Start: 2023-12-06 03:29:01 GMT [testing] Package: python3-pychopper Source: pychopper Version: 2.7.2-1 Installed-Size: 407 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-parasail, python3-pytest, python3-six, python3-tqdm, python3:any Description: identify, orient and trim full-length Nanopore cDNA reads Homepage: https://github.com/epi2me-labs/pychopper Description-md5: c82f4d6ea954d4a2adb49d0cbebcb404 Section: python Priority: optional Filename: pool/main/p/pychopper/python3-pychopper_2.7.2-1_all.deb Size: 136472 MD5sum: a2872c13535cb005fc89782c27007558 SHA256: ed6c2d1838529fd4af9a863753b50575ee0ea8a70c20fc3c7a1315a3ecad49b0 [sid] Package: python3-pychopper Source: pychopper Version: 2.7.9-1 Installed-Size: 406 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-parasail, python3-pysam, python3-pytest, python3-six, python3-tqdm, python3:any Description: identify, orient and trim full-length Nanopore cDNA reads Homepage: https://github.com/epi2me-labs/pychopper Description-md5: c2116885230163a610c0268475202885 Section: python Priority: optional Filename: pool/main/p/pychopper/python3-pychopper_2.7.9-1_all.deb Size: 136580 MD5sum: 7c41500ca44a8fee3807e90c5386f485 SHA256: a919f8a0391b40541f638df3a58fa43b4ff60cabb42745b6c0010655578d7257 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-pychopper=2.7.9-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-pychopper=2.7.9-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-26-amd64 #1 SMP Debian 5.10.197-1 (2023-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpul3ovlq_ 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpul3ovlq_ 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/proc'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/proc'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpul3ovlq_/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', 'update'] 0m2.2s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.9s DUMP: 6deb31383f0b3f5ce38f822020ad491f - 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.9s INFO: Running scripts post_setup 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u2 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u2 install ok installed libc6:amd64 libc6 2.36-9+deb12u2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.17-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.17-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-5 install ok installed usr-is-merged usr-is-merged 35 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m3.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 0m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 0m4.1s INFO: Running scripts is_testable 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s INFO: Running scripts pre_test 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_test_root_password'] 0m4.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_test_root_password'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'show', '--no-all-versions', 'python3-pychopper'] 0m4.3s DUMP: Package: python3-pychopper Source: pychopper Version: 2.7.2-1 Installed-Size: 407 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-parasail, python3-pytest, python3-six, python3-tqdm, python3:any Description-en: identify, orient and trim full-length Nanopore cDNA reads Pychopper v2 is a Python module to identify, orient and trim full-length Nanopore cDNA reads. It is also able to rescue fused reads and provides the script 'cdna_classifier.py'. The general approach of Pychopper v2 is the following: . * Pychopper first identifies alignment hits of the primers across the length of the sequence. The default method for doing this is using nhmmscan with the pre-trained strand specific profile HMMs, included with the package. Alternatively, one can use the edlib backend, which uses a combination of global and local alignment to identify the primers within the read. * After identifying the primer hits by either of the backends, the reads are divided into segments defined by two consecutive primer hits. The score of a segment is its length if the configuration of the flanking primer hits is valid (such as SPP,-VNP for forward reads) or zero otherwise. * The segments are assigned to rescued reads using a dynamic programming algorithm maximizing the sum of used segment scores (hence the amount of rescued bases). A crucial observation about the algorithm is that if a segment is included as a rescued read, then the next segment must be excluded as one of the primer hits defining it was "used up" by the previous segment. This put constraints on the dynamic programming graph. The arrows in read define the optimal path for rescuing two fused reads with the a total score of l1 + l3. . A crucial parameter of Pychopper v2 is -q, which determines the stringency of primer alignment (E-value in the case of the pHMM backend). This can be explicitly specified by the user, however by default it is optimized on a random sample of input reads to produce the maximum number of classified reads. Description-md5: c82f4d6ea954d4a2adb49d0cbebcb404 Homepage: https://github.com/epi2me-labs/pychopper Section: python Priority: optional Filename: pool/main/p/pychopper/python3-pychopper_2.7.2-1_all.deb Size: 136472 MD5sum: a2872c13535cb005fc89782c27007558 SHA256: ed6c2d1838529fd4af9a863753b50575ee0ea8a70c20fc3c7a1315a3ecad49b0 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'show', '--no-all-versions', 'python3-pychopper'] 0m4.3s INFO: apt-cache knows about the following packages: python3-pychopper 0m4.3s INFO: Running scripts pre_install 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy'] 0m4.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.2,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy', 'python3-pychopper'] 0m4.5s DUMP: python3-pychopper: Installed: (none) Candidate: 2.7.2-1 Version table: 2.7.2-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy', 'python3-pychopper'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', '-y', 'install', 'python3-pychopper'] 1m22.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt cpp cpp-12 fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libparasail-dev libparasail8 libperl5.36 libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libstdc++-12-dev libtcl8.6 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 linux-libc-dev mailcap media-types mime-support perl perl-modules-5.36 python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-biopython python3-brotli python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-gast python3-iniconfig python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parasail python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-ply python3-py python3-pyparsing python3-pytest python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-wheel python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev Suggested packages: binutils-doc blt-demo cpp-doc gcc-12-locales cpp-12-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc gdbm-l10n low-memory-monitor krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils sensible-utils libstdc++-12-doc tcl8.6 tk8.6 libxsimd-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran python-pandas-doc python3-statsmodels python-pil-doc python3-setuptools python-ply-doc subversion python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.11-venv python3.11-doc binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: manpages manpages-dev libc-devtools libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libgpm2 bzip2 file xz-utils netbase python-biopython-doc ncbi-blast+ python3-bs4 python3-html5lib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-tables python3-jinja2 python3-numba python3-olefile python3-pygments isympy-common ca-certificates The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt cpp cpp-12 fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libparasail-dev libparasail8 libperl5.36 libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libstdc++-12-dev libtcl8.6 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 linux-libc-dev mailcap media-types mime-support perl perl-modules-5.36 python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-biopython python3-brotli python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-gast python3-iniconfig python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parasail python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-ply python3-py python3-pychopper python3-pyparsing python3-pytest python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-wheel python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 189 newly installed, 0 to remove and 0 not upgraded. Need to get 209 MB of archives. After this operation, 1034 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7 [4218 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u1 [2018 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:18 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:29 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get:49 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u1 [292 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u1 [759 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1 [690 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-14 [9764 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-3 [6836 B] Get:69 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-14 [41.7 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:74 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-14 [19.3 MB] Get:81 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:82 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u2 [45.1 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.55-1 [1870 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u2 [1899 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-14 [10.7 MB] Get:91 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:92 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:95 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 libparasail8 amd64 2.6+dfsg-1 [1878 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libparasail-dev amd64 2.6+dfsg-1 [1495 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get:125 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get:126 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6 [316 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get:139 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get:142 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:145 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:146 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1+b1 [79.2 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1+b1 [38.6 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-3 [98.3 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+b1 [74.4 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1 [564 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4+b1 [1593 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:160 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get:166 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get:173 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get:176 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:178 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get:182 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get:183 http://deb.debian.org/debian bookworm/main amd64 python3-wheel all 0.38.4-2 [30.8 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 python3-parasail all 1.3.3-1 [38.6 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 python3-tqdm all 4.64.1-1 [97.7 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 python3-pychopper all 2.7.2-1 [136 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 209 MB in 1s (195 MB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6100 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.36_5.36.0-7_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.23-3_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-3) ... Selecting previously unselected package libperl5.36:amd64. Preparing to unpack .../3-libperl5.36_5.36.0-7_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-7) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.36.0-7_amd64.deb ... Unpacking perl (5.36.0-7) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../5-libssl3_3.0.11-1~deb12u1_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1~deb12u1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../6-libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../7-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../8-python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libssl3:amd64 (3.0.11-1~deb12u1) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8432 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.4-4_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../05-libkrb5support0_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.20.1-2+deb12u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../11-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../14-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../15-libsqlite3-0_3.40.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.1-2) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../16-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../17-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../18-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8964 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package binutils-common:amd64. Preparing to unpack .../002-binutils-common_2.40-2_amd64.deb ... Unpacking binutils-common:amd64 (2.40-2) ... Selecting previously unselected package libbinutils:amd64. Preparing to unpack .../003-libbinutils_2.40-2_amd64.deb ... Unpacking libbinutils:amd64 (2.40-2) ... Selecting previously unselected package libctf-nobfd0:amd64. Preparing to unpack .../004-libctf-nobfd0_2.40-2_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.40-2) ... Selecting previously unselected package libctf0:amd64. Preparing to unpack .../005-libctf0_2.40-2_amd64.deb ... Unpacking libctf0:amd64 (2.40-2) ... Selecting previously unselected package libgprofng0:amd64. Preparing to unpack .../006-libgprofng0_2.40-2_amd64.deb ... Unpacking libgprofng0:amd64 (2.40-2) ... Selecting previously unselected package libjansson4:amd64. 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Unpacking python3-cycler (0.11.0-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../131-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../132-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../133-python3-decorator_5.1.1-3_all.deb ... Unpacking python3-decorator (5.1.1-3) ... Selecting previously unselected package python3-ply. Preparing to unpack .../134-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../135-python3-pythran_0.11.0+ds-7_amd64.deb ... Unpacking python3-pythran (0.11.0+ds-7) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../136-python3-scipy_1.10.1-2_amd64.deb ... Unpacking python3-scipy (1.10.1-2) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../137-python3-ufolib2_0.14.0+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.14.0+dfsg1-1) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../138-python3-mpmath_1.2.1-2_all.deb ... Unpacking python3-mpmath (1.2.1-2) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../139-python3-sympy_1.11.1-1_all.deb ... Unpacking python3-sympy (1.11.1-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../140-python3-tz_2022.7.1-4_all.deb ... Unpacking python3-tz (2022.7.1-4) ... Selecting previously unselected package python3-fs. Preparing to unpack .../141-python3-fs_2.4.16-2_all.deb ... Unpacking python3-fs (2.4.16-2) ... Selecting previously unselected package python3-lxml:amd64. Preparing to unpack .../142-python3-lxml_4.9.2-1+b1_amd64.deb ... Unpacking python3-lxml:amd64 (4.9.2-1+b1) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../143-python3-lz4_4.0.2+dfsg-1+b2_amd64.deb ... Unpacking python3-lz4 (4.0.2+dfsg-1+b2) ... Selecting previously unselected package unicode-data. Preparing to unpack .../144-unicode-data_15.0.0-1_all.deb ... Unpacking unicode-data (15.0.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../145-python3-fonttools_4.38.0-1+b1_amd64.deb ... Unpacking python3-fonttools (4.38.0-1+b1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../146-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../147-python3-kiwisolver_1.4.4-1+b1_amd64.deb ... Unpacking python3-kiwisolver (1.4.4-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../148-python3-pyparsing_3.0.9-1_all.deb ... Unpacking python3-pyparsing (3.0.9-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../149-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../150-python3-matplotlib_3.6.3-1+b1_amd64.deb ... Unpacking python3-matplotlib (3.6.3-1+b1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../151-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../152-python3-pandas-lib_1.5.3+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../153-python3-pandas_1.5.3+dfsg-2_all.deb ... Unpacking python3-pandas (1.5.3+dfsg-2) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../154-python3-wheel_0.38.4-2_all.deb ... Unpacking python3-wheel (0.38.4-2) ... Selecting previously unselected package python3-parasail. Preparing to unpack .../155-python3-parasail_1.3.3-1_all.deb ... Unpacking python3-parasail (1.3.3-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../156-python3-pluggy_1.0.0+repack-1_all.deb ... Unpacking python3-pluggy (1.0.0+repack-1) ... Selecting previously unselected package python3-py. Preparing to unpack .../157-python3-py_1.11.0-1_all.deb ... Unpacking python3-py (1.11.0-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../158-python3-pytest_7.2.1-2_all.deb ... Unpacking python3-pytest (7.2.1-2) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../159-python3-tqdm_4.64.1-1_all.deb ... Unpacking python3-tqdm (4.64.1-1) ... Selecting previously unselected package python3-pychopper. Preparing to unpack .../160-python3-pychopper_2.7.2-1_all.deb ... Unpacking python3-pychopper (2.7.2-1) ... Setting up media-types (10.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.14-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up libparasail8:amd64 (2.6+dfsg-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2) ... No schema files found: doing nothing. Setting up libtirpc-common (1.3.3+ds-1) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up binutils-common:amd64 (2.40-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.14-1) ... Setting up linux-libc-dev:amd64 (6.1.55-1) ... Setting up libctf-nobfd0:amd64 (2.40-2) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up libparasail-dev:amd64 (2.6+dfsg-1) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up perl-modules-5.36 (5.36.0-7) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2+deb12u1) ... Setting up libmpfr6:amd64 (4.2.0-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up libubsan1:amd64 (12.2.0-14) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up libtiff6:amd64 (4.5.0-6) ... Setting up libasan8:amd64 (12.2.0-14) ... Setting up libopenjp2-7:amd64 (2.5.0-2) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libtsan2:amd64 (12.2.0-14) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.40-2) ... Setting up libisl23:amd64 (0.25-1) ... Setting up libc-dev-bin (2.36-9+deb12u2) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up libcc1-0:amd64 (12.2.0-14) ... Setting up liblsan0:amd64 (12.2.0-14) ... Setting up libitm1:amd64 (12.2.0-14) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libctf0:amd64 (2.40-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-14) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libgprofng0:amd64 (2.40-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-3) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u1) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up libperl5.36:amd64 (5.36.0-7) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up binutils (2.40-2) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up perl (5.36.0-7) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-14) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up mailcap (3.70+nmu1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up mime-support (3.66) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up gcc (4:12.2.0-3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-9+deb12u2) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (9.4.0-1.1+b1) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up g++-12 (12.2.0-14) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up python3-renderpm:amd64 (3.6.12-1+b1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-ply (3.11-5) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-tk:amd64 (3.11.2-3) ... Setting up python3-wheel (0.38.4-2) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+b1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up g++ (4:12.2.