Start: 2026-10-14 15:43:41 GMT [testing] Package: python3-shasta Source: shasta (0.14.0-3) Version: 0.14.0-3+b2 Installed-Size: 9383 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (<< 3.15), python3 (>= 3.14~), libblas3 | libblas.so.3, libboost-program-options1.92.0 (>= 1.92.0), libboost-serialization1.92.0 (>= 1.92.0), libc6 (>= 2.38), libgcc-s1 (>= 3.4), liblapack3 | liblapack.so.3, libpng16-16t64 (>= 1.6.46), libpython3.14 (>= 3.14.1), libspoa7.0.0 (>= 4.0.5), libstdc++6 (>= 14), ncbi-blast+ Description: nanopore whole genome assembly (dynamic library) Homepage: https://paoloshasta.github.io/shasta/ Description-md5: 66742cabe829f4e59fa774519150928d Section: python Priority: optional Filename: pool/main/s/shasta/python3-shasta_0.14.0-3+b2_amd64.deb Size: 2751824 MD5sum: 668e354617bea7c66ed95f0a51030d84 SHA256: 531be7d12d53d175f95f7ef7b62619d8e71acfe7cf0508dec6712a789f15f228 [sid] Package: python3-shasta Source: shasta Version: 0.14.0-4 Installed-Size: 9382 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: ncbi-blast+, python3 (<< 3.15), python3 (>= 3.14~), libblas3 | libblas.so.3, libboost-program-options1.92.0 (>= 1.92.0), libboost-serialization1.92.0 (>= 1.92.0), libc6 (>= 2.38), libgcc-s1 (>= 3.4), liblapack3 | liblapack.so.3, libpng16-16t64 (>= 1.6.46), libpython3.14 (>= 3.14.1), libspoa7.0.0 (>= 4.0.5), libstdc++6 (>= 14) Description: nanopore whole genome assembly (dynamic library) Homepage: https://paoloshasta.github.io/shasta/ Description-md5: 66742cabe829f4e59fa774519150928d Section: python Priority: optional Filename: pool/main/s/shasta/python3-shasta_0.14.0-4_amd64.deb Size: 2751012 MD5sum: b4e9e2d1c54851168ac2a8d08d80c624 SHA256: 7db020ebf7d8975454d8e7a9a4e7908a0f9faa9dca42fe60ba9b0f7d8eb01638 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-shasta=0.14.0-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291514~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-shasta=0.14.0-4 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.12.111+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.111-1 (2026-09-28) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp3tdjy3vp 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp3tdjy3vp 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp3tdjy3vp/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', 'update'] 0m2.9s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6628 kB] Fetched 16.8 MB in 2s (11.0 MB/s) Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: findutils libc-bin libc-gconv-modules-extra libc6 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4378 kB of archives. After this operation, 8192 B of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 findutils amd64 4.11.0-3 [788 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libc-bin amd64 2.43-7 [621 kB] Preconfiguring packages ... Fetched 4378 kB in 0s (32.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../findutils_4.11.0-3_amd64.deb ... Unpacking findutils (4.11.0-3) over (4.11.0-2) ... Setting up findutils (4.11.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../libc-gconv-modules-extra_2.43-7_amd64.deb ... Unpacking libc-gconv-modules-extra:amd64 (2.43-7) over (2.43-6) ... Setting up libc-gconv-modules-extra:amd64 (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../libc6_2.43-7_amd64.deb ... Unpacking libc6:amd64 (2.43-7) over (2.43-6) ... Setting up libc6:amd64 (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../libc-bin_2.43-7_amd64.deb ... Unpacking libc-bin (2.43-7) over (2.43-6) ... Setting up libc-bin (2.43-7) ... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s DUMP: 5d665ceb83c988a14ddd0d421cc72419 - 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s INFO: Running scripts post_setup 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_dummy_users'] 0m5.7s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_dummy_users'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_forbid_home'] 0m5.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_forbid_home'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_minimize'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_minimize'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_zz_backports'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_setup_zz_backports'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.2-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.2-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m5.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m6.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m6.2s INFO: Running scripts is_testable 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/is_testable_uninstallable'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/is_testable_uninstallable'] 0m6.2s INFO: Running scripts pre_test 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_test_exceptions'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_test_exceptions'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_test_root_password'] 0m6.