlalchemy. Preparing to unpack .../46-python3-sqlalchemy_2.0.52+ds1-1_all.deb ... Unpacking python3-sqlalchemy (2.0.52+ds1-1) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../47-python3-tabulate_0.10.0-1_all.deb ... Unpacking python3-tabulate (0.10.0-1) ... Selecting previously unselected package python3-pybel. Preparing to unpack .../48-python3-pybel_0.15.5-5_all.deb ... Unpacking python3-pybel (0.15.5-5) ... Setting up media-types (14.0.0) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjs-d3 (3.5.17-4) ... Setting up python3-numpy-dev:amd64 (1:2.4.6+ds-4+b1) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libgfortran5:amd64 (16.2.0-3) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up netbase (6.6) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up openssl (3.6.5-1) ... Setting up readline-common (8.3-4) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 120 added, 0 removed; done. Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libpython3.14-stdlib:amd64 (3.14.8-1) ... Setting up python3.14 (3.14.8-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3 (3.14.7-3) ... Setting up python3-click (8.3.3-3) ... Setting up python3-networkx (3.4.2-6) ... Setting up python3-annotated-types (0.8.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.3.2-2) ... Setting up python3-certifi (2026.7.22+ds-1) ... Setting up python3-multisplitby (0.0.1-6) ... Setting up python3-greenlet (3.3.2-4+b1) ... Setting up python3-idna (3.20-1) ... Setting up python3-typing-extensions (4.16.0-5) ... Setting up python3-numpy (1:2.4.6+ds-4+b1) ... Setting up python3-urllib3 (2.8.0-2) ... Setting up python3-rpds-py (0.30.0-2+b1) ... Setting up python3-dnspython (2.8.0-6) ... Setting up python3-dateutil (2.9.0-5) ... Setting up python3-email-validator (2.3.0-1) ... Setting up python3-humanize (4.16.0-1) ... Setting up python3-ratelimit (2.2.1-2) ... Setting up python3-more-itertools (11.1.0-3) ... Setting up python3-attr (26.1.0-1) ... Setting up python3-pydantic-core (2.46.5-2) ... Setting up python3-typing-inspection (0.4.4-1) ... Setting up python3-charset-normalizer (3.4.7-2+b1) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-5) ... Setting up python3-tqdm (4.70.1-1) ... Setting up python3-tabulate (0.10.0-1) ... Setting up python3-pytz (2026.5-1) ... Setting up python3-sqlalchemy (2.0.52+ds1-1) ... Setting up python3-pandas (2.3.3+dfsg-5) ... Setting up python3-pydantic (2.13.5-2) ... Setting up python3-requests (2.34.2-1) ... Setting up python3-pystow (0.9.8-1) ... Setting up python3-requests-file (3.0.1-1) ... Setting up python3-curies (0.15.1-1) ... Setting up python3-referencing (0.37.0+~2025.1.1-3) ... Setting up python3-bioregistry (0.11.12-5) ... Setting up python3-bel-resources (0.0.3-4) ... Setting up python3-jsonschema-specifications (2025.9.1-1) ... Setting up python3-jsonschema (4.26.0-3) ... Setting up python3-pybel (0.15.5-5) ... Processing triggers for libc-bin (2.43-7) ... Processing triggers for ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', '-y', 'install', 'python3-pybel'] 0m27.9s INFO: Running scripts post_install 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_install_exceptions'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_install_exceptions'] 0m27.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m28.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m28.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmppm5pcgb5 to sid 0m28.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m28.8s INFO: Running scripts pre_distupgrade 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_distupgrade_exceptions'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_distupgrade_exceptions'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', 'update'] 0m31.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7749 kB] Fetched 18.7 MB in 2s (9434 kB/s) Reading package lists... 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', 'update'] 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', '-yf', 'dist-upgrade'] 0m41.