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-contourpy (1.0.7-1+b1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-parasail (1.3.3-1) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Processing triggers for libc-bin (2.36-9+deb12u2) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Setting up python3-pychopper (2.7.2-1) ... 1m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', '-y', 'install', 'python3-pychopper'] 1m22.7s INFO: Running scripts post_install 1m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_install_exceptions'] 1m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_install_exceptions'] 1m22.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 1m24.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 1m24.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpul3ovlq_ to sid 1m24.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 1m24.5s INFO: Running scripts pre_distupgrade 1m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_distupgrade_exceptions'] 1m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_distupgrade_exceptions'] 1m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', 'update'] 1m27.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9597 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7069 kB] Fetched 16.9 MB in 2s (7236 kB/s) Reading package lists... 1m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', 'update'] 1m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', '-yf', 'dist-upgrade'] 2m49.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: python3-more-itertools python3-py Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: python3-renderpm python3-reportlab-accel The following NEW packages will be installed: cpp-13 fonts-dejavu-extra fonts-dejavu-mono g++-13 gcc-13 gcc-13-base libcairo2 libcurl3-gnutls libgcc-13-dev libhts3 libhtscodecs2 libhwasan0 libldap-2.5-0 libnghttp2-14 libpixman-1-0 libpsl5 libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsframe1 libsharpyuv0 libssh2-1 libstdc++-13-dev libunistring5 libxcb-render0 libxcb-shm0 netbase python3-cairo python3-freetype python3-pysam python3-rlpycairo python3.12 python3.12-dev python3.12-minimal The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils coreutils cpp cpp-12 dash debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils fontconfig-config fonts-dejavu-core g++ g++-12 gcc gcc-12 gcc-12-base grep init-system-helpers libapt-pkg6.0 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libboost1.74-dev libbrotli1 libbsd0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdeflate0 libexpat1 libexpat1-dev libext2fs2 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-12-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgprofng0 libgssapi-krb5-2 libharfbuzz0b libhogweed6 libicu72 libidn2-0 libimagequant0 libisl23 libitm1 libjs-sphinxdoc libk5crypto3 libkrb5-3 libkrb5support0 liblerc4 liblsan0 liblzma5 libmd0 libmount1 libmpfr6 libncursesw6 libnettle8 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libparasail-dev libparasail8 libpcre2-8-0 libperl5.36 libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd0 libtasn1-6 libtiff6 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxml2 libxsimd-dev libxxhash0 libzstd1 linux-libc-dev login logsave mawk media-types mount ncurses-base ncurses-bin passwd perl perl-base perl-modules-5.36 python3 python3-all python3-all-dev python3-appdirs python3-attr python3-biopython python3-brotli python3-contourpy python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-ply python3-pychopper python3-pyparsing python3-pytest python3-pythran python3-reportlab python3-scipy python3-sympy python3-tk python3-tz python3-ufolib2 python3-wheel python3.11 python3.11-dev python3.11-minimal readline-common sysvinit-utils tzdata unicode-data usr-is-merged util-linux util-linux-extra zlib1g zlib1g-dev 213 upgraded, 38 newly installed, 2 to remove and 0 not upgraded. Need to get 294 MB of archives. After this operation, 356 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13 [70.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.14 [88.3 kB] Get:3 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:4 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-2 [96.7 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-3 [66.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.36-2 [118 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.37-13 [1902 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.37-13 [46.6 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libtirpc-dev amd64 1.3.4+ds-1 [188 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5 [135 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5 [332 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5 [79.6 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5 [32.9 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.0-2+b1 [20.1 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.1.4-2 [2058 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-2 [89.7 kB] Get:20 http://deb.debian.org/debian sid/main amd64 linux-libc-dev amd64 6.5.13-1 [2037 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-13 [2753 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-13 [602 kB] Get:23 http://deb.debian.org/debian sid/main amd64 gcc-13-base amd64 13.2.0-8 [41.1 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 13.2.0-8 [57.7 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2 [557 kB] Get:26 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-2+b1 [2948 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 13.2.0-8 [695 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:31 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.4.5-0.1 [239 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255~rc4-2 [360 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255~rc4-2 [122 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2 [26.4 kB] Get:35 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3 [918 kB] Get:36 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3 [87.5 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.7.7 [946 kB] Get:38 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.1 [1561 kB] Get:39 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:40 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:41 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:42 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-3 [431 kB] Get:43 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-3 [616 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20231121-1 [135 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20231121-1 [341 kB] Get:46 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20231121-1 [429 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libperl5.36 amd64 5.36.0-10 [4221 kB] Get:48 http://deb.debian.org/debian sid/main amd64 perl amd64 5.36.0-10 [239 kB] Get:49 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.36.0-10 [1602 kB] Get:50 http://deb.debian.org/debian sid/main amd64 perl-modules-5.36 all 5.36.0-10 [2815 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4 [697 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libgdbm6 amd64 1.23-5 [72.5 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4 amd64 1.23-5 [48.3 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-2 [159 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4 [261 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-1+b1 [74.5 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-2 [190 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.1-1 [10.8 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.3-3 [16.9 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.1-1+b1 [47.7 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-2 [116 kB] Get:62 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.39.3-2 [155 kB] Get:63 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-2 [1229 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.9.1-2 [295 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.4-2 [23.5 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-2 [419 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.1-2 [421 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.9.1-2 [327 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.4-1+b1 [125 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3 [48.3 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.8.2-1 [1424 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271 [9940 