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_test_root_password'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'show', '--no-all-versions', 'python3-shasta'] 0m6.4s DUMP: Package: python3-shasta Source: shasta (0.14.0-3) Version: 0.14.0-3+b2 Installed-Size: 9383 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (<< 3.15), python3 (>= 3.14~), libblas3 | libblas.so.3, libboost-program-options1.92.0 (>= 1.92.0), libboost-serialization1.92.0 (>= 1.92.0), libc6 (>= 2.38), libgcc-s1 (>= 3.4), liblapack3 | liblapack.so.3, libpng16-16t64 (>= 1.6.46), libpython3.14 (>= 3.14.1), libspoa7.0.0 (>= 4.0.5), libstdc++6 (>= 14), ncbi-blast+ Description-en: nanopore whole genome assembly (dynamic library) De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells. . Computational methods used by the Shasta assembler include: . * Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads. . * Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ?? 10). . Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers. . This package contains the dynamic library that can be interfaced and imported within Python. Description-md5: 66742cabe829f4e59fa774519150928d Homepage: https://paoloshasta.github.io/shasta/ Section: python Priority: optional Filename: pool/main/s/shasta/python3-shasta_0.14.0-3+b2_amd64.deb Size: 2751824 MD5sum: 668e354617bea7c66ed95f0a51030d84 SHA256: 531be7d12d53d175f95f7ef7b62619d8e71acfe7cf0508dec6712a789f15f228 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'show', '--no-all-versions', 'python3-shasta'] 0m6.4s INFO: apt-cache knows about the following packages: python3-shasta 0m6.4s INFO: Running scripts pre_install 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_database-server'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_database-server'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_exceptions'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_exceptions'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy'] 0m6.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy', 'python3-shasta'] 0m6.5s DUMP: python3-shasta: Installed: (none) Candidate: 0.14.0-3+b2 Version table: 0.14.0-3+b2 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy', 'python3-shasta'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', '-y', 'install', 'python3-shasta'] 0m15.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: isa-support libblas3 libboost-program-options1.92.0 libboost-serialization1.92.0 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 liblapack3 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libperl5.42 libpng16-16t64 libpython3-stdlib libpython3.14 libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libspoa7.0.0 libsqlite3-0 libuv1t64 media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase perl perl-modules-5.42 python3 python3-minimal python3.14 python3.14-minimal readline-common sse4.2-support Suggested packages: gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.14-venv python3.14-doc binutils binfmt-support readline-doc Recommended packages: libgpm2 ca-certificates The following NEW packages will be installed: isa-support libblas3 libboost-program-options1.92.0 libboost-serialization1.92.0 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 liblapack3 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libperl5.42 libpng16-16t64 libpython3-stdlib libpython3.14 libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libspoa7.0.0 libsqlite3-0 libuv1t64 media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase perl perl-modules-5.42 python3 python3-minimal python3-shasta python3.14 python3.14-minimal readline-common sse4.2-support 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. 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Unpacking libpng16-16t64:amd64 (1.6.59-1) ... Selecting previously unselected package libpython3.14:amd64. Preparing to unpack .../20-libpython3.14_3.14.8-1_amd64.deb ... Unpacking libpython3.14:amd64 (3.14.8-1) ... Selecting previously unselected package libspoa7.0.0:amd64. Preparing to unpack .../21-libspoa7.0.0_4.1.5-2_amd64.deb ... Unpacking libspoa7.0.0:amd64 (4.1.5-2) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../22-libuv1t64_1.52.1-4_amd64.deb ... Unpacking libuv1t64:amd64 (1.52.1-4) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../23-ncbi-data_6.1.20170106+dfsg2-7_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-7) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../24-ncbi-blast+_2.17.0+ds-7_amd64.deb ... Unpacking ncbi-blast+ (2.17.0+ds-7) ... Selecting previously unselected package python3-shasta. Preparing to unpack .../25-python3-shasta_0.14.0-3+b2_amd64.deb ... Unpacking python3-shasta (0.14.0-3+b2) ... Setting up media-types (14.0.0) ... Setting up liblmdb0:amd64 (0.9.35-1) ... Setting up ncbi-data (6.1.20170106+dfsg2-7) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libuv1t64:amd64 (1.52.1-4) ... Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up libboost-serialization1.92.0:amd64 (1.92.0-3) ... Setting up libgomp1:amd64 (16.2.0-3) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libboost-program-options1.92.0:amd64 (1.92.0-3) ... Setting up libspoa7.0.0:amd64 (4.1.5-2) ... Setting up libpng16-16t64:amd64 (1.6.59-1) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libgfortran5:amd64 (16.2.0-3) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up sse4.2-support (34) ... Setting up netbase (6.6) ... Setting up libmbedcrypto16:amd64 (3.6.7-3) ... Setting up perl-modules-5.42 (5.42.3-1) ... Setting up readline-common (8.3-4) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libperl5.42:amd64 (5.42.3-1) ... Setting up perl (5.42.3-1) ... Setting up libmbedx509-7:amd64 (3.6.7-3) ... Setting up libmbedtls21:amd64 (3.6.7-3) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libpython3.14-stdlib:amd64 (3.14.8-1) ... Setting up libpython3.14:amd64 (3.14.8-1) ... Setting up python3.14 (3.14.8-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3 (3.14.7-3) ... Setting up ncbi-vdb-data (3.4.1+dfsg-1) ... Setting up libncbi-vdb3:amd64 (3.4.1+dfsg-1) ... Setting up ncbi-blast+ (2.17.0+ds-7) ... Setting up python3-shasta (0.14.0-3+b2) ... Processing triggers for libc-bin (2.43-7) ... 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', '-y', 'install', 'python3-shasta'] 0m15.8s INFO: Running scripts post_install 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_install_exceptions'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_install_exceptions'] 0m15.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m16.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m16.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp3tdjy3vp to sid 0m16.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m16.5s INFO: Running scripts pre_distupgrade 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_distupgrade_exceptions'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_distupgrade_exceptions'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', 'update'] 0m20.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7741 kB] Fetched 18.7 MB in 3s (6609 kB/s) Reading package lists... 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', 'update'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', '-yf', 'dist-upgrade'] 0m22.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libaudit-common libaudit1 libboost-program-options1.92.0 libboost-serialization1.92.0 login.defs passwd python3-shasta 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5025 kB of archives. After this operation, 1024 B disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:3 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.20.3-1 [224 kB] Get:4 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.20.3-1 [1298 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libboost-program-options1.92.0 amd64 1.92.0-4 [344 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libboost-serialization1.92.0 amd64 1.92.0-4 [336 kB] Get:7 http://deb.debian.org/debian sid/main amd64 python3-shasta amd64 0.14.0-4 [2751 kB] Fetched 5025 kB in 1s (6626 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8520 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.2.1-1_all.deb ... Unpacking libaudit-common (1:4.2.1-1) over (1:4.1.2-1) ... Setting up libaudit-common (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8520 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.2.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.2.1-1) over (1:4.1.2-1+b2) ... Setting up libaudit1:amd64 (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8519 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.20.3-1_all.deb ... Unpacking login.defs (1:4.20.3-1) over (1:4.20.2-2) ... Preparing to unpack .../passwd_1%3a4.20.3-1_amd64.deb ... Unpacking passwd (1:4.20.3-1) over (1:4.20.2-2) ... Preparing to unpack .../libboost-program-options1.92.0_1.92.0-4_amd64.deb ... Unpacking libboost-program-options1.92.0:amd64 (1.92.0-4) over (1.92.0-3) ... Preparing to unpack .../libboost-serialization1.92.0_1.92.0-4_amd64.deb ... Unpacking libboost-serialization1.92.0:amd64 (1.92.0-4) over (1.92.0-3) ... Preparing to unpack .../python3-shasta_0.14.0-4_amd64.deb ... Unpacking python3-shasta (0.14.0-4) over (0.14.0-3+b2) ... Setting up login.defs (1:4.20.3-1) ... Setting up libboost-serialization1.92.0:amd64 (1.92.0-4) ... Setting up libboost-program-options1.92.0:amd64 (1.92.0-4) ... Setting up passwd (1:4.20.3-1) ... Setting up python3-shasta (0.14.0-4) ... Processing triggers for libc-bin (2.43-7) ... 