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg7.0 libaudit-common libaudit1 libsystemd0 libudev1 python3-certifi python3-more-itertools python3-networkx python3-numpy python3-numpy-dev python3-pybel python3-pydantic python3-pydantic-core python3-pyparsing python3-rpds-py 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 35.6 MB of archives. After this operation, 159 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 262.1-1 [512 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 262.1-1 [149 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.3.4 [1286 kB] Get:4 http://deb.debian.org/debian sid/main amd64 apt amd64 3.3.4 [1574 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.4.6+ds-5 [5139 kB] Get:6 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-5 [137 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:9 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2026.10.19+ds-1 [9948 B] Get:10 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 11.2.1-1 [77.9 kB] Get:11 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.4.2-7 [23.9 MB] Get:12 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.3.3-2 [168 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3-pybel all 0.15.5-6 [244 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3-pydantic amd64 2.14.1-1 [406 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3-pydantic-core amd64 2.50.1-2 [1683 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-rpds-py amd64 0.30.0-3 [248 kB] Fetched 35.6 MB in 0s (216 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14694 files and directories currently installed.) Preparing to unpack .../libsystemd0_262.1-1_amd64.deb ... Unpacking libsystemd0:amd64 (262.1-1) over (262-1) ... Setting up libsystemd0:amd64 (262.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14694 files and directories currently installed.) Preparing to unpack .../libudev1_262.1-1_amd64.deb ... Unpacking libudev1:amd64 (262.1-1) over (262-1) ... Setting up libudev1:amd64 (262.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14694 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.3.4_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.3.4) over (3.3.3) ... Setting up libapt-pkg7.0:amd64 (3.3.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14694 files and directories currently installed.) Preparing to unpack .../archives/apt_3.3.4_amd64.deb ... Unpacking apt (3.3.4) over (3.3.3) ... Setting up apt (3.3.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14694 files and directories currently installed.) Preparing to unpack .../python3-numpy_1%3a2.4.6+ds-5_amd64.deb ... Unpacking python3-numpy (1:2.4.6+ds-5) over (1:2.4.6+ds-4+b1) ... Preparing to unpack .../python3-numpy-dev_1%3a2.4.6+ds-5_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.4.6+ds-5) over (1:2.4.6+ds-4+b1) ... Preparing to unpack .../libaudit-common_1%3a4.2.1-1_all.deb ... Unpacking libaudit-common (1:4.2.1-1) over (1:4.1.2-1) ... Setting up libaudit-common (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14692 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.2.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.2.1-1) over (1:4.1.2-1+b2) ... Setting up libaudit1:amd64 (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14691 files and directories currently installed.) Preparing to unpack .../0-python3-certifi_2026.10.19+ds-1_all.deb ... Unpacking python3-certifi (2026.10.19+ds-1) over (2026.7.22+ds-1) ... Preparing to unpack .../1-python3-more-itertools_11.2.1-1_all.deb ... Unpacking python3-more-itertools (11.2.1-1) over (11.1.0-3) ... Preparing to unpack .../2-python3-networkx_3.4.2-7_all.deb ... Unpacking python3-networkx (3.4.2-7) over (3.4.2-6) ... Preparing to unpack .../3-python3-pyparsing_3.3.3-2_all.deb ... Unpacking python3-pyparsing (3.3.3-2) over (3.3.2-2) ... Preparing to unpack .../4-python3-pybel_0.15.5-6_all.deb ... Unpacking python3-pybel (0.15.5-6) over (0.15.5-5) ... Preparing to unpack .../5-python3-pydantic_2.14.1-1_amd64.deb ... Unpacking python3-pydantic (2.14.1-1) over (2.13.5-2) ... Preparing to unpack .../6-python3-pydantic-core_2.50.1-2_amd64.deb ... Unpacking python3-pydantic-core (2.50.1-2) over (2.46.5-2) ... Preparing to unpack .../7-python3-rpds-py_0.30.0-3_amd64.deb ... Unpacking python3-rpds-py (0.30.0-3) over (0.30.0-2+b1) ... Setting up python3-more-itertools (11.2.1-1) ... Setting up python3-pydantic-core (2.50.1-2) ... Setting up python3-networkx (3.4.2-7) ... Setting up python3-pyparsing (3.3.3-2) ... Setting up python3-certifi (2026.10.19+ds-1) ... Setting up python3-pydantic (2.14.1-1) ... Setting up python3-numpy-dev:amd64 (1:2.4.6+ds-5) ... Setting up python3-numpy (1:2.4.6+ds-5) ... Setting up python3-rpds-py (0.30.0-3) ... Setting up python3-pybel (0.15.5-6) ... Processing triggers for libc-bin (2.43-7) ... 0m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', '-yf', 'dist-upgrade'] 0m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m42.9s DUMP: 862a7d01651a386b84c58ba7646bb731 - 0m42.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m42.