B] Get:73 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-9.1 [65.5 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:76 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b1 [90.3 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-9.1 [49.9 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-9.1 [264 kB] Get:80 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-3 [972 kB] Get:81 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:82 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.4-2+b1 [47.1 kB] Get:84 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.7 [1362 kB] Get:85 http://deb.debian.org/debian sid/main amd64 usr-is-merged all 38 [5504 B] Get:86 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:87 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20231121-1 [267 kB] Get:88 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-3 [31.8 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.81+dfsg-2 [1597 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3-reportlab all 4.0.7-1 [673 kB] Get:91 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:92 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3.11-dev amd64 3.11.7-1 [508 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.7-1 [590 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libexpat1-dev amd64 2.5.0-2 [149 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.5.0-2 [99.0 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libpython3.11-dev amd64 3.11.7-1 [4577 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libpython3.11 amd64 3.11.7-1 [1993 kB] Get:99 http://deb.debian.org/debian sid/main amd64 tzdata all 2023c-11 [252 kB] Get:100 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.44.2-1 [882 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.39.3-2 [29.6 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.7-1 [1820 kB] Get:105 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.7-1 [2037 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.7-1 [816 kB] Get:107 http://deb.debian.org/debian sid/main amd64 python3-all-dev amd64 3.11.6-1 [1076 B] Get:108 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.11.6-1 [1060 B] Get:109 http://deb.debian.org/debian sid/main amd64 python3-pandas all 1.5.3+dfsg-7 [2886 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libpython3-all-dev amd64 3.11.6-1 [1072 B] Get:111 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.11.6-1 [9460 B] Get:112 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.11.6-1 [26.1 kB] Get:113 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:114 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:115 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.11.5-1 [131 kB] Get:116 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 7.2.6-2 [149 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.0-7 [806 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.0-7 [1922 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libpython3.12 amd64 3.12.0-7 [2127 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libpython3.12-dev amd64 3.12.0-7 [4939 kB] Get:122 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.0-7 [2184 kB] Get:123 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.0-7 [638 kB] Get:124 http://deb.debian.org/debian sid/main amd64 python3.12-dev amd64 3.12.0-7 [506 kB] Get:125 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.8.2-3 [78.4 kB] Get:126 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libopenblas-pthread-dev amd64 0.3.25+ds-1 [4679 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 13.2.0-8 [803 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libopenblas0-pthread amd64 0.3.25+ds-1 [6640 kB] Get:130 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.2-2 [6299 kB] Get:131 http://deb.debian.org/debian sid/main amd64 python3-tz all 2023.3.post1-1 [30.8 kB] Get:132 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-7 [3520 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:134 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.11.5-1 [108 kB] Get:135 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.1.0-1+b1 [77.1 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b1 [302 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.40-2 [276 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1 [437 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 13.2.0-8 [131 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1 [35.0 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3 [71.1 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.78.1-4 [1451 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.0.1-1 [2158 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1 [13.7 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.18-1 [40.9 kB] Get:146 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4 [170 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.3 [107 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.3.2-0.3 [308 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-3 [323 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.3.2-0.3 [107 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.3.2-0.3 [120 kB] Get:152 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.1.0-1+b1 [520 kB] Get:153 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:154 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:155 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.14.2-6 [316 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.14.2-6 [387 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-1 [530 kB] Get:163 http://deb.debian.org/debian sid/main amd64 python3-cairo amd64 1.25.1-1 [112 kB] Get:164 http://deb.debian.org/debian sid/main amd64 python3-freetype all 2.4.0-1 [80.3 kB] Get:165 http://deb.debian.org/debian sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:166 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-extra all 2.37-8 [1792 kB] Get:167 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2+b1 [19.9 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libext2fs2 amd64 1.47.0-2+b1 [205 kB] Get:169 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2+b1 [572 kB] Get:170 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-2 [143 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-9.1 [134 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-1 [35.5 kB] Get:173 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20231126-1 [136 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.41.50.20231202-1 [769 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.41.50.20231202-1 [87.1 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.41.50.20231202-1 [151 kB] Get:177 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.41.50.20231202-1 [2234 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.41.50.20231202-1 [515 kB] Get:179 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.41.50.20231202-1 [80.1 kB] Get:180 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.41.50.20231202-1 [2537 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libsframe1 amd64 2.41.50.20231202-1 [75.1 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.26-3 [700 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.1-1 [713 kB] Get:184 http://deb.debian.org/debian sid/main amd64 cpp-13 amd64 13.2.0-8 [9915 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 13.2.0-8 [43.0 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 13.2.0-8 [26.1 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 13.2.0-8 [9304 B] Get:188 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 13.2.0-8 [2558 kB] Get:189 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 13.2.0-8 [1102 kB] Get:190 http://deb.debian.org/debian sid/main amd64 g++-12 amd64 12.3.0-12 [10.8 MB] Get:191 http://deb.debian.org/debian sid/main amd64 gcc-12 amd64 12.3.0-12 [19.5 MB] Get:192 http://deb.debian.org/debian sid/main amd64 cpp-12 amd64 12.3.0-12 [9861 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 13.2.0-8 [1010 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libstdc++-12-dev amd64 12.3.0-12 [2068 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 13.2.0-8 [145 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libgcc-12-dev amd64 12.3.0-12 [2435 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 13.2.0-8 [2334 kB] Get:198 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.3.0-12 [41.0 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 13.2.0-8 [1154 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libgcc-13-dev amd64 13.2.0-8 [2538 kB] Get:201 http://deb.debian.org/debian sid/main amd64 gcc-13 amd64 13.2.0-8 [19.6 MB] Get:202 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kB] Get:235 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.10.1-6 [19.7 MB] Get:236 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get:237 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.12-6 [3868 kB] Get:238 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 4.9.3-1+b1 [2016 kB] Get:239 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get:240 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:241 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get:242 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.4-1+b2 [80.3 kB] Get:243 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.1-1 [145 kB] Get:244 http://deb.debian.org/debian sid/main amd64 python3-packaging all 23.2-1 [44.8 kB] Get:245 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.6.3-1+b2 [8166 kB] Get:246 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.1.0-1 [59.1 kB] Get:247 http://deb.debian.org/debian sid/main amd64 python3-pluggy all 1.3.0-1 [25.1 kB] Get:248 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.22.0+ds-1 [3145 kB] Get:249 http://deb.debian.org/debian sid/main amd64 python3-pytest all 7.4.3-1 [239 kB] Get:250 http://deb.debian.org/debian sid/main amd64 python3-pychopper all 2.7.9-1 [137 kB] Get:251 http://deb.debian.org/debian sid/main amd64 python3-wheel all 0.42.0-1 [52.