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', '-yf', 'dist-upgrade'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.1s DUMP: 158c541f063c357c8a6a0712d66e6781 - 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'show', '--no-all-versions', 'python3-shasta'] 0m23.3s DUMP: Package: python3-shasta Source: shasta Version: 0.14.0-4 Installed-Size: 9382 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: ncbi-blast+, python3 (<< 3.15), python3 (>= 3.14~), libblas3 | libblas.so.3, libboost-program-options1.92.0 (>= 1.92.0), libboost-serialization1.92.0 (>= 1.92.0), libc6 (>= 2.38), libgcc-s1 (>= 3.4), liblapack3 | liblapack.so.3, libpng16-16t64 (>= 1.6.46), libpython3.14 (>= 3.14.1), libspoa7.0.0 (>= 4.0.5), libstdc++6 (>= 14) Description-en: nanopore whole genome assembly (dynamic library) De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells. . Computational methods used by the Shasta assembler include: . * Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads. . * Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ?? 10). . Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers. . This package contains the dynamic library that can be interfaced and imported within Python. Description-md5: 66742cabe829f4e59fa774519150928d Homepage: https://paoloshasta.github.io/shasta/ Section: python Priority: optional Filename: pool/main/s/shasta/python3-shasta_0.14.0-4_amd64.deb Size: 2751012 MD5sum: b4e9e2d1c54851168ac2a8d08d80c624 SHA256: 7db020ebf7d8975454d8e7a9a4e7908a0f9faa9dca42fe60ba9b0f7d8eb01638 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'show', '--no-all-versions', 'python3-shasta'] 0m23.3s INFO: apt-cache knows about the following packages: python3-shasta 0m23.3s INFO: Running scripts pre_install 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_database-server'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_database-server'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_exceptions'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_exceptions'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_extras'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_extras'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy'] 0m23.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy', 'python3-shasta'] 0m23.4s DUMP: python3-shasta: Installed: 0.14.0-4 Candidate: 0.14.0-4 Version table: *** 0.14.0-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0.14.0-3+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy', 'python3-shasta'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', '-y', 'install', 'python3-shasta'] 0m23.9s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-shasta is already the newest version (0.14.0-4). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', '-y', 'install', 'python3-shasta'] 0m23.9s INFO: Running scripts post_install 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_install_exceptions'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_install_exceptions'] 0m23.9s INFO: Running scripts post_distupgrade 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m24.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m24.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m25.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m25.1s INFO: Running scripts pre_install 0m25.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_database-server'] 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_database-server'] 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_exceptions'] 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_exceptions'] 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_extras'] 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_extras'] 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy'] 0m25.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy'] 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy', 'python3-shasta'] 0m25.3s DUMP: python3-shasta: Installed: 0.14.0-4 Candidate: 0.14.0-4 Version table: *** 0.14.0-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0.14.0-3+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-cache', 'policy', 'python3-shasta'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', '-y', 'install', 'python3-shasta=0.14.0-4'] 0m25.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-shasta is already the newest version (0.14.0-4). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', '-y', 'install', 'python3-shasta=0.14.0-4'] 0m25.8s INFO: Running scripts post_install 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_install_exceptions'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_install_exceptions'] 0m25.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m26.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m26.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', '-ac', '--ignore-obsolete'] 0m28.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', '-ac', '--ignore-obsolete'] 0m28.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m28.4s DUMP: 0.17.5+b5 0m28.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m28.4s INFO: Running adequate version 0.17.5+b5 now. 0m28.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'python3-shasta'] 0m28.