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'show', '--no-all-versions', 'python3-pybel'] 0m43.2s DUMP: Package: python3-pybel Source: pybel Version: 0.15.5-6 Installed-Size: 1569 Maintainer: Debian Med Packaging Team Architecture: all Depends: libjs-d3, libjs-jquery, python3-bel-resources, python3-more-itertools, python3-networkx, python3-pyparsing, python3-ratelimit, python3-requests-file, python3-sqlalchemy, python3-tqdm, python3-bioregistry, python3-click, python3-humanize, python3-jsonschema, python3-pandas, python3-pystow, python3-requests, python3-tabulate, python3:any Suggests: python-pybel-doc Description-en: Biological Expression Language PyBEL is a pure Python package for parsing and handling biological networks encoded in the Biological Expression Language (BEL) version 2. It also facilitates data interchange between common formats and databases such as NetworkX, JSON, CSV, SIF, Cytoscape, CX, NDEx, SQL, and Neo4J. . This package installs the library for Python 3. Description-md5: 7f907ff46c47b8a43a5a2fcaa1abff11 Homepage: https://pybel.readthedocs.io Commands: pybel Section: science Priority: optional Filename: pool/main/p/pybel/python3-pybel_0.15.5-6_all.deb Size: 244444 MD5sum: b0939dcba7ecb8356d7c7d601084d93e SHA256: ca1da838d5be6cdbe241295ea74e09dd127fa01141b4fab892e98982894928cc 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'show', '--no-all-versions', 'python3-pybel'] 0m43.2s INFO: apt-cache knows about the following packages: python3-pybel 0m43.2s INFO: Running scripts pre_install 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_database-server'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_database-server'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_exceptions'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_exceptions'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_extras'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_extras'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy'] 0m43.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy', 'python3-pybel'] 0m43.3s DUMP: python3-pybel: Installed: 0.15.5-6 Candidate: 0.15.5-6 Version table: *** 0.15.5-6 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy', 'python3-pybel'] 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', '-y', 'install', 'python3-pybel'] 0m44.0s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-pybel is already the newest version (0.15.5-6). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', '-y', 'install', 'python3-pybel'] 0m44.0s INFO: Running scripts post_install 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_install_exceptions'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_install_exceptions'] 0m44.0s INFO: Running scripts post_distupgrade 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_distupgrade_exceptions'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_distupgrade_exceptions'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_distupgrade_zz_backports'] 0m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_distupgrade_zz_backports'] 0m44.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m45.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m45.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m46.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m46.0s INFO: Running scripts pre_install 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_database-server'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_database-server'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_exceptions'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_exceptions'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_extras'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_extras'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy'] 0m46.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy', 'python3-pybel'] 0m46.1s DUMP: python3-pybel: Installed: 0.15.5-6 Candidate: 0.15.5-6 Version table: *** 0.15.5-6 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m46.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-cache', 'policy', 'python3-pybel'] 0m46.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', '-y', 'install', 'python3-pybel=0.15.5-6'] 0m47.0s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-pybel is already the newest version (0.15.5-6). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', '-y', 'install', 'python3-pybel=0.15.5-6'] 0m47.0s INFO: Running scripts post_install 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_install_exceptions'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_install_exceptions'] 0m47.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m47.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m48.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', '-ac', '--ignore-obsolete'] 0m50.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', '-ac', '--ignore-obsolete'] 0m50.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m50.0s DUMP: 0.17.5+b5 0m50.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m50.0s INFO: Running adequate version 0.17.5+b5 now. 0m50.