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 294 MB in 1s (242 MB/s) (Reading database ... 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Selecting previously unselected package gcc-13-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41684 files and directories currently installed.) Preparing to unpack .../gcc-13-base_13.2.0-8_amd64.deb ... Unpacking gcc-13-base:amd64 (13.2.0-8) ... Setting up gcc-13-base:amd64 (13.2.0-8) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41686 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.39.3-2_amd64.deb ... Unpacking util-linux-extra (2.39.3-2) over (2.38.1-5+b1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Setting up util-linux-extra (2.39.3-2) ... (Reading database ... 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Processing triggers for libc-bin (2.37-13) ... 2m49.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', '-yf', 'dist-upgrade'] 2m49.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m51.1s DUMP: a2cdc8e086844ad846710686ff1d7401 - 2m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'show', '--no-all-versions', 'python3-pychopper'] 2m51.4s DUMP: Package: python3-pychopper Source: pychopper Version: 2.7.9-1 Installed-Size: 406 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-parasail, python3-pysam, python3-pytest, python3-six, python3-tqdm, python3:any Description-en: identify, orient and trim full-length Nanopore cDNA reads Pychopper v2 is a Python module to identify, orient and trim full-length Nanopore cDNA reads. It is also able to rescue fused reads and provides the script 'pychopper.py'. The general approach of Pychopper v2 is the following: . * Pychopper first identifies alignment hits of the primers across the length of the sequence. The default method for doing this is using nhmmscan with the pre-trained strand specific profile HMMs, included with the package. Alternatively, one can use the edlib backend, which uses a combination of global and local alignment to identify the primers within the read. * After identifying the primer hits by either of the backends, the reads are divided into segments defined by two consecutive primer hits. The score of a segment is its length if the configuration of the flanking primer hits is valid (such as SPP,-VNP for forward reads) or zero otherwise. * The segments are assigned to rescued reads using a dynamic programming algorithm maximizing the sum of used segment scores (hence the amount of rescued bases). A crucial observation about the algorithm is that if a segment is included as a rescued read, then the next segment must be excluded as one of the primer hits defining it was "used up" by the previous segment. This put constraints on the dynamic programming graph. The arrows in read define the optimal path for rescuing two fused reads with the a total score of l1 + l3. . A crucial parameter of Pychopper v2 is -q, which determines the stringency of primer alignment (E-value in the case of the pHMM backend). This can be explicitly specified by the user, however by default it is optimized on a random sample of input reads to produce the maximum number of classified reads. Description-md5: c2116885230163a610c0268475202885 Homepage: https://github.com/epi2me-labs/pychopper Section: python Priority: optional Filename: pool/main/p/pychopper/python3-pychopper_2.7.9-1_all.deb Size: 136580 MD5sum: 7c41500ca44a8fee3807e90c5386f485 SHA256: a919f8a0391b40541f638df3a58fa43b4ff60cabb42745b6c0010655578d7257 2m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'show', '--no-all-versions', 'python3-pychopper'] 2m51.4s INFO: apt-cache knows about the following packages: python3-pychopper 2m51.4s INFO: Running scripts pre_install 2m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_database-server'] 2m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_database-server'] 2m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_exceptions'] 2m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_exceptions'] 2m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_extras'] 2m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_extras'] 2m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture'] 2m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture'] 2m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy'] 2m51.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy'] 2m51.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy', 'python3-pychopper'] 2m51.7s DUMP: python3-pychopper: Installed: 2.7.9-1 Candidate: 2.7.9-1 Version table: *** 2.7.9-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy', 'python3-pychopper'] 2m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', '-y', 'install', 'python3-pychopper'] 2m52.1s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-pychopper is already the newest version (2.7.9-1). The following packages were automatically installed and are no longer required: python3-more-itertools python3-py Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', '-y', 'install', 'python3-pychopper'] 2m52.1s INFO: Running scripts post_install 2m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_install_exceptions'] 2m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_install_exceptions'] 2m52.1s INFO: Running scripts post_distupgrade 2m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_distupgrade_exceptions'] 2m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_distupgrade_exceptions'] 2m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_distupgrade_zz_backports'] 2m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_distupgrade_zz_backports'] 2m52.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 2m54.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 2m54.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 2m57.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 2m57.2s INFO: Running scripts pre_install 2m57.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_database-server'] 2m57.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_database-server'] 2m57.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_exceptions'] 2m57.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_exceptions'] 2m57.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_extras'] 2m57.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_extras'] 2m57.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture'] 2m57.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture'] 2m57.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m57.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m57.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy'] 2m57.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m57.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy'] 2m57.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy', 'python3-pychopper'] 2m57.4s DUMP: python3-pychopper: Installed: 2.7.9-1 Candidate: 2.7.9-1 Version table: *** 2.7.9-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-cache', 'policy', 'python3-pychopper'] 2m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', '-y', 'install', 'python3-pychopper=2.7.9-1'] 2m57.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-pychopper is already the newest version (2.7.9-1). The following packages were automatically installed and are no longer required: python3-more-itertools python3-py Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m57.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', '-y', 'install', 'python3-pychopper=2.7.9-1'] 2m57.8s INFO: Running scripts post_install 2m57.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_install_exceptions'] 2m57.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_install_exceptions'] 2m57.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 3m0.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 3m0.1s INFO: /bin converted to /usr/bin by /usr merge 3m0.1s INFO: /lib converted to /usr/lib by /usr merge 3m0.1s INFO: /lib/init converted to /usr/lib/init by /usr merge 3m0.1s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 3m0.1s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 3m0.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 3m0.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 3m0.1s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 3m0.1s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 3m0.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 3m0.1s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 3m0.1s INFO: /lib64 converted to /usr/lib64 by /usr merge 3m0.1s INFO: /sbin converted to /usr/sbin by /usr merge 3m2.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', '-ac', '--ignore-obsolete'] 3m7.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', '-ac', '--ignore-obsolete'] 3m7.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m7.5s DUMP: 0.15.6 3m7.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m7.5s INFO: Running adequate version 0.15.6 now. 3m7.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'python3-pychopper'] 3m7.