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'python3-shasta'] 0m28.4s INFO: Running scripts pre_remove 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_exceptions'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/pre_remove_exceptions'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m29.7s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed isa-support:amd64 isa-support 34 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libboost-program-options1.92.0:amd64 libboost-program-options1.92.0 1.92.0-4 install ok installed libboost-serialization1.92.0:amd64 libboost-serialization1.92.0 1.92.0-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libexpat1:amd64 libexpat1 2.9.0-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgomp1:amd64 libgomp1 16.2.0-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed liblmdb0:amd64 liblmdb0 0.9.35-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.7-3 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.7-3 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.7-3 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.4.1+dfsg-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libperl5.42:amd64 libperl5.42 5.42.3-1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.59-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14:amd64 libpython3.14 3.14.8-1 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.8-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.8-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libspoa7.0.0:amd64 libspoa7.0.0 4.1.5-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libuv1t64:amd64 libuv1t64 1.52.1-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.4-1 install ok installed ncbi-blast+ ncbi-blast+ 2.17.0+ds-7 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-7 install ok installed ncbi-vdb-data ncbi-vdb-data 3.4.1+dfsg-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed python3 python3 3.14.7-3 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3-shasta python3-shasta 0.14.0-4 install ok installed python3.14 python3.14 3.14.8-1 install ok installed python3.14-minimal python3.14-minimal 3.14.8-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sse4.2-support sse4.2-support 34 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', 'remove', '--allow-remove-essential', 'isa-support:amd64', 'libblas3:amd64', 'libboost-program-options1.92.0:amd64', 'libboost-serialization1.92.0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.42:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'perl', 'perl-modules-5.42', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'sse4.2-support', 'python3-shasta'] 0m31.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: isa-support libblas3 libboost-program-options1.92.0 libboost-serialization1.92.0 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 liblapack3 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libperl5.42 libpng16-16t64 libpython3-stdlib libpython3.14 libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libspoa7.0.0 libsqlite3-0 libuv1t64 media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase perl perl-modules-5.42 python3 python3-minimal python3-shasta python3.14 python3.14-minimal readline-common sse4.2-support 0 upgraded, 0 newly installed, 42 to remove and 0 not upgraded. After this operation, 221 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8518 files and directories currently installed.) Removing python3-shasta (0.14.0-4) ... Removing ncbi-blast+ (2.17.0+ds-7) ... Removing sse4.2-support (34) ... Removing isa-support:amd64 (34) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libboost-program-options1.92.0:amd64 (1.92.0-4) ... Removing libboost-serialization1.92.0:amd64 (1.92.0-4) ... Removing libncbi-vdb3:amd64 (3.4.1+dfsg-1) ... Removing ncbi-vdb-data (3.4.1+dfsg-1) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.8-1) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.8-1) ... Removing libpython3.14:amd64 (3.14.8-1) ... Removing libexpat1:amd64 (2.9.0-1) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libgfortran5:amd64 (16.2.0-3) ... Removing libgomp1:amd64 (16.2.0-3) ... Removing liblmdb0:amd64 (0.9.35-1) ... Removing libmbedtls21:amd64 (3.6.7-3) ... Removing libmbedx509-7:amd64 (3.6.7-3) ... Removing libmbedcrypto16:amd64 (3.6.7-3) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libpng16-16t64:amd64 (1.6.59-1) ... Removing libpython3.14-minimal:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libspoa7.0.0:amd64 (4.1.5-2) ... Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing libuv1t64:amd64 (1.52.1-4) ... Removing media-types (14.0.0) ... Removing ncbi-data (6.1.20170106+dfsg2-7) ... Removing netbase (6.6) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.43-7) ... 