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'python3-pybel'] 0m50.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'python3-pybel'] 0m50.0s INFO: Running scripts pre_remove 0m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_exceptions'] 0m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/pre_remove_exceptions'] 0m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m50.9s DUMP: install ok installed apt apt 3.3.4 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed ca-certificates ca-certificates 20260816+nmu1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.4 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libexpat1:amd64 libexpat1 2.9.0-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.8-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.8-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262.1-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed openssl openssl 3.6.5-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed python3 python3 3.14.7-3 install ok installed python3-annotated-types python3-annotated-types 0.8.0-1 install ok installed python3-attr python3-attr 26.1.0-1 install ok installed python3-bel-resources python3-bel-resources 0.0.3-4 install ok installed python3-bioregistry python3-bioregistry 0.11.12-5 install ok installed python3-certifi python3-certifi 2026.10.19+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.7-2+b1 install ok installed python3-click python3-click 8.3.3-3 install ok installed python3-curies python3-curies 0.15.1-1 install ok installed python3-dateutil python3-dateutil 2.9.0-5 install ok installed python3-dnspython python3-dnspython 2.8.0-6 install ok installed python3-email-validator python3-email-validator 2.3.0-1 install ok installed python3-greenlet python3-greenlet 3.3.2-4+b1 install ok installed python3-humanize python3-humanize 4.16.0-1 install ok installed python3-idna python3-idna 3.20-1 install ok installed python3-jsonschema python3-jsonschema 4.26.0-3 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2025.9.1-1 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3-more-itertools python3-more-itertools 11.2.1-1 install ok installed python3-multisplitby python3-multisplitby 0.0.1-6 install ok installed python3-networkx python3-networkx 3.4.2-7 install ok installed python3-numpy python3-numpy 1:2.4.6+ds-5 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.4.6+ds-5 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-5 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-5 install ok installed python3-pybel python3-pybel 0.15.5-6 install ok installed python3-pydantic python3-pydantic 2.14.1-1 install ok installed python3-pydantic-core python3-pydantic-core 2.50.1-2 install ok installed python3-pyparsing python3-pyparsing 3.3.3-2 install ok installed python3-pystow python3-pystow 0.9.8-1 install ok installed python3-pytz python3-pytz 2026.5-1 install ok installed python3-ratelimit python3-ratelimit 2.2.1-2 install ok installed python3-referencing python3-referencing 0.37.0+~2025.1.1-3 install ok installed python3-requests python3-requests 2.34.2-1 install ok installed python3-requests-file python3-requests-file 3.0.1-1 install ok installed python3-rpds-py python3-rpds-py 0.30.0-3 install ok installed python3-sqlalchemy python3-sqlalchemy 2.0.52+ds1-1 install ok installed python3-tabulate python3-tabulate 0.10.0-1 install ok installed python3-tqdm python3-tqdm 4.70.1-1 install ok installed python3-typing-extensions python3-typing-extensions 4.16.0-5 install ok installed python3-typing-inspection python3-typing-inspection 0.4.4-1 install ok installed python3-urllib3 python3-urllib3 2.8.0-2 install ok installed python3.14 python3.14 3.14.8-1 install ok installed python3.14-minimal python3.14-minimal 3.14.8-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libjs-d3', 'libjs-jquery', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-pytz', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'readline-common', 'python3-pybel'] 0m58.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 libjs-d3 libjs-jquery liblapack3 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 media-types netbase openssl python3 python3-annotated-types python3-attr python3-bel-resources python3-bioregistry python3-certifi python3-chardet python3-charset-normalizer python3-click python3-curies python3-dateutil python3-dnspython python3-email-validator python3-greenlet python3-humanize python3-idna python3-jsonschema python3-jsonschema-specifications python3-minimal python3-more-itertools python3-multisplitby python3-networkx python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pybel python3-pydantic python3-pydantic-core python3-pyparsing python3-pystow python3-pytz python3-ratelimit