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'python3-pychopper'] 3m7.6s INFO: Running scripts pre_remove 3m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_exceptions'] 3m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/pre_remove_exceptions'] 3m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m14.9s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.7 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed binutils binutils 2.41.50.20231202-1 install ok installed binutils-common:amd64 binutils-common 2.41.50.20231202-1 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.41.50.20231202-1 install ok installed blt blt 2.5.3+dfsg-4.1 install ok installed bsdutils bsdutils 1:2.39.3-2 install ok installed coreutils coreutils 9.4-2+b1 install ok installed cpp cpp 4:13.2.0-2 install ok installed cpp-12 cpp-12 12.3.0-12 install ok installed cpp-13 cpp-13 13.2.0-8 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.14 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.1 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig-config fontconfig-config 2.14.2-6 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-lyx fonts-lyx 2.3.7-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-7 install ok installed g++ g++ 4:13.2.0-2 install ok installed g++-12 g++-12 12.3.0-12 install ok installed g++-13 g++-13 13.2.0-8 install ok installed gcc gcc 4:13.2.0-2 install ok installed gcc-12 gcc-12 12.3.0-12 install ok installed gcc-12-base:amd64 gcc-12-base 12.3.0-12 install ok installed gcc-13 gcc-13 13.2.0-8 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-8 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.11-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.7 install ok installed libasan8:amd64 libasan8 13.2.0-8 install ok installed libatomic1:amd64 libatomic1 13.2.0-8 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:3.1.1-1+b1 install ok installed libbinutils:amd64 libbinutils 2.41.50.20231202-1 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-2 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0+ds1-23+b1 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b1 install ok installed libbsd0:amd64 libbsd0 0.11.7-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.37-13 install ok installed libc-dev-bin libc-dev-bin 2.37-13 install ok installed libc6:amd64 libc6 2.37-13 install ok installed libc6-dev:amd64 libc6-dev 2.37-13 install ok installed libcairo2:amd64 libcairo2 1.18.0-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcc1-0:amd64 libcc1-0 13.2.0-8 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-2 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.41.50.20231202-1 install ok installed libctf0:amd64 libctf0 2.41.50.20231202-1 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 8.4.0-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libdeflate0:amd64 libdeflate0 1.18-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-2 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-2 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.2-6 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.3.0-12 install ok installed libgcc-13-dev:amd64 libgcc-13-dev 13.2.0-8 install ok installed libgcc-s1:amd64 libgcc-s1 13.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-5 install ok installed libgdbm6:amd64 libgdbm6 1.23-5 install ok installed libgfortran5:amd64 libgfortran5 13.2.0-8 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.78.1-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.2-1 install ok installed libgomp1:amd64 libgomp1 13.2.0-8 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgprofng0:amd64 libgprofng0 2.41.50.20231202-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.0.1-1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libhts3:amd64 libhts3 1.18+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.5.2-1 install ok installed libhwasan0:amd64 libhwasan0 13.2.0-8 install ok installed libicu72:amd64 libicu72 72.1-4 install ok installed libidn2-0:amd64 libidn2-0 2.3.4-1+b1 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1 install ok installed libisl23:amd64 libisl23 0.26-3 install ok installed libitm1:amd64 libitm1 13.2.0-8 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.2.6-2 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4 install ok installed liblsan0:amd64 liblsan0 13.2.0-8 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmount1:amd64 libmount1 2.39.3-2 install ok installed libmpc3:amd64 libmpc3 1.3.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.2.1-1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20231121-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.58.0-1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-3 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.25+ds-1 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.25+ds-1 install ok installed libopenblas0:amd64 libopenblas0 0.3.25+ds-1 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.25+ds-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1 install ok installed libparasail-dev:amd64 libparasail-dev 2.6.2+dfsg-1 install ok installed libparasail8:amd64 libparasail8 2.6.2+dfsg-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-10 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.40-2 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.11.6-1 install ok installed libpython3-dev:amd64 libpython3-dev 3.11.6-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11:amd64 libpython3.11 3.11.7-1 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.7-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.7-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.7-1 install ok installed libpython3.12:amd64 libpython3.12 3.12.0-7 install ok installed libpython3.12-dev:amd64 libpython3.12-dev 3.12.0-7 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.0-7 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.0-7 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6 install ok installed libquadmath0:amd64 libquadmath0 13.2.0-8 install ok installed libraqm0:amd64 libraqm0 0.10.1-1 install ok installed libreadline8:amd64 libreadline8 8.2-3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-2+b1 install ok installed libselinux1:amd64 libselinux1 3.5-1+b1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b1 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsframe1:amd64 libsframe1 2.41.50.20231202-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.3 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.44.2-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-3 install ok installed libssl3:amd64 libssl3 3.1.4-2 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.3.0-12 install ok installed libstdc++-13-dev:amd64 libstdc++-13-dev 13.2.0-8 install ok installed libstdc++6:amd64 libstdc++6 13.2.0-8 install ok installed libsystemd0:amd64 libsystemd0 255~rc4-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.13+dfsg-2 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-3 install ok installed libtinfo6:amd64 libtinfo6 6.4+20231121-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.4+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.13-2 install ok installed libtsan2:amd64 libtsan2 13.2.0-8 install ok installed libubsan1:amd64 libubsan1 13.2.0-8 install ok installed libudev1:amd64 libudev1 255~rc4-2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-2 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.3 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.3.2-0.3 install ok installed libwebpmux3:amd64 libwebpmux3 1.3.2-0.3 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxsimd-dev:amd64 libxsimd-dev 10.0.0-3 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.5.13-1 install ok installed login login 1:4.13+dfsg1-3 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mailcap mailcap 3.70+nmu1 install ok installed mawk mawk 1.3.4.20231126-1 install ok installed media-types media-types 10.1.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.39.3-2 install ok installed ncurses-base ncurses-base 6.4+20231121-1 install ok installed ncurses-bin ncurses-bin 6.4+20231121-1 install ok installed netbase netbase 6.4 install ok installed passwd passwd 1:4.13+dfsg1-3 install ok installed perl perl 5.36.0-10 install ok installed perl-base perl-base 5.36.0-10 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-10 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-1 install ok installed python3 python3 3.11.6-1 install ok installed python3-all python3-all 3.11.6-1 install ok installed python3-all-dev python3-all-dev 3.11.6-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-attr python3-attr 23.1.0-2 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-biopython python3-biopython 1.81+dfsg-2 install ok installed python3-brotli python3-brotli 1.1.0-2+b1 install ok installed python3-cairo:amd64 python3-cairo 1.25.1-1 install ok installed python3-contourpy python3-contourpy 1.0.7-1+b2 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-dev python3-dev 3.11.6-1 install ok installed python3-distutils python3-distutils 3.11.5-1 install ok installed python3-fonttools python3-fonttools 4.46.0-1 install ok installed python3-freetype python3-freetype 2.4.0-1 install ok installed python3-fs python3-fs 2.4.16-2 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-iniconfig python3-iniconfig 1.1.1-2 install ok installed python3-kiwisolver python3-kiwisolver 1.4.4-1+b2 install ok installed python3-lib2to3 python3-lib2to3 3.11.5-1 install ok installed python3-lxml:amd64 python3-lxml 4.9.3-1+b1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.6.3-1+b2 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3-more-itertools python3-more-itertools 10.1.0-1 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-numpy python3-numpy 1:1.24.2-2 install ok installed python3-packaging python3-packaging 23.2-1 install ok installed python3-pandas python3-pandas 1.5.3+dfsg-7 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.5.3+dfsg-7 install ok installed python3-parasail python3-parasail 1.3.3-1 install ok installed python3-pil:amd64 python3-pil 10.1.0-1+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.1.0-1+b1 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-pluggy python3-pluggy 1.3.0-1 install ok installed python3-ply python3-ply 3.11-6 install ok installed python3-py python3-py 1.11.0-1 install ok installed python3-pychopper python3-pychopper 2.7.9-1 install ok installed