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', 'remove', '--allow-remove-essential', 'isa-support:amd64', 'libblas3:amd64', 'libboost-program-options1.92.0:amd64', 'libboost-serialization1.92.0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.42:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'perl', 'perl-modules-5.42', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'sse4.2-support', 'python3-shasta'] 0m31.4s INFO: Running scripts post_remove 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_remove_exceptions'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_remove_exceptions'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg', '--purge', 'isa-support:amd64', 'libblas3:amd64', 'libboost-program-options1.92.0:amd64', 'libboost-serialization1.92.0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.42:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'perl', 'perl-modules-5.42', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'sse4.2-support'] 0m31.6s DUMP: dpkg: warning: ignoring request to remove isa-support which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libboost-program-options1.92.0 which is not installed dpkg: warning: ignoring request to remove libboost-serialization1.92.0 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove liblmdb0 which is not installed dpkg: warning: ignoring request to remove libmbedcrypto16 which is not installed dpkg: warning: ignoring request to remove libmbedtls21 which is not installed dpkg: warning: ignoring request to remove libmbedx509-7 which is not installed dpkg: warning: ignoring request to remove libncbi-vdb3 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed dpkg: warning: ignoring request to remove libpython3.14 which is not installed (Reading database ... 4963 files and directories currently installed.) Purging configuration files for libpython3.14-minimal:amd64 (3.14.8-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libspoa7.0.0 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libuv1t64 which is not installed Purging configuration files for media-types (14.0.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which is not installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-7) ... Purging configuration files for ncbi-vdb-data (3.4.1+dfsg-1) ... Purging configuration files for netbase (6.6) ... Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.8-1) ... Purging configuration files for readline-common (8.3-4) ... Purging configuration files for sse4.2-support (34) ... 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg', '--purge', 'isa-support:amd64', 'libblas3:amd64', 'libboost-program-options1.92.0:amd64', 'libboost-serialization1.92.0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.42:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'perl', 'perl-modules-5.42', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'sse4.2-support'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg', '--purge', 'python3-shasta'] 0m31.6s DUMP: dpkg: warning: ignoring request to remove python3-shasta which is not installed 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg', '--purge', 'python3-shasta'] 0m31.6s INFO: Running scripts post_purge 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_purge_exceptions'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_purge_exceptions'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg', '--purge', '--pending'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg', '--purge', '--pending'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg', '--remove', '--pending'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg', '--remove', '--pending'] 0m31.6s INFO: Running scripts post_test 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_test_exceptions'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'tmp/scripts/post_test_exceptions'] 0m31.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m32.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg-divert', '--list'] 0m32.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'dpkg-divert', '--list'] 0m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', 'clean'] 0m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp', 'apt-get', 'clean'] 0m32.0s DEBUG: Recording chroot state 0m33.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/shm'] 0m33.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/shm'] 0m33.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/console'] 0m33.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/console'] 0m33.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/ptmx'] 0m33.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/ptmx'] 0m33.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/pts'] 0m33.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/dev/pts'] 0m33.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/proc'] 0m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp/proc'] 0m33.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m33.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp3tdjy3vp'] 0m33.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp3tdjy3vp 0m33.5s INFO: PASS: Upgrading between Debian distributions. 0m33.5s INFO: PASS: All tests. 0m33.5s INFO: piuparts run ends. ret=0 End: 2026-10-14 15:44:15 GMT