python3-referencing python3-requests python3-requests-file python3-rpds-py python3-sqlalchemy python3-tabulate python3-tqdm python3-typing-extensions python3-typing-inspection python3-urllib3 python3.14 python3.14-minimal readline-common 0 upgraded, 0 newly installed, 63 to remove and 0 not upgraded. After this operation, 279 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14692 files and directories currently installed.) Removing python3-pybel (0.15.5-6) ... Removing python3-bel-resources (0.0.3-4) ... Removing python3-requests-file (3.0.1-1) ... Removing python3-bioregistry (0.11.12-5) ... Removing python3-requests (2.34.2-1) ... Removing python3-certifi (2026.10.19+ds-1) ... Removing ca-certificates (20260816+nmu1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-pandas (2.3.3+dfsg-5) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-5) ... Removing python3-numpy (1:2.4.6+ds-5) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing python3-jsonschema (4.26.0-3) ... Removing python3-jsonschema-specifications (2025.9.1-1) ... Removing python3-referencing (0.37.0+~2025.1.1-3) ... Removing python3-rpds-py (0.30.0-3) ... Removing python3-curies (0.15.1-1) ... Removing python3-pystow (0.9.8-1) ... Removing python3-tqdm (4.70.1-1) ... Removing python3-sqlalchemy (2.0.52+ds1-1) ... Removing python3-greenlet (3.3.2-4+b1) ... Removing python3-urllib3 (2.8.0-2) ... Removing libgfortran5:amd64 (16.2.0-3) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing python3-pydantic (2.14.1-1) ... Removing python3-email-validator (2.3.0-1) ... Removing python3-dnspython (2.8.0-6) ... Removing openssl (3.6.5-1) ... Removing python3-annotated-types (0.8.0-1) ... Removing python3-attr (26.1.0-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.7-2+b1) ... Removing python3-click (8.3.3-3) ... Removing python3-dateutil (2.9.0-5) ... Removing python3-humanize (4.16.0-1) ... Removing python3-idna (3.20-1) ... Removing python3-more-itertools (11.2.1-1) ... Removing python3-multisplitby (0.0.1-6) ... Removing python3-networkx (3.4.2-7) ... Removing python3-numpy-dev:amd64 (1:2.4.6+ds-5) ... Removing python3-pydantic-core (2.50.1-2) ... Removing python3-pyparsing (3.3.3-2) ... Removing python3-pytz (2026.5-1) ... Removing python3-ratelimit (2.2.1-2) ... Removing python3-tabulate (0.10.0-1) ... Removing python3-typing-inspection (0.4.4-1) ... Removing python3-typing-extensions (4.16.0-5) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.8-1) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.8-1) ... Removing libexpat1:amd64 (2.9.0-1) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libpython3.14-minimal:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.43-7) ... 0m58.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libjs-d3', 'libjs-jquery', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-pytz', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'readline-common', 'python3-pybel'] 0m58.0s INFO: Running scripts post_remove 0m58.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_remove_exceptions'] 0m58.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_remove_exceptions'] 0m58.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg', '--purge', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libjs-d3', 'libjs-jquery', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-pytz', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m58.2s DUMP: (Reading database ... 4959 files and directories currently installed.) Purging configuration files for ca-certificates (20260816+nmu1) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libjs-d3 which is not installed Purging configuration files for libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.8-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.6) ... Purging configuration files for openssl (3.6.5-1) ... Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-annotated-types which is not installed dpkg: warning: ignoring request to remove python3-attr which is not installed dpkg: warning: ignoring request to remove python3-bel-resources which is not installed dpkg: warning: ignoring request to remove python3-bioregistry which is not installed dpkg: warning: ignoring request to remove python3-certifi which is not installed dpkg: warning: ignoring request to remove python3-chardet which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-click which is not installed dpkg: warning: ignoring request to remove python3-curies which is not installed dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-dnspython which is not installed dpkg: warning: ignoring request to remove python3-email-validator which is not installed dpkg: warning: ignoring request to remove python3-greenlet which is not installed