python3-pyparsing python3-pyparsing 3.1.1-1 install ok installed python3-pysam python3-pysam 0.22.0+ds-1 install ok installed python3-pytest python3-pytest 7.4.3-1 install ok installed python3-pythran python3-pythran 0.14.0+ds-2 install ok installed python3-reportlab python3-reportlab 4.0.7-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-scipy python3-scipy 1.10.1-6 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-sympy python3-sympy 1.12-6 install ok installed python3-tk:amd64 python3-tk 3.11.5-1 install ok installed python3-tqdm python3-tqdm 4.64.1-1 install ok installed python3-tz python3-tz 2023.3.post1-1 install ok installed python3-ufolib2 python3-ufolib2 0.16.0+dfsg1-1 install ok installed python3-wheel python3-wheel 0.42.0-1 install ok installed python3.11 python3.11 3.11.7-1 install ok installed python3.11-dev python3.11-dev 3.11.7-1 install ok installed python3.11-minimal python3.11-minimal 3.11.7-1 install ok installed python3.12 python3.12 3.12.0-7 install ok installed python3.12-dev python3.12-dev 3.12.0-7 install ok installed python3.12-minimal python3.12-minimal 3.12.0-7 install ok installed readline-common readline-common 8.2-3 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-1 install ok installed sgml-base sgml-base 1.31 install ok installed sysvinit-utils sysvinit-utils 3.08-3 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4.1 install ok installed tzdata tzdata 2023c-11 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed usr-is-merged usr-is-merged 38 install ok installed util-linux util-linux 2.39.3-2 install ok installed util-linux-extra util-linux-extra 2.39.3-2 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg-3 3m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'cpp', 'cpp-12', 'cpp-13', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'g++-13', 'gcc', 'gcc-12', 'gcc-13', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libparasail-dev:amd64', 'libparasail8:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'perl', 'perl-modules-5.36', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo:amd64', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-iniconfig', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parasail', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-wheel', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64', 'python3-pychopper'] 3m55.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu blt cpp cpp-12 cpp-13 fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-lyx fonts-urw-base35 g++ g++-12 g++-13 gcc gcc-12 gcc-13 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgcc-13-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhts3 libhtscodecs2 libhwasan0 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libparasail-dev libparasail8 libperl5.36 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsframe1 libsharpyuv0 libsqlite3-0 libssh2-1 libstdc++-12-dev libstdc++-13-dev libtcl8.6 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 linux-libc-dev mailcap media-types mime-support netbase perl perl-modules-5.36 python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-biopython python3-brotli python3-cairo python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-freetype python3-fs python3-gast python3-iniconfig python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parasail python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-ply python3-py python3-pychopper python3-pyparsing python3-pysam python3-pytest python3-pythran python3-reportlab python3-rlpycairo python3-scipy python3-six python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-wheel python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal readline-common rpcsvc-proto sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 0 newly installed, 222 to remove and 0 not upgraded. After this operation, 1380 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43981 files and directories currently installed.) Removing python3-pychopper (2.7.9-1) ... Removing python3-matplotlib (3.6.3-1+b2) ... Removing g++ (4:13.2.0-2) ... Removing gcc (4:13.2.0-2) ... Removing g++-12 (12.3.0-12) ... Removing gcc-12 (12.3.0-12) ... Removing python3-biopython (1.81+dfsg-2) ... Removing python3-reportlab (4.0.7-1) ... Removing python3-pil.imagetk:amd64 (10.1.0-1+b1) ... Removing python3-pil:amd64 (10.1.0-1+b1) ... Removing python3-tk:amd64 (3.11.5-1) ... Removing blt (2.5.3+dfsg-4.1) ... Removing cpp (4:13.2.0-2) ... Removing cpp-12 (12.3.0-12) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Removing libtk8.6:amd64 (8.6.13-2) ... Removing libxft2:amd64 (2.3.6-1) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo:amd64 (1.25.1-1) ... Removing libcairo2:amd64 (1.18.0-1) ... Removing libfontconfig1:amd64 (2.14.2-6) ... Removing fontconfig-config (2.14.2-6) ... Removing python-matplotlib-data (3.6.3-1) ... Removing fonts-dejavu-extra (2.37-8) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-lyx (2.3.7-1) ... Removing fonts-urw-base35 (20200910-7) ... Removing libstdc++-12-dev:amd64 (12.3.0-12) ... Removing libgcc-12-dev:amd64 (12.3.0-12) ... Removing python3-parasail (1.3.3-1) ... Removing python3-pandas (1.5.3+dfsg-7) ... Removing python3-pandas-lib:amd64 (1.5.3+dfsg-7) ... Removing python3-contourpy (1.0.7-1+b2) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing xfonts-utils (1:7.7+6) ... Removing libraqm0:amd64 (0.10.1-1) ... Removing python3-pysam (0.22.0+ds-1) ... Removing libhts3:amd64 (1.18+ds-1) ... Removing libcurl3-gnutls:amd64 (8.4.0-2) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libtiff6:amd64 (4.5.1+git230720-3) ... Removing libdeflate0:amd64 (1.18-1) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing libfribidi0:amd64 (1.0.13-3) ... Removing python3-tqdm (4.64.1-1) ... Removing python3-wheel (0.42.0-1) ... Removing python3-pytest (7.4.3-1) ... Removing mime-support (3.66) ... Removing mailcap (3.70+nmu1) ... Removing perl (5.36.0-10) ... Removing libperl5.36:amd64 (5.36.0-10) ... Removing libgdbm-compat4:amd64 (1.23-5) ... Removing libgdbm6:amd64 (1.23-5) ... Removing libopenblas-dev:amd64 (0.3.25+ds-1) ... Removing libopenblas0:amd64 (0.3.25+ds-1) ... Removing libharfbuzz0b:amd64 (8.0.1-1) ... Removing libglib2.0-0:amd64 (2.78.1-4) ... Removing libimagequant0:amd64 (2.18.0-1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libhtscodecs2:amd64 (1.5.2-1) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing liblerc4:amd64 (4.0.0+ds-4) ... Removing libnghttp2-14:amd64 (1.58.0-1) ... Removing libopenjp2-7:amd64 (2.5.0-2) ... Removing libparasail-dev:amd64 (2.6.2+dfsg-1) ... Removing libparasail8:amd64 (2.6.2+dfsg-1) ... Removing libpixman-1-0:amd64 (0.42.2-1) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing libqhull-r8.0:amd64 (2020.2-6) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4) ... Removing libwebpmux3:amd64 (1.3.2-0.3) ... Removing libwebpdemux2:amd64 (1.3.2-0.3) ... Removing libwebp7:amd64 (1.3.2-0.3) ... Removing libsharpyuv0:amd64 (1.3.2-0.3) ... Removing libssh2-1:amd64 (1.11.0-3) ... Removing libtcl8.6:amd64 (8.6.13+dfsg-2) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing perl-modules-5.36 (5.36.0-10) ... Removing python3-cycler (0.11.0-1) ... Removing python3-dateutil (2.8.2-3) ... Removing python3-freetype (2.4.0-1) ... Removing python3-iniconfig (1.1.1-2) ... Removing python3-kiwisolver (1.4.4-1+b2) ... Removing python3-more-itertools (10.1.0-1) ... Removing python3-packaging (23.2-1) ... Removing python3-py (1.11.0-1) ... Removing python3-pluggy (1.3.0-1) ... Removing python3-pyparsing (3.1.1-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libfreetype6:amd64 (2.13.2+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b1) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-4) ... Removing libpng16-16:amd64 (1.6.40-2) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing python3-ufolib2 (0.16.0+dfsg1-1) ... Removing python3-attr (23.1.0-2) ... Removing python3-fonttools (4.46.0-1) ... Removing python3-scipy (1.10.1-6) ... Removing python3-pythran (0.14.0+ds-2) ... Removing g++-13 (13.2.0-8) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0+ds1-23+b1) ... Removing libstdc++-13-dev:amd64 (13.2.0-8) ... Removing python3-numpy (1:1.24.2-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Removing python3-all-dev (3.11.6-1) ... Removing python3.12-dev (3.12.0-7) ... Removing libpython3-all-dev:amd64 (3.11.6-1) ... Removing libpython3.12-dev:amd64 (3.12.0-7) ... Removing python3-dev (3.11.6-1) ... Removing libpython3-dev:amd64 (3.11.6-1) ... Removing python3-all (3.11.6-1) ... Removing python3.12 (3.12.0-7) ... Removing python3.12-minimal (3.12.0-7) ... Removing libpython3.12:amd64 (3.12.0-7) ... Removing libpython3.12-stdlib:amd64 (3.12.0-7) ... Removing python3-distutils (3.11.5-1) ... Removing libopenblas-pthread-dev:amd64 (0.3.25+ds-1) ... Removing libopenblas0-pthread:amd64 (0.3.25+ds-1) ... Removing libgfortran5:amd64 (13.2.0-8) ... Removing python3.11-dev (3.11.7-1) ... Removing python3-lxml:amd64 (4.9.3-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b1) ... Removing libicu72:amd64 (72.1-4) ... Removing libjs-sphinxdoc (7.2.6-2) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libpython3.12-minimal:amd64 (3.12.0-7) ... Removing libxsimd-dev:amd64 (10.0.0-3) ... Removing python3-fs (2.4.16-2) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-beniget (0.4.1-3) ... Removing python3-brotli (1.1.0-2+b1) ... Removing python3-decorator (5.1.1-5) ... Removing python3-gast (0.5.2-2) ... Removing python3-lib2to3 (3.11.5-1) ... Removing python3-lz4 (4.0.2+dfsg-1+b3) ... Removing python3-sympy (1.12-6) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-ply (3.11-6) ... Removing python3-six (1.16.0-4) ... Removing python3-tz (2023.3.post1-1) ... Removing unicode-data (15.1.0-1) ... Removing gcc-13 (13.2.0-8) ... Removing binutils (2.41.50.20231202-1) ... Removing binutils-x86-64-linux-gnu (2.41.50.20231202-1) ... Removing libgprofng0:amd64 (2.41.50.20231202-1) ... Removing libctf0:amd64 (2.41.50.20231202-1) ... Removing libbinutils:amd64 (2.41.50.20231202-1) ... Removing binutils-common:amd64 (2.41.50.20231202-1) ... Removing cpp-13 (13.2.0-8) ... Removing libgcc-13-dev:amd64 (13.2.0-8) ... Removing libasan8:amd64 (13.2.0-8) ... Removing libatomic1:amd64 (13.2.0-8) ... Removing libpython3.11-dev:amd64 (3.11.7-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg-3) ... Removing libexpat1-dev:amd64 (2.5.0-2) ... Removing libc6-dev:amd64 (2.37-13) ... Removing libc-dev-bin (2.37-13) ... Removing libcc1-0:amd64 (13.2.0-8) ... Removing libcrypt-dev:amd64 (1:4.4.36-2) ... Removing libctf-nobfd0:amd64 (2.41.50.20231202-1) ... Removing python3 (3.11.6-1) ... Removing python3.11 (3.11.7-1) ... Removing libgomp1:amd64 (13.2.0-8) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing libpython3.11:amd64 (3.11.7-1) ... Removing libpython3.11-stdlib:amd64 (3.11.