dpkg: warning: ignoring request to remove python3-humanize which is not installed dpkg: warning: ignoring request to remove python3-idna which is not installed Purging configuration files for python3-jsonschema (4.26.0-3) ... dpkg: warning: ignoring request to remove python3-jsonschema-specifications which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-more-itertools which is not installed dpkg: warning: ignoring request to remove python3-multisplitby which is not installed dpkg: warning: ignoring request to remove python3-networkx which is not installed Purging configuration files for python3-numpy (1:2.4.6+ds-5) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-pandas which is not installed dpkg: warning: ignoring request to remove python3-pandas-lib which is not installed dpkg: warning: ignoring request to remove python3-pydantic which is not installed dpkg: warning: ignoring request to remove python3-pydantic-core which is not installed dpkg: warning: ignoring request to remove python3-pyparsing which is not installed dpkg: warning: ignoring request to remove python3-pystow which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3-ratelimit which is not installed dpkg: warning: ignoring request to remove python3-referencing which is not installed dpkg: warning: ignoring request to remove python3-requests which is not installed dpkg: warning: ignoring request to remove python3-requests-file which is not installed dpkg: warning: ignoring request to remove python3-rpds-py which is not installed dpkg: warning: ignoring request to remove python3-sqlalchemy which is not installed dpkg: warning: ignoring request to remove python3-tabulate which is not installed dpkg: warning: ignoring request to remove python3-tqdm which is not installed dpkg: warning: ignoring request to remove python3-typing-extensions which is not installed dpkg: warning: ignoring request to remove python3-typing-inspection which is not installed dpkg: warning: ignoring request to remove python3-urllib3 which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.8-1) ... Purging configuration files for readline-common (8.3-4) ... 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg', '--purge', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libjs-d3', 'libjs-jquery', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-pytz', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg', '--purge', 'python3-pybel'] 0m58.2s DUMP: dpkg: warning: ignoring request to remove python3-pybel which is not installed 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg', '--purge', 'python3-pybel'] 0m58.2s INFO: Running scripts post_purge 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_purge_exceptions'] 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_purge_exceptions'] 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg', '--purge', '--pending'] 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg', '--purge', '--pending'] 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg', '--remove', '--pending'] 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg', '--remove', '--pending'] 0m58.2s INFO: Running scripts post_test 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_test_exceptions'] 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'tmp/scripts/post_test_exceptions'] 0m58.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m58.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg-divert', '--list'] 0m58.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'dpkg-divert', '--list'] 0m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', 'clean'] 0m58.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5', 'apt-get', 'clean'] 0m58.6s DEBUG: Recording chroot state 0m59.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/shm'] 0m59.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/shm'] 0m59.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/console'] 0m59.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/console'] 0m59.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/ptmx'] 0m59.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/ptmx'] 0m59.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/pts'] 0m59.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/dev/pts'] 0m59.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/proc'] 0m59.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5/proc'] 0m59.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m59.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppm5pcgb5'] 0m59.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmppm5pcgb5 0m59.7s INFO: PASS: Upgrading between Debian distributions. 0m59.7s INFO: PASS: All tests. 0m59.7s INFO: piuparts run ends. ret=0 End: 2026-10-23 03:18:53 GMT