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libnsl-dev:amd64 (1.3.0-3) ... Removing libtirpc-dev:amd64 (1.3.4+ds-1) ... Removing libhwasan0:amd64 (13.2.0-8) ... Removing libisl23:amd64 (0.26-3) ... Removing libitm1:amd64 (13.2.0-8) ... Removing libjansson4:amd64 (2.14-2) ... Removing liblsan0:amd64 (13.2.0-8) ... Removing libmpc3:amd64 (1.3.1-1) ... Removing libmpfr6:amd64 (4.2.1-1) ... Removing libncursesw6:amd64 (6.4+20231121-1) ... Removing libnsl2:amd64 (1.3.0-3) ... Removing python3-minimal (3.11.6-1) ... Removing python3.11-minimal (3.11.7-1) ... Removing libpython3.11-minimal:amd64 (3.11.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (13.2.0-8) ... Removing libreadline8:amd64 (8.2-3) ... Removing libsframe1:amd64 (2.41.50.20231202-1) ... Removing libsqlite3-0:amd64 (3.44.2-1) ... Removing libtsan2:amd64 (13.2.0-8) ... Removing libubsan1:amd64 (13.2.0-8) ... Removing linux-libc-dev:amd64 (6.5.13-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-3) ... Removing rpcsvc-proto (1.4.3-1) ... Removing libexpat1:amd64 (2.5.0-2) ... Removing libtirpc3:amd64 (1.3.4+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-5) ... Removing libkrb5-3:amd64 (1.20.1-5) ... Removing libk5crypto3:amd64 (1.20.1-5) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-5) ... Removing libtirpc-common (1.3.4+ds-1) ... Processing triggers for libc-bin (2.37-13) ... 3m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'cpp', 'cpp-12', 'cpp-13', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'g++-13', 'gcc', 'gcc-12', 'gcc-13', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libparasail-dev:amd64', 'libparasail8:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'perl', 'perl-modules-5.36', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo:amd64', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-iniconfig', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parasail', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-wheel', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64', 'python3-pychopper'] 3m55.2s INFO: Running scripts post_remove 3m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_remove_exceptions'] 3m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_remove_exceptions'] 3m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'cpp', 'cpp-12', 'cpp-13', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'g++-13', 'gcc', 'gcc-12', 'gcc-13', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libparasail-dev:amd64', 'libparasail8:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'perl', 'perl-modules-5.36', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo:amd64', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-iniconfig', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parasail', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-wheel', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64'] 3m55.7s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 5393 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.41.50.20231202-1) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed dpkg: warning: ignoring request to remove cpp-13 which isn't installed Purging configuration files for fontconfig-config (2.14.2-6) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... dpkg: warning: ignoring request to remove fonts-dejavu-extra which isn't installed Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-7) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove g++-13 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove gcc-13 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-2) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-13-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.78.1-4) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-5) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libparasail-dev which isn't installed dpkg: warning: ignoring request to remove libparasail8 which isn't installed dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.7-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.12 which isn't installed dpkg: warning: ignoring request to remove libpython3.12-dev which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.0-7) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsframe1 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-13-dev which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for netbase (6.4) ... Purging configuration files for perl (5.36.0-10) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed Purging configuration files for python-matplotlib-data (3.6.3-1) ... Purging configuration files for python3 (3.11.6-1) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-iniconfig which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-parasail which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pluggy which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-py which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pytest which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed Purging configuration files for python3-sympy (1.12-6) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-wheel which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.7-1) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed dpkg: warning: ignoring request to remove python3.12-dev which isn't installed Purging configuration files for python3.12-minimal (3.12.0-7) ... Purging configuration files for readline-common (8.2-3) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed Purging configuration files for sgml-base (1.31) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 3m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'cpp', 'cpp-12', 'cpp-13', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'g++-13', 'gcc', 'gcc-12', 'gcc-13', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libparasail-dev:amd64', 'libparasail8:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'perl', 'perl-modules-5.36', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo:amd64', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-iniconfig', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parasail', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-wheel', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64'] 3m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg', '--purge', 'python3-pychopper'] 3m55.7s DUMP: dpkg: warning: ignoring request to remove python3-pychopper which isn't installed 3m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg', '--purge', 'python3-pychopper'] 3m55.7s INFO: Running scripts post_purge 3m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_purge_exceptions'] 3m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_purge_exceptions'] 3m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg', '--purge', '--pending'] 3m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg', '--purge', '--pending'] 3m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg', '--remove', '--pending'] 3m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg', '--remove', '--pending'] 3m55.8s INFO: Running scripts post_test 3m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_test_exceptions'] 3m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'tmp/scripts/post_test_exceptions'] 3m55.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 3m56.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 3m56.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg-divert', '--list'] 3m56.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 3m56.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'dpkg-divert', '--list'] 3m56.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', 'clean'] 3m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_', 'apt-get', 'clean'] 3m56.2s DEBUG: Recording chroot state 3m57.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/shm'] 3m57.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/shm'] 3m57.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/console'] 3m57.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/console'] 3m57.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/ptmx'] 3m57.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/ptmx'] 3m57.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/pts'] 3m57.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/dev/pts'] 3m57.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/proc'] 3m57.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_/proc'] 3m57.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 3m57.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpul3ovlq_'] 3m57.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpul3ovlq_ 3m57.3s INFO: PASS: Upgrading between Debian distributions. 3m57.3s INFO: PASS: All tests. 3m57.3s INFO: piuparts run ends. ret=0 End: 2